Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 53 of 125
Found at i:10575791 original size:34 final size:34
Alignment explanation
Indices: 10575753--10575827 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 34
10575743 GAGAAATTCT
*
10575753 AGAAATACACT-TCCAAAATTTCTTAAAGGTTTTC
1 AGAAATACA-TGTCCAAAATTTCTTAAAGGATTTC
** * *
10575787 AGAAATGGATGTCCAAAATTTTTTAAGGGATTTC
1 AGAAATACATGTCCAAAATTTCTTAAAGGATTTC
*
10575821 AAAAATA
1 AGAAATA
10575828 AATTTTCGAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
33 1 0.03
34 32 0.97
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (34 bp):
AGAAATACATGTCCAAAATTTCTTAAAGGATTTC
Found at i:10576971 original size:21 final size:22
Alignment explanation
Indices: 10576946--10577004 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
10576936 TAGCAATAAT
*
10576946 CATAAAAAATTATTATT-TTAA
1 CATAAAAAATTATTATTGGTAA
* *
10576967 CATAAATAATTA-AATTGGTAA
1 CATAAAAAATTATTATTGGTAA
*
10576988 TATAAAAAATTATTATT
1 CATAAAAAATTATTATT
10577005 ACCAATAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 3 0.10
21 24 0.80
22 3 0.10
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (22 bp):
CATAAAAAATTATTATTGGTAA
Found at i:10577030 original size:17 final size:19
Alignment explanation
Indices: 10576989--10577039 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 19
10576979 AATTGGTAAT
*
10576989 ATAAAAAATTATTATTACCA
1 ATAAAAAATAATTATTA-CA
10577009 ATAAAAAATAATT-TTA-A
1 ATAAAAAATAATTATTACA
*
10577026 ATAAAAAAGAATTA
1 ATAAAAAATAATTA
10577040 ACATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 13 0.46
19 3 0.11
20 12 0.43
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (19 bp):
ATAAAAAATAATTATTACA
Found at i:10577192 original size:20 final size:19
Alignment explanation
Indices: 10577169--10577228 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
10577159 TGATAATGTA
10577169 AAAAAATAGTATTATAAAT
1 AAAAAATAGTATTATAAAT
*
10577188 -AAAAATA--ATTCTAAAT
1 AAAAAATAGTATTATAAAT
*
10577204 AAAAAATAAGTATTA-ACAT
1 AAAAAAT-AGTATTATAAAT
10577223 AAAAAA
1 AAAAAA
10577229 GTGAGAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
16 8 0.24
17 6 0.18
18 8 0.24
19 9 0.26
20 3 0.09
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (19 bp):
AAAAAATAGTATTATAAAT
Found at i:10577193 original size:18 final size:18
Alignment explanation
Indices: 10577170--10577227 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
10577160 GATAATGTAA
10577170 AAAAATAGTATTATAAAT
1 AAAAATAGTATTATAAAT
*
10577188 AAAAATA--ATTCTAAAT
1 AAAAATAGTATTATAAAT
*
10577204 AAAAAATAAGTATTA-ACAT
1 -AAAAAT-AGTATTATAAAT
10577223 AAAAA
1 AAAAA
10577228 AGTGAGAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
16 8 0.24
17 6 0.18
18 13 0.39
19 3 0.09
20 3 0.09
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (18 bp):
AAAAATAGTATTATAAAT
Found at i:10579245 original size:16 final size:17
Alignment explanation
Indices: 10579224--10579257 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
10579214 ATTAAAAATT
10579224 ATTAATAT-AAATAAAA
1 ATTAATATCAAATAAAA
*
10579240 ATTAATTTCAAATAAAA
1 ATTAATATCAAATAAAA
10579257 A
1 A
10579258 ATAAGTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (17 bp):
ATTAATATCAAATAAAA
Found at i:10579495 original size:51 final size:54
Alignment explanation
Indices: 10579392--10579501 Score: 156
Period size: 51 Copynumber: 2.1 Consensus size: 54
10579382 ATCAAACATA
10579392 AAAAAAATTAAAATAAAGCAAATATTATTAAGTTAAAAGAGATGAAAATAATTAT
1 AAAAAAATTAAAATAAA-CAAATATTATTAAGTTAAAAGAGATGAAAATAATTAT
* *
10579447 AAAAAATTTTAAATAAA-AAA-ATTATTAA-TGT-AAAGAGATGAAAATAATTAT
1 AAAAAAATTAAAATAAACAAATATTATTAAGT-TAAAAGAGATGAAAATAATTAT
10579498 AAAA
1 AAAA
10579502 TTCATATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
51 25 0.48
52 9 0.17
53 3 0.06
55 15 0.29
ACGTcount: A:0.63, C:0.01, G:0.08, T:0.28
Consensus pattern (54 bp):
AAAAAAATTAAAATAAACAAATATTATTAAGTTAAAAGAGATGAAAATAATTAT
Found at i:10592544 original size:21 final size:22
Alignment explanation
Indices: 10592518--10592569 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
10592508 TAAAATGATA
10592518 TATATTTTAAATA-TTT-AAAT
1 TATATTTTAAATATTTTAAAAT
**
10592538 TATTATTTTTTATATTTTAAAAT
1 TA-TATTTTAAATATTTTAAAAT
10592561 TATATTTTA
1 TATATTTTA
10592570 TGATTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 2 0.08
21 9 0.35
22 9 0.35
23 6 0.23
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TATATTTTAAATATTTTAAAAT
Found at i:10592552 original size:30 final size:30
Alignment explanation
Indices: 10592518--10592584 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
10592508 TAAAATGATA
*
10592518 TATATTTTAAATATT-TAAATTATTATTTTT
1 TATATTTTAAA-ATTATAAATTATGATTTTT
**
10592548 TATATTTTAAAATTATATTTTATGATTTTT
1 TATATTTTAAAATTATAAATTATGATTTTT
10592578 T-TATTTT
1 TATATTTT
10592585 TAACATTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (30 bp):
TATATTTTAAAATTATAAATTATGATTTTT
Found at i:10592560 original size:23 final size:23
Alignment explanation
Indices: 10592505--10592568 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
10592495 TTTGGAGATG
* *
10592505 TTTTAAAATGATATATATTTTAAA
1 TTTTAAAATTAT-TATTTTTTAAA
*
10592529 TATTT-AAATTATTATTTTTTATA
1 T-TTTAAAATTATTATTTTTTAAA
10592552 TTTTAAAATTA-TATTTT
1 TTTTAAAATTATTATTTT
10592569 ATGATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
22 9 0.26
23 16 0.46
24 7 0.20
25 3 0.09
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTAAAATTATTATTTTTTAAA
Found at i:10592578 original size:23 final size:23
Alignment explanation
Indices: 10592534--10592578 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
10592524 TTAAATATTT
*
10592534 AAATTATTATTTTTTATATTTTA
1 AAATTATTATTTTTGATATTTTA
*
10592557 AAATTA-TATTTTATGATTTTTT
1 AAATTATTATTTT-TGATATTTT
10592579 TATTTTTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
AAATTATTATTTTTGATATTTTA
Found at i:10594208 original size:29 final size:28
Alignment explanation
Indices: 10594151--10594218 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
10594141 TAATGATCCT
*
10594151 AATTATATTAAAAATTTAATATGAGATTTA
1 AATTATA--AAAAATTTAATATAAGATTTA
* * *
10594181 AATTTTAAAAAATTTTAATATAATATTTT
1 AATTATAAAAAA-TTTAATATAAGATTTA
10594210 AATTATAAA
1 AATTATAAA
10594219 TTTATTAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
28 5 0.16
29 21 0.66
30 6 0.19
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (28 bp):
AATTATAAAAAATTTAATATAAGATTTA
Found at i:10594250 original size:27 final size:28
Alignment explanation
Indices: 10594184--10594251 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 28
10594174 AGATTTAAAT
* *
10594184 TTTAAAAAATT-TTAATATAATATTTTA
1 TTTAAAAAATTATTAATATAATATATCA
* * * *
10594211 ATTATAAATTTATTAAT-TAATGTATCA
1 TTTAAAAAATTATTAATATAATATATCA
10594238 TTTAAAAAATTATT
1 TTTAAAAAATTATT
10594252 CATCAGTAAT
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (28 bp):
TTTAAAAAATTATTAATATAATATATCA
Found at i:10594302 original size:22 final size:21
Alignment explanation
Indices: 10594273--10594315 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
10594263 TATTATTTTT
10594273 TAAAATTAATAAT-ATTAATAA
1 TAAAATT-ATAATAATTAATAA
*
10594294 TAAATATTATATTAATTAATAA
1 TAAA-ATTATAATAATTAATAA
10594316 ATTATAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TAAAATTATAATAATTAATAA
Found at i:10594312 original size:31 final size:30
Alignment explanation
Indices: 10594276--10594355 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 30
10594266 TATTTTTTAA
10594276 AATTAATAATATTAATAA-TAAATATTATATT
1 AATTAATAA-ATT-ATAATTAAATATTATATT
10594307 AATTAATAAATTATAATTTAAATATTATATT
1 AATTAATAAATTATAA-TTAAATATTATATT
* * *
10594338 AAATATTATATTATAATT
1 AATTAATAAATTATAATT
10594356 TTAAGGTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
29 4 0.09
30 5 0.11
31 35 0.80
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (30 bp):
AATTAATAAATTATAATTAAATATTATATT
Found at i:10594327 original size:19 final size:19
Alignment explanation
Indices: 10594275--10594345 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
10594265 TTATTTTTTA
10594275 AAATTAATAATATTAATAAT
1 AAATT-ATAATATTAATAAT
*
10594295 AAA-TATTATATTAATTAAT
1 AAATTATAATATTAA-TAAT
*
10594314 AAATTATAAT-TTAAATATT
1 AAATTATAATATT-AATAAT
*
10594333 ATATTA-AATATTA
1 AAATTATAATATTA
10594346 TATTATAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
18 13 0.30
19 20 0.47
20 10 0.23
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATTATAATATTAATAAT
Found at i:10594339 original size:12 final size:12
Alignment explanation
Indices: 10594283--10594350 Score: 58
Period size: 12 Copynumber: 6.0 Consensus size: 12
10594273 TAAAATTAAT
*
10594283 AATATTAATAATA
1 AATATT-ATATTA
10594296 AATATTATATT-
1 AATATTATATTA
10594307 -A-ATTA-A-TA
1 AATATTATATTA
*
10594315 AATTATAAT-TTA
1 AA-TATTATATTA
10594327 AATATTATATTA
1 AATATTATATTA
10594339 AATATTATATTA
1 AATATTATATTA
10594351 TAATTTTAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 5 0.11
10 1 0.02
11 8 0.18
12 23 0.51
13 6 0.13
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AATATTATATTA
Found at i:10594902 original size:32 final size:28
Alignment explanation
Indices: 10594866--10594928 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 28
10594856 TATTTTTTAT
*
10594866 ATTTTTTATATCAATATATATTATAATATATA
1 ATTTTTTATAT-AA-A-ATATGAT-ATATATA
10594898 A-TTTTTATATAAAATATGATATATATA
1 ATTTTTTATATAAAATATGATATATATA
10594925 ATTT
1 ATTT
10594929 ATTAAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
27 8 0.28
28 8 0.28
29 1 0.03
30 2 0.07
31 9 0.31
32 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (28 bp):
ATTTTTTATATAAAATATGATATATATA
Found at i:10595313 original size:7 final size:7
Alignment explanation
Indices: 10595303--10595327 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10595293 TTTAAAGTTG
10595303 ATTTAAA
1 ATTTAAA
10595310 ATTTAAA
1 ATTTAAA
10595317 ATTTAAA
1 ATTTAAA
10595324 ATTT
1 ATTT
10595328 GATTCAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
ATTTAAA
Found at i:10602595 original size:21 final size:21
Alignment explanation
Indices: 10602570--10602613 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
10602560 ATTTTATACA
* *
10602570 TTCTTGATCCATTATAGCACG
1 TTCTTCATCAATTATAGCACG
* *
10602591 TTCTTCTTCAATTTTAGCACG
1 TTCTTCATCAATTATAGCACG
10602612 TT
1 TT
10602614 TATGCTCCCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.45
Consensus pattern (21 bp):
TTCTTCATCAATTATAGCACG
Found at i:10603668 original size:160 final size:160
Alignment explanation
Indices: 10603329--10603631 Score: 398
Period size: 160 Copynumber: 1.9 Consensus size: 160
10603319 CCTTTCACAT
* * * *
10603329 ATATCAATCATGGAAACTAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTGAAGCCATCC
1 ATATCAATCATGGAAACCAAGTTCAATCATTTCAAAAAATTTAATATCATGTATTGAAACCATCC
** * * ***
10603394 AAATTGTTAAAATAGATTAATAATAGCAATTTTGTATTTTTGTCTTTTAATGGCAAAAATAGTCC
66 AAATTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTGCCTTTTAACAACAAAAATAGTCC
*
10603459 TAATAGACATAAACAAAAACTTTTTTACAC
131 TAACAGACATAAACAAAAACTTTTTTACAC
* * *
10603489 ATATCAACCATAGAAACCAAGTTCAATCA-TTCAAACAAATTTAATATCATGTATTGAAACTATC
1 ATATCAATCATGGAAACCAAGTTCAATCATTTCAAA-AAATTTAATATCATGTATTGAAACCATC
10603553 CAAATTGTTAAAATAGAACAATAATATG-AAATTTGTA-TTTTGCCTTTTAACAACATAAAATA-
65 CAAATTGTTAAAATAGAACAATAATA-GCAAATTTGTATTTTTGCCTTTTAACAACA-AAAATAG
*
10603615 TCCTAAACAGACGTAAA
128 TCCT-AACAGACATAAA
10603632 TGTTAGCTTT
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
159 23 0.19
160 99 0.80
161 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (160 bp):
ATATCAATCATGGAAACCAAGTTCAATCATTTCAAAAAATTTAATATCATGTATTGAAACCATCC
AAATTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTGCCTTTTAACAACAAAAATAGTCC
TAACAGACATAAACAAAAACTTTTTTACAC
Found at i:10606792 original size:21 final size:20
Alignment explanation
Indices: 10606768--10606812 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
10606758 CTTGAAGGAA
*
10606768 AAAAATTAAAAAGAAAAAGG
1 AAAAAGTAAAAAGAAAAAGG
10606788 TAAAAAGTAAAAAGAAAAAGG
1 -AAAAAGTAAAAAGAAAAAGG
10606809 AAAA
1 AAAA
10606813 TGAATGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.09
Consensus pattern (20 bp):
AAAAAGTAAAAAGAAAAAGG
Found at i:10611216 original size:31 final size:33
Alignment explanation
Indices: 10611164--10611236 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 33
10611154 TTTAAAAACA
*** *
10611164 AAAAAAATTAATTTTTTAATTTT-T-ATATTTT
1 AAAAAAATTAATTTAAAAATTTTATAAAATTTT
10611195 AAAAAAATTAATTTAAAAATTTTATAAAATTTT
1 AAAAAAATTAATTTAAAAATTTTATAAAATTTT
*
10611228 AAAATAATT
1 AAAAAAATT
10611237 TTTTTTCTCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 20 0.57
32 1 0.03
33 14 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (33 bp):
AAAAAAATTAATTTAAAAATTTTATAAAATTTT
Found at i:10620133 original size:24 final size:24
Alignment explanation
Indices: 10620096--10620148 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
10620086 TGCCGAGTTA
*
10620096 TTTTTCTTTGCTTTTCCTTCTTTAT
1 TTTTTCTGTGCTTTT-CTTCTTTAT
* *
10620121 TTTTTCTGT-CTTTTCTTTTTTTT
1 TTTTTCTGTGCTTTTCTTCTTTAT
10620144 TTTTT
1 TTTTT
10620149 GAGGCAGAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 12 0.48
24 5 0.20
25 8 0.32
ACGTcount: A:0.02, C:0.15, G:0.04, T:0.79
Consensus pattern (24 bp):
TTTTTCTGTGCTTTTCTTCTTTAT
Found at i:10625784 original size:28 final size:28
Alignment explanation
Indices: 10625740--10625805 Score: 87
Period size: 28 Copynumber: 2.2 Consensus size: 28
10625730 AGAAATGTGC
* *
10625740 AATTAATAATTATATTTTATTAATTAATTGT
1 AATTAATAA-TAT-TTTTA-TAATAAATTAT
10625771 AATTAATAATATTTTTATAATAAATTAT
1 AATTAATAATATTTTTATAATAAATTAT
10625799 AATTAAT
1 AATTAAT
10625806 TTAATAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 16 0.48
29 5 0.15
30 3 0.09
31 9 0.27
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
AATTAATAATATTTTTATAATAAATTAT
Found at i:10626243 original size:10 final size:9
Alignment explanation
Indices: 10626224--10626255 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
10626214 TTACGTCAAT
10626224 ATTAAAAAA
1 ATTAAAAAA
10626233 ATTATAAAAA
1 ATTA-AAAAA
10626243 ATTAAAAAA
1 ATTAAAAAA
10626252 ATTA
1 ATTA
10626256 GTAAATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (9 bp):
ATTAAAAAA
Found at i:10626369 original size:19 final size:18
Alignment explanation
Indices: 10626347--10626401 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 18
10626337 CGAAAACTTT
10626347 AAATTTTCAAAAAAAATCA
1 AAATTTTCAAAAAAAAT-A
10626366 AAATTTTAACAAAAAATAATA
1 AAATTTT--CAAAAAA-AATA
**
10626387 AAAAATTCAAAAAAA
1 AAATTTTCAAAAAAA
10626402 TTATTTCTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
18 1 0.03
19 14 0.45
21 13 0.42
22 3 0.10
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATTTTCAAAAAAAATA
Found at i:10626691 original size:101 final size:101
Alignment explanation
Indices: 10626571--10626761 Score: 305
Period size: 101 Copynumber: 1.9 Consensus size: 101
10626561 TTTAAAAAAA
* *
10626571 TTTTGAATTATTTGGATTTTTTATTAAAAA-TTTCAAGTTTTTTTAG-TTTAGGATTTTTGAAAT
1 TTTTGAATTATTTGGATTTTTAATTAAAAATTTTCAA-TTATTTTAGTTTTA-GATTTTTGAAAT
*
10626634 TTTTTAATTTTTCAAAAGCTTTTAGAAATTAAAATTTT
64 TTTTTAATTTTTCAAAAACTTTTAGAAATTAAAATTTT
*
10626672 TTTTGAATTATTTGGATTTTTAATTAAAAATTTTCAATTATTTTAGTTTTATATTTTTGAAATTT
1 TTTTGAATTATTTGGATTTTTAATTAAAAATTTTCAATTATTTTAGTTTTAGATTTTTGAAATTT
*
10626737 TTTAATTTTTCAAAAATTTTTAGAA
66 TTTAATTTTTCAAAAACTTTTAGAA
10626762 TTTGGTAAAT
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
101 73 0.88
102 10 0.12
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.57
Consensus pattern (101 bp):
TTTTGAATTATTTGGATTTTTAATTAAAAATTTTCAATTATTTTAGTTTTAGATTTTTGAAATTT
TTTAATTTTTCAAAAACTTTTAGAAATTAAAATTTT
Found at i:10626812 original size:22 final size:22
Alignment explanation
Indices: 10626782--10626831 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
10626772 TTTTTTAGAA
10626782 TTTTAAAAAAAA-TTTAGATTTT
1 TTTTAAAAAAAATTTTAG-TTTT
*
10626804 TTTTCAAAAAAATTTTAGTTTT
1 TTTTAAAAAAAATTTTAGTTTT
10626826 TCTTTA
1 T-TTTA
10626832 TTTTCAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (22 bp):
TTTTAAAAAAAATTTTAGTTTT
Found at i:10626812 original size:23 final size:21
Alignment explanation
Indices: 10626782--10626831 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 21
10626772 TTTTTTAGAA
10626782 TTTTAAAAAAAATTTAGATTTT
1 TTTTAAAAAAAATTTAG-TTTT
*
10626804 TTTTCAAAAAAATTTTAGTTTT
1 TTTT-AAAAAAAATTTAGTTTT
10626826 TCTTTA
1 T-TTTA
10626832 TTTTCAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 10 0.40
23 15 0.60
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (21 bp):
TTTTAAAAAAAATTTAGTTTT
Found at i:10640688 original size:2 final size:2
Alignment explanation
Indices: 10640681--10640710 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10640671 TATTGGTTTG
10640681 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10640711 GTAGAGAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10640718 original size:2 final size:2
Alignment explanation
Indices: 10640713--10640738 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10640703 ATATATATGT
10640713 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
10640739 TGTGTGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10641354 original size:30 final size:30
Alignment explanation
Indices: 10641309--10641385 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
10641299 CCTATCAAAC
* *
10641309 TTTAAATTTTTTATTTTAGATT-AGCTGAATT
1 TTTAAA-TATTTATTTT-GATTCAGCTAAATT
* **
10641340 TTTAAATATTTATTTTTATTCATTTAAATT
1 TTTAAATATTTATTTTGATTCAGCTAAATT
10641370 TTTAAATATTTATTTT
1 TTTAAATATTTATTTT
10641386 TATCATAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
29 3 0.08
30 31 0.77
31 6 0.15
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (30 bp):
TTTAAATATTTATTTTGATTCAGCTAAATT
Found at i:10641356 original size:14 final size:14
Alignment explanation
Indices: 10641337--10641387 Score: 59
Period size: 14 Copynumber: 3.5 Consensus size: 14
10641327 GATTAGCTGA
10641337 ATTTTTAAATATTT
1 ATTTTTAAATATTT
*
10641351 ATTTTT-ATTCATTT
1 ATTTTTAAAT-ATTT
10641365 AAATTTTTAAATATTT
1 --ATTTTTAAATATTT
10641381 ATTTTTA
1 ATTTTTA
10641388 TCATAATTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
13 2 0.06
14 17 0.55
16 10 0.32
17 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (14 bp):
ATTTTTAAATATTT
Found at i:10641380 original size:16 final size:16
Alignment explanation
Indices: 10641336--10641381 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
10641326 AGATTAGCTG
10641336 AATTTTTAAATATTT-
1 AATTTTTAAATATTTA
*
10641351 -ATTTTT-ATTCATTTA
1 AATTTTTAAAT-ATTTA
10641366 AATTTTTAAATATTTA
1 AATTTTTAAATATTTA
10641382 TTTTTATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
13 2 0.08
14 10 0.40
16 11 0.44
17 2 0.08
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (16 bp):
AATTTTTAAATATTTA
Found at i:10644543 original size:4 final size:4
Alignment explanation
Indices: 10644534--10644561 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
10644524 ATTATTAAGT
10644534 ATTA ATTA ATTA ATTA ATTA ATTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA
10644562 TACTTTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:10646221 original size:15 final size:15
Alignment explanation
Indices: 10646185--10646222 Score: 69
Period size: 14 Copynumber: 2.6 Consensus size: 15
10646175 GATACCAATT
10646185 TATAAATTTTTTCAA
1 TATAAATTTTTTCAA
10646200 TAT-AATTTTTTCAA
1 TATAAATTTTTTCAA
10646214 TATAAATTT
1 TATAAATTT
10646223 AATTTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (15 bp):
TATAAATTTTTTCAA
Found at i:10647221 original size:14 final size:13
Alignment explanation
Indices: 10647202--10647268 Score: 55
Period size: 13 Copynumber: 4.9 Consensus size: 13
10647192 AAATAATTTT
10647202 AAAAAATAAAAAGC
1 AAAAAA-AAAAAGC
* *
10647216 AAAAAAGAAAAGA
1 AAAAAAAAAAAGC
10647229 AAAAAGAAAAAAGC
1 AAAAA-AAAAAAGC
**
10647243 -AAAACCAAAAGC
1 AAAAAAAAAAAGC
10647255 AAAAGCAAAAAAAG
1 AAAA--AAAAAAAG
10647269 GAATAAACTA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
12 6 0.15
13 17 0.41
14 12 0.29
15 6 0.15
ACGTcount: A:0.78, C:0.09, G:0.12, T:0.01
Consensus pattern (13 bp):
AAAAAAAAAAAGC
Found at i:10647231 original size:12 final size:13
Alignment explanation
Indices: 10647210--10647238 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
10647200 TTAAAAAATA
10647210 AAAAGCAAAAAAG
1 AAAAGCAAAAAAG
10647223 AAAAG-AAAAAAG
1 AAAAGCAAAAAAG
10647235 AAAA
1 AAAA
10647239 AAGCAAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAGCAAAAAAG
Found at i:10647231 original size:19 final size:20
Alignment explanation
Indices: 10647204--10647258 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
10647194 ATAATTTTAA
*
10647204 AAAATAAAAAGCAAAAAAG-
1 AAAACAAAAAGCAAAAAAGC
*
10647223 AAAAGAAAAAAG-AAAAAAGC
1 AAAA-CAAAAAGCAAAAAAGC
*
10647243 AAAACCAAAAGCAAAA
1 AAAACAAAAAGCAAAA
10647259 GCAAAAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.78, C:0.09, G:0.11, T:0.02
Consensus pattern (20 bp):
AAAACAAAAAGCAAAAAAGC
Found at i:10650939 original size:4 final size:4
Alignment explanation
Indices: 10650932--10650970 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
10650922 GAATTAAAAT
* **
10650932 TTTA TTTA TTTA TTTA TTGA GGTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
10650971 TGGTTGTTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:10651608 original size:106 final size:102
Alignment explanation
Indices: 10651489--10651860 Score: 268
Period size: 106 Copynumber: 3.5 Consensus size: 102
10651479 CTATTGGGTG
* * ** * * *
10651489 ATTTAAATTTCAAATTGAATCTTACCAAACTATTGGAAGGTTTAATTATTTTTTGTAGAAAAAAA
1 ATTTAAATCTCAAATTAAATCTTACCAAACTATTAAAAGATTTAATGATTTTTT-TACAAAAAAA
*
10651554 TAAATTTTTAAATAAAATCAATCTTATCAAACTATTGAAGA
65 TAAATTTTTAAAT--AATCAATC-TATCAAACTATTGAAAA
* * * **
10651595 ATTTAAATCTCAAATTAAATCTTATCAAACTTTTAAAAGATTTAATGAAGTTTTAAACAAATTCG
1 ATTTAAATCTCAAATTAAATCTTACCAAACTATTAAAAGATTTAATG-ATTTTTTTACAAA----
* * * *
10651660 TAAAT-AAGTTTTGAAT-ATCAATCCTACCAAACTATTGAAAA
61 AAAATAAATTTTTAAATAATCAAT-CTATCAAACTATTGAAAA
* * * * *
10651701 ATTTAAATATCAAATTAAATTTTATCAAACTATTAGAAAG-TTTAATTATAATTTTTTATAAAAA
1 ATTTAAATCTCAAATTAAATCTTACCAAACTATTA-AAAGATTTAATGAT--TTTTTTACAAAAA
* ** * *
10651765 AGTTAAATTTTTAAAATTTTTAGTGCTATCAAACTATT-AAAA
63 A-ATAAATTTTT-AAATAATCAAT-CTATCAAACTATTGAAAA
* * * *
10651807 TATTTAAATCTCAGCATTGAATTTTACCAAA-TATTGAAAGATTTAATGATTTTT
1 -ATTTAAATCTCA-AATTAAATCTTACCAAACTATTAAAAGATTTAATGATTTTT
10651861 CTTAAGACAA
Statistics
Matches: 210, Mismatches: 40, Indels: 33
0.74 0.14 0.12
Matches are distributed among these distances:
103 2 0.01
104 1 0.00
105 11 0.05
106 113 0.54
107 56 0.27
108 14 0.07
109 9 0.04
110 4 0.02
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (102 bp):
ATTTAAATCTCAAATTAAATCTTACCAAACTATTAAAAGATTTAATGATTTTTTTACAAAAAAAT
AAATTTTTAAATAATCAATCTATCAAACTATTGAAAA
Found at i:10659669 original size:45 final size:44
Alignment explanation
Indices: 10659597--10659736 Score: 181
Period size: 45 Copynumber: 3.1 Consensus size: 44
10659587 ATTAATTATG
* * * *
10659597 ATTATTGTGTTCACATGCAAACCCTATGATTTTAGGCAGCAGCTA
1 ATTATTGTGTTCACATGTAAA-TCTATGACTTTAGGCAACAGCTA
* *
10659642 ATTATTTTGTTCACATGTAAATTCTATGACATTAGGCAACAGCTA
1 ATTATTGTGTTCACATGTAAA-TCTATGACTTTAGGCAACAGCTA
* *
10659687 ATTATTGTGTTCACATGTAAATCTCATGACTTTAAGTAACAGCTA
1 ATTATTGTGTTCACATGTAAATCT-ATGACTTTAGGCAACAGCTA
10659732 ATTAT
1 ATTAT
10659737 GTTTACATGA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
44 3 0.04
45 80 0.96
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.37
Consensus pattern (44 bp):
ATTATTGTGTTCACATGTAAATCTATGACTTTAGGCAACAGCTA
Found at i:10666672 original size:20 final size:19
Alignment explanation
Indices: 10666637--10666682 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
10666627 TGAGATCGTA
10666637 TAATTTTTCTTAAAATTTT
1 TAATTTTTCTTAAAATTTT
*
10666656 TAATTTATTCTTGAAATTTT
1 TAATTT-TTCTTAAAATTTT
10666676 T-ATTTTT
1 TAATTTTT
10666683 ATATTTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 2 0.08
19 10 0.40
20 13 0.52
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (19 bp):
TAATTTTTCTTAAAATTTT
Found at i:10667595 original size:2 final size:2
Alignment explanation
Indices: 10667590--10667614 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10667580 TTGATCCCTC
10667590 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10667615 ATTTTGATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10671923 original size:23 final size:23
Alignment explanation
Indices: 10671897--10671943 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
10671887 AAAATTCATT
10671897 TTCTCTCCCTAAAACCAAATCAA
1 TTCTCTCCCTAAAACCAAATCAA
** *
10671920 TTCTCTTTCTAAACCCAAATCAA
1 TTCTCTCCCTAAAACCAAATCAA
10671943 T
1 T
10671944 CCATAATAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (23 bp):
TTCTCTCCCTAAAACCAAATCAA
Found at i:10673263 original size:26 final size:26
Alignment explanation
Indices: 10673234--10673289 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
10673224 AATTAAACAC
*
10673234 TTATAAGCTTTAAATAAAATAAAATT
1 TTATAAACTTTAAATAAAATAAAATT
*
10673260 TTATAAACTTTAAATAAAATAATATT
1 TTATAAACTTTAAATAAAATAAAATT
10673286 TTAT
1 TTAT
10673290 TTACTGTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (26 bp):
TTATAAACTTTAAATAAAATAAAATT
Found at i:10674443 original size:141 final size:141
Alignment explanation
Indices: 10674189--10674466 Score: 502
Period size: 141 Copynumber: 2.0 Consensus size: 141
10674179 TCACTTGATC
* *
10674189 TCACATAATTTATAGTAATCACCTCATCTGAAATTAATTGTCAAAGATAGCTATGTCTTAATCTA
1 TCACATAATTTATAGTAATCACCTCATCTGAAATTAATTATCAAAGATAGCAATGTCTTAATCTA
**
10674254 ATATGTCTAGACTTTCCATTATATACTTGGCTATATGTCCTTACTAGAGTTGCTTCATTATCACA
66 ATATGTCTAGACTTTCCATTATATACTTGGCTATATGTCCTTACTAGAGTTGCTTCACCATCACA
10674319 TCGGATAGATT
131 TCGGATAGATT
*
10674330 TCACATAATTTATAGTAATCACTTCATCTGAAATTAATTATCAAAGATAGCAATGTCTTAATCTA
1 TCACATAATTTATAGTAATCACCTCATCTGAAATTAATTATCAAAGATAGCAATGTCTTAATCTA
10674395 ATATGTCTAGACTTTCCATTATATACTTGGCTATATGTCCTTACTAGAGTTGCTTCACCATCACA
66 ATATGTCTAGACTTTCCATTATATACTTGGCTATATGTCCTTACTAGAGTTGCTTCACCATCACA
*
10674460 TTGGATA
131 TCGGATA
10674467 AAAGTTAGGG
Statistics
Matches: 131, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 131 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (141 bp):
TCACATAATTTATAGTAATCACCTCATCTGAAATTAATTATCAAAGATAGCAATGTCTTAATCTA
ATATGTCTAGACTTTCCATTATATACTTGGCTATATGTCCTTACTAGAGTTGCTTCACCATCACA
TCGGATAGATT
Found at i:10678706 original size:23 final size:24
Alignment explanation
Indices: 10678653--10678707 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
10678643 GAACAGTTGA
*
10678653 AACTATTTCATTTTGAATAGACTT
1 AACTATCTCATTTTGAATAGACTT
** *
10678677 ATTTATCTC-TTTTGTATAGACTT
1 AACTATCTCATTTTGAATAGACTT
10678700 AACTATCT
1 AACTATCT
10678708 GTTCTTATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.29, C:0.15, G:0.07, T:0.49
Consensus pattern (24 bp):
AACTATCTCATTTTGAATAGACTT
Found at i:10679603 original size:39 final size:41
Alignment explanation
Indices: 10679543--10679650 Score: 104
Period size: 39 Copynumber: 2.8 Consensus size: 41
10679533 AAAATATTCA
10679543 TATTAAGAA-AATAATAT--TATTATATTATTTAACATTAAT
1 TATTAA-AATAATAATATAATATTATATTATTTAACATTAAT
* * ** *
10679582 TATTAAAATAGTAA-A-AATATTATA-AATGTTATTATTTAT
1 TATTAAAATAATAATATAATATTATATTAT-TTAACATTAAT
10679621 TATTAAAATAATAATATAATATTAT-TTATT
1 TATTAAAATAATAATATAATATTATATTATT
10679651 ATCGAAATAC
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
38 5 0.09
39 38 0.69
40 2 0.04
41 10 0.18
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (41 bp):
TATTAAAATAATAATATAATATTATATTATTTAACATTAAT
Found at i:10680632 original size:25 final size:25
Alignment explanation
Indices: 10680590--10680637 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
10680580 GGAATGCCAA
** *
10680590 AAAACCAACAAATTTCAATAAATAT
1 AAAACCAACAAAACTCAACAAATAT
10680615 AAAACCAACAAAACTCAACAAAT
1 AAAACCAACAAAACTCAACAAAT
10680638 TGGTAACCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.62, C:0.21, G:0.00, T:0.17
Consensus pattern (25 bp):
AAAACCAACAAAACTCAACAAATAT
Found at i:10680683 original size:58 final size:59
Alignment explanation
Indices: 10680596--10680721 Score: 177
Period size: 59 Copynumber: 2.2 Consensus size: 59
10680586 CCAAAAAACC
*
10680596 AACAAATTTCAATAAATATAAAACCAAC-AAAACTCAACAAATTGGTAACCAAAA-TCCA
1 AACAAATTTCAACAAATATAAAACCAACAAAAACTCAACAAATTGGTAACCAAAACT-CA
* * *
10680654 AATAAATTTCAACAAATA-AACAACTAACAAAAACTCAACACATTGGTAACCAAAACTCA
1 AACAAATTTCAACAAATATAA-AACCAACAAAAACTCAACAAATTGGTAACCAAAACTCA
10680713 AACAAATTT
1 AACAAATTT
10680722 TACCCAATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
57 2 0.03
58 22 0.37
59 35 0.58
60 1 0.02
ACGTcount: A:0.56, C:0.21, G:0.03, T:0.20
Consensus pattern (59 bp):
AACAAATTTCAACAAATATAAAACCAACAAAAACTCAACAAATTGGTAACCAAAACTCA
Found at i:10681953 original size:12 final size:12
Alignment explanation
Indices: 10681936--10681980 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
10681926 TGAACATTAA
10681936 ATGAACATGTTT
1 ATGAACATGTTT
* *
10681948 ATGAACATATATAA
1 ATGAACATGT-T-T
10681962 ATGAACATGTTT
1 ATGAACATGTTT
10681974 ATGAACA
1 ATGAACA
10681981 ATAAACAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 16 0.59
13 2 0.07
14 9 0.33
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.33
Consensus pattern (12 bp):
ATGAACATGTTT
Found at i:10682003 original size:15 final size:15
Alignment explanation
Indices: 10681983--10682025 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
10681973 TATGAACAAT
*
10681983 AAACAAACCATAACC
1 AAACAAACCATAAAC
**
10681998 AAACAAA-TTTAAAC
1 AAACAAACCATAAAC
10682012 AAACAAACCATAAA
1 AAACAAACCATAAA
10682026 TGAACATAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (15 bp):
AAACAAACCATAAAC
Found at i:10682631 original size:16 final size:17
Alignment explanation
Indices: 10682595--10682631 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
10682585 TTATATATCA
10682595 ATAAATCTTTTATAAAT
1 ATAAATCTTTTATAAAT
10682612 ATAAAT-TTTT-TAAAT
1 ATAAATCTTTTATAAAT
10682627 GATAA
1 -ATAA
10682632 TATAAACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 5 0.26
16 8 0.42
17 6 0.32
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (17 bp):
ATAAATCTTTTATAAAT
Found at i:10685054 original size:12 final size:12
Alignment explanation
Indices: 10685032--10685062 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
10685022 CTTTATATAT
10685032 ATACA-CATGAA
1 ATACATCATGAA
10685043 ATACATCATGAA
1 ATACATCATGAA
10685055 ATACATCA
1 ATACATCA
10685063 ATTACTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.52, C:0.19, G:0.06, T:0.23
Consensus pattern (12 bp):
ATACATCATGAA
Found at i:10685545 original size:262 final size:271
Alignment explanation
Indices: 10685044--10685563 Score: 745
Period size: 262 Copynumber: 1.9 Consensus size: 271
10685034 ACACATGAAA
10685044 TACATCATGAAATACATCAATTACTCAAATGGATACTATATTTAATCAAATATAAATATATCAAA
1 TACATCATGAAATACATCAATTAC-C--ATGGATACTATATTTAATCAAATATAAATATATCAAA
* *
10685109 TAATTAATTAGAGAATCAACTATTTTATAATTGTAATTGTATTATTTATTAATTTATTAATTATA
63 TAATTAATTAGAGAATCAACTATTTTATAATTGTAATTGTATTATGTATT-ATATATTAATTATA
* * * * * *
10685174 TATTGATTGATTTAATTGTCAAATTAAGAAATTTTTAATATTTTAATATTTTTAATATGAATTGA
127 TACTAATTGATTTAATTATCAAATTAAGAAATTTTTAAAATTTTAATACTTTCAATATGAATTGA
** * *
10685239 ATTGAGGGTGATTTAAAATCAATAATAAAAACATAAATATAATCAATGTAGTTTTTTTAATTATA
192 ATTGAGAATGATTTAAAATCAATAATAAAAACATAAATATAATCAATGTAATTTTTTAAATTATA
10685304 TTTATTCTATATATT
257 TTTATTCTATATATT
*
10685319 TACA-CATGAAATACATCAATTA-C-TGGATACTATATTTAATCAAATATAAATGTATCAAATAA
1 TACATCATGAAATACATCAATTACCATGGATACTATATTTAATCAAATATAAATATATCAAATAA
* *
10685381 TTGATTAGAGAATTAACTATTTTATAATTGTAA-T-TA-TA-GTATT-TAT-TTAATTATATACT
66 TTAATTAGAGAATCAACTATTTTATAATTGTAATTGTATTATGTATTATATATTAATTATATACT
*
10685440 AATTGATTTAATTTATCAAATTAA-AATTTTTTAAAATTTTAATACTTTCAATATGAATTGAATT
131 AATTGATTTAA-TTATCAAATTAAGAAATTTTTAAAATTTTAATACTTTCAATATGAATTGAATT
** * *
10685504 GAGAATGATTTAAGGTTAATAATAAAAACATAAATATAATCAATTTAATTTTTTAAATTA
195 GAGAATGATTTAAAATCAATAATAAAAACATAAATATAATCAATGTAATTTTTTAAATTA
10685564 AAAATATATA
Statistics
Matches: 224, Mismatches: 20, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
262 110 0.49
263 13 0.06
265 4 0.02
266 2 0.01
267 2 0.01
268 1 0.00
269 69 0.31
272 1 0.00
274 18 0.08
275 4 0.02
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.43
Consensus pattern (271 bp):
TACATCATGAAATACATCAATTACCATGGATACTATATTTAATCAAATATAAATATATCAAATAA
TTAATTAGAGAATCAACTATTTTATAATTGTAATTGTATTATGTATTATATATTAATTATATACT
AATTGATTTAATTATCAAATTAAGAAATTTTTAAAATTTTAATACTTTCAATATGAATTGAATTG
AGAATGATTTAAAATCAATAATAAAAACATAAATATAATCAATGTAATTTTTTAAATTATATTTA
TTCTATATATT
Found at i:10685734 original size:22 final size:23
Alignment explanation
Indices: 10685709--10685765 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 23
10685699 TTTATATAAG
10685709 ATGTGAATATCTAC-ACTAAATA
1 ATGTGAATATCTACTACTAAATA
*
10685731 ATGT-AAGAT-T-CTACTAAATA
1 ATGTGAATATCTACTACTAAATA
10685751 ATGTGAGAT-TCTACT
1 ATGTGA-ATATCTACT
10685766 GTTAAGATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
19 1 0.04
20 13 0.46
21 6 0.21
22 6 0.21
23 2 0.07
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (23 bp):
ATGTGAATATCTACTACTAAATA
Found at i:10685748 original size:20 final size:20
Alignment explanation
Indices: 10685723--10685765 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
10685713 GAATATCTAC
10685723 ACTAAATAATGTAAGATTCT
1 ACTAAATAATGTAAGATTCT
*
10685743 ACTAAATAATGTGAGATTCT
1 ACTAAATAATGTAAGATTCT
10685763 ACT
1 ACT
10685766 GTTAAGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (20 bp):
ACTAAATAATGTAAGATTCT
Found at i:10686083 original size:10 final size:10
Alignment explanation
Indices: 10686068--10686101 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
10686058 AAATGATACG
*
10686068 ATAAAAAAAT
1 ATAAAATAAT
10686078 ATAAAATAAT
1 ATAAAATAAT
10686088 ATAAAATAAT
1 ATAAAATAAT
10686098 ATAA
1 ATAA
10686102 TTTAAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (10 bp):
ATAAAATAAT
Found at i:10686581 original size:2 final size:2
Alignment explanation
Indices: 10686574--10686598 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10686564 CTTTTTAAGA
10686574 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10686599 AAACAAATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10688531 original size:20 final size:21
Alignment explanation
Indices: 10688493--10688532 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
10688483 AATATAATAA
10688493 ATTATTTTATTATTTCTATAT
1 ATTATTTTATTATTTCTATAT
10688514 ATTA-TTTA-TATTTCCTATA
1 ATTATTTTATTATTT-CTATA
10688533 AAATTAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 9 0.50
21 4 0.22
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTATTTTATTATTTCTATAT
Found at i:10689553 original size:27 final size:27
Alignment explanation
Indices: 10689523--10689578 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
10689513 TTAATACAAA
* *
10689523 ATTAATATTATTAAAT-TTTAATTATTT
1 ATTAATATTA-TAAATATTAAATAATTT
*
10689550 ATTAATTTTATAAATATTAAATAATTT
1 ATTAATATTATAAATATTAAATAATTT
10689577 AT
1 AT
10689579 AACTTTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
ATTAATATTATAAATATTAAATAATTT
Found at i:10698960 original size:31 final size:31
Alignment explanation
Indices: 10698917--10698980 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
10698907 TGAAAATTAG
10698917 ATGCCATCGTATATGAGCCAACTCTAAAACA
1 ATGCCATCGTATATGAGCCAACTCTAAAACA
*
10698948 ATGCCATTGTATATGAGCCAACTCTAAAACA
1 ATGCCATCGTATATGAGCCAACTCTAAAACA
10698979 AT
1 AT
10698981 CTTTCACTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.23, G:0.12, T:0.25
Consensus pattern (31 bp):
ATGCCATCGTATATGAGCCAACTCTAAAACA
Found at i:10702002 original size:6 final size:6
Alignment explanation
Indices: 10701991--10702043 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 6
10701981 ATAATCTATT
* *
10701991 TATATC TATATC TATATC TATATC TATAATT TATATA TA-ATC TATAATC
1 TATATC TATATC TATATC TATATC TAT-ATC TATATC TATATC TAT-ATC
10702040 TATA
1 TATA
10702044 ATAAAATGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
5 4 0.10
6 26 0.63
7 11 0.27
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (6 bp):
TATATC
Found at i:10702014 original size:18 final size:19
Alignment explanation
Indices: 10701980--10702043 Score: 82
Period size: 18 Copynumber: 3.6 Consensus size: 19
10701970 TATACTTATT
10701980 TATAATCTAT-T-TATATC
1 TATAATCTATATATATATC
*
10701997 TAT-ATCTATATCTATATC
1 TATAATCTATATATATATC
*
10702015 TATAATTTATATATA-ATC
1 TATAATCTATATATATATC
10702033 TATAATCTATA
1 TATAATCTATA
10702044 ATAAAATGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
16 6 0.15
17 4 0.10
18 22 0.54
19 9 0.22
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (19 bp):
TATAATCTATATATATATC
Found at i:10702040 original size:25 final size:25
Alignment explanation
Indices: 10701997--10702045 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
10701987 TATTTATATC
*
10701997 TATATCTATATCTATATCTATAATT
1 TATATATATATCTATATCTATAATT
10702022 TATATATA-ATCTATAATCTATAAT
1 TATATATATATCTAT-ATCTATAAT
10702046 AAAATGATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (25 bp):
TATATATATATCTATATCTATAATT
Found at i:10702121 original size:15 final size:15
Alignment explanation
Indices: 10702101--10702130 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10702091 ATATTTTATT
10702101 GACAAAAATGTGATA
1 GACAAAAATGTGATA
10702116 GACAAAAATGTGATA
1 GACAAAAATGTGATA
10702131 AAAGGATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (15 bp):
GACAAAAATGTGATA
Found at i:10709864 original size:17 final size:17
Alignment explanation
Indices: 10709844--10709880 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
10709834 TTATATTAGT
10709844 AATATATATATATATTA
1 AATATATATATATATTA
* *
10709861 AATATATGTATATGTTA
1 AATATATATATATATTA
10709878 AAT
1 AAT
10709881 GCAATATGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (17 bp):
AATATATATATATATTA
Found at i:10718839 original size:15 final size:16
Alignment explanation
Indices: 10718816--10718848 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
10718806 AATAAGTAAT
*
10718816 AATTAAATTTTATTAA
1 AATTAAATTTTAATAA
10718832 AATT-AATTTTAATAA
1 AATTAAATTTTAATAA
10718847 AA
1 AA
10718849 ATATTCATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AATTAAATTTTAATAA
Found at i:10720687 original size:15 final size:14
Alignment explanation
Indices: 10720645--10720687 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
10720635 TAATAAAGTA
*
10720645 TTAAACTTTTAATT
1 TTAAAATTTTAATT
*
10720659 TTAAAATTTAAATT
1 TTAAAATTTTAATT
*
10720673 TTGATAATTTTAATT
1 TT-AAAATTTTAATT
10720688 ATGACAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 14 0.58
15 10 0.42
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (14 bp):
TTAAAATTTTAATT
Found at i:10722924 original size:23 final size:24
Alignment explanation
Indices: 10722898--10722956 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 24
10722888 TTTTAAATTT
10722898 ATATTATAATTTAT-TTTATTTAA
1 ATATTATAATTTATATTTATTTAA
10722921 ATA-TATAATTT-TATTTATTTAA
1 ATATTATAATTTATATTTATTTAA
* *
10722943 TTATTTTAAATTTA
1 ATATTAT-AATTTA
10722957 AATTGGCCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 1 0.03
22 19 0.63
23 5 0.17
24 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
ATATTATAATTTATATTTATTTAA
Found at i:10722927 original size:27 final size:27
Alignment explanation
Indices: 10722889--10722940 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
10722879 TTTTTAAAAT
*
10722889 TTTAAATTTAT-ATTATAATTTATTTTA
1 TTTAAATATATAATT-TAATTTATTTTA
*
10722916 TTTAAATATATAATTTTATTTATTT
1 TTTAAATATATAATTTAATTTATTT
10722941 AATTATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (27 bp):
TTTAAATATATAATTTAATTTATTTTA
Found at i:10723523 original size:20 final size:19
Alignment explanation
Indices: 10723476--10723524 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
10723466 ATATGATATG
10723476 ATTAAGTTAAAAAATAAAAA
1 ATTAA-TTAAAAAATAAAAA
* *
10723496 ATTAATTAAAAAATGAAAT
1 ATTAATTAAAAAATAAAAA
10723515 ATTATATTAA
1 ATTA-ATTAA
10723525 TTTTTAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (19 bp):
ATTAATTAAAAAATAAAAA
Found at i:10724005 original size:28 final size:28
Alignment explanation
Indices: 10723952--10724014 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
10723942 ATAACAAAAT
* * *
10723952 TAAATTAAATTCAAATTCAAATAATTTA
1 TAAATTTAATTAAAATTCAAATAATTAA
*
10723980 TAAATTTAATTAAAATT-AATTAAATTAA
1 TAAATTTAATTAAAATTCAAAT-AATTAA
10724008 T-AATTTA
1 TAAATTTA
10724015 TAAAAAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 9 0.30
28 21 0.70
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (28 bp):
TAAATTTAATTAAAATTCAAATAATTAA
Found at i:10731517 original size:2 final size:2
Alignment explanation
Indices: 10731510--10731552 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
10731500 TGTAATTGTC
10731510 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10731552 A
1 A
10731553 AAAGAGTTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10731737 original size:109 final size:107
Alignment explanation
Indices: 10731552--10731751 Score: 256
Period size: 109 Copynumber: 1.9 Consensus size: 107
10731542 ATATATATAT
* * *
10731552 AAAAGAGTTTAATAATAGAAAAAAGTTATTTAAATTAAAATTTATAAAAAAGTTAATAATAATAT
1 AAAAAAGTCTAATAATAGAAAAAAATTATTTAAATTAAAATTTATAAAAAAGTTAATAATAATAT
** *
10731617 TTTAATTAATCACTTTTAATATTTTTTTAATCTAATTATAAA
66 TTTAAACAATCACTTTTAATACTTTTTTAATCTAATTATAAA
** * * * * *
10731659 AAAAAAGTCTAATAATTTAAAAAAATTCATTTGAATTAAATTTTATAAAAACATTTACTAATGAT
1 AAAAAAGTCTAATAATAGAAAAAAATT-ATTTAAATTAAAATTTATAAAAA-AGTTAATAATAAT
*
10731724 ATTTTAAACAATCATTTTTAATACTTTT
64 ATTTTAAACAATCACTTTTAATACTTTT
10731752 AGAATTAAAA
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
107 22 0.29
108 21 0.27
109 34 0.44
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (107 bp):
AAAAAAGTCTAATAATAGAAAAAAATTATTTAAATTAAAATTTATAAAAAAGTTAATAATAATAT
TTTAAACAATCACTTTTAATACTTTTTTAATCTAATTATAAA
Found at i:10733472 original size:17 final size:19
Alignment explanation
Indices: 10733450--10733492 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 19
10733440 ATGCACATAT
*
10733450 AAAAATTAAA-TTGAAA-A
1 AAAAATAAAACTTGAAAGA
10733467 AAAAATAAAACTTGAAAGA
1 AAAAATAAAACTTGAAAGA
10733486 AAAAATA
1 AAAAATA
10733493 TACATATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.39
18 6 0.26
19 8 0.35
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (19 bp):
AAAAATAAAACTTGAAAGA
Found at i:10734617 original size:14 final size:15
Alignment explanation
Indices: 10734587--10734619 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
10734577 GACAATAAAA
10734587 AAAATTATAAATATT
1 AAAATTATAAATATT
*
10734602 AAAATT-TAAATTTT
1 AAAATTATAAATATT
10734616 AAAA
1 AAAA
10734620 ATATTGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AAAATTATAAATATT
Found at i:10738830 original size:21 final size:22
Alignment explanation
Indices: 10738804--10738864 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
10738794 GCAAAATTAC
10738804 ATCAAAAAGTTATTAAAATT-T
1 ATCAAAAAGTTATTAAAATTGT
* *
10738825 ATCAAAGA-TTATCAAAATTGT
1 ATCAAAAAGTTATTAAAATTGT
* *
10738846 ATC-AATAGTTACTAAAATT
1 ATCAAAAAGTTATTAAAATT
10738865 ATGTTGTAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 13 0.39
21 20 0.61
ACGTcount: A:0.49, C:0.08, G:0.07, T:0.36
Consensus pattern (22 bp):
ATCAAAAAGTTATTAAAATTGT
Found at i:10738898 original size:21 final size:21
Alignment explanation
Indices: 10738874--10738914 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10738864 TATGTTGTAA
*
10738874 GTTACCAAACTAATATTGAAG
1 GTTACCAAAATAATATTGAAG
*
10738895 GTTACCAAAATTATATTGAA
1 GTTACCAAAATAATATTGAA
10738915 TATCACCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (21 bp):
GTTACCAAAATAATATTGAAG
Found at i:10738945 original size:21 final size:20
Alignment explanation
Indices: 10738921--10738989 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
10738911 TGAATATCAC
10738921 CAAAATTTTACTAAATGTTAT
1 CAAAATTTTAC-AAATGTTAT
*
10738942 C-AAATTTCTAACAAATGTTAC
1 CAAAATTT-T-ACAAATGTTAT
* *
10738963 CAAAACATTTA-AAAAGTTAT
1 CAAAA-TTTTACAAATGTTAT
10738983 CAAAATT
1 CAAAATT
10738990 AAATTATATC
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
19 1 0.03
20 18 0.46
21 12 0.31
22 6 0.15
23 2 0.05
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (20 bp):
CAAAATTTTACAAATGTTAT
Found at i:10740884 original size:62 final size:63
Alignment explanation
Indices: 10740800--10740940 Score: 140
Period size: 62 Copynumber: 2.2 Consensus size: 63
10740790 AAAGACTCGA
* * * * *
10740800 CGGATTCTTGAAGGCGTTTTTTGCCCAAAATGCCTTTAATATTCCACACAATAAATTTT-TGGT
1 CGGATTATTGAAGGTG-ATTTTGCCAAAAATGCCATTAATATTCCACACAATAAATTTTATGGT
* ** * ** * *
10740863 GGGATTATTGAAGGTGATTTTGGTAAAAATGTCATTAATATTTTAGATAATAAATTTTGATGGT
1 CGGATTATTGAAGGTGATTTTGCCAAAAATGCCATTAATATTCCACACAATAAATTTT-ATGGT
10740927 CGGATTATTGAAGG
1 CGGATTATTGAAGG
10740941 CGGTTATATC
Statistics
Matches: 62, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
62 32 0.52
63 13 0.21
64 17 0.27
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (63 bp):
CGGATTATTGAAGGTGATTTTGCCAAAAATGCCATTAATATTCCACACAATAAATTTTATGGT
Found at i:10741344 original size:304 final size:303
Alignment explanation
Indices: 10740684--10741505 Score: 1130
Period size: 304 Copynumber: 2.7 Consensus size: 303
10740674 AGTAACGCCC
*
10740684 TTCAAGGCGTTACCCATAGGAAAACGCCCTTTATAATCCATTCGATTAATTTTT-GTTGGTATTA
1 TTCAAGGCGTTACCCATAGGAAAACGCCCTTCATAATCCATTCGATTAATTTTTAGTTGGTATTA
* *
10740748 TTGAAGGTGTTTTTTTAAAATGCCTTTAATAATTTATACAAAAAAGACTCGACGGATTCTTGAAG
66 TTGAAGGTGTTTTTTTAAAACGCCTTTAATAATTTATACAAAAAAGACTTGACGGATTCTTGAAG
* * ** **
10740813 GCGTTTTTTGCCCAAAATGCCTTTAATATTCCACACAATAAATTTTTGGTGGGATTATTGAAGGT
131 GCATTTTTTACCCAAAACACCTTTAATATTCCACACAATAAATTTTTAATGGGATTATTGAAGGT
* * * * *
10740878 GATTTTGGTAAAAATGTCATTAATATTTTAGATAATAAATTTTGATGGTCGGATTATTGAAGGCG
196 AATTTTGGTAAAAATGCCATTAATATTCTAGAAAATAAATTTTGATGGTAGGATTATTGAAGGCG
* *
10740943 GTTATATCCAAAAACGCCTTCAATAACATTTTGTTAGGGATTA
261 GTTATATCCAAAAACGCCTTCAATAACATTTTATTAGAGATTA
* *
10740986 TTCAAGACGTTACCCATAGGAAAATGCCCTTCATAATCCATTCGATTAATTTTTAGTTGGTATTA
1 TTCAAGGCGTTACCCATAGGAAAACGCCCTTCATAATCCATTCGATTAATTTTTAGTTGGTATTA
* *
10741051 TTGAAGGTATTTTTTTAAAACGCCTTTAATAATTTATACAAAAAAGACTTGACAGATTCTTGAAG
66 TTGAAGGTGTTTTTTTAAAACGCCTTTAATAATTTATACAAAAAAGACTTGACGGATTCTTGAAG
* * * * *
10741116 GTATTTTTTACCCAAAACACTTTTAATATTTCACATAATAAATTTTTAATTGGATTATTGAAGGT
131 GCATTTTTTACCCAAAACACCTTTAATATTCCACACAATAAATTTTTAATGGGATTATTGAAGGT
*
10741181 AATTTTGGTAAAAAATGCCATTAATATTCTAGAAAATAAATTTTGATGGTAGGATTATTGAAGGT
196 AATTTTGGT-AAAAATGCCATTAATATTCTAGAAAATAAATTTTGATGGTAGGATTATTGAAGGC
* *
10741246 GGTTATATCCAAAAATGCTTTCAATAACATTTTATTAGAGATTA
260 GGTTATATCCAAAAACGCCTTCAATAACATTTTATTAGAGATTA
* * * *
10741290 TTTAAGGCGTTACCCGTAGGAAAACGCCATTCATAATCCATTCAATTAATTTTTAGTTGGTATTA
1 TTCAAGGCGTTACCCATAGGAAAACGCCCTTCATAATCCATTCGATTAATTTTTAGTTGGTATTA
* * ** * * *
10741355 TTGAAGGCGTTTTTTTAAAAC-ACTTTCAATAATCCATATAAAAAAGGCATGACGGATTCTTGAA
66 TTGAAGGTGTTTTTTTAAAACGCCTTT-AATAATTTATACAAAAAAGACTTGACGGATTCTTGAA
* * ** * **
10741419 GGCATTTTTTTTTCTCAAAATGCCTTCAATATTCCACACAATTAAA-TTTT-GGGGTGATTATTG
130 GGCA--TTTTTTACCCAAAACACCTTTAATATTCCACACAA-TAAATTTTTAATGG-GATTATTG
*
10741482 AAGGTGATTTTGGTTAAAAATGCC
191 AAGGTAATTTTGG-TAAAAATGCC
10741506 TTCAAAATTT
Statistics
Matches: 456, Mismatches: 56, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
302 51 0.11
303 137 0.30
304 202 0.44
305 1 0.00
306 60 0.13
307 5 0.01
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.38
Consensus pattern (303 bp):
TTCAAGGCGTTACCCATAGGAAAACGCCCTTCATAATCCATTCGATTAATTTTTAGTTGGTATTA
TTGAAGGTGTTTTTTTAAAACGCCTTTAATAATTTATACAAAAAAGACTTGACGGATTCTTGAAG
GCATTTTTTACCCAAAACACCTTTAATATTCCACACAATAAATTTTTAATGGGATTATTGAAGGT
AATTTTGGTAAAAATGCCATTAATATTCTAGAAAATAAATTTTGATGGTAGGATTATTGAAGGCG
GTTATATCCAAAAACGCCTTCAATAACATTTTATTAGAGATTA
Found at i:10745037 original size:80 final size:79
Alignment explanation
Indices: 10744904--10745151 Score: 302
Period size: 80 Copynumber: 3.1 Consensus size: 79
10744894 AGAAACACCA
* * * *
10744904 TTCAGCAAACCATTCAACATATGATTTAGCCCCCCAATATCATACAAAACCATTCAACAAAACAA
1 TTCAGCAAACAATTCAGCATATGATTCAG-CCCCCAATATCATACAATACCATTCAACAAAACAA
*
10744969 TGTCAAACAATAAGG
65 TATCAAACAATAAGG
* *
10744984 TTCAGCAAACAATTCAGCATATGATTCAGCCTCCCAATATCATACAATACCATTCGACAATACAA
1 TTCAGCAAACAATTCAGCATATGATTCAGCC-CCCAATATCATACAATACCATTCAACAAAACAA
* *
10745049 TATCATACAACAAGG
65 TATCAAACAATAAGG
* * * * *
10745064 TTTAGCAAACTATTTAGCATACGATTCAGCCCCCTAATATCATACAATACCATTCAGCAAAA-AA
1 TTCAGCAAACAATTCAGCATATGATTCAGCCCCC-AATATCATACAATACCATTCAACAAAACAA
* * *
10745128 AAT-AGACAATAAGA
65 TATCAAACAATAAGG
10745142 TTCAGCAAAC
1 TTCAGCAAAC
10745152 CATAATTTTA
Statistics
Matches: 145, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
78 17 0.12
79 9 0.06
80 119 0.82
ACGTcount: A:0.44, C:0.25, G:0.08, T:0.23
Consensus pattern (79 bp):
TTCAGCAAACAATTCAGCATATGATTCAGCCCCCAATATCATACAATACCATTCAACAAAACAAT
ATCAAACAATAAGG
Found at i:10755328 original size:136 final size:134
Alignment explanation
Indices: 10755093--10755547 Score: 495
Period size: 134 Copynumber: 3.4 Consensus size: 134
10755083 ATTTTTTATA
* * ** ** **
10755093 CAAATGTCACCAAAGCAATGATATTTTTCTCATAAAAATGCCACTAAGCTA-C-G--TCTCAAAG
1 CAAATGCCACCAAAGCAACGGCATTTTTCTCATAAAAACACCACTAAATTAGCGGCATCTCAAAG
* * * * ** ** *
10755154 ACACAAACACCGTTAATATTTAGGCATTTTTAGATACAAACACCTTTAAAGTAGCGGCGTTTTCA
66 ATACAAACGCTGCTAATATAGAGGCATTTTTAGATACAAATGCCTCTAAAGTAGCGGCGTTTTCA
* *
10755219 TTTA
131 ATTG
* * * *
10755223 CAAATGCCACCAAAGCAACGGCGTTTTTTTTCATAAAAACGCTACTAAATTAGCGGCATCTCAAA
1 CAAATGCCACCAAAGCAACGGC-ATTTTTCTCATAAAAACACCACTAAATTAGCGGCATCTCAAA
*
10755288 GATACAAAACGCTGCTAATATAGAGGCATTTTTAGATACAAATGCCTCTAAAGTAACGGCGTTTT
65 GATAC-AAACGCTGCTAATATAGAGGCATTTTTAGATACAAATGCCTCTAAAGTAGCGGCGTTTT
10755353 CAATTG
129 CAATTG
* * * * * *
10755359 TAAACGTCACCAAAGCAATGGCATTTTTCTCATAAAAATACCACTAAATTAGTGGCATCTCAAAG
1 CAAATGCCACCAAAGCAACGGCATTTTTCTCATAAAAACACCACTAAATTAGCGGCATCTCAAAG
* * * * * *
10755424 ATACAAATGCTGCTAATATAGAGGCATTTTCAGATGCAAATGCCTCTAAAGCAGTGGCATTTTCA
66 ATACAAACGCTGCTAATATAGAGGCATTTTTAGATACAAATGCCTCTAAAGTAGCGGCGTTTTCA
10755489 ATTG
131 ATTG
*** * *
10755493 CAAATGCCACCAAAGCAACAATATTTTTCTCATAAAAACACAACTAATTTAGCGG
1 CAAATGCCACCAAAGCAACGGCATTTTTCTCATAAAAACACCACTAAATTAGCGG
10755548 TGTTTCAAAG
Statistics
Matches: 269, Mismatches: 50, Indels: 8
0.82 0.15 0.02
Matches are distributed among these distances:
130 18 0.07
131 23 0.09
132 1 0.00
133 1 0.00
134 102 0.38
135 52 0.19
136 72 0.27
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (134 bp):
CAAATGCCACCAAAGCAACGGCATTTTTCTCATAAAAACACCACTAAATTAGCGGCATCTCAAAG
ATACAAACGCTGCTAATATAGAGGCATTTTTAGATACAAATGCCTCTAAAGTAGCGGCGTTTTCA
ATTG
Found at i:10755500 original size:33 final size:33
Alignment explanation
Indices: 10755446--10755509 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
10755436 CTAATATAGA
* *
10755446 GGCATTTTCAGATGCAAATGCCTCTAAAGCAGT
1 GGCATTTTCAGATGCAAATGCCACCAAAGCAGT
10755479 GGCATTTTCA-ATTGCAAATGCCACCAAAGCA
1 GGCATTTTCAGA-TGCAAATGCCACCAAAGCA
10755510 ACAATATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (33 bp):
GGCATTTTCAGATGCAAATGCCACCAAAGCAGT
Found at i:10763314 original size:3 final size:3
Alignment explanation
Indices: 10763306--10763357 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
10763296 TTGGGCAGTG
10763306 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10763354 ATA A
1 ATA A
10763358 CATACAAGAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10763762 original size:14 final size:15
Alignment explanation
Indices: 10763740--10763776 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
10763730 AAAATAAACG
10763740 AATAAATAA-AAGTTA
1 AATAAATAATAA-TTA
10763755 AA-AAATAATAATTA
1 AATAAATAATAATTA
10763769 AATAAATA
1 AATAAATA
10763777 GGTAAAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AATAAATAATAATTA
Found at i:10764687 original size:3 final size:3
Alignment explanation
Indices: 10764679--10764734 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
10764669 TAAAATTTCA
10764679 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10764727 ATT ATT AT
1 ATT ATT AT
10764735 GTTTTATTCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:10777103 original size:109 final size:109
Alignment explanation
Indices: 10776978--10777566 Score: 432
Period size: 109 Copynumber: 5.4 Consensus size: 109
10776968 AAAAAACTTA
*
10776978 ATTTTAAGGAAAAATTGATATTCT-AAC-TTTTCCTCAAATCTTTAAAATTGTTTTCGCTTTAAG
1 ATTTTAAGGAAAAATTGATATTCTAAACTTTTTCCTCAAAT-TTT-AAATTATTTT-GCTTTAAG
* * **
10777041 AAAAAATGATCTTTTAACTTTTTTGTCAAAATTTTGAAATTACTTCC
63 AAAAAATGATCTTTTAACTTTTTTCTCAAAATTTTGAAATTATTTTT
* *
10777088 ATTTTAA-GAAAAATTGATAGTTC--AACTTTTTCATCAAAATTTTAAATTATTTTTGTTTTAAG
1 ATTTTAAGGAAAAATTGATA-TTCTAAACTTTTTCCTC-AAATTTTAAATTA-TTTTGCTTTAA-
* * * * *
10777150 GAAAAATAT-ATAC-CTCAACTTTTTCCTC-AAATTTTGAAATTGTTTTC
62 GAAAAA-ATGAT-CTTTTAACTTTTTTCTCAAAATTTTGAAATTATTTTT
* ** * * * * *
10777197 ATTTTAATGAAAAATCAACACTTC--AATTTTTTTCTCAAAACTTTGAAATTATTTT-CTTTTAG
1 ATTTTAAGGAAAAATTGATA-TTCTAAACTTTTTCCTC-AAA-TTTTAAATTATTTTGCTTTAAG
* * * *
10777259 AAAAAGTGATATTTT-ATTTTTTTCTTAAAATTTTGAAATTATTTTT
63 AAAAAATGATCTTTTAACTTTTTTCTCAAAATTTTGAAATTATTTTT
* * * *
10777305 ATTCT-AGGAAAAATTGATATT-TGAACTTTTTCCTTAAAATTTTAAATTATTTTTGTTTTAA-A
1 ATTTTAAGGAAAAATTGATATTCTAAACTTTTTCC-TCAAATTTTAAATTA-TTTTGCTTTAAGA
* * * * *
10777367 GAAAAATTAACATTTCAACTTTTTTCT-TAAATTATGAAATTATTTTT
64 -AAAAATGATC-TTTTAACTTTTTTCTCAAAATTTTGAAATTATTTTT
* * * *
10777414 -TTTTAA-GAAAAATTTGATATT-TCAACTTTATCTTTAAAATTTTGAAATTATTTT-CTTTCAA
1 ATTTTAAGGAAAAA-TTGATATTCTAAACTTTTTC-CTCAAATTTT-AAATTATTTTGCTTT--A
* * *
10777475 AGAAAAATTGA-CATTTTAACTTTTTTC-CAAATTTTTAAAATTATTTTT
61 AGAAAAAATGATC-TTTTAACTTTTTTCTCAAAATTTTGAAATTATTTTT
* *
10777523 GTTTTAAGGAAAAATTAATA-TCTAAACTTTTTCCTCAAAATTTT
1 ATTTTAAGGAAAAATTGATATTCTAAACTTTTTCCTC-AAATTTT
10777567 CAAAATTTAA
Statistics
Matches: 382, Mismatches: 65, Indels: 64
0.75 0.13 0.13
Matches are distributed among these distances:
106 11 0.03
107 35 0.09
108 53 0.14
109 138 0.36
110 122 0.32
111 23 0.06
ACGTcount: A:0.36, C:0.10, G:0.06, T:0.48
Consensus pattern (109 bp):
ATTTTAAGGAAAAATTGATATTCTAAACTTTTTCCTCAAATTTTAAATTATTTTGCTTTAAGAAA
AAATGATCTTTTAACTTTTTTCTCAAAATTTTGAAATTATTTTT
Found at i:10777135 original size:54 final size:54
Alignment explanation
Indices: 10776978--10777566 Score: 455
Period size: 55 Copynumber: 10.8 Consensus size: 54
10776968 AAAAAACTTA
* * *
10776978 ATTTTAAGGAAAAATTGATA-TTCTAACTTTTCCTC-AAATCTTTAAAATTGTTTTC
1 ATTTTAA-GAAAAATTGATATTTC-AACTTTTTCTCAAAAT-TTTGAAATTATTTTC
** * * * * * *
10777033 GCTTTAAGAAAAAATGATCTTTTAACTTTTTTGTCAAAATTTTGAAATTACTTCC
1 ATTTTAAGAAAAATTGATATTTCAAC-TTTTTCTCAAAATTTTGAAATTATTTTC
* *
10777088 ATTTTAAGAAAAATTGATAGTTCAACTTTTTCATCAAAATTTT-AAATTATTTTT
1 ATTTTAAGAAAAATTGATATTTCAACTTTTTC-TCAAAATTTTGAAATTATTTTC
* ** *
10777142 GTTTTAAGGAAAAATAT-ATACCTCAACTTTTTCCTC-AAATTTTGAAATTGTTTTC
1 ATTTTAA-GAAAAAT-TGATATTTCAACTTTTT-CTCAAAATTTTGAAATTATTTTC
** * * * *
10777197 ATTTTAATGAAAAATCAACACTTCAATTTTTTTCTCAAAACTTTGAAATTATTTTC
1 ATTTTAA-GAAAAATTGATATTTCAA-CTTTTTCTCAAAATTTTGAAATTATTTTC
* * ** * *
10777253 -TTTT-AGAAAAAGTGATATTTTATTTTTTTCTTAAAATTTTGAAATTATTTTT
1 ATTTTAAGAAAAATTGATATTTCAACTTTTTCTCAAAATTTTGAAATTATTTTC
* * * * *
10777305 ATTCTAGGAAAAATTGATATTTGAACTTTTTCCTTAAAATTTT-AAATTATTTTT
1 ATTTTAAGAAAAATTGATATTTCAACTTTTT-CTCAAAATTTTGAAATTATTTTC
* * * * *
10777359 GTTTTAAAGAAAAATTAACATTTCAACTTTTT-TCTTAAATTATGAAATTATTTT-
1 ATTTT-AAGAAAAATTGATATTTCAACTTTTTCTC-AAAATTTTGAAATTATTTTC
* * *
10777413 TTTTTAAGAAAAATTTGATATTTCAACTTTATCTTTAAAATTTTGAAATTATTTTC
1 ATTTTAAGAAAAA-TTGATATTTCAACTTTTTC-TCAAAATTTTGAAATTATTTTC
* * * * * *
10777469 -TTTCAAAGAAAAATTGACATTTTAACTTTTT-TCCAAATTTTTAAAATTATTTTT
1 ATTT-TAAGAAAAATTGATATTTCAACTTTTTCT-CAAAATTTTGAAATTATTTTC
* * * *
10777523 GTTTTAAGGAAAAATTAATATCTAAACTTTTTCCTCAAAATTTT
1 ATTTTAA-GAAAAATTGATATTTCAACTTTTT-CTCAAAATTTT
10777567 CAAAATTTAA
Statistics
Matches: 427, Mismatches: 80, Indels: 53
0.76 0.14 0.09
Matches are distributed among these distances:
52 26 0.06
53 24 0.06
54 118 0.28
55 213 0.50
56 45 0.11
57 1 0.00
ACGTcount: A:0.36, C:0.10, G:0.06, T:0.48
Consensus pattern (54 bp):
ATTTTAAGAAAAATTGATATTTCAACTTTTTCTCAAAATTTTGAAATTATTTTC
Found at i:10777250 original size:25 final size:24
Alignment explanation
Indices: 10777222--10777310 Score: 63
Period size: 25 Copynumber: 3.5 Consensus size: 24
10777212 CAACACTTCA
*
10777222 ATTTTTTTCTCAAAACTTTGAAATT
1 ATTTTTTTCT-AAAAATTTGAAATT
** *
10777247 ATTTTCTTT-TAGAAAAAGTGATATTTT
1 ATTTT-TTTCTA-AAAATTTGA-A-ATT
*
10777274 ATTTTTTTCTTAAAATTTTGAAATT
1 ATTTTTTTC-TAAAAATTTGAAATT
10777299 ATTTTTATTCTA
1 ATTTTT-TTCTA
10777311 GGAAAAATTG
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
24 1 0.02
25 22 0.45
26 11 0.22
27 13 0.27
28 2 0.04
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (24 bp):
ATTTTTTTCTAAAAATTTGAAATT
Found at i:10778542 original size:10 final size:10
Alignment explanation
Indices: 10778527--10778568 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
10778517 TAATATAATT
10778527 AATAAACAAA
1 AATAAACAAA
*
10778537 AATAAATAAA
1 AATAAACAAA
*
10778547 AA-AACCAAA
1 AATAAACAAA
*
10778556 AATAAACCAA
1 AATAAACAAA
10778566 AAT
1 AAT
10778569 TGAGTTAAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (10 bp):
AATAAACAAA
Found at i:10778653 original size:3 final size:3
Alignment explanation
Indices: 10778645--10778677 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
10778635 TCTAAGCTTA
10778645 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10778678 CTTAAAGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10779661 original size:126 final size:126
Alignment explanation
Indices: 10779525--10779785 Score: 423
Period size: 126 Copynumber: 2.1 Consensus size: 126
10779515 TTCAATGAGA
* * * *
10779525 GGATCAATCATGTCTTTTGAAACCCTTGTACCAATTGATTCATATAAGGAGGGGATCAATTGGTT
1 GGATCAATCATGTCCTTTGAAACCCTTGTACCAATTGATTCATACAAGGAGAGGATCAATTGATT
* * *
10779590 TTCATAAAAATCCCATGAGGCAATCTACTGGTCAAAAAAGTGATCAATCCTTTAGAGGAAG
66 TTCATAAAAATCCCATGAGGCAACCTACTAGTAAAAAAAGTGATCAATCCTTTAGAGGAAG
* **
10779651 GGATTAATCATGTCCTTTGAAACCCTTGTACCAATTGATTCATACAAGGAGAGGATTGATTGATT
1 GGATCAATCATGTCCTTTGAAACCCTTGTACCAATTGATTCATACAAGGAGAGGATCAATTGATT
*
10779716 TTCATAAAAATCCCATGAGGCAACCTACTAGTAAAAAAAGTGATCAATCCTTTAGAGGAGG
66 TTCATAAAAATCCCATGAGGCAACCTACTAGTAAAAAAAGTGATCAATCCTTTAGAGGAAG
10779777 GGATCAATC
1 GGATCAATC
10779786 CGTTTCATGT
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 123 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.29
Consensus pattern (126 bp):
GGATCAATCATGTCCTTTGAAACCCTTGTACCAATTGATTCATACAAGGAGAGGATCAATTGATT
TTCATAAAAATCCCATGAGGCAACCTACTAGTAAAAAAAGTGATCAATCCTTTAGAGGAAG
Found at i:10780707 original size:12 final size:12
Alignment explanation
Indices: 10780690--10780727 Score: 76
Period size: 12 Copynumber: 3.2 Consensus size: 12
10780680 ATAGAGAAGG
10780690 ATAAGGAGGAAT
1 ATAAGGAGGAAT
10780702 ATAAGGAGGAAT
1 ATAAGGAGGAAT
10780714 ATAAGGAGGAAT
1 ATAAGGAGGAAT
10780726 AT
1 AT
10780728 GATGAACACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.32, T:0.18
Consensus pattern (12 bp):
ATAAGGAGGAAT
Found at i:10788649 original size:3 final size:3
Alignment explanation
Indices: 10788641--10788666 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10788631 CAAAATACTT
10788641 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
10788667 TTCTGGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10795176 original size:22 final size:22
Alignment explanation
Indices: 10795151--10795199 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
10795141 GTTCTTACTT
*
10795151 TCTTTAAGTATTTTTCATTCTA
1 TCTTCAAGTATTTTTCATTCTA
10795173 TCTTCAAGTATTTTTCATTCTA
1 TCTTCAAGTATTTTTCATTCTA
10795195 TCTTC
1 TCTTC
10795200 TTTAGCCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.20, C:0.18, G:0.04, T:0.57
Consensus pattern (22 bp):
TCTTCAAGTATTTTTCATTCTA
Found at i:10800540 original size:44 final size:41
Alignment explanation
Indices: 10800486--10800578 Score: 104
Period size: 42 Copynumber: 2.2 Consensus size: 41
10800476 AATATTTTTT
10800486 AATT-TTATTTAAT-TTTATATTTATATATGTATTATA-TTAATAA
1 AATTATTATTTAATATTTA-ATTTA-ATA--TATTA-ACTTAATAA
10800529 AATTATTATTTAATACTTTAATTTAATATATTAACTTAATAA
1 AATTATTATTTAATA-TTTAATTTAATATATTAACTTAATAA
10800571 AA-TATTAT
1 AATTATTAT
10800579 GTACAATTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
41 7 0.15
42 14 0.30
43 4 0.09
44 12 0.26
45 5 0.11
46 4 0.09
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (41 bp):
AATTATTATTTAATATTTAATTTAATATATTAACTTAATAA
Found at i:10800706 original size:17 final size:17
Alignment explanation
Indices: 10800681--10800715 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
10800671 AAATAATATT
* *
10800681 TTAATATCAAATTAAAA
1 TTAAAATCAAATAAAAA
10800698 TTAAAATCAAATAAAAA
1 TTAAAATCAAATAAAAA
10800715 T
1 T
10800716 ATTAAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TTAAAATCAAATAAAAA
Found at i:10806869 original size:25 final size:25
Alignment explanation
Indices: 10806841--10806890 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
10806831 CAACTAAGTT
*
10806841 CAATACTTTTGATAAGTTTAATATC
1 CAATACTTTCGATAAGTTTAATATC
10806866 CAATACTTTCGATAAGTTTAATATC
1 CAATACTTTCGATAAGTTTAATATC
10806891 ATGTATTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (25 bp):
CAATACTTTCGATAAGTTTAATATC
Found at i:10808546 original size:25 final size:24
Alignment explanation
Indices: 10808494--10808548 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
10808484 TCTTCAAAAT
10808494 AAAAAACTTGTTTGACTTGGGATG
1 AAAAAACTTGTTTGACTTGGGATG
*
10808518 AAAAAACTTGTTTGACTTGTGATG
1 AAAAAACTTGTTTGACTTGGGATG
10808542 AAAAAAC
1 AAAAAAC
10808549 ATAAGGTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (24 bp):
AAAAAACTTGTTTGACTTGGGATG
Found at i:10810386 original size:21 final size:21
Alignment explanation
Indices: 10810362--10810405 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
10810352 CTTTGTCACT
10810362 TTGAATATCAAG-ATCACCAAC
1 TTGAATATC-AGTATCACCAAC
*
10810383 TTGAGTATCAGTATCACCAAC
1 TTGAATATCAGTATCACCAAC
10810404 TT
1 TT
10810406 ACGTAATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (21 bp):
TTGAATATCAGTATCACCAAC
Found at i:10812499 original size:237 final size:237
Alignment explanation
Indices: 10812069--10813260 Score: 1194
Period size: 237 Copynumber: 5.0 Consensus size: 237
10812059 TAATAATTTT
* * * * * * *
10812069 AATAATTTTTGTATATAATTATTGAAGGCA-TTTCTTGAGAAAAAATACATTCAATAA-TTGCTT
1 AATAATTTTTGTACAGAATTATTGAAGG-AGTTTCTTTAGAACAAATGCCTTCAATAATTTTC-T
* * * *
10812132 TTTAAAAATTGTTTGAGATTATTAAAGGTGTCTTCTAGT-AGAAAACGCCTTTAATATTTCACTA
64 TTTAAAAATTATTTGAGATTATTAAAGGCGTCTTCTAATGA-AAAACGCCTTTAATATTGCACTA
* * * * * *
10812196 CTAAAATTTTAAGACGATTATTGAAGGCA-TTTATTCCAAAAAAATACCTTCATTAATTTATTCT
128 CTAAAATTTTAAGATGGTTATTGAAGG-AGTTTATTCTAGAAAAATACCTTCACTAATTTGTTCT
*
10812260 AATTCTTTAAAGAATTTATTGAAGGTATTTTTTGAATTATTCTCTTTC
192 AATT-TTTAAAGAATTTATTGAAGGTATTTTTTGAATTATACTC-TTC
* * * *
10812308 AATAATTTTTTTACAGAATTATTGAATGAGTTTTTTTAGAACAAATGCCTTTAATAA-TTTC-TT
1 AATAATTTTTGTACAGAATTATTGAAGGAGTTTCTTTAGAACAAATGCCTTCAATAATTTTCTTT
* * *
10812371 TAAAAATTATTT-AGGTTTATTAAAGGCATCTTCTAATGAAAAACGCCTTTAATATTGCACTACC
66 TAAAAATTATTTGA-GATTATTAAAGGCGTCTTCTAATGAAAAACGCCTTTAATATTGCACTACT
* * * *
10812435 AAAATTTTAAGATGGTTAGTCAAGGAGTTTATTTTAGAAAAATACCTTCACTAATTCGTTCTAA-
130 AAAATTTTAAGATGGTTATTGAAGGAGTTTATTCTAGAAAAATACCTTCACTAATTTGTTCTAAT
* * * * *
10812499 TTTGAAGGAATTTATTGAAGGTATTTTTTGCATTAAACGACTTC
195 TTTTAAAGAATTTATTGAAGGTATTTTTTGAATTATAC-TCTTC
* * * * * * *
10812543 AATAATTTTTGTAGATAATTATTAAAGGTGTTTCATGAGAAAAAATGCCTTCAATAATTTTCTTT
1 AATAATTTTTGTACAGAATTATTGAAGGAGTTTCTTTAGAACAAATGCCTTCAATAATTTTCTTT
* * * ** *
10812608 TAAAAATTGTTT-ATGATTATTTAAGGTGTCTTCTAATAGAAAAA-GCCTTTAATATTATATTAC
66 TAAAAATTATTTGA-GATTATTAAAGGCGTCTTCTAAT-GAAAAACGCCTTTAATATTGCACTAC
* * * * * * * *
10812671 TAAAATTATAATATGGTTATTAAATGCGTTTATTCTA-AAAAATGCCTTCACTAATTCGTTTTAA
129 TAAAATTTTAAGATGGTTATTGAAGGAGTTTATTCTAGAAAAATACCTTCACTAATTTGTTCTAA
* * *
10812735 TTTTTGAAGAAATTTATTAAAGGCATTTTTTGAATTATACTCCTTC
194 TTTTTAAAG-AATTTATTGAAGGTATTTTTTGAATTATACT-CTTC
* * *
10812781 AATAATTTTTTTTACAGAATTATTGAAGGAGTTTTTTTAGAACAAATGCTTTCAATAATTTTCTT
1 AATAA-TTTTTGTACAGAATTATTGAAGGAGTTTCTTTAGAACAAATGCCTTCAATAATTTTCTT
* * * * * * *
10812846 TTAAAAAATATTTGAGATTATTAAAGGCGTTTTCTAGTGAAAAACGACTTAAATATTGCATTACC
65 TTAAAAATTATTTGAGATTATTAAAGGCGTCTTCTAATGAAAAACGCCTTTAATATTGCACTACT
*** * * *
10812911 AAAATTTTAAGACAATTAGTT-AAGGCGTTTATTCCAGAAAAATACTTTCACTAATTTGTTCTAA
130 AAAATTTTAAGATGGTTA-TTGAAGGAGTTTATTCTAGAAAAATACCTTCACTAATTTGTTCTAA
* * * *
10812975 -TTTGAAAGAATTTATTGAAGGTATGTTTTGCATTA-AATGCCTTC
194 TTTTTAAAGAATTTATTGAAGGTATTTTTTGAATTATACT--CTTC
* * * * * *
10813019 AATAATTTTTGTAGATAATTATTGAAGGCGTTTCTTAAGAA-AAACGCCTTCAATAATTTTTTTT
1 AATAATTTTTGTACAGAATTATTGAAGGAGTTTCTTTAGAACAAATGCCTTCAATAATTTTCTTT
* * * * ** *
10813083 TAAAAATTATTTGAGATTATTAAAGGCATCTTTTAA-CAGAAAACTCCTTTAATATTTAACTATT
66 TAAAAATTATTTGAGATTATTAAAGGCGTCTTCTAATGA-AAAACGCCTTTAATATTGCACTACT
* * *
10813147 AAAATTTTAAAATGGTTATTGAAGGCA-TTTATTCTAGATAAATACATTCACTAATTTGTTCTAA
130 AAAATTTTAAGATGGTTATTGAAGG-AGTTTATTCTAGAAAAATACCTTCACTAATTTGTTCTAA
* * * * *
10813211 TTTTTTAAGAAATTTATGGAAGGTGTTTTTTGTATTATACGCCTTC
194 TTTTTAAAG-AATTTATTGAAGGTATTTTTTGAATTATAC-TCTTC
10813257 AATA
1 AATA
10813261 TTCCACTATT
Statistics
Matches: 779, Mismatches: 150, Indels: 49
0.80 0.15 0.05
Matches are distributed among these distances:
235 84 0.11
236 153 0.20
237 228 0.29
238 113 0.15
239 175 0.22
240 26 0.03
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (237 bp):
AATAATTTTTGTACAGAATTATTGAAGGAGTTTCTTTAGAACAAATGCCTTCAATAATTTTCTTT
TAAAAATTATTTGAGATTATTAAAGGCGTCTTCTAATGAAAAACGCCTTTAATATTGCACTACTA
AAATTTTAAGATGGTTATTGAAGGAGTTTATTCTAGAAAAATACCTTCACTAATTTGTTCTAATT
TTTAAAGAATTTATTGAAGGTATTTTTTGAATTATACTCTTC
Found at i:10813039 original size:476 final size:473
Alignment explanation
Indices: 10812069--10813260 Score: 1597
Period size: 476 Copynumber: 2.5 Consensus size: 473
10812059 TAATAATTTT
* * * * *
10812069 AATAATTTTTGTATATAATTATTGAAGGCATTTCTTGAGAAAAAATACATTCAATAA-TTGCTTT
1 AATAATTTTTGTAGATAATTATTGAAGGCGTTTCTTGAGAAAAAATGCCTTCAATAATTTTC-TT
* *
10812133 TTAAAAATTGTTTGAGATTATTAAAGGTGTCTTCTAGTAGAAAACGCCTTTAATATTTCACTACT
65 TTAAAAATTGTTTGAGATTATTAAAGGTGTCTTCTAATAGAAAACGCCTTTAATATTTAACTACT
* * * * * *
10812198 AAAATTTTAAGACGATTATTGAAGGCATTTATTCCAAAAAAATACCTTCATTAATTTATTCTAAT
130 AAAATTTTAAAATGGTTATTGAAGGCATTTATT-CTAAAAAATACCTTCACTAATTTGTTCTAAT
* *
10812263 TCTTTAAAG-AATTTATTGAAGGTATTTTTTGAATTATTCTCTTTCAATAATTTTTTTACAGAAT
194 T-TTTAAAGAAATTTATTGAAGGTATTTTTTGAATTATACTCCTTCAATAATTTTTTTACAGAAT
* * *
10812327 TATTGAATGAGTTTTTTTAGAACAAATGCCTTTAATAATTTCTTTAAAAATTATTTAGGTTTATT
258 TATTGAAGGAGTTTTTTTAGAACAAATGCCTTTAATAATTTCTTTAAAAAATATTTAGGATTATT
* * ***
10812392 AAAGGCATCTTCTAATGAAAAACGCCTTTAATATTGCACTACCAAAATTTTAAGATGGTTAGTCA
323 AAAGGCATCTTCTAATGAAAAACGACTTAAATATTGCACTACCAAAATTTTAAGACAATTAGTCA
** *
10812457 AGGAGTTTATTTTAGAAAAATACCTTCACTAATTCGTTCTAATTTGAAGGAATTTATTGAAGGTA
388 AGGAGTTTATTCCAGAAAAATACCTTCACTAATTCGTTCTAATTTGAAAGAATTTATTGAAGGTA
*
10812522 TTTTTTGCATTAAACGACTTC
453 TGTTTTGCATTAAACGACTTC
* * *
10812543 AATAATTTTTGTAGATAATTATTAAAGGTGTTTCATGAGAAAAAATGCCTTCAATAATTTTCTTT
1 AATAATTTTTGTAGATAATTATTGAAGGCGTTTCTTGAGAAAAAATGCCTTCAATAATTTTCTTT
* * *
10812608 TAAAAATTGTTT-ATGATTATTTAAGGTGTCTTCTAATAGAAAAAGCCTTTAATA-TTATATTAC
66 TAAAAATTGTTTGA-GATTATTAAAGGTGTCTTCTAATAGAAAACGCCTTTAATATTTA-ACTAC
* * * * * * * *
10812671 TAAAATTATAATATGGTTATTAAATGCGTTTATTCTAAAAAATGCCTTCACTAATTCGTTTTAAT
129 TAAAATTTTAAAATGGTTATTGAAGGCATTTATTCTAAAAAATACCTTCACTAATTTGTTCTAAT
* * *
10812736 TTTTGAAGAAATTTATTAAAGGCATTTTTTGAATTATACTCCTTCAATAATTTTTTTTACAGAAT
194 TTTTAAAGAAATTTATTGAAGGTATTTTTTGAATTATACTCCTTCAATAA-TTTTTTTACAGAAT
10812801 TATTGAAGGAGTTTTTTTAGAACAAATG-CTTTCAATAATTTTCTTTTAAAAAATATTT-GAGAT
258 TATTGAAGGAGTTTTTTTAGAACAAATGCCTTT-AATAA-TTTC-TTTAAAAAATATTTAG-GAT
* * * *
10812864 TATTAAAGGCGTTTTCTAGTGAAAAACGACTTAAATATTGCATTACCAAAATTTTAAGACAATTA
319 TATTAAAGGCATCTTCTAATGAAAAACGACTTAAATATTGCACTACCAAAATTTTAAGACAATTA
* * * *
10812929 GTTAAGGCGTTTATTCCAGAAAAATACTTTCACTAATTTGTTCTAATTTGAAAGAATTTATTGAA
384 GTCAAGGAGTTTATTCCAGAAAAATACCTTCACTAATTCGTTCTAATTTGAAAGAATTTATTGAA
* *
10812994 GGTATGTTTTGCATTAAATGCCTTC
449 GGTATGTTTTGCATTAAACGACTTC
* * *
10813019 AATAATTTTTGTAGATAATTATTGAAGGCGTTTCTTAAG-AAAAACGCCTTCAATAATTTTTTTT
1 AATAATTTTTGTAGATAATTATTGAAGGCGTTTCTTGAGAAAAAATGCCTTCAATAATTTTCTTT
* ** * * * *
10813083 TAAAAATTATTTGAGATTATTAAAGGCATCTTTTAACAGAAAACTCCTTTAATATTTAACTATTA
66 TAAAAATTGTTTGAGATTATTAAAGGTGTCTTCTAATAGAAAACGCCTTTAATATTTAACTACTA
* *
10813148 AAATTTTAAAATGGTTATTGAAGGCATTTATTCTAGATAAATACATTCACTAATTTGTTCTAATT
131 AAATTTTAAAATGGTTATTGAAGGCATTTATTCTA-AAAAATACCTTCACTAATTTGTTCTAATT
* * * * *
10813213 TTTTAAGAAATTTATGGAAGGTGTTTTTTGTATTATACGCCTTCAATA
195 TTTAAAGAAATTTATTGAAGGTATTTTTTGAATTATACTCCTTCAATA
10813261 TTCCACTATT
Statistics
Matches: 620, Mismatches: 86, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
472 6 0.01
473 70 0.11
474 179 0.29
475 110 0.18
476 255 0.41
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (473 bp):
AATAATTTTTGTAGATAATTATTGAAGGCGTTTCTTGAGAAAAAATGCCTTCAATAATTTTCTTT
TAAAAATTGTTTGAGATTATTAAAGGTGTCTTCTAATAGAAAACGCCTTTAATATTTAACTACTA
AAATTTTAAAATGGTTATTGAAGGCATTTATTCTAAAAAATACCTTCACTAATTTGTTCTAATTT
TTAAAGAAATTTATTGAAGGTATTTTTTGAATTATACTCCTTCAATAATTTTTTTACAGAATTAT
TGAAGGAGTTTTTTTAGAACAAATGCCTTTAATAATTTCTTTAAAAAATATTTAGGATTATTAAA
GGCATCTTCTAATGAAAAACGACTTAAATATTGCACTACCAAAATTTTAAGACAATTAGTCAAGG
AGTTTATTCCAGAAAAATACCTTCACTAATTCGTTCTAATTTGAAAGAATTTATTGAAGGTATGT
TTTGCATTAAACGACTTC
Found at i:10813288 original size:124 final size:124
Alignment explanation
Indices: 10813141--10813384 Score: 344
Period size: 124 Copynumber: 2.0 Consensus size: 124
10813131 TTAATATTTA
* * * **
10813141 ACTATTAAAATTTTAAAATGGTTATTGAAGGCATTTATTCTAGATAAATACATTCACTAATTTGT
1 ACTATTAAAATTTTAAAATGGTTATTGAAGGCATTTATTCCAAAAAAATACATAAACTAATTTGT
* ** * * *
10813206 TCTAATTTTTTAAGAAATTTATGGAAGGTGTTTTTTGTATTATACGCCTTCAATATTCC
66 TCTAATTTTTGAAGAAATTTATGGAAGGCATCTTTTGCATTATACACCTTCAATATTCC
* *
10813265 ACTATTAAAATTTTAAGATGGTTATTGAAGGCGTTTATTCCAAAAAAATACATAAACTAATTTGT
1 ACTATTAAAATTTTAAAATGGTTATTGAAGGCATTTATTCCAAAAAAATACATAAACTAATTTGT
* * *
10813330 TCTAATTTTTGAAGGAATTTATTGAATGCATCTTTTGCATTATACACCTTCAATA
66 TCTAATTTTTGAAGAAATTTATGGAAGGCATCTTTTGCATTATACACCTTCAATA
10813385 ATTTTTACAC
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
124 104 1.00
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (124 bp):
ACTATTAAAATTTTAAAATGGTTATTGAAGGCATTTATTCCAAAAAAATACATAAACTAATTTGT
TCTAATTTTTGAAGAAATTTATGGAAGGCATCTTTTGCATTATACACCTTCAATATTCC
Found at i:10813574 original size:363 final size:360
Alignment explanation
Indices: 10812932--10813623 Score: 929
Period size: 363 Copynumber: 1.9 Consensus size: 360
10812922 ACAATTAGTT
* * ** *
10812932 AAGGCGTTTATTCCAGAAAAATACTTTCACTAATTTGTTCTAATTTGAAAGAATTTATTGAAGGT
1 AAGGCGTTTATTCCAAAAAAATACATAAACTAATTTGTTCTAATTTGAAAGAATTTATTGAAGGC
* ** ** * * *
10812997 ATGTTTTGCATTAAATGCCTTCAATAATTTTTGTAGATAATTATTGAAGGCGTTTCTTAAGAAAA
66 ATCTTTTGCATTAAACACCTTCAATAATTTTTACACAGAATTATTGAAGGCATTTCTTAAGAAAA
* * * * *
10813062 ACGCCTTCAATAATTTTTTTTTAAAAATTATTTGAGATTATTAAAGGCATCTTTTAACAGAAAAC
131 ACGCCTTCAATAATTTTTTTTAAAAAATTATTTAAAATTATTAAAGGCATATTCTAACAGAAAAC
* *
10813127 TCCTTTAATATTTAACTATTAAAATTTTAAAATGGTTATTGAAGGCATTTATTCTAGATAAATAC
196 TCCTTTAATATTTAACTATTAAAATTTTAAAATGGTTATTGAAGGCATTTATTCCAGAAAAATAC
** * * * * *
10813192 ATTCACTAATTTGTTCTAATTTTTTAAGAAATTTATGGAAGGTGTTTTTTGTATTATACGCCTTC
261 ATTCACTAATTCATTCTAATTTTTGAAGAAATTTATGGAAGATATTTTTTGCATTATACACCTTC
10813257 AATATTCCACTATTAAAATTTTAAGATGGTTATTG
326 AATATTCCACTATTAAAATTTTAAGATGGTTATTG
* *
10813292 AAGGCGTTTATTCCAAAAAAATACATAAACTAATTTGTTCTAATTTTTGAAGGAATTTATTGAAT
1 AAGGCGTTTATTCCAAAAAAATACATAAACTAATTTGTTCTAA--TTTGAAAGAATTTATTGAAG
* *
10813357 GCATCTTTTGCATTATACACCTTCAATAATTTTTACACAGAATTATTGAAGGCATTTTTTGAAGA
64 GCATCTTTTGCATTAAACACCTTCAATAATTTTTACACAGAATTATTGAAGGCATTTCTT-AAGA
* * **
10813422 CAAACGCCTTCAATAATTTTTTTTAAAAAATTATTTAAAATTATTAAAGGCGTATTCT-AGTGAA
128 AAAACGCCTTCAATAATTTTTTTTAAAAAATTATTTAAAATTATTAAAGGCATATTCTAACAG-A
* * * * * *
10813486 AAACGT-TTTTAATATTTCACTTTTAAAGTTTTAATATGGTTATTGAAGGCGTTTATTCCAGAAA
192 AAAC-TCCTTTAATATTTAACTATTAAAATTTTAAAATGGTTATTGAAGGCATTTATTCCAGAAA
* * *
10813550 AATATATTCACTAATTCATTCTAATTTTTGAAGGAATTTATTGAAGATATTTTTTGCATTATACA
256 AATACATTCACTAATTCATTCTAATTTTTGAAGAAATTTATGGAAGATATTTTTTGCATTATACA
10813615 CCTTCAATA
321 CCTTCAATA
10813624 ATTTTTGTGC
Statistics
Matches: 283, Mismatches: 44, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
360 39 0.14
362 69 0.24
363 174 0.61
364 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (360 bp):
AAGGCGTTTATTCCAAAAAAATACATAAACTAATTTGTTCTAATTTGAAAGAATTTATTGAAGGC
ATCTTTTGCATTAAACACCTTCAATAATTTTTACACAGAATTATTGAAGGCATTTCTTAAGAAAA
ACGCCTTCAATAATTTTTTTTAAAAAATTATTTAAAATTATTAAAGGCATATTCTAACAGAAAAC
TCCTTTAATATTTAACTATTAAAATTTTAAAATGGTTATTGAAGGCATTTATTCCAGAAAAATAC
ATTCACTAATTCATTCTAATTTTTGAAGAAATTTATGGAAGATATTTTTTGCATTATACACCTTC
AATATTCCACTATTAAAATTTTAAGATGGTTATTG
Found at i:10813816 original size:239 final size:238
Alignment explanation
Indices: 10813252--10813866 Score: 669
Period size: 239 Copynumber: 2.6 Consensus size: 238
10813242 GTATTATACG
* * * * * * *
10813252 CCTTCAATATTCCACTATTAAAATTTTAAGATGGTTATTGAAGGCGTTTATTCCAAAAAAATACA
1 CCTTCAATATTTCACTACTAAAGTTTTAAGACGATTAGTGAAAGCGTTTATTCCAAAAAAATACA
** *
10813317 TAAACTAATTTGTTCTAATTTTTGAAGGAATTTATTGAATGCATCTTTTGCATTATACACCTTCA
66 TTCACTAATTTGTTCTAATTTTTGAAGGAATTTATTGAA-GCATTTTTTGCATTATACACCTTCA
* *
10813382 ATAATTTTTACACAGAATTATTGAAGGCATTTTTTGAAGACAAACGCCTTCAATAATTTTTTTTA
130 ATAATTTTTACACAAAATTATTGAAGACATTTTTTGAAGACAAACGCCTTCAATAATTTTTTTTA
* *
10813447 AAAAATTATTTAAAATTATTAAAGGCGTATTCTAGTGAAAAACG
195 AAAAATTATTTAAAATTATTAAAGGCGTATTCTAATGAAAAACA
** * ** * * * * * * *
10813491 TTTTTAATATTTCACTTTTAAAGTTTTAATATGGTTATTGAAGGCGTTTATTCCAGAAAAATATA
1 CCTTCAATATTTCACTACTAAAGTTTTAAGACGATTAGTGAAAGCGTTTATTCCAAAAAAATACA
** *
10813556 TTCACTAATTCATTCTAATTTTTGAAGGAATTTATTGAAGATATTTTTTGCATTATACACCTTCA
66 TTCACTAATTTGTTCTAATTTTTGAAGGAATTTATTGAAG-CATTTTTTGCATTATACACCTTCA
*** * *
10813621 ATAATTTTTGTGCAAAATTATTGAAGACATTTTTTTATA-ACAAACGCCTTTAATAATTTTTTTT
130 ATAATTTTTACACAAAATTATTGAAGACATTTTTTGA-AGACAAACGCCTTCAATAATTTTTTTT
* * * * *
10813685 -AAAAATTGTTTGAGATTATTAAAGGTGTCTTCTAATGAAAAACA
194 AAAAAATTATTTAAAATTATTAAAGGCGTATTCTAATGAAAAACA
* * * * *
10813729 CCTTCAATATTTCACTACTAATA-TTTTAAGGCGATTAGTGAAAGCATTTTTTTTCAAAAAAATG
1 CCTTCAATATTTCACTACTAA-AGTTTTAAGACGATTAGTGAAAGC-GTTTATTCCAAAAAAATA
* * * * * ** * *
10813793 CCTTCATTAATTTGCTATAATTTTTTAAAAAAATTTATTGAAGGCATTTTTTGCATAATACGCCT
64 CATTCACTAATTTGTTCTAA-TTTTTGAAGGAATTTATTGAA-GCATTTTTTGCATTATACACCT
10813858 TCAATAATT
127 TCAATAATT
10813867 CCTTTCATTC
Statistics
Matches: 312, Mismatches: 58, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
238 70 0.22
239 195 0.62
240 46 0.15
241 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.42
Consensus pattern (238 bp):
CCTTCAATATTTCACTACTAAAGTTTTAAGACGATTAGTGAAAGCGTTTATTCCAAAAAAATACA
TTCACTAATTTGTTCTAATTTTTGAAGGAATTTATTGAAGCATTTTTTGCATTATACACCTTCAA
TAATTTTTACACAAAATTATTGAAGACATTTTTTGAAGACAAACGCCTTCAATAATTTTTTTTAA
AAAATTATTTAAAATTATTAAAGGCGTATTCTAATGAAAAACA
Found at i:10814505 original size:28 final size:28
Alignment explanation
Indices: 10814472--10814525 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
10814462 AATATTGTGG
*
10814472 TTTGCTAAATGGTATTGTGTGATATTAT
1 TTTGCTAAATGGTATTGTATGATATTAT
*
10814500 TTTGCTGAATGGTATTGTATGATATT
1 TTTGCTAAATGGTATTGTATGATATT
10814526 GGTATGCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.24, C:0.04, G:0.22, T:0.50
Consensus pattern (28 bp):
TTTGCTAAATGGTATTGTATGATATTAT
Found at i:10814533 original size:28 final size:28
Alignment explanation
Indices: 10814469--10814535 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
10814459 TTAAATATTG
*
10814469 TGGTTTGCTAAATGGTATTGTGTGATAT
1 TGGTTTGCTAAATGGTATTGTATGATAT
** *
10814497 TATTTTGCTGAATGGTATTGTATGATAT
1 TGGTTTGCTAAATGGTATTGTATGATAT
*
10814525 TGGTATGCTAA
1 TGGTTTGCTAA
10814536 TTCATATGCT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.24, C:0.04, G:0.25, T:0.46
Consensus pattern (28 bp):
TGGTTTGCTAAATGGTATTGTATGATAT
Found at i:10814557 original size:12 final size:12
Alignment explanation
Indices: 10814542--10814616 Score: 89
Period size: 12 Copynumber: 6.1 Consensus size: 12
10814532 CTAATTCATA
10814542 TGCTGAATGGTT
1 TGCTGAATGGTT
10814554 TGCTGAATAGTGTT
1 TGCTGAAT-G-GTT
*
10814568 T-CTAAATGGTT
1 TGCTGAATGGTT
10814579 TGCTGAATGGTT
1 TGCTGAATGGTT
*
10814591 TACTGAATGGTAT
1 TGCTGAATGGT-T
*
10814604 TTCTGAATGGTT
1 TGCTGAATGGTT
10814616 T
1 T
10814617 ACAGAAAAGT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
11 4 0.07
12 30 0.55
13 17 0.31
14 4 0.07
ACGTcount: A:0.21, C:0.08, G:0.27, T:0.44
Consensus pattern (12 bp):
TGCTGAATGGTT
Found at i:10814576 original size:25 final size:24
Alignment explanation
Indices: 10814547--10814618 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 24
10814537 TCATATGCTG
10814547 AATGGTTTGCTGAATAGTGTTT-CTA
1 AATGGTTTGCTGAAT-G-GTTTACTA
*
10814572 AATGGTTTGCTGAATGGTTTACTG
1 AATGGTTTGCTGAATGGTTTACTA
*
10814596 AATGGTATTTCTGAATGGTTTAC
1 AATGGT-TTGCTGAATGGTTTAC
10814619 AGAAAAGTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.09
24 9 0.21
25 30 0.70
ACGTcount: A:0.24, C:0.08, G:0.25, T:0.43
Consensus pattern (24 bp):
AATGGTTTGCTGAATGGTTTACTA
Found at i:10814589 original size:37 final size:37
Alignment explanation
Indices: 10814542--10814616 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
10814532 CTAATTCATA
* *
10814542 TGCTGAATGGTTTGCTGAATAGTGTTTCTAAATGGTT
1 TGCTGAATGGTTTACTGAATAGTATTTCTAAATGGTT
* *
10814579 TGCTGAATGGTTTACTGAATGGTATTTCTGAATGGTT
1 TGCTGAATGGTTTACTGAATAGTATTTCTAAATGGTT
10814616 T
1 T
10814617 ACAGAAAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.21, C:0.08, G:0.27, T:0.44
Consensus pattern (37 bp):
TGCTGAATGGTTTACTGAATAGTATTTCTAAATGGTT
Found at i:10814631 original size:25 final size:25
Alignment explanation
Indices: 10814576--10814632 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
10814566 TTTCTAAATG
* **
10814576 GTTTGCTGAATGGTTTACTGAATGGT
1 GTTT-CTGAATGGTTTACAGAAAAGT
*
10814602 ATTTCTGAATGGTTTACAGAAAAGT
1 GTTTCTGAATGGTTTACAGAAAAGT
10814627 GTTTCT
1 GTTTCT
10814633 ATTGACATTG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 23 0.88
26 3 0.12
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.42
Consensus pattern (25 bp):
GTTTCTGAATGGTTTACAGAAAAGT
Found at i:10818460 original size:126 final size:126
Alignment explanation
Indices: 10818194--10818462 Score: 287
Period size: 126 Copynumber: 2.1 Consensus size: 126
10818184 TAACAAAATG
* * * * * *
10818194 TTATTGAAGGCATTTTTGACCAAAATTGCCTTTAATAATCCCACCTAAAATTTTATTGTGTGAAA
1 TTATTGAAGGCATTTTTGACAAAAACTGCATTCAAGAATCCCACCTAAAAATTTATTGTGTGAAA
** * *
10818259 TATTAAAGGCGTTTTGGACAAAAAAAGTCTTCAAGAATCTGTTCCAACTTTTTTGTATGGA
66 TATTAAAGGCGTTTCAGACAAAAAAAGTCTTCAAGAATCTATTCCAACTTTTTTGTATAGA
* *
10818320 TTATTGAAGACATTTTTGACAAAAACTGCATTCAAGAATCCCACTTAAAAATTTATTGAT-TGAA
1 TTATTGAAGGCATTTTTGACAAAAACTGCATTCAAGAATCCCACCTAAAAATTTATTG-TGTGAA
* * * * * * *
10818384 TTATTGAATGCGCTTTCAG-CCAAAAATGTTTTCAAGAATCTATTTCATA-TATTTTT-TATAGA
65 ATATTAAAGGCG-TTTCAGACAAAAAAAGTCTTCAAGAATCTATTCCA-ACT-TTTTTGTATAGA
10818446 TTATT-AAGGGCATTTTT
1 TTATTGAA-GGCATTTTT
10818463 AGCAAGAAAA
Statistics
Matches: 118, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
125 2 0.02
126 105 0.89
127 11 0.09
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (126 bp):
TTATTGAAGGCATTTTTGACAAAAACTGCATTCAAGAATCCCACCTAAAAATTTATTGTGTGAAA
TATTAAAGGCGTTTCAGACAAAAAAAGTCTTCAAGAATCTATTCCAACTTTTTTGTATAGA
Found at i:10818554 original size:115 final size:115
Alignment explanation
Indices: 10818414--10818637 Score: 412
Period size: 115 Copynumber: 1.9 Consensus size: 115
10818404 CAAAAATGTT
* *
10818414 TTCAAGAATCTATTTCATATATTTTTTATAGATTATTAAGGGCATTTTTAGCAAGAAAATGCCTT
1 TTCAAGAATCTATTCCATATATTTTTTATAGATTATTAAAGGCATTTTTAGCAAGAAAATGCCTT
10818479 GGATAATCCCTAACAAAATGTTATTGAAGGTATTTTTTTCCAAAACTGCC
66 GGATAATCCCTAACAAAATGTTATTGAAGGTATTTTTTTCCAAAACTGCC
* *
10818529 TTCAAGAATCTGTTCCATATTTTTTTTATAGATTATTAAAGGCATTTTTAGCAAGAAAATGCCTT
1 TTCAAGAATCTATTCCATATATTTTTTATAGATTATTAAAGGCATTTTTAGCAAGAAAATGCCTT
10818594 GGATAATCCCTAACAAAATGTTATTGAAGGTATTTTTTTCCAAA
66 GGATAATCCCTAACAAAATGTTATTGAAGGTATTTTTTTCCAAA
10818638 TCACCTTCAA
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
115 105 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (115 bp):
TTCAAGAATCTATTCCATATATTTTTTATAGATTATTAAAGGCATTTTTAGCAAGAAAATGCCTT
GGATAATCCCTAACAAAATGTTATTGAAGGTATTTTTTTCCAAAACTGCC
Found at i:10818717 original size:115 final size:115
Alignment explanation
Indices: 10818440--10818708 Score: 332
Period size: 115 Copynumber: 2.3 Consensus size: 115
10818430 ATATATTTTT
* *
10818440 TATAGATTATTAAGGGCATTTTTAGCAAGAAAATGCCTTGGATAATCCCTAACAAAATGTTATTG
1 TATAGAATATTAAAGGCATTTTTAGCAAGAAAATGCCTTGGATAATCCCTAACAAAATGTTATTG
* ** * ** *
10818505 AAGGTATTTTTTTCCAAAACTGCCTTCAAGAATCTGTTCCATATTTTTTT
66 AAGGTATTTTTTTCCAAAACTACCTTCAAGAATCTGCACCAAATTTAGTG
*
10818555 TATAGATTATTAAAGGCATTTTTAGCAAGAAAATGCCTTGGATAATCCCTAACAAAATGTTATTG
1 TATAGAATATTAAAGGCATTTTTAGCAAGAAAATGCCTTGGATAATCCCTAACAAAATGTTATTG
* *
10818620 AAGGTATTTTTTTCCAAATC-ACCTTCAATAATCT-CACCTAAAAATTTAGTG
66 AAGGTATTTTTTTCCAAAACTACCTTCAAGAATCTGCACC---AAATTTAGTG
* *
10818671 TGT-GAAATATTAAAGGCA-TTTTAGGCAA-AAAGTGCCTT
1 TATAG-AATATTAAAGGCATTTTTA-GCAAGAAAATGCCTT
10818709 CAAGAATCCG
Statistics
Matches: 136, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
113 2 0.01
114 12 0.09
115 98 0.72
116 24 0.18
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.36
Consensus pattern (115 bp):
TATAGAATATTAAAGGCATTTTTAGCAAGAAAATGCCTTGGATAATCCCTAACAAAATGTTATTG
AAGGTATTTTTTTCCAAAACTACCTTCAAGAATCTGCACCAAATTTAGTG
Found at i:10824967 original size:29 final size:29
Alignment explanation
Indices: 10824909--10824974 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
10824899 ATTTACTCAA
* * *
10824909 AATTCAATAATTAAATTTAAAATTTTAAT
1 AATTTAATAATTAAATTTAAAATATGAAT
*
10824938 AATTTAATAATT-ATTTTAAAAGTATGAAT
1 AATTTAATAATTAAATTTAAAA-TATGAAT
10824967 ATATTTAA
1 A-ATTTAA
10824975 ATGATTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 8 0.26
29 17 0.55
30 6 0.19
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (29 bp):
AATTTAATAATTAAATTTAAAATATGAAT
Found at i:10825185 original size:12 final size:12
Alignment explanation
Indices: 10825168--10825194 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
10825158 GTGATATTAT
10825168 TATGTCATATGA
1 TATGTCATATGA
10825180 TATGTCATATGA
1 TATGTCATATGA
10825192 TAT
1 TAT
10825195 TGTTAATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.44
Consensus pattern (12 bp):
TATGTCATATGA
Done.