Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 58 of 125
Found at i:11484393 original size:19 final size:19
Alignment explanation
Indices: 11484342--11484394 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 19
11484332 AAATTTAGGA
* *
11484342 TTTGACCTAGGGTTTGGGG
1 TTTGACATAGGGTTTGGAG
* * *
11484361 TTTTACATAAGGTTTTGAG
1 TTTGACATAGGGTTTGGAG
*
11484380 TTTGACTTAGGGTTT
1 TTTGACATAGGGTTT
11484395 AAGGCTTTAT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.17, C:0.08, G:0.30, T:0.45
Consensus pattern (19 bp):
TTTGACATAGGGTTTGGAG
Found at i:11484458 original size:19 final size:19
Alignment explanation
Indices: 11484430--11484508 Score: 68
Period size: 19 Copynumber: 4.1 Consensus size: 19
11484420 TGATCTGGAG
11484430 TTAAGGGTTTGACTTAGGGT
1 TTAA-GGTTTGACTTAGGGT
* * *
11484450 TTAAAGTTTGACCTAGTGT
1 TTAAGGTTTGACTTAGGGT
* * * *
11484469 TTGAGGTTTGAGTTAAGAT
1 TTAAGGTTTGACTTAGGGT
* *
11484488 TTAGGGTTTGATTTAGGGT
1 TTAAGGTTTGACTTAGGGT
11484507 TT
1 TT
11484509 GGGATTTTAC
Statistics
Matches: 44, Mismatches: 15, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
19 40 0.91
20 4 0.09
ACGTcount: A:0.22, C:0.04, G:0.30, T:0.44
Consensus pattern (19 bp):
TTAAGGTTTGACTTAGGGT
Found at i:11484502 original size:12 final size:12
Alignment explanation
Indices: 11484485--11484509 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11484475 TTTGAGTTAA
11484485 GATTTAGGGTTT
1 GATTTAGGGTTT
11484497 GATTTAGGGTTT
1 GATTTAGGGTTT
11484509 G
1 G
11484510 GGATTTTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.48
Consensus pattern (12 bp):
GATTTAGGGTTT
Found at i:11485808 original size:4 final size:4
Alignment explanation
Indices: 11485799--11485865 Score: 54
Period size: 4 Copynumber: 17.8 Consensus size: 4
11485789 TTTTTATTTT
* * *
11485799 TTTC TTTC -TT- TTTC TTTC TTT- TTTA ATT- TTTC TTTC TTTC TTTG
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
*
11485843 TTT- TTTC TTTT TCTTC TTTC TTT
1 TTTC TTTC TTTC T-TTC TTTC TTT
11485866 ATCTGGTTCA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
3 12 0.23
4 37 0.71
5 3 0.06
ACGTcount: A:0.03, C:0.16, G:0.01, T:0.79
Consensus pattern (4 bp):
TTTC
Found at i:11485829 original size:28 final size:28
Alignment explanation
Indices: 11485788--11485861 Score: 84
Period size: 26 Copynumber: 2.8 Consensus size: 28
11485778 TATTATTATA
*
11485788 TTTTTTATTTTTTTCTTTCTTTTTCTTTC
1 TTTTTTA-ATTTTTCTTTCTTTTTCTTTC
*
11485817 TTTTTTAATTTTTCTTTC--TTTCTTTG
1 TTTTTTAATTTTTCTTTCTTTTTCTTTC
*
11485843 TTTTTT-CTTTTTC-TTCTTT
1 TTTTTTAATTTTTCTTTCTTT
11485862 CTTTATCTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 3 0.08
25 6 0.15
26 14 0.35
28 10 0.25
29 7 0.17
ACGTcount: A:0.04, C:0.14, G:0.01, T:0.81
Consensus pattern (28 bp):
TTTTTTAATTTTTCTTTCTTTTTCTTTC
Found at i:11485830 original size:24 final size:24
Alignment explanation
Indices: 11485795--11485865 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
11485785 ATATTTTTTA
*
11485795 TTTTTT-TCTTTCTT-TTTCTTTC
1 TTTTTTATTTTTCTTCTTTCTTTC
*
11485817 TTTTTTAATTTTTCTTTCTTTCTTTG
1 TTTTTT-ATTTTTC-TTCTTTCTTTC
*
11485843 TTTTTTCTTTTTCTTCTTTCTTT
1 TTTTTTATTTTTCTTCTTTCTTT
11485866 ATCTGGTTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 6 0.14
24 15 0.36
25 8 0.19
26 13 0.31
ACGTcount: A:0.03, C:0.15, G:0.01, T:0.80
Consensus pattern (24 bp):
TTTTTTATTTTTCTTCTTTCTTTC
Found at i:11485862 original size:28 final size:26
Alignment explanation
Indices: 11485788--11485865 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 26
11485778 TATTATTATA
11485788 TTTTTTATTTTTTTCTTTCTTTTTCTTTC
1 TTTTTT-TTTTTTTCTTTC--TTTCTTTC
** *
11485817 TTTTTTAATTTTTCTTTCTTTCTTTG
1 TTTTTTTTTTTTTCTTTCTTTCTTTC
11485843 TTTTTTCTTTTTCTTCTTTCTTT
1 TTTTTT-TTTTT-TTCTTTCTTT
11485866 ATCTGGTTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
26 13 0.31
27 3 0.07
28 20 0.48
29 6 0.14
ACGTcount: A:0.04, C:0.14, G:0.01, T:0.81
Consensus pattern (26 bp):
TTTTTTTTTTTTTCTTTCTTTCTTTC
Found at i:11485863 original size:32 final size:31
Alignment explanation
Indices: 11485788--11485865 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 31
11485778 TATTATTATA
11485788 TTTTTTAT-TTT-TTTCTTTCTTTTTCTTTC
1 TTTTTTATCTTTCTTTCTTTCTTTTTCTTTC
* *
11485817 TTTTTTAATTTTTCTTTCTTTCTTTGTTTTTTC
1 TTTTTT-ATCTTTCTTTCTTTCTTT-TTCTTTC
11485850 TTTTTCT-TCTTTCTTT
1 TTTTT-TATCTTTCTTT
11485866 ATCTGGTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
29 6 0.14
30 2 0.05
31 3 0.07
32 19 0.45
33 11 0.26
34 1 0.02
ACGTcount: A:0.04, C:0.14, G:0.01, T:0.81
Consensus pattern (31 bp):
TTTTTTATCTTTCTTTCTTTCTTTTTCTTTC
Found at i:11498465 original size:14 final size:14
Alignment explanation
Indices: 11498448--11498481 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
11498438 ATATTTTGCT
11498448 TAAAAAAATAAAAA
1 TAAAAAAATAAAAA
11498462 TAAAAAAATAAAAA
1 TAAAAAAATAAAAA
*
11498476 CAAAAA
1 TAAAAA
11498482 GTGAAAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (14 bp):
TAAAAAAATAAAAA
Found at i:11506707 original size:66 final size:66
Alignment explanation
Indices: 11506598--11506730 Score: 171
Period size: 66 Copynumber: 2.0 Consensus size: 66
11506588 AAATTAAAAT
* *
11506598 ATTTTGATTTTAGATTTAATTCAATTTAAGAGGAAGAAGTGAAGAAGCACA-G-AGGCAGGGTTG
1 ATTTTGATTTAAGATTTAATTCAATTTAAGAGGAAAAAGTGAAGAA-C-CATGAAGGCAGGGTTG
11506661 GCG
64 GCG
* * * * *
11506664 ATTTTGGTTTAAGATTTAATTTAATTTAATAGGAAAAATTGAAGAACCATGAAGGTAGGGTTGGC
1 ATTTTGATTTAAGATTTAATTCAATTTAAGAGGAAAAAGTGAAGAACCATGAAGGCAGGGTTGGC
11506729 G
66 G
11506730 A
1 A
11506731 GTGAAAGTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
64 2 0.03
65 2 0.03
66 54 0.93
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (66 bp):
ATTTTGATTTAAGATTTAATTCAATTTAAGAGGAAAAAGTGAAGAACCATGAAGGCAGGGTTGGC
G
Found at i:11508399 original size:25 final size:24
Alignment explanation
Indices: 11508361--11508416 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
11508351 AGCATATACA
*
11508361 AATAAATAACTAATTTAATATGTT-
1 AATAAATAAATAATTTAA-ATGTTG
11508385 AATTAAATAAATAATTTAAATGTTG
1 AA-TAAATAAATAATTTAAATGTTG
11508410 AATAAAT
1 AATAAAT
11508417 TATGTTTCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 12 0.41
25 17 0.59
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (24 bp):
AATAAATAAATAATTTAAATGTTG
Found at i:11508624 original size:16 final size:14
Alignment explanation
Indices: 11508603--11508680 Score: 65
Period size: 16 Copynumber: 5.5 Consensus size: 14
11508593 AGTTGTTTGT
11508603 TTATTTAAAATATAAA
1 TTATTT-AAA-ATAAA
*
11508619 TTATTT--AATAAT
1 TTATTTAAAATAAA
*
11508631 TTATTTAATATGTAAA
1 TTATTTAA-A-ATAAA
11508647 TTATTT-AAATAAA
1 TTATTTAAAATAAA
11508660 TTATTTAAACAT-AA
1 TTATTTAAA-ATAAA
11508674 TTATTTA
1 TTATTTA
11508681 TCATGTGTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
12 10 0.19
13 11 0.21
14 12 0.23
15 4 0.08
16 15 0.29
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (14 bp):
TTATTTAAAATAAA
Found at i:11508632 original size:24 final size:24
Alignment explanation
Indices: 11508562--11508653 Score: 85
Period size: 24 Copynumber: 3.6 Consensus size: 24
11508552 TTATTCATTT
11508562 AATATAAATATATTTATTTATTTAA
1 AATATAAAT-TATTTATTTATTTAA
* * * *
11508587 CATATAAGTTGTTTGTTTATTTAA
1 AATATAAATTATTTATTTATTTAA
11508611 AATATAAATTATTTAATAATTTATTTAA
1 AATATAAATTA-TT--T-ATTTATTTAA
* *
11508639 TATGTAAATTATTTA
1 AATATAAATTATTTA
11508654 AATAAATTAT
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
24 22 0.42
25 10 0.19
27 3 0.06
28 18 0.34
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (24 bp):
AATATAAATTATTTATTTATTTAA
Found at i:11508633 original size:28 final size:28
Alignment explanation
Indices: 11508602--11508680 Score: 99
Period size: 28 Copynumber: 2.9 Consensus size: 28
11508592 AAGTTGTTTG
11508602 TTTATTTAAAATATAAATTATTTAATAA
1 TTTATTTAAAATATAAATTATTTAATAA
* *
11508630 TTTATTTAATATGTAAATTATTTAAATAA
1 TTTATTTAAAATATAAATTATTT-AATAA
* *
11508659 ATTATTT-AAACAT-AATTATTTA
1 TTTATTTAAAATATAAATTATTTA
11508681 TCATGTGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
26 1 0.02
27 8 0.18
28 24 0.55
29 11 0.25
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (28 bp):
TTTATTTAAAATATAAATTATTTAATAA
Found at i:11508634 original size:12 final size:12
Alignment explanation
Indices: 11508614--11508667 Score: 54
Period size: 12 Copynumber: 4.1 Consensus size: 12
11508604 TATTTAAAAT
11508614 ATAAATTATTTA
1 ATAAATTATTTA
*
11508626 ATAATTTATTTAA
1 ATAAATTATTT-A
11508639 TATGTAAATTATTTAA
1 -A--TAAATTATTT-A
11508655 ATAAATTATTTA
1 ATAAATTATTTA
11508667 A
1 A
11508668 ACATAATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
12 12 0.33
13 11 0.31
14 1 0.03
15 1 0.03
16 11 0.31
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (12 bp):
ATAAATTATTTA
Found at i:11508677 original size:14 final size:13
Alignment explanation
Indices: 11508644--11508680 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
11508634 TTTAATATGT
*
11508644 AAATTATTTAAAT
1 AAATTATTTAAAC
11508657 AAATTATTTAAAC
1 AAATTATTTAAAC
11508670 ATAATTATTTA
1 A-AATTATTTA
11508681 TCATGTGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTTAAAC
Found at i:11509115 original size:29 final size:29
Alignment explanation
Indices: 11509082--11509166 Score: 75
Period size: 29 Copynumber: 2.9 Consensus size: 29
11509072 ATTTTTACAT
11509082 TAAAATATTAAATAATAATATTA-TAAAAG
1 TAAAATATTAAATAA-AATATTACTAAAAG
* * * *
11509111 TAAAATTTTATATAAAATTTTACTAAAAT
1 TAAAATATTAAATAAAATATTACTAAAAG
* * *
11509140 TATAATTTTATATATAAAT-TTACTAAA
1 TAAAATATTAAATA-AAATATTACTAAA
11509167 TTTTACAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
28 6 0.12
29 39 0.80
30 4 0.08
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (29 bp):
TAAAATATTAAATAAAATATTACTAAAAG
Found at i:11511120 original size:18 final size:20
Alignment explanation
Indices: 11511069--11511120 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
11511059 TTTTTTTTTA
11511069 AAATAATAAATAAAAATTGAT
1 AAATAATAAA-AAAAATTGAT
* *
11511090 TAATAAATTAAAAAAA-T-AT
1 AAAT-AATAAAAAAAATTGAT
11511109 AAATAATAAAAA
1 AAATAATAAAAA
11511121 TAGAAAGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 7 0.27
19 5 0.19
20 1 0.04
21 8 0.31
22 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (20 bp):
AAATAATAAAAAAAATTGAT
Found at i:11511279 original size:213 final size:213
Alignment explanation
Indices: 11510877--11511260 Score: 505
Period size: 213 Copynumber: 1.8 Consensus size: 213
11510867 ATAATATAAA
* * * *
11510877 AATAAATTTAATAATAATACTAAACTAATAAAAATTAAGAGAAAAGGAAATTTTTATCCGATGAT
1 AATAAATTTAATAAAAATACTAAACTAATAAAAATTAAAAGAAAAGGAAATTTTAATCCAATGAT
* * * * *
11510942 GAGATTCAAAGGTATTTCGAGTAGTGATGCCTACGAAATCCGTAGGTGAGAAGATTTTTTTTAAG
66 GAGATTCAAAAGTATTCCGAGTAGAGATGCCTAAGAAATCCGTAGGTGAGAAGATTTTTTTTAAA
* * *
11511007 TACTATCAGCGTATTGGAGTATTTATAAAAAATTTTCAATACAGTAAGGATTTTTTTTTTTAAAA
131 TACTATCAGCGTATTGAAATATTTATAAAAAATCTTCAATACAGTAA-GATTTTTTTTTTTAAAA
11511072 TAATAAATAAAAATTGATT
195 TAATAAATAAAAATTGATT
11511091 AATAAA-TTAA-AAAAATA-TAAA-TAATAAAAA-TAGAAAGAAAA-GAAA-TTTAATCCAATGA
1 AATAAATTTAATAAAAATACTAAACTAATAAAAATTA-AAAGAAAAGGAAATTTTAATCCAATGA
* *
11511149 TGGGATTCTAAAAGTATTCCGAGTAGAGATGCTTTAAGAAATCTC-TAGGTGAGAAGATTTTTTT
65 TGAGATTC-AAAAGTATTCCGAGTAGAGATGC-CTAAGAAATC-CGTAGGTGAGAAGA-TTTTTT
*
11511213 TGTAAAATATTATCAGCGTATTGAAATATTTATAAAAAATCTTCAATA
126 T-T-AAATACTATCAGCGTATTGAAATATTTATAAAAAATCTTCAATA
11511261 TGATTAAATT
Statistics
Matches: 148, Mismatches: 15, Indels: 15
0.83 0.08 0.08
Matches are distributed among these distances:
208 18 0.12
209 26 0.18
210 36 0.24
211 12 0.08
212 7 0.05
213 43 0.29
214 6 0.04
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (213 bp):
AATAAATTTAATAAAAATACTAAACTAATAAAAATTAAAAGAAAAGGAAATTTTAATCCAATGAT
GAGATTCAAAAGTATTCCGAGTAGAGATGCCTAAGAAATCCGTAGGTGAGAAGATTTTTTTTAAA
TACTATCAGCGTATTGAAATATTTATAAAAAATCTTCAATACAGTAAGATTTTTTTTTTTAAAAT
AATAAATAAAAATTGATT
Found at i:11511331 original size:12 final size:12
Alignment explanation
Indices: 11511300--11511331 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
11511290 TTTCAATTAA
*
11511300 AATAAAAGAATT
1 AATAAAATAATT
11511312 AATAAAATAATT
1 AATAAAATAATT
11511324 AATAAAAT
1 AATAAAAT
11511332 TTTTGAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (12 bp):
AATAAAATAATT
Found at i:11511865 original size:193 final size:193
Alignment explanation
Indices: 11511386--11511964 Score: 1063
Period size: 192 Copynumber: 3.0 Consensus size: 193
11511376 GCATGGCATG
11511386 CATGACATAATTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCTAAAAGTATTCCG
1 CATGACAT--TTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCTAAAAGTATTCCG
11511451 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGA
64 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGA
*
11511516 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAAT-AGTTTTTTTAA
129 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAATTTTTTTTAA
11511580 CATGACATTTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCTAAAAGTATTCCGAG
1 CATGACATTTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCTAAAAGTATTCCGAG
* *
11511645 TAGAGATGCTTTAAAAAATCTCTAGGTGATAAAGAGTTCTTTTAATGTTACCAACGTACTGGAAC
66 TAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGAAC
*
11511710 ATTTTAAGAATTATTTCAATAAAAAGGATTTAATTTATTTTTCTCGAGAATAATTTTTTTTAA
131 ATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAATTTTTTTTAA
*
11511773 CATGACATTTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCTAAAAATATTCCGAG
1 CATGACATTTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCTAAAAGTATTCCGAG
*
11511838 TAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGAAAC
66 TAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGAAC
*
11511903 ATTTTAA-AATTATTTCAATAAAAAGGTTTTGATTTATTTTTCTCGAGAATAATTTTTTTTAA
131 ATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAATTTTTTTTAA
11511965 TAAATAAAAA
Statistics
Matches: 374, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
192 223 0.60
193 143 0.38
194 8 0.02
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (193 bp):
CATGACATTTTCTTACGAAAAATAAATTCGAGCCTCCAAAGATGAGATTCTAAAAGTATTCCGAG
TAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGAAC
ATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAATTTTTTTTAA
Found at i:11513274 original size:21 final size:21
Alignment explanation
Indices: 11513256--11513301 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
11513246 TGACATTAGT
11513256 TATTATAAAGATAAAATTAAA
1 TATTATAAAGATAAAATTAAA
*
11513277 TATTATAACGATAAAATTAAA
1 TATTATAAAGATAAAATTAAA
11513298 -ATTA
1 TATTA
11513302 GTGTTGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (21 bp):
TATTATAAAGATAAAATTAAA
Found at i:11514240 original size:21 final size:22
Alignment explanation
Indices: 11514215--11514273 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
11514205 TTTTATACTT
*
11514215 AAATTTATTT-AAAT-ATATTAA
1 AAATTAATTTAAAATAATA-TAA
*
11514236 AAATTAAATTAAAATAATATAA
1 AAATTAATTTAAAATAATATAA
11514258 AAATTAATTTTAAAAT
1 AAATTAA-TTTAAAAT
11514274 CTAATAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 8 0.25
22 14 0.44
23 10 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAATTAATTTAAAATAATATAA
Found at i:11514735 original size:16 final size:15
Alignment explanation
Indices: 11514699--11514736 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
11514689 AAAAATATAA
11514699 ATATTTTAAAATTTT
1 ATATTTTAAAATTTT
*
11514714 AAATTTTAAAATATTT
1 ATATTTTAAAAT-TTT
11514730 ATATTTT
1 ATATTTT
11514737 TTATAATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATTTTAAAATTTT
Found at i:11516503 original size:22 final size:22
Alignment explanation
Indices: 11516477--11516537 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
11516467 TTTTTCAAGA
11516477 AATAATTTTATTAATTTAATAT
1 AATAATTTTATTAATTTAATAT
***
11516499 AATAAACAATATT-ATTTAATAT
1 AAT-AATTTTATTAATTTAATAT
* *
11516521 ATTATTTTTATTAATTT
1 AATAATTTTATTAATTT
11516538 TTAATCATTT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
21 5 0.17
22 18 0.62
23 6 0.21
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (22 bp):
AATAATTTTATTAATTTAATAT
Found at i:11516598 original size:20 final size:20
Alignment explanation
Indices: 11516573--11516617 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
11516563 TTTGATGTAA
* *
11516573 AAATAATTTAGTGATTTTTT
1 AAATAATTTAGTAATTTTAT
*
11516593 AAATAATTTATTAATTTTAT
1 AAATAATTTAGTAATTTTAT
11516613 AAATA
1 AAATA
11516618 TTAAATAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (20 bp):
AAATAATTTAGTAATTTTAT
Found at i:11521363 original size:24 final size:23
Alignment explanation
Indices: 11521318--11521363 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
11521308 ACTTCAAATC
*
11521318 TTAAATATATTATATATTACTTT
1 TTAAATATATTATATATCACTTT
11521341 TTAAA-ATATTATATGAATCACTT
1 TTAAATATATTATAT--ATCACTT
11521364 AAAATGTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 5 0.25
24 6 0.30
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (23 bp):
TTAAATATATTATATATCACTTT
Found at i:11528207 original size:21 final size:21
Alignment explanation
Indices: 11528181--11528221 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
11528171 AAGCAATCCC
11528181 ATTGCAACAACCACTTGCCAA
1 ATTGCAACAACCACTTGCCAA
*
11528202 ATTGCAATAACCACTTGCCA
1 ATTGCAACAACCACTTGCCA
11528222 GTTTGTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.32, G:0.10, T:0.22
Consensus pattern (21 bp):
ATTGCAACAACCACTTGCCAA
Found at i:11540559 original size:3 final size:3
Alignment explanation
Indices: 11540551--11540608 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
11540541 GCCTAATACA
11540551 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11540599 TAT TAT TAT T
1 TAT TAT TAT T
11540609 TTAAAATAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:11540798 original size:21 final size:20
Alignment explanation
Indices: 11540774--11540813 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
11540764 AGGAAAAACC
11540774 AAGAAAAAGAAGAAAAAAAAT
1 AAGAAAAAGAA-AAAAAAAAT
* *
11540795 AAGAGAAATAAAAAAAAAA
1 AAGAAAAAGAAAAAAAAAA
11540814 GAGAAGAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.05
Consensus pattern (20 bp):
AAGAAAAAGAAAAAAAAAAT
Found at i:11540825 original size:17 final size:16
Alignment explanation
Indices: 11540755--11540826 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 16
11540745 AATTTGAAAA
11540755 AAAAAAAAAAG-GAA-
1 AAAAAAAAAAGAGAAG
*
11540769 AAACCAAGAAAA-AGAAG
1 AAA--AAAAAAAGAGAAG
*
11540786 AAAAAAAATAAGAGAAAT
1 AAAAAAAA-AAGAG-AAG
11540804 AAAAAAAAAAGAGAAG
1 AAAAAAAAAAGAGAAG
11540820 AGAAAAA
1 A-AAAAA
11540827 GGAAAGATGA
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
14 3 0.07
15 4 0.09
16 14 0.30
17 15 0.33
18 10 0.22
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAAAAAAAGAGAAG
Found at i:11541723 original size:26 final size:27
Alignment explanation
Indices: 11541673--11541734 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
11541663 TGCATGTTCA
*
11541673 AAAAGAAAATAAAAAAAAACATGTT-G
1 AAAAGTAAATAAAAAAAAACATGTTGG
* * *
11541699 AAAAGTAAATAAAAGAAAGCTTGTTGG
1 AAAAGTAAATAAAAAAAAACATGTTGG
*
11541726 AAAAATAAA
1 AAAAGTAAA
11541735 GAAAGCAGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 21 0.70
27 9 0.30
ACGTcount: A:0.65, C:0.03, G:0.15, T:0.18
Consensus pattern (27 bp):
AAAAGTAAATAAAAAAAAACATGTTGG
Found at i:11542390 original size:21 final size:23
Alignment explanation
Indices: 11542341--11542401 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
11542331 AAATAATATG
*
11542341 TTTTGAAACAAAGAATGAAAAAC
1 TTTTGAAACAAAAAATGAAAAAC
11542364 TTTTGAAA-AAAAAAGTG-AAAA-
1 TTTTGAAACAAAAAA-TGAAAAAC
*
11542385 TTTTGAAATGAAAAAAT
1 TTTTGAAA-CAAAAAAT
11542402 TTCAAACTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
21 8 0.24
22 10 0.29
23 16 0.47
ACGTcount: A:0.57, C:0.03, G:0.13, T:0.26
Consensus pattern (23 bp):
TTTTGAAACAAAAAATGAAAAAC
Found at i:11542700 original size:22 final size:22
Alignment explanation
Indices: 11542674--11542787 Score: 108
Period size: 22 Copynumber: 5.1 Consensus size: 22
11542664 ACAAGATTTA
*
11542674 TAAGACATTCATGCATAATCTT
1 TAAGACATTCAAGCATAATCTT
* * *
11542696 TAAGACTTTCAAGTATAATCTC
1 TAAGACATTCAAGCATAATCTT
11542718 TAAG--ATCTCTAAGCATAATCTT
1 TAAGACAT-TC-AAGCATAATCTT
11542740 TAAGATC-TTCAAGCATAATCTT
1 TAAGA-CATTCAAGCATAATCTT
* * *
11542762 TAAGACTCTTCATGCAAAATCTT
1 TAAGAC-ATTCAAGCATAATCTT
11542785 TAA
1 TAA
11542788 AACTTCTGGG
Statistics
Matches: 76, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
20 1 0.01
21 3 0.04
22 53 0.70
23 18 0.24
24 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (22 bp):
TAAGACATTCAAGCATAATCTT
Found at i:11542737 original size:44 final size:45
Alignment explanation
Indices: 11542686--11542833 Score: 144
Period size: 44 Copynumber: 3.3 Consensus size: 45
11542676 AGACATTCAT
11542686 GCATAATCTTTAAGACTTTCAAGTATAATCTCTAAGATCTCT-AA
1 GCATAATCTTTAAGACTTTCAAGTATAATCTCTAAGATCTCTCAA
* * *
11542730 GCATAATCTTTAAGA-TCTTCAAGCATAATCTTTAAGA-CTCTTCAT
1 GCATAATCTTTAAGACT-TTCAAGTATAATCTCTAAGATCTC-TCAA
* * ** * *
11542775 GCAAAATCTTTAAAAC-TTCTGGGTATAATTTCTAAGATCT-TCAG
1 GCATAATCTTTAAGACTTTC-AAGTATAATCTCTAAGATCTCTCAA
*
11542819 GTATAATCTTTAAGA
1 GCATAATCTTTAAGA
11542834 TCTCCGGATA
Statistics
Matches: 84, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
43 4 0.05
44 52 0.62
45 26 0.31
46 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (45 bp):
GCATAATCTTTAAGACTTTCAAGTATAATCTCTAAGATCTCTCAA
Found at i:11542852 original size:22 final size:22
Alignment explanation
Indices: 11542738--11542876 Score: 77
Period size: 22 Copynumber: 6.2 Consensus size: 22
11542728 AAGCATAATC
* * * *
11542738 TTTAAGATCTTCAAGCATAATC
1 TTTAAGATCTTCAGGTAAAATT
* * *
11542760 TTTAAGACTCTTCATGCAAAATC
1 TTTAAGA-TCTTCAGGTAAAATT
* * *
11542783 TTTAA-AACTTCTGGGTATAATT
1 TTTAAGATCTTC-AGGTAAAATT
* * *
11542805 TCTAAGATCTTCAGGTATAATC
1 TTTAAGATCTTCAGGTAAAATT
*
11542827 TTTAAGATC-TCCGGATAAAATT
1 TTTAAGATCTTCAGG-TAAAATT
*
11542849 TTTAAGA-CTTACGGGTAAAATAT
1 TTTAAGATCTT-CAGGTAAAAT-T
11542872 TTTAA
1 TTTAA
11542877 AATTTTAAAG
Statistics
Matches: 93, Mismatches: 17, Indels: 13
0.76 0.14 0.11
Matches are distributed among these distances:
21 9 0.10
22 52 0.56
23 32 0.34
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (22 bp):
TTTAAGATCTTCAGGTAAAATT
Found at i:11542992 original size:22 final size:22
Alignment explanation
Indices: 11542945--11542998 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
11542935 CTTCAGGCGT
* *
11542945 AATCTCTAAGACCTTTCGGTAT
1 AATCTCTAAGACCTTTCAGTAC
11542967 AATCTCTAAGA-CTTTCAAGTAC
1 AATCTCTAAGACCTTTC-AGTAC
*
11542989 AATCTTTAAG
1 AATCTCTAAG
11542999 TTCCCCGAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.35
Consensus pattern (22 bp):
AATCTCTAAGACCTTTCAGTAC
Found at i:11543188 original size:19 final size:18
Alignment explanation
Indices: 11543149--11543242 Score: 68
Period size: 18 Copynumber: 5.3 Consensus size: 18
11543139 TTTATTGATT
* *
11543149 AAAAAAAATAA-AAAATC
1 AAAAACAATAACAAAAAC
*
11543166 AAAACCAATAACAAAAAC
1 AAAAACAATAACAAAAAC
*
11543184 AAAAATCAAGAA-AATAAAC
1 AAAAA-CAATAACAA-AAAC
* * *
11543203 AAAAA-ATTAAGAAAACC
1 AAAAACAATAACAAAAAC
* *
11543220 AAAAAAAAAAACAAAAAC
1 AAAAACAATAACAAAAAC
11543238 AAAAA
1 AAAAA
11543243 AAATTCAAAT
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
17 20 0.33
18 26 0.43
19 14 0.23
ACGTcount: A:0.79, C:0.12, G:0.02, T:0.07
Consensus pattern (18 bp):
AAAAACAATAACAAAAAC
Found at i:11543203 original size:25 final size:24
Alignment explanation
Indices: 11543159--11543207 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
11543149 AAAAAAAATA
11543159 AAAAATCAAAACCAATAACAAAAAC
1 AAAAATCAAAA-CAATAACAAAAAC
11543184 AAAAATCAAGAA-AATAAACAAAAA
1 AAAAATCAA-AACAAT-AACAAAAA
11543208 ATTAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 3 0.14
25 17 0.77
26 2 0.09
ACGTcount: A:0.76, C:0.14, G:0.02, T:0.08
Consensus pattern (24 bp):
AAAAATCAAAACAATAACAAAAAC
Found at i:11543209 original size:20 final size:19
Alignment explanation
Indices: 11543180--11543217 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
11543170 CCAATAACAA
11543180 AAACAAAAATCAAGAAAAT
1 AAACAAAAATCAAGAAAAT
*
11543199 AAACAAAAAATTAAGAAAA
1 AAAC-AAAAATCAAGAAAA
11543218 CCAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.76, C:0.08, G:0.05, T:0.11
Consensus pattern (19 bp):
AAACAAAAATCAAGAAAAT
Found at i:11543226 original size:20 final size:18
Alignment explanation
Indices: 11543179--11543245 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 18
11543169 ACCAATAACA
*
11543179 AAAACAAAAATCAAGAAAAT
1 AAAA-AAAAAT-AAGAAAAC
11543199 AAACAAAAAATTAAGAAAACC
1 AAA-AAAAAA-TAAGAAAA-C
*
11543220 AAAAAAAAA-AACAAAAAC
1 AAAAAAAAATAA-GAAAAC
11543238 AAAAAAAA
1 AAAAAAAA
11543246 TTCAAATCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
18 11 0.27
19 4 0.10
20 21 0.51
21 5 0.12
ACGTcount: A:0.81, C:0.10, G:0.03, T:0.06
Consensus pattern (18 bp):
AAAAAAAAATAAGAAAAC
Found at i:11543226 original size:44 final size:44
Alignment explanation
Indices: 11543177--11543296 Score: 124
Period size: 45 Copynumber: 2.8 Consensus size: 44
11543167 AAACCAATAA
* * *
11543177 CAAAAACAAAAATCAAGAAA-ATAAACAAA-AAATTAAG-AAAAC
1 CAAAAAAAAAAATCAAGAAACA-AAAAAAATAAATCAAGAAAAAC
11543219 CAAAAAAAAAAA-CAA-AAACAAAAAAAATTCAAATCAAGAAAAAC
1 CAAAAAAAAAAATCAAGAAACAAAAAAAA-T-AAATCAAGAAAAAC
* *
11543263 CAAAAAAAAAAAATCAAGGAAGAAAAAAAATAAA
1 C-AAAAAAAAAAATCAAGAAACAAAAAAAATAAA
11543297 AAACAGACTT
Statistics
Matches: 65, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
40 9 0.14
41 4 0.06
42 11 0.17
43 7 0.11
44 6 0.09
45 14 0.22
46 4 0.06
47 10 0.15
ACGTcount: A:0.77, C:0.11, G:0.05, T:0.07
Consensus pattern (44 bp):
CAAAAAAAAAAATCAAGAAACAAAAAAAATAAATCAAGAAAAAC
Found at i:11543285 original size:28 final size:31
Alignment explanation
Indices: 11543226--11543289 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 31
11543216 AACCAAAAAA
*
11543226 AAAAACAAAAACAAAAAAAATTCAAATCAAG
1 AAAAACAAAAACAAAAAAAATTCAAAGCAAG
* *
11543257 AAAAACCAAAA-AAAAAAAA-TC-AAGGAAG
1 AAAAACAAAAACAAAAAAAATTCAAAGCAAG
11543285 AAAAA
1 AAAAA
11543290 AAATAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 10 0.33
29 2 0.07
30 8 0.27
31 10 0.33
ACGTcount: A:0.77, C:0.11, G:0.06, T:0.06
Consensus pattern (31 bp):
AAAAACAAAAACAAAAAAAATTCAAAGCAAG
Found at i:11543769 original size:18 final size:18
Alignment explanation
Indices: 11543746--11543787 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
11543736 TTAAATTAAT
11543746 AAAAAATGACAA-AATAACA
1 AAAAAATG-CAAGAA-AACA
11543765 AAAAAATGCAAGAAAACA
1 AAAAAATGCAAGAAAACA
11543783 AAAAA
1 AAAAA
11543788 TATAAAACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.76, C:0.10, G:0.07, T:0.07
Consensus pattern (18 bp):
AAAAAATGCAAGAAAACA
Found at i:11544973 original size:19 final size:19
Alignment explanation
Indices: 11544936--11544973 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
11544926 GCTGTTTAAT
*
11544936 TTTTTTTTAAAGATGAAAA
1 TTTTTTTTAAAGATAAAAA
11544955 TTTTTTTT-AAGAATAAAAA
1 TTTTTTTTAAAG-ATAAAAA
11544974 ATAAATGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (19 bp):
TTTTTTTTAAAGATAAAAA
Found at i:11546646 original size:10 final size:10
Alignment explanation
Indices: 11546631--11546662 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
11546621 AAAATTATCT
11546631 TTTTGATAAA
1 TTTTGATAAA
11546641 TTTTGATAAA
1 TTTTGATAAA
11546651 TTTT-A-AAA
1 TTTTGATAAA
11546659 TTTT
1 TTTT
11546663 ATTAAAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 7 0.32
9 1 0.05
10 14 0.64
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (10 bp):
TTTTGATAAA
Found at i:11549074 original size:10 final size:9
Alignment explanation
Indices: 11549050--11549087 Score: 51
Period size: 10 Copynumber: 4.1 Consensus size: 9
11549040 TTTTTTTATT
11549050 TTATAAAAA
1 TTATAAAAA
11549059 TT-TAAAAA
1 TTATAAAAA
11549067 TATATAAAAA
1 T-TATAAAAA
11549077 TTAATAAAAA
1 TT-ATAAAAA
11549087 T
1 T
11549088 ATTTAATTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 7 0.27
9 4 0.15
10 15 0.58
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:11549074 original size:18 final size:19
Alignment explanation
Indices: 11549051--11549089 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
11549041 TTTTTTATTT
11549051 TATAAAAATT-TAAAAATA
1 TATAAAAATTATAAAAATA
11549069 TATAAAAATTAATAAAAATA
1 TATAAAAATT-ATAAAAATA
11549089 T
1 T
11549090 TTAATTCGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
20 9 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
TATAAAAATTATAAAAATA
Found at i:11550308 original size:15 final size:15
Alignment explanation
Indices: 11550279--11550312 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
11550269 ATTATTTATC
11550279 AAAATATTCAAATAA
1 AAAATATTCAAATAA
11550294 TAAAATATT-AAATAA
1 -AAAATATTCAAATAA
11550309 AAAA
1 AAAA
11550313 CTCTAATAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 6 0.33
16 8 0.44
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATATTCAAATAA
Found at i:11551519 original size:21 final size:20
Alignment explanation
Indices: 11551489--11551538 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
11551479 GATATTTTTA
11551489 AATA-TTTATACTTAAAAAAT
1 AATATTTTATA-TTAAAAAAT
11551509 AATATTTTATATTAAAAAAT
1 AATATTTTATATTAAAAAAT
11551529 AATATTTTAT
1 AATATTTTAT
11551539 TAATTTCGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 23 0.79
21 6 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
AATATTTTATATTAAAAAAT
Found at i:11551822 original size:13 final size:14
Alignment explanation
Indices: 11551806--11551835 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
11551796 CATTATATTT
11551806 TATATAAAAAT-TA
1 TATATAAAAATGTA
11551819 TATATAAAAATGTA
1 TATATAAAAATGTA
11551833 TAT
1 TAT
11551836 TAATAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (14 bp):
TATATAAAAATGTA
Found at i:11551908 original size:53 final size:53
Alignment explanation
Indices: 11551845--11551960 Score: 121
Period size: 54 Copynumber: 2.2 Consensus size: 53
11551835 TTAATAAATA
* *
11551845 TAAAATATATT-TTTTAATTTTATTAAATTTA-A-ATATAATTATTATTAAAATTT
1 TAAATTATATTATTTTAATATT-TTAAATTTATATATATAATTA-TATT-AAATTT
* * * *
11551898 TAAATTATATTATTTTTATATTTTACATTTATATTATATCATTATATTATATTT
1 TAAATTATATTATTTTAATATTTTAAATTTATA-TATATAATTATATTAAATTT
11551952 TAAATTATA
1 TAAATTATA
11551961 AAATATACAC
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
53 18 0.34
54 23 0.43
55 4 0.08
56 8 0.15
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (53 bp):
TAAATTATATTATTTTAATATTTTAAATTTATATATATAATTATATTAAATTT
Found at i:11551909 original size:24 final size:23
Alignment explanation
Indices: 11551864--11551934 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 23
11551854 TTTTTTAATT
11551864 TTATTAAA-TTTAAA-TATAATTA
1 TTATTAAATTTTAAATTAT-ATTA
11551886 TTATTAAAATTTTAAATTATATTA
1 TTATT-AAATTTTAAATTATATTA
* * *
11551910 TTTTTATATTTTACATTTATATTA
1 TTATTAAATTTTA-AATTATATTA
11551934 T
1 T
11551935 ATCATTATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 5 0.12
23 10 0.24
24 24 0.57
25 3 0.07
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (23 bp):
TTATTAAATTTTAAATTATATTA
Found at i:11551930 original size:13 final size:14
Alignment explanation
Indices: 11551912--11551949 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
11551902 TTATATTATT
*
11551912 TTTATATTTTA-CA
1 TTTATATTATATCA
11551925 TTTATATTATATCA
1 TTTATATTATATCA
11551939 -TTATATTATAT
1 TTTATATTATAT
11551950 TTTAAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 21 0.91
14 2 0.09
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTATATTATATCA
Found at i:11556925 original size:22 final size:20
Alignment explanation
Indices: 11556897--11556944 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 20
11556887 ACTCTCCATT
11556897 TTTTTTTC-TCTATTTTTTTGGC
1 TTTTTTTCTTCT-TTTTTTT--C
11556919 TTTTTTTCTTCTTTTTTTTC
1 TTTTTTTCTTCTTTTTTTTC
11556939 TTTTTT
1 TTTTTT
11556945 ATTTTTGGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.28
22 15 0.60
23 3 0.12
ACGTcount: A:0.02, C:0.12, G:0.04, T:0.81
Consensus pattern (20 bp):
TTTTTTTCTTCTTTTTTTTC
Found at i:11558036 original size:24 final size:25
Alignment explanation
Indices: 11557994--11558045 Score: 88
Period size: 24 Copynumber: 2.1 Consensus size: 25
11557984 TAGCTTTTCT
11557994 ATCCCAAATAATATCCATACTGAGA
1 ATCCCAAATAATATCCATACTGAGA
*
11558019 ATCCTAAAT-ATATCCATACTGAGA
1 ATCCCAAATAATATCCATACTGAGA
11558043 ATC
1 ATC
11558046 TTTTATGTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (25 bp):
ATCCCAAATAATATCCATACTGAGA
Found at i:11564320 original size:2 final size:2
Alignment explanation
Indices: 11564309--11564349 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
11564299 GATTCACCAC
*
11564309 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA -A TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11564349 T
1 T
11564350 TTTAAGAAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:11564840 original size:69 final size:70
Alignment explanation
Indices: 11564671--11564850 Score: 195
Period size: 69 Copynumber: 2.6 Consensus size: 70
11564661 TATATGCAAA
* * * * *
11564671 AAAAAAGTTGAAATTATTTTAGAAACAAAAATTAAAGCCAATTGGGTTGACTTGTTCAACCCAGA
1 AAAAAAGTTGAAATTATTTTAGTAACAAAAAGTAAAGCTAATTGGATTGACTCGTTCAACCCAGA
11564736 CCCAT
66 CCCAT
*** * *
11564741 AAAAATA-TTGAAATTA-AAAAGTAACAAAAAATAAAGCTAATTGGATTGACTCGTTCAA-CCTG
1 AAAAA-AGTTGAAATTATTTTAGTAACAAAAAGTAAAGCTAATTGGATTGACTCGTTCAACCCAG
*
11564803 TATCCAT
65 -ACCCAT
* * *
11564810 AAAAACGTTGAAATTATTTTGGTAACAAAAAGTAAACCTAA
1 AAAAAAGTTGAAATTATTTTAGTAACAAAAAGTAAAGCTAA
11564851 ATATATGAAT
Statistics
Matches: 89, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
68 3 0.03
69 53 0.60
70 32 0.36
71 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (70 bp):
AAAAAAGTTGAAATTATTTTAGTAACAAAAAGTAAAGCTAATTGGATTGACTCGTTCAACCCAGA
CCCAT
Found at i:11575327 original size:19 final size:19
Alignment explanation
Indices: 11575303--11575339 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
11575293 TAACACTTAA
11575303 TATGGTCTTGAAATTATAC
1 TATGGTCTTGAAATTATAC
11575322 TATGGTCTTGAAATTATA
1 TATGGTCTTGAAATTATA
11575340 TTATAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.43
Consensus pattern (19 bp):
TATGGTCTTGAAATTATAC
Found at i:11578999 original size:16 final size:16
Alignment explanation
Indices: 11578978--11579009 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
11578968 AAAGAGGTGG
11578978 CAAGAAAAAAAAGAAA
1 CAAGAAAAAAAAGAAA
*
11578994 CAAGAAAAGAAAGAAA
1 CAAGAAAAAAAAGAAA
11579010 GAAAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.06, G:0.16, T:0.00
Consensus pattern (16 bp):
CAAGAAAAAAAAGAAA
Found at i:11587059 original size:28 final size:28
Alignment explanation
Indices: 11586985--11587063 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
11586975 ATTTTCATCT
* *
11586985 AATTTAGGGCTTATTTGATTGAAAATAAA
1 AATTAAGGGCTTAATTGATT-AAAATAAA
* ** * *
11587014 AGTATAAAAGCTTTATTGATTACAATAAA
1 AAT-TAAGGGCTTAATTGATTAAAATAAA
11587043 AATTAAGGGCTTAATTGATTA
1 AATTAAGGGCTTAATTGATTA
11587064 TTCAATTTTT
Statistics
Matches: 38, Mismatches: 11, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
28 15 0.39
29 11 0.29
30 12 0.32
ACGTcount: A:0.43, C:0.05, G:0.15, T:0.37
Consensus pattern (28 bp):
AATTAAGGGCTTAATTGATTAAAATAAA
Found at i:11588300 original size:42 final size:42
Alignment explanation
Indices: 11588253--11588343 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
11588243 AATGATTTTT
* *
11588253 ATAAAAAGATAACTG-TTGTTTATAAAAACCATTATCTATTCC
1 ATAAAAAGATAAC-GATTATTTATAAAAACCATCATCTATTCC
* * * *
11588295 ATAAAAGGATGACGATTATTTATAACAACTATCATCTATTCC
1 ATAAAAAGATAACGATTATTTATAAAAACCATCATCTATTCC
11588337 ATAAAAA
1 ATAAAAA
11588344 AAATGTTGCA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.02
42 40 0.98
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (42 bp):
ATAAAAAGATAACGATTATTTATAAAAACCATCATCTATTCC
Found at i:11588418 original size:2 final size:2
Alignment explanation
Indices: 11588411--11588438 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11588401 CTATTCCATA
11588411 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11588439 TTGATCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11590137 original size:16 final size:16
Alignment explanation
Indices: 11590101--11590139 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
11590091 CATCACCAAT
11590101 AAATAAATAAAACACA
1 AAATAAATAAAACACA
*
11590117 TAATAAATAAATAC-CA
1 AAATAAATAAA-ACACA
11590133 AAATAAA
1 AAATAAA
11590140 ATGGCTCAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 18 0.90
17 2 0.10
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.18
Consensus pattern (16 bp):
AAATAAATAAAACACA
Found at i:11603969 original size:119 final size:118
Alignment explanation
Indices: 11603692--11604566 Score: 570
Period size: 119 Copynumber: 7.4 Consensus size: 118
11603682 CATTATTCAC
* * * * *
11603692 TCACGTGATCTTGGCTCAGTCCATATCATTTCTTATGATT-AGTGGTTTCGTCTCGATCATTTAT
1 TCACTTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCA-TGGTTTCATCCCGATCATCTAT
* ** * * * *
11603756 TCTCAACCTTGACTCGATCCTGGTCGCTTTTATTTTGACTTGTGGTTTTCTCACAA
65 TTTTGACCTCGACTCGATCCTAGTCGC-TTTATTTTGACTAGTGG-TTTCTCCCAA
* * * * * * *
11603812 TCACTTGGTCTTGGTTCAATCTAAATCATTTCTAATGATTCATGGTTTCATCCC-AGTCATTTAT
1 TCACTTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCATGGTTTCATCCCGA-TCATCTAT
* * * *
11603876 TTTTGACCTCGACTCGATCTTGGTTGCTTTATTTTGACTAGTGATTTCGTCCCAA
65 TTTTGACCTCGACTCGATCCTAGTCGCTTTATTTTGACTAGTGGTTTC-TCCCAA
** *
11603931 -CTACTTGATCTTGG-TCCAGTCCAGATCATTTCTTATGATTCATGACTTCATCCCGATCATTTA
1 TC-ACTTGATCTTGGCT-CAGTCCAGATCATTTCTTATGATTCATGGTTTCATCCCGATCATCTA
* * ** * * ** * ***
11603994 TTCTCGACCTTAACTC-AGTCCTAATCG-TATCATTTTGACTCTTAGTTTCGTCCTGG
64 TTTTTGACCTCGACTCGA-TCCTAGTCGCT-TTATTTTGACTAGTGGTTTC-TCCCAA
* * * * * * *
11604050 TCATTTGGTCTTAGCTCAGTCCAGATCGTCTT-TAATGATTCATAGTTTCATCCCGATTATCTAT
1 TCACTTGATCTTGGCTCAGTCCAGATCAT-TTCTTATGATTCATGGTTTCATCCCGATCATCTAT
* * * * ***
11604114 TTTTAACCTCGACTCGATCCTGGTC-TTTTCATTTTGACTAGTGGTTTCACCTTGG
65 TTTTGACCTCGACTCGATCCTAGTCGCTTT-ATTTTGACTAGTGGTTTCTCC-CAA
* * *
11604169 TCACTTGATCTTGGCTCAATCCAGATCATCTT-TGATAATTCATGGTTTCATCCCGATCATCTA-
1 TCACTTGATCTTGGCTCAGTCCAGATCAT-TTCTTATGATTCATGGTTTCATCCCGATCATCTAT
* * * * * * * *
11604232 TTTTGATCTCGAATCGATCTTAGTTGTTTTATTTTGACTAGTGGTTTTATCTCGA
65 TTTTGACCTCGACTCGATCCTAGTCGCTTTATTTTGACTAGTGG-TTTCTCCCAA
* * * * * * * ** * *
11604287 TCATTTGATCTTGACTTAGTCCTGATCATCTCTGATGATTTATGGTTTTGTCCCAATAATCTA-T
1 TCACTTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCATGGTTTCATCCCGATCATCTATT
* * * * **
11604351 TTTGACCTCGACTTGGTCCTAGTCACTTTATTTTGACTAATGGTTTCATCCTGA
66 TTTGACCTCGACTCGATCCTAGTCGCTTTATTTTGACTAGTGGTTTC-TCCCAA
* * * * * * **
11604405 TTACTTAATCTTGGTTCAGTCCAAATCATTTCTTATGATTCATAGTTTTATCTTGATCATCTATT
1 TCACTTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCATGGTTTCATCCCGATCATCTATT
* * * * * * * * * * * *
11604470 TTTTATCTCAACTTGGTTCTGGTCACTTTATTTTGACTCGTGATTT-TAGCTCGA
66 TTTGACCTCGACTCGATCCTAGTCGCTTTATTTTGACTAGTGGTTTCT--CCCAA
* * *
11604524 TCACTTAATCTTGGCTCAGTCCAGATTATTT-TCATGATTCATG
1 TCACTTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCATG
11604567 ATTGCGTCCT
Statistics
Matches: 593, Mismatches: 140, Indels: 46
0.76 0.18 0.06
Matches are distributed among these distances:
117 5 0.01
118 189 0.32
119 320 0.54
120 78 0.13
121 1 0.00
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.44
Consensus pattern (118 bp):
TCACTTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCATGGTTTCATCCCGATCATCTATT
TTTGACCTCGACTCGATCCTAGTCGCTTTATTTTGACTAGTGGTTTCTCCCAA
Found at i:11605769 original size:17 final size:18
Alignment explanation
Indices: 11605747--11605780 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
11605737 CTTAAGTCTT
11605747 CATTTTATC-TTTTTTTA
1 CATTTTATCATTTTTTTA
*
11605764 CATTTTTTCATTTTTTT
1 CATTTTATCATTTTTTT
11605781 TTCATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.74
Consensus pattern (18 bp):
CATTTTATCATTTTTTTA
Found at i:11605779 original size:8 final size:8
Alignment explanation
Indices: 11605745--11605808 Score: 65
Period size: 8 Copynumber: 7.5 Consensus size: 8
11605735 AACTTAAGTC
11605745 TTCATTTT
1 TTCATTTT
* *
11605753 ATCTTTTT
1 TTCATTTT
11605761 TTACATTTT
1 TT-CATTTT
11605770 TTCATTTTTTT
1 TTCA---TTTT
11605781 TTCATTTT
1 TTCATTTT
*
11605789 TTTATTTT
1 TTCATTTT
11605797 TTCATTTT
1 TTCATTTT
11605805 TTCA
1 TTCA
11605809 GTATTGATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
8 31 0.67
9 7 0.15
11 8 0.17
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (8 bp):
TTCATTTT
Found at i:11605779 original size:27 final size:27
Alignment explanation
Indices: 11605749--11605806 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
11605739 TAAGTCTTCA
11605749 TTTTATC-TTTTTTTACATTTTTTCATTT
1 TTTTATCATTTTTTT--ATTTTTTCATTT
*
11605777 TTTTTTCATTTTTTTATTTTTTCATTT
1 TTTTATCATTTTTTTATTTTTTCATTT
11605804 TTT
1 TTT
11605807 CAGTATTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 15 0.54
28 6 0.21
29 7 0.25
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (27 bp):
TTTTATCATTTTTTTATTTTTTCATTT
Found at i:11609791 original size:61 final size:61
Alignment explanation
Indices: 11609726--11609849 Score: 151
Period size: 61 Copynumber: 2.0 Consensus size: 61
11609716 TGGAAATATT
* * * ** *
11609726 TTCTTTTTTGAATTTCTAAGTTTTTCATCATTTGGGTTTATTTA-AAAATTCTCTTTATTAA
1 TTCTTTTTTGAATTTCTAAATTTTCCATAATTTGGGTCAATTTAGAAAATTCCCTTT-TTAA
* * *
11609787 TTCTTTTTTGGATTTTTAAATTTTCCATAATTTGGGTCAATTTAGAAATTTCCCTTTTTAA
1 TTCTTTTTTGAATTTCTAAATTTTCCATAATTTGGGTCAATTTAGAAAATTCCCTTTTTAA
11609848 TT
1 TT
11609850 TTCTTCTCTT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
61 43 0.81
62 10 0.19
ACGTcount: A:0.24, C:0.10, G:0.09, T:0.56
Consensus pattern (61 bp):
TTCTTTTTTGAATTTCTAAATTTTCCATAATTTGGGTCAATTTAGAAAATTCCCTTTTTAA
Found at i:11612555 original size:18 final size:19
Alignment explanation
Indices: 11612528--11612568 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
11612518 AAAAATAAAA
*
11612528 AAAAAGTAAATCAA-AAATC
1 AAAAAGTAAA-AAAGAAATC
11612547 AAAAA-TAAAAAAGAAATC
1 AAAAAGTAAAAAAGAAATC
11612565 AAAA
1 AAAA
11612569 TCAAAATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 2 0.10
18 13 0.65
19 5 0.25
ACGTcount: A:0.76, C:0.07, G:0.05, T:0.12
Consensus pattern (19 bp):
AAAAAGTAAAAAAGAAATC
Found at i:11612586 original size:12 final size:12
Alignment explanation
Indices: 11612535--11612610 Score: 59
Period size: 12 Copynumber: 6.2 Consensus size: 12
11612525 AAAAAAAAGT
11612535 AAATCAAAAATCAA
1 AAATC-AAAAT-AA
11612549 AAAT-AAAA-AA
1 AAATCAAAATAA
*
11612559 GAAATCAAAATCA
1 -AAATCAAAATAA
11612572 AAATCAAAATAA
1 AAATCAAAATAA
* *
11612584 AAAACAAGCA-AA
1 AAATCAA-AATAA
*
11612596 AAATCCAAATAA
1 AAATCAAAATAA
11612608 AAA
1 AAA
11612611 GATTGAAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
10 2 0.04
11 5 0.10
12 37 0.74
13 2 0.04
14 4 0.08
ACGTcount: A:0.74, C:0.12, G:0.03, T:0.12
Consensus pattern (12 bp):
AAATCAAAATAA
Found at i:11612597 original size:29 final size:30
Alignment explanation
Indices: 11612518--11612596 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
11612508 TCTAAATAAA
*
11612518 AAAAATAAAAAAAAAG-TAAATCAAAAATC
1 AAAAATAAAAAAAAAGCAAAATCAAAAATC
*
11612547 AAAAATAAAAAAGAAATCAAAATC-AAAATC
1 AAAAATAAAAAA-AAAGCAAAATCAAAAATC
*
11612577 -AAAATAAAAAACAAGCAAAA
1 AAAAATAAAAAAAAAGCAAAA
11612597 AATCCAAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
28 7 0.16
29 23 0.52
30 9 0.20
31 5 0.11
ACGTcount: A:0.76, C:0.09, G:0.04, T:0.11
Consensus pattern (30 bp):
AAAAATAAAAAAAAAGCAAAATCAAAAATC
Found at i:11612633 original size:15 final size:14
Alignment explanation
Indices: 11612602--11612640 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
11612592 CAAAAAATCC
* *
11612602 AAATAAAAAGATTG
1 AAATAAAAAAATAG
11612616 AAATAAAAATAATAG
1 AAATAAAAA-AATAG
11612631 AAATAAAAAA
1 AAATAAAAAA
11612641 GGATAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (14 bp):
AAATAAAAAAATAG
Found at i:11624053 original size:28 final size:30
Alignment explanation
Indices: 11623999--11624054 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 30
11623989 TTTTTATCTT
* *
11623999 TTTTTTCATAATATTAATAATATCTATACA
1 TTTTTACATAATATTAATAATACCTATACA
*
11624029 TTTTTACA-AATA-TAATGATACCTATA
1 TTTTTACATAATATTAATAATACCTATA
11624055 TTACATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 12 0.52
29 4 0.17
30 7 0.30
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.46
Consensus pattern (30 bp):
TTTTTACATAATATTAATAATACCTATACA
Found at i:11626813 original size:15 final size:15
Alignment explanation
Indices: 11626793--11626825 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
11626783 TTGATTTAGG
11626793 TTTTTTTC-TCTTTTT
1 TTTTTTTCAT-TTTTT
11626808 TTTTTTTCATTTTTT
1 TTTTTTTCATTTTTT
11626823 TTT
1 TTT
11626826 AATTAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 16 0.94
16 1 0.06
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTTTCATTTTTT
Found at i:11631653 original size:45 final size:46
Alignment explanation
Indices: 11631566--11631657 Score: 150
Period size: 45 Copynumber: 2.0 Consensus size: 46
11631556 TAGTCATTCG
* *
11631566 CTAAAGTATGATGTATTCTATGTTTGTGAAAGCCTGGAAGAAGGGA
1 CTAAAGTATGATCTATTCTAAGTTTGTGAAAGCCTGGAAGAAGGGA
*
11631612 CTAAAGTATGATCTATTCTAAG-TTGTGAAAGCCTGGCAGAAGGGA
1 CTAAAGTATGATCTATTCTAAGTTTGTGAAAGCCTGGAAGAAGGGA
11631657 C
1 C
11631658 GTGATGAAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
45 23 0.53
46 20 0.47
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (46 bp):
CTAAAGTATGATCTATTCTAAGTTTGTGAAAGCCTGGAAGAAGGGA
Found at i:11645215 original size:126 final size:126
Alignment explanation
Indices: 11644965--11645224 Score: 272
Period size: 126 Copynumber: 2.1 Consensus size: 126
11644955 ATAGAACAAG
* * * ** * ** * *
11644965 AGATCATGCTTTGAGGTTTTACAAATCTTGATATCTTTTAATGCTTTTCCCAATCAAAGGCTTTG
1 AGATTATGCTTGGAGGTCTTACAAATCTCAATATCTTATAATGCTCAT-CCAATCAAAGACATTG
* * * ** * *
11645030 AAACTTTGAAATTTTAAAATATTTTGCCCGTAGGTTTTGGAAATTATGCCTGAAAGTCTTCA
65 AAACTTTGAAAATTTAAAATATTTTGCCCGTAGATCTTACAAATTATACCTGAAAGTCTTAA
*
11645092 AGATTATGCTTGGAGGTCTTACAAATCTCAATATCTTATAATGCTCAT-CATATCAGAGACATTG
1 AGATTATGCTTGGAGGTCTTACAAATCTCAATATCTTATAATGCTCATCCA-ATCAAAGACATTG
* * * *
11645156 AAATTTTGAAAATTTAAAATGTTTTGCCCAG-AGATCTTACAGATTATACCTGGAAGTCTTAA
65 AAACTTTGAAAATTTAAAATATTTTGCCC-GTAGATCTTACAAATTATACCTGAAAGTCTTAA
*
11645218 ATATTAT
1 AGATTAT
11645225 ACTCGAAGGT
Statistics
Matches: 108, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
125 2 0.02
126 65 0.60
127 41 0.38
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (126 bp):
AGATTATGCTTGGAGGTCTTACAAATCTCAATATCTTATAATGCTCATCCAATCAAAGACATTGA
AACTTTGAAAATTTAAAATATTTTGCCCGTAGATCTTACAAATTATACCTGAAAGTCTTAA
Found at i:11645365 original size:22 final size:22
Alignment explanation
Indices: 11645347--11645402 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
11645337 TAAATTATGC
11645347 CCAGAGGTCTTAAAGATTATAA
1 CCAGAGGTCTTAAAGATTATAA
* *
11645369 TC-GAAGGTCTTAAAGATTATAT
1 CCAG-AGGTCTTAAAGATTATAA
*
11645391 CCAAAGGTCTTA
1 CCAGAGGTCTTA
11645403 TAAATCTTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
CCAGAGGTCTTAAAGATTATAA
Found at i:11645394 original size:142 final size:142
Alignment explanation
Indices: 11645121--11645444 Score: 364
Period size: 142 Copynumber: 2.2 Consensus size: 142
11645111 TACAAATCTC
* * * * * *
11645121 AATATCTTAT-AATGCTCATCATATCAGAGACATTGAAATTTTGAAAATTTAAAATGTTTTGCCC
1 AATATCTT-TGAATGCTCATCGTATCAGAGGCATTGAAACTTTAAAAATTTAAAATATTTTGACC
* ** * * * * *
11645185 AGAGATCTTACAGATTATACCTGGAAGTCTTAAATATTATACTCGAAGGTTTTAGAGAATATGTC
65 AGAGATCTTACAAATTATACCCAGAAGTCTTAAAGATTATAATCGAAGGTCTTAAAGAATATATC
11645250 CAAAGATCTTAGA
130 CAAAGATCTTAGA
*
11645263 AATATCTTTGAATGCTCATCGTATCAGAGGCATTGAAACTTTAAAAATTTAAAATATTTT-ACCT
1 AATATCTTTGAATGCTCATCGTATCAGAGGCATTGAAACTTTAAAAATTTAAAATATTTTGACCA
** * * *
11645327 GTAGATCTTGTAAATTATGCCCAGAGGTCTTAAAGATTATAATCGAAGGTCTTAAAGATTATATC
66 G-AGATCTTACAAATTATACCCAGAAGTCTTAAAGATTATAATCGAAGGTCTTAAAGAATATATC
* *
11645392 CAAAGGTCTTATA
130 CAAAGATCTTAGA
11645405 AATCTTGACATCTTTGAATGCTCATCGTATCAGAGGCATT
1 AA---T---ATCTTTGAATGCTCATCGTATCAGAGGCATT
11645445 CACTACAGGG
Statistics
Matches: 152, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
141 4 0.03
142 116 0.76
145 1 0.01
148 31 0.20
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (142 bp):
AATATCTTTGAATGCTCATCGTATCAGAGGCATTGAAACTTTAAAAATTTAAAATATTTTGACCA
GAGATCTTACAAATTATACCCAGAAGTCTTAAAGATTATAATCGAAGGTCTTAAAGAATATATCC
AAAGATCTTAGA
Found at i:11645636 original size:33 final size:33
Alignment explanation
Indices: 11645599--11645664 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
11645589 AAAAAATACT
* *
11645599 ACTAACTTAGTAGCATTTGTAAACACAAATGCC
1 ACTAACTTAGCAACATTTGTAAACACAAATGCC
* *
11645632 ACTAACTTAGCAACATTTGTAGACATAAATGCC
1 ACTAACTTAGCAACATTTGTAAACACAAATGCC
11645665 GTTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.27
Consensus pattern (33 bp):
ACTAACTTAGCAACATTTGTAAACACAAATGCC
Found at i:11645843 original size:34 final size:34
Alignment explanation
Indices: 11645800--11645881 Score: 155
Period size: 34 Copynumber: 2.4 Consensus size: 34
11645790 ATTTTTCTAG
11645800 AAATGCCACTAAATTTAGCAGCATTTGTATGCAA
1 AAATGCCACTAAATTTAGCAGCATTTGTATGCAA
*
11645834 AAATGCCACTAAATTTAGTAGCATTTGTATGCAA
1 AAATGCCACTAAATTTAGCAGCATTTGTATGCAA
11645868 AAATGCCACTAAAT
1 AAATGCCACTAAAT
11645882 GAGGGAATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (34 bp):
AAATGCCACTAAATTTAGCAGCATTTGTATGCAA
Found at i:11646087 original size:24 final size:25
Alignment explanation
Indices: 11646042--11646088 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
11646032 TAACATAAAG
*
11646042 TTTAATACATTAACATTCAAATTGT
1 TTTAATACATTAACATACAAATTGT
* *
11646067 TTTAGTACATTAAC-TAGAAATT
1 TTTAATACATTAACATACAAATT
11646089 TAAAATGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 6 0.32
25 13 0.68
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (25 bp):
TTTAATACATTAACATACAAATTGT
Found at i:11647187 original size:162 final size:161
Alignment explanation
Indices: 11646979--11648121 Score: 615
Period size: 162 Copynumber: 7.1 Consensus size: 161
11646969 TAATTTGAGT
* * ** *
11646979 TATCTAAACTATTAAAACA-AAACAATAATTGTAAATTTGCATTTTTGCCTTTTAAC-A-ATACA
1 TATCTAAACTATTAAAACATAAA-AATAATTATAAAATTATATTTTTGCCCTTTAACGACATA-A
** * * *
11647041 AAAAGTCCTAAACAA-ACATAAATTGTAACTTATTCATACATATCAAATCGTAGAAACCAAATTC
64 AAAAGTCCTAAA-AAGACATAAACGGTAACTT-TTCACACATATC-AATCGTGGAAACCAAGTTC
**
11647105 AATCAT-TTGAACAAGTTTAATATCATGTATTGAAGC
126 AATCATCCAG-ACAAGTTTAATATCATGTATTGAAGC
* * ** *
11647141 TATCTAAACTGTTAAAACATAAATATAATTATAAAATTATATTTTTGCCCTTTAACGATGTAACA
1 TATCTAAACTATTAAAACATAAAAATAATTATAAAATTATATTTTTGCCCTTTAACGACATAAAA
* * *
11647206 AAGTCATAAAAAGACATAAACGGTAACATTTTCACGCATATCAATTGTGGAAACCAAGTTCAATC
66 AAGTCCTAAAAAGACATAAACGGTAAC-TTTTCACACATATCAATCGTGGAAACCAAGTTCAATC
* *
11647271 ATTCAGACAAGTTTAATACCATGTATTGAAGC
130 ATCCAGACAAGTTTAATATCATGTATTGAAGC
* * * *
11647303 TAATGCCATATATTGAAGCTATTTAAACTGTTAAAATAGAATAATAAATACAAATTTATATTTTG
1 T-AT--C---TA---AA-CTATTAAAAC----ATAA-A-AATAAT-TATA-AAA-TTATATTTTT
* * * * * *
11647368 GCCTTTTAACGACATAAAAAAGTGCTAAACAGATATAAACGATAACTTTTTCACACATATCATTC
47 GCCCTTTAACGACATAAAAAAGTCCTAAAAAGACATAAACGGTAAC-TTTTCACACATATCAATC
* * * * *
11647433 GTGGAAACCAAGTTCAATCATTC-GAAAAAGTTTAATATAATATATTTAAGC
111 GTGGAAACCAAGTTCAATCATCCAG-ACAAGTTTAATATCATGTATTGAAGC
* * * * * * *
11647484 TGTTTAAACTATTAAAACATAAAAATAATTGTAAAATGATATTTTTACCCTTTAACTACATAACA
1 TATCTAAACTATTAAAACATAAAAATAATTATAAAATTATATTTTTGCCCTTTAACGACATAAAA
* ** ** * * *
11647549 AAGTCCTAAAAAGACATAAACGGTAACTTCTGCGTATGTATCAATCATGAAAACCAAGTTCAATT
66 AAGTCCTAAAAAGACATAAACGGTAACTT-TTCACACATATCAATCGTGGAAACCAAGTTCAATC
* * *
11647614 ATCCAGATAAGTTTAATATTATGTATTGAAAC
130 ATCCAGACAAGTTTAATATCATGTATTGAAGC
* * * * * * * *
11647646 TATCTACAC-AGTTAAAACAGAATAATAAATGTAAATTTGA-ATTTTAGCCTTTTCATA-G-CAT
1 TATCTAAACTA-TTAAAACATAAAAATAATTATAAAATT-ATATTTTTGCCCTTT-A-ACGACAT
* * * **
11647707 AAAAAA-T-CT---TA-A-AT--A--G--A----T-ACACATATCAA-CTATGCAAATTAAGTTC
62 AAAAAAGTCCTAAAAAGACATAAACGGTAACTTTTCACACATATCAATC-GTGGAAACCAAGTTC
* * * * *
11647753 AATCATTCAAACAAGTTTTATATCATTTATTAAAGC
126 AATCATCCAGACAAGTTTAATATCATGTATTGAAGC
*** * * ** * * * *
11647789 TATCTAAACTATTAAAATGGAATAATAA-AAGCAAATT-TGCATTTTGGCCTTTTAACGGCACAA
1 TATCTAAACTATTAAAACATAAAAATAATTATAAAATTAT--ATTTTTGCCCTTTAACGACATAA
* * ** * * *
11647852 AAAAGT-GT--TAA-ACA-AAACAATAACTTTTTTACAC--ATCAATTGTGGAAACTAAGTTCAA
64 AAAAGTCCTAAAAAGACATAAACGGTAAC-TTTTCACACATATCAATCGTGGAAACCAAGTTCAA
* * * *
11647910 TTATTCAAACAAGTTTAATATCATGTATTTAAGC
128 TCATCCAGACAAGTTTAATATCATGTATTGAAGC
* * * * *
11647944 TATCTAAACTGTTAAAACATAAATATAACTACT-TATTTATATTTTTGCCCTTTAAC-AGCATAA
1 TATCTAAACTATTAAAACATAAAAATAATTA-TAAAATTATATTTTTGCCCTTTAACGA-CATAA
* * * * * * * *
11648007 TAAAGTTCTAAAGAGATATAAATGGTAACTTTTCACACATATCAACCGTGAAAATCAAGTTCAAT
64 AAAAGTCCTAAAAAGACATAAACGGTAACTTTTCACACATATCAATCGTGGAAACCAAGTTCAAT
* * *
11648072 CATTCA-AGTAAGTTTAATATAATGTATTGAAGC
129 CATCCAGA-CAAGTTTAATATCATGTATTGAAGC
*
11648105 TATCCAAAC-AGTTAAAA
1 TATCTAAACTA-TTAAAA
11648122 AAATAACTGC
Statistics
Matches: 752, Mismatches: 161, Indels: 137
0.72 0.15 0.13
Matches are distributed among these distances:
141 1 0.00
142 7 0.01
143 89 0.12
144 3 0.00
145 2 0.00
146 1 0.00
147 1 0.00
149 1 0.00
151 2 0.00
153 1 0.00
155 96 0.13
156 7 0.01
157 6 0.01
158 1 0.00
159 10 0.01
160 10 0.01
161 65 0.09
162 237 0.32
163 46 0.06
164 7 0.01
165 7 0.01
166 1 0.00
167 3 0.00
168 2 0.00
171 11 0.01
172 10 0.01
175 2 0.00
176 3 0.00
177 1 0.00
178 5 0.01
179 3 0.00
180 5 0.01
181 106 0.14
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (161 bp):
TATCTAAACTATTAAAACATAAAAATAATTATAAAATTATATTTTTGCCCTTTAACGACATAAAA
AAGTCCTAAAAAGACATAAACGGTAACTTTTCACACATATCAATCGTGGAAACCAAGTTCAATCA
TCCAGACAAGTTTAATATCATGTATTGAAGC
Found at i:11647311 original size:19 final size:19
Alignment explanation
Indices: 11647284--11647323 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
11647274 CAGACAAGTT
*
11647284 TAATACCATGTATTGAAGC
1 TAATACCATATATTGAAGC
*
11647303 TAATGCCATATATTGAAGC
1 TAATACCATATATTGAAGC
11647322 TA
1 TA
11647324 TTTAAACTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (19 bp):
TAATACCATATATTGAAGC
Found at i:11647439 original size:181 final size:181
Alignment explanation
Indices: 11647132--11647469 Score: 461
Period size: 181 Copynumber: 1.9 Consensus size: 181
11647122 TAATATCATG
* * *
11647132 TATTGAAGCTATCTAAACTGTTAAAACATAAATATAATTATAAAATTATATTTTTGCCCTTTAAC
1 TATTGAAGCTATCTAAACTGTTAAAACATAAATATAAATACAAAATTATATTTTGGCCCTTTAAC
** * * *
11647197 GATGTAACAAAGTCATAAAAAGACATAAACGGTAACATTTTCACGCATATCAATTGTGGAAACCA
66 GACATAAAAAAGTCATAAAAAGACATAAACGATAACATTTTCACACATATCAATTGTGGAAACCA
*
11647262 AGTTCAATCATTC-AGACAAGTTTAATACCATGTATTGAAGCTAATGCCATA
131 AGTTCAATCATTCGA-AAAAGTTTAATACCATGTATTGAAGCTAATGCCATA
* * *
11647313 TATTGAAGCTATTTAAACTGTT-AAA-ATAGAATAATAAATACAAATTTATATTTTGGCCTTTTA
1 TATTGAAGCTATCTAAACTGTTAAAACATA-AAT-ATAAATACAAAATTATATTTTGGCCCTTTA
* * *
11647376 ACGACATAAAAAAGTGC-TAAACAGATATAAACGATAACTTTTTCACACATATC-ATTCGTGGAA
64 ACGACATAAAAAAGT-CATAAAAAGACATAAACGATAACATTTTCACACATATCAATT-GTGGAA
11647439 ACCAAGTTCAATCATTCGAAAAAGTTTAATA
127 ACCAAGTTCAATCATTCGAAAAAGTTTAATA
11647470 TAATATATTT
Statistics
Matches: 137, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
179 3 0.02
180 9 0.07
181 123 0.90
182 2 0.01
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.32
Consensus pattern (181 bp):
TATTGAAGCTATCTAAACTGTTAAAACATAAATATAAATACAAAATTATATTTTGGCCCTTTAAC
GACATAAAAAAGTCATAAAAAGACATAAACGATAACATTTTCACACATATCAATTGTGGAAACCA
AGTTCAATCATTCGAAAAAGTTTAATACCATGTATTGAAGCTAATGCCATA
Found at i:11653753 original size:23 final size:23
Alignment explanation
Indices: 11653727--11653770 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
11653717 TTGATTTGGT
11653727 TGCTAGCTAAATTGAGCTTAAGG
1 TGCTAGCTAAATTGAGCTTAAGG
* *
11653750 TGCTAGCTAATTTGGGCTTAA
1 TGCTAGCTAAATTGAGCTTAA
11653771 ATGCAAGCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (23 bp):
TGCTAGCTAAATTGAGCTTAAGG
Found at i:11653779 original size:22 final size:23
Alignment explanation
Indices: 11653731--11653791 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
11653721 TTTGGTTGCT
* * * *
11653731 AGCTAAATTGAGCTTAAGGTGCT
1 AGCTAATTTGGGCTTAAGATGCA
11653754 AGCTAATTTGGGCTTAA-ATGCA
1 AGCTAATTTGGGCTTAAGATGCA
* *
11653776 AGCTGATCTGGGCTTA
1 AGCTAATTTGGGCTTA
11653792 GGTGCCAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 17 0.53
23 15 0.47
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (23 bp):
AGCTAATTTGGGCTTAAGATGCA
Found at i:11653806 original size:22 final size:22
Alignment explanation
Indices: 11653781--11653946 Score: 88
Period size: 22 Copynumber: 7.5 Consensus size: 22
11653771 ATGCAAGCTG
* *
11653781 ATCTGGGCTTAGGTGCCAATTA
1 ATCTAGGCTTAGGTGCCAACTA
*
11653803 ATCTAGGCTTGGGT-CTCAACTA
1 ATCTAGGCTTAGGTGC-CAACTA
* *
11653825 CT-TAAGGCTT-GGATGCCAATTA
1 ATCT-AGGCTTAGG-TGCCAACTA
* * * * *
11653847 ATATGGGCTTAAAGTGCTAGCTA
1 ATCTAGGCTT-AGGTGCCAACTA
* *
11653870 ATCTGGGCTTTGGTGCCAACTA
1 ATCTAGGCTTAGGTGCCAACTA
* * *
11653892 CA-CTAAGCTTAGGTGCTAGCTA
1 -ATCTAGGCTTAGGTGCCAACTA
* *
11653914 ATCTAGGTTTGGGTGCCAACTA
1 ATCTAGGCTTAGGTGCCAACTA
* *
11653936 ATTTGGGCTTA
1 ATCTAGGCTTA
11653947 TGCACTAGCT
Statistics
Matches: 105, Mismatches: 30, Indels: 18
0.69 0.20 0.12
Matches are distributed among these distances:
21 5 0.05
22 81 0.77
23 18 0.17
24 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (22 bp):
ATCTAGGCTTAGGTGCCAACTA
Found at i:11653931 original size:89 final size:88
Alignment explanation
Indices: 11653756--11653946 Score: 217
Period size: 89 Copynumber: 2.2 Consensus size: 88
11653746 AAGGTGCTAG
* * * *
11653756 CTAATTTGGGCTTAAATGCAAGCTGATCTGGGCTTAGGTGCCAATTAATCTAGGCTTGGGTCTCA
1 CTAATTTGGGCTTAAATGCAAGCTAATCTGGGCTTAGGTGCCAACTAATCTAAGCTTAGGTCTCA
*
11653821 ACTACTTAAGGCTTGGATGCCAA
66 ACTAATTAAGGCTTGGATGCCAA
* * * *
11653844 TTAATATGGGCTTAAAGTGCTAGCTAATCTGGGCTTTGGTGCCAACTACA-CTAAGCTTAGGTGC
1 CTAATTTGGGCTTAAA-TGCAAGCTAATCTGGGCTTAGGTGCCAACTA-ATCTAAGCTTAGGT-C
* * *
11653908 T-AGCTAATCT-AGGTTTGGGTGCCAA
63 TCAACTAAT-TAAGGCTTGGATGCCAA
11653933 CTAATTTGGGCTTA
1 CTAATTTGGGCTTA
11653947 TGCACTAGCT
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
88 14 0.16
89 67 0.79
90 4 0.05
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (88 bp):
CTAATTTGGGCTTAAATGCAAGCTAATCTGGGCTTAGGTGCCAACTAATCTAAGCTTAGGTCTCA
ACTAATTAAGGCTTGGATGCCAA
Found at i:11653946 original size:44 final size:45
Alignment explanation
Indices: 11653829--11653946 Score: 120
Period size: 44 Copynumber: 2.7 Consensus size: 45
11653819 CAACTACTTA
* *
11653829 AGGC-TTGGATGCCAATTAATATGGGCTTAAAGTGCTAGCTAATCT
1 AGGCTTTGGGTGCCAACTAATATGGGCTT-AAGTGCTAGCTAATCT
* * *
11653874 GGGCTTT-GGTGCCAACTACACTA--AGCTTAGGTGCTAGCTAATCT
1 AGGCTTTGGGTGCCAACTA-A-TATGGGCTTAAGTGCTAGCTAATCT
*
11653918 AGG-TTTGGGTGCCAACTAATTTGGGCTTA
1 AGGCTTTGGGTGCCAACTAATATGGGCTTA
11653947 TGCACTAGCT
Statistics
Matches: 59, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
42 1 0.02
43 4 0.07
44 33 0.56
45 16 0.27
46 3 0.05
47 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (45 bp):
AGGCTTTGGGTGCCAACTAATATGGGCTTAAGTGCTAGCTAATCT
Found at i:11656392 original size:128 final size:130
Alignment explanation
Indices: 11656019--11656445 Score: 316
Period size: 133 Copynumber: 3.3 Consensus size: 130
11656009 TTTTGAAACA
* * * * * * * * * * *
11656019 TTTTTTTAAAACATTTGACTTCATCTTTAGCATTTTGCTTTCTTGAATT-ATAATATTATAACTA
1 TTTTTTTTAAACATCTGACTTCAACTTTAACATTCTGATTTCTTGAATTCTTGAGATTTTAACTG
* * * * * * * *
11656083 AAGCTTTATTCA-TTTTTTGCCCGAGATCATTATC-TCTTAGGTGCATATCTTTTTTTCTTTACT
66 AAGCATTATTCACTTTTAT-CCTGA-ATCCTCATCTTC-GAGGTGCATGTCTTTATTTCTTTACT
11656146 CTT
128 CTT
* * ** *
11656149 TCTTTCTTTAAAAACATCTGACTTTATTTTTAACATTCTGCTTTCTTGAATTCTTGAGATTTTAA
1 T-TTT-TTT-TAAACATCTGACTTCAACTTTAACATTCTGATTTCTTGAATTCTTGAGATTTTAA
* * * ** *
11656214 CTGAAGCATTATTCTCTTTTATCCTGGATCCTCATTTTCTTGGTACATGTCTTTATTTCTTTACT
63 CTGAAGCATTATTCACTTTTATCCTGAATCCTCATCTTCGAGGTGCATGTCTTTATTTCTTTACT
11656279 CTT
128 CTT
* *
11656282 TTTTTTTTTAACATCTGACTTCAACTTTAGA-A-TCT-ATTTCTTGAATTCTTGGGATTTTAA-T
1 TTTTTTTTAAACATCTGACTTCAACTTTA-ACATTCTGATTTCTTGAATTCTTGAGATTTTAACT
* ** * *
11656343 GTAA-CTTTATTCACTTTT-TGCCTTGAATTTTCATCTTCGAGGTGCATGTCTTTCTTTCTTTGC
65 G-AAGCATTATTCACTTTTAT-CC-TGAATCCTCATCTTCGAGGTGCATGTCTTTATTTCTTTAC
11656406 T-TT
127 TCTT
* * *
11656409 TTTTTTTTAGAAACATTTGATTTTAACTTTAACATTC
1 TTTTTTTT--AAACATCTGACTTCAACTTTAACATTC
11656446 ACTTTTTACC
Statistics
Matches: 239, Mismatches: 44, Indels: 28
0.77 0.14 0.09
Matches are distributed among these distances:
126 1 0.00
127 26 0.11
128 58 0.24
129 21 0.09
130 21 0.09
131 7 0.03
132 6 0.03
133 69 0.29
134 25 0.10
135 5 0.02
ACGTcount: A:0.22, C:0.17, G:0.09, T:0.52
Consensus pattern (130 bp):
TTTTTTTTAAACATCTGACTTCAACTTTAACATTCTGATTTCTTGAATTCTTGAGATTTTAACTG
AAGCATTATTCACTTTTATCCTGAATCCTCATCTTCGAGGTGCATGTCTTTATTTCTTTACTCTT
Found at i:11656502 original size:17 final size:16
Alignment explanation
Indices: 11656482--11656549 Score: 55
Period size: 16 Copynumber: 4.0 Consensus size: 16
11656472 GATATGCATG
11656482 TTTTTCTTTTTTTATTTT
1 TTTTTC-TTTTTT-TTTT
* * *
11656500 TTTTTCCTTTGCTCTTTC
1 TTTTT-CTTT-TTTTTTT
11656518 TTTTTCTTTTTTTTTT
1 TTTTTCTTTTTTTTTT
* *
11656534 CTTTGCTTTTTTTTTT
1 TTTTTCTTTTTTTTTT
11656550 AAAACATTTG
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
16 18 0.45
17 4 0.10
18 16 0.40
19 2 0.05
ACGTcount: A:0.01, C:0.13, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTT
Found at i:11656527 original size:28 final size:27
Alignment explanation
Indices: 11656490--11656550 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 27
11656480 TGTTTTTCTT
11656490 TTTTTATTTTTTTTTCCTTTGCTCTTTC
1 TTTTTATTTTTTTTTCCTTTGCT-TTTC
* * *
11656518 TTTTTCTTTTTTTTTTCTTTGCTTTTT
1 TTTTTATTTTTTTTTCCTTTGCTTTTC
11656545 TTTTTA
1 TTTTTA
11656551 AAACATTTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.80
Consensus pattern (27 bp):
TTTTTATTTTTTTTTCCTTTGCTTTTC
Found at i:11662812 original size:13 final size:13
Alignment explanation
Indices: 11662794--11662818 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11662784 TTATTTGTGT
11662794 TTTAATTTTTTAG
1 TTTAATTTTTTAG
11662807 TTTAATTTTTTA
1 TTTAATTTTTTA
11662819 TTTTTTAGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTAATTTTTTAG
Found at i:11662873 original size:17 final size:19
Alignment explanation
Indices: 11662851--11662889 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
11662841 ATCAATTAGT
11662851 AAAAAA-GTAAAAAA-AAA
1 AAAAAAGGTAAAAAAGAAA
11662868 AAAAAAGGTAAAAAAGAAA
1 AAAAAAGGTAAAAAAGAAA
11662887 AAA
1 AAA
11662890 GAAAATTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 6 0.30
18 8 0.40
19 6 0.30
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (19 bp):
AAAAAAGGTAAAAAAGAAA
Found at i:11663490 original size:32 final size:32
Alignment explanation
Indices: 11663462--11663527 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
11663452 TGAATTTGCA
11663462 TTAC-TAATATTATATTTGCATGATAATTTAT
1 TTACTTAATATTATATTTGCATGATAATTTAT
* * *
11663493 TTGCTTAATATTTTATTTGCATGATTAATATAT
1 TTACTTAATATTATATTTGCATGA-TAATTTAT
11663526 TT
1 TT
11663528 GTGTGATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 3 0.10
32 18 0.60
33 9 0.30
ACGTcount: A:0.32, C:0.06, G:0.08, T:0.55
Consensus pattern (32 bp):
TTACTTAATATTATATTTGCATGATAATTTAT
Found at i:11663495 original size:16 final size:16
Alignment explanation
Indices: 11663474--11663528 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
11663464 ACTAATATTA
11663474 TATTTGCATGATAATT
1 TATTTGCATGATAATT
* * *
11663490 TATTTGCTTAATATTT
1 TATTTGCATGATAATT
*
11663506 TATTTGCATGATTAATA
1 TATTTGCATGA-TAATT
11663523 TATTTG
1 TATTTG
11663529 TGTGATTTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 22 0.71
17 9 0.29
ACGTcount: A:0.29, C:0.05, G:0.11, T:0.55
Consensus pattern (16 bp):
TATTTGCATGATAATT
Found at i:11663520 original size:20 final size:20
Alignment explanation
Indices: 11663455--11663523 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 20
11663445 TTTTGTATGA
* * *
11663455 ATTTGCATTACTAATATTAT
1 ATTTGCATGATTAATATTTT
11663475 ATTTGCATGA-T-A-A-TTT
1 ATTTGCATGATTAATATTTT
11663491 ATTTGC----TTAATATTTT
1 ATTTGCATGATTAATATTTT
11663507 ATTTGCATGATTAATAT
1 ATTTGCATGATTAATAT
11663524 ATTTGTGTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 16
0.68 0.04 0.28
Matches are distributed among these distances:
13 1 0.03
14 1 0.03
15 1 0.03
16 17 0.44
17 1 0.03
18 1 0.03
19 1 0.03
20 16 0.41
ACGTcount: A:0.32, C:0.07, G:0.09, T:0.52
Consensus pattern (20 bp):
ATTTGCATGATTAATATTTT
Found at i:11663555 original size:21 final size:21
Alignment explanation
Indices: 11663516--11663556 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11663506 TATTTGCATG
**
11663516 ATTAATATATTTGTGTGATTT
1 ATTAATATATTTGCATGATTT
11663537 ATTAATATATTTGCATGATT
1 ATTAATATATTTGCATGATT
11663557 ATCAACTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.54
Consensus pattern (21 bp):
ATTAATATATTTGCATGATTT
Found at i:11663658 original size:56 final size:56
Alignment explanation
Indices: 11663586--11663723 Score: 165
Period size: 56 Copynumber: 2.5 Consensus size: 56
11663576 CGATTGCATG
* * * *
11663586 ATTATTATTATATATTTAATTGCATGTTTATTTATATGGTTTATATTATTATTTGT
1 ATTAGTATTATATATTTAATTACATGTTTATTTACATGATTTATATTATTATTTGT
* * * *
11663642 ATTAGTATTATATATTTAATTATATGTTTATTTGCATGATTTATATTATTACTTGC
1 ATTAGTATTATATATTTAATTACATGTTTATTTACATGATTTATATTATTATTTGT
* *
11663698 A--AG-AATATATATTTAATTACACGTTT
1 ATTAGTATTATATATTTAATTACATGTTT
11663724 TATATTATTA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
53 20 0.28
54 2 0.03
56 49 0.69
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.55
Consensus pattern (56 bp):
ATTAGTATTATATATTTAATTACATGTTTATTTACATGATTTATATTATTATTTGT
Found at i:11663697 original size:21 final size:21
Alignment explanation
Indices: 11663673--11663760 Score: 76
Period size: 21 Copynumber: 4.3 Consensus size: 21
11663663 ATATGTTTAT
* *
11663673 TTGCATGATTTATATTATTAC
1 TTGCATGATATATATTATTAA
*
11663694 TTGCAAGA-ATATA-TATTTAA
1 TTGCATGATATATATTA-TTAA
* * * *
11663714 TTACACGTTTTATATTATTAA
1 TTGCATGATATATATTATTAA
11663735 TTGCATGATATATA-T-TTAA
1 TTGCATGATATATATTATTAA
11663754 TTGCATG
1 TTGCATG
11663761 TCTATTTGCA
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
19 13 0.25
20 13 0.25
21 25 0.47
22 2 0.04
ACGTcount: A:0.34, C:0.08, G:0.10, T:0.48
Consensus pattern (21 bp):
TTGCATGATATATATTATTAA
Found at i:11663707 original size:41 final size:40
Alignment explanation
Indices: 11663662--11663760 Score: 126
Period size: 41 Copynumber: 2.5 Consensus size: 40
11663652 TATATTTAAT
* * *
11663662 TATATGTTTATTTGCATGATTTATATTATTACTTGCAAGAA
1 TATATATTTAATTGCATGATTTATATTATTAATTGCAAG-A
* * * *
11663703 TATATATTTAATTACACGTTTTATATTATTAATTGCATGA
1 TATATATTTAATTGCATGATTTATATTATTAATTGCAAGA
11663743 TATATATTTAATTGCATG
1 TATATATTTAATTGCATG
11663761 TCTATTTGCA
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 17 0.35
41 32 0.65
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.49
Consensus pattern (40 bp):
TATATATTTAATTGCATGATTTATATTATTAATTGCAAGA
Found at i:11663746 original size:19 final size:19
Alignment explanation
Indices: 11663662--11663760 Score: 72
Period size: 21 Copynumber: 4.9 Consensus size: 19
11663652 TATATTTAAT
* *
11663662 TATATGTTTATTTGCATGA
1 TATATATTTAATTGCATGA
* * *
11663681 TTTATATTATTACTTGCAAGAA
1 TATATA-T-TTAATTGCATG-A
* * *
11663703 TATATATTTAATTACACGT
1 TATATATTTAATTGCATGA
*
11663722 TTTATATTATTAATTGCATGA
1 TATATA-T-TTAATTGCATGA
11663743 TATATATTTAATTGCATG
1 TATATATTTAATTGCATG
11663761 TCTATTTGCA
Statistics
Matches: 61, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
19 20 0.33
20 11 0.18
21 24 0.39
22 6 0.10
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.49
Consensus pattern (19 bp):
TATATATTTAATTGCATGA
Found at i:11664264 original size:213 final size:213
Alignment explanation
Indices: 11664022--11664458 Score: 858
Period size: 213 Copynumber: 2.1 Consensus size: 213
11664012 GCTGTTATTA
*
11664022 TTGCATGAT-AATTAATATATTTGCATGACATTCTTACATGAATATTTCTAGGCATGATATTATT
1 TTGCATGATAAATCAATATATTTGCATGACATTCTTACATGAATATTTCTAGGCATGATATTATT
11664086 ACATGATATTTAGTATGAATTATAATATATTTGTATGATAATTTTTGCATGGTATGATTTAATAT
66 ACATGATATTTAGTATGAATTATAATATATTTGTATGATAATTTTTGCATGGTATGATTTAATAT
11664151 TTATTGCATAATTACTTGATATTTGATAGAGCTTTTGTATCACCATGTTTTATAAATAAATAAAA
131 TTATTGCATAATTACTTGATATTTGATAGAGCTTTTGTATCACCATGTTTTATAAATAAATAAAA
11664216 GGATTGGAATTGATTTAT
196 GGATTGGAATTGATTTAT
11664234 TTGCATGATAAATCAATATATTTGCATGACATTCTTACATGAATATTTCTAGGCATGATATTATT
1 TTGCATGATAAATCAATATATTTGCATGACATTCTTACATGAATATTTCTAGGCATGATATTATT
11664299 ACATGATATTTAGTATGAATTATAATATATTTGTATGATAATTTTTGCATGGTATGATTTAATAT
66 ACATGATATTTAGTATGAATTATAATATATTTGTATGATAATTTTTGCATGGTATGATTTAATAT
11664364 TTATTGCATAATTACTTGATATTTGATAGAGCTTTTGTATCACCATGTTTTATAAATAAATAAAA
131 TTATTGCATAATTACTTGATATTTGATAGAGCTTTTGTATCACCATGTTTTATAAATAAATAAAA
11664429 GGATTGGAATTGATTTAT
196 GGATTGGAATTGATTTAT
11664447 TTGCATGATAAA
1 TTGCATGATAAA
11664459 ATTATCTTTG
Statistics
Matches: 223, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
212 9 0.04
213 214 0.96
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.44
Consensus pattern (213 bp):
TTGCATGATAAATCAATATATTTGCATGACATTCTTACATGAATATTTCTAGGCATGATATTATT
ACATGATATTTAGTATGAATTATAATATATTTGTATGATAATTTTTGCATGGTATGATTTAATAT
TTATTGCATAATTACTTGATATTTGATAGAGCTTTTGTATCACCATGTTTTATAAATAAATAAAA
GGATTGGAATTGATTTAT
Found at i:11666049 original size:36 final size:36
Alignment explanation
Indices: 11665995--11666069 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
11665985 ATAAAAATGC
*
11665995 TTCTAAACTATTAAATCTGAGGTTGAAGCCCAAACT
1 TTCTAAACCATTAAATCTGAGGTTGAAGCCCAAACT
*
11666031 TTCTAAACCATTAGATCTGAGGTTGAAGCCCAAACT
1 TTCTAAACCATTAAATCTGAGGTTGAAGCCCAAACT
11666067 TTC
1 TTC
11666070 AAGTCGTCAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (36 bp):
TTCTAAACCATTAAATCTGAGGTTGAAGCCCAAACT
Found at i:11667366 original size:14 final size:14
Alignment explanation
Indices: 11667343--11667381 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
11667333 TAAAGAAAAT
*
11667343 AAAAACAAAATAAC
1 AAAAATAAAATAAC
*
11667357 AAAAATAAAATAAT
1 AAAAATAAAATAAC
11667371 AAAAATAAAAT
1 AAAAATAAAAT
11667382 TAGATTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAAATAAAATAAC
Found at i:11672828 original size:27 final size:24
Alignment explanation
Indices: 11672803--11672871 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 24
11672793 AAATGAATAT
*
11672803 TAAAGATATTAAAATTATTTTTAA
1 TAAAAATATTAAAATTATTTTTAA
11672827 TAAAAATTAAATTAAAATTTATTTTTAA
1 TAAAAA-T--ATTAAAA-TTATTTTTAA
11672855 TAAAAAT-TTAAAATTAT
1 TAAAAATATTAAAATTAT
11672872 GAAATATTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
23 4 0.10
24 11 0.28
25 1 0.03
27 8 0.20
28 16 0.40
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (24 bp):
TAAAAATATTAAAATTATTTTTAA
Found at i:11672857 original size:28 final size:27
Alignment explanation
Indices: 11672810--11672862 Score: 97
Period size: 28 Copynumber: 1.9 Consensus size: 27
11672800 TATTAAAGAT
11672810 ATTAAAATTATTTTTAATAAAAATTAA
1 ATTAAAATTATTTTTAATAAAAATTAA
11672837 ATTAAAATTTATTTTTAATAAAAATT
1 ATTAAAA-TTATTTTTAATAAAAATT
11672863 TAAAATTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (27 bp):
ATTAAAATTATTTTTAATAAAAATTAA
Found at i:11675871 original size:23 final size:25
Alignment explanation
Indices: 11675845--11675898 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
11675835 CATATATTAG
11675845 TCAAATATAT-CAAAT-AAGCACAA
1 TCAAATATATGCAAATCAAGCACAA
* *
11675868 TCAAACATATGCATATCAAGCACAA
1 TCAAATATATGCAAATCAAGCACAA
11675893 TCAAAT
1 TCAAAT
11675899 TTGTCCATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 9 0.35
24 4 0.15
25 13 0.50
ACGTcount: A:0.52, C:0.20, G:0.06, T:0.22
Consensus pattern (25 bp):
TCAAATATATGCAAATCAAGCACAA
Found at i:11677927 original size:2 final size:2
Alignment explanation
Indices: 11677920--11677945 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11677910 CAAAGAATCA
11677920 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
11677946 TACTTAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11685596 original size:36 final size:36
Alignment explanation
Indices: 11685356--11685605 Score: 183
Period size: 36 Copynumber: 6.9 Consensus size: 36
11685346 ATTCTATGAA
* * * *
11685356 TTGTTCTCCTATTTTTTAAGAAAA-TATCTTTATTAC
1 TTGTTCTCTTATTTTTTAGGAAAACTCTC-TCATTAC
* * *
11685392 TTATTCTATTA-TTTTTAGGAAAACATCT-TCGTTAC
1 TTGTTCTCTTATTTTTTAGGAAAAC-TCTCTCATTAC
* * * * *
11685427 TTATTTTATCATTTTTTAGGGACAAACT-T-TCATTAT
1 TTGTTCTCTTATTTTTTA-GGA-AAACTCTCTCATTAC
* * * *
11685463 TTATTCTCTTATTTTCTTATGGGAAAC-ATC-AATTAC
1 TTGTTCTCTTATTTT-TTA-GGAAAACTCTCTCATTAC
* * *
11685499 TTGTTCTTTTATTTTTTA-GAAAAATACTTTCATTAC
1 TTGTTCTCTTATTTTTTAGGAAAACT-CTCTCATTAC
*
11685535 TTGTTCTCTTATTTTTTTAGGAAAACTCTCACATTAC
1 TTGTTCTCTTA-TTTTTTAGGAAAACTCTCTCATTAC
*
11685572 TTGTTCTCTTATTTTTTAGGAAAACACTCTCATT
1 TTGTTCTCTTATTTTTTAGGAAAACTCTCTCATT
11685606 GTTTTTTTTT
Statistics
Matches: 170, Mismatches: 31, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
33 4 0.02
35 29 0.17
36 90 0.53
37 37 0.22
38 10 0.06
ACGTcount: A:0.27, C:0.15, G:0.08, T:0.51
Consensus pattern (36 bp):
TTGTTCTCTTATTTTTTAGGAAAACTCTCTCATTAC
Found at i:11685657 original size:36 final size:36
Alignment explanation
Indices: 11685356--11685676 Score: 175
Period size: 36 Copynumber: 8.9 Consensus size: 36
11685346 ATTCTATGAA
*
11685356 TTGTTCTCCTATTTTTTA-AGAAAATATCTTT-ATTAC
1 TTGTTCTCTTATTTTTTAGA-AAAATA-CTTTCATTAC
* * *
11685392 TTATTCTATTA-TTTTTAGGAAAACAT-C-TTCGTTAC
1 TTGTTCTCTTATTTTTTA-GAAAA-ATACTTTCATTAC
* * * * * * *
11685427 TTATTTTATCATTTTTTAGGGACAA-ACTTTCATTAT
1 TTGTTCTCTTATTTTTTA-GAAAAATACTTTCATTAC
* ** *
11685463 TTATTCTCTTATTTTCTTATG-GGAA-AC-ATCAATTAC
1 TTGTTCTCTTATTTT-TTA-GAAAAATACTTTC-ATTAC
*
11685499 TTGTTCTTTTATTTTTTAGAAAAATACTTTCATTAC
1 TTGTTCTCTTATTTTTTAGAAAAATACTTTCATTAC
* **
11685535 TTGTTCTCTTATTTTTTTAGGAAAACT-CTCACATTAC
1 TTGTTCTCTTA-TTTTTTA-GAAAAATACTTTCATTAC
* * * *
11685572 TTGTTCTCTTATTTTTTAGGAAAACACTCTCATT-G
1 TTGTTCTCTTATTTTTTAGAAAAATACTTTCATTAC
* * * *
11685607 TT-TTTTTTTTTTTTTTCA-AAAAATA-TTTATATTAC
1 TTGTTCTCTTATTTTTT-AGAAAAATACTTT-CATTAC
*
11685642 TTGTTCTCTTATTTTTTCAGAAAAACACTTTCATT
1 TTGTTCTCTTATTTTTT-AGAAAAATACTTTCATT
11685677 TTTTGTTTTT
Statistics
Matches: 219, Mismatches: 45, Indels: 41
0.72 0.15 0.13
Matches are distributed among these distances:
33 2 0.01
34 22 0.10
35 38 0.17
36 104 0.47
37 44 0.20
38 9 0.04
ACGTcount: A:0.27, C:0.14, G:0.07, T:0.52
Consensus pattern (36 bp):
TTGTTCTCTTATTTTTTAGAAAAATACTTTCATTAC
Found at i:11685683 original size:37 final size:36
Alignment explanation
Indices: 11685498--11685696 Score: 151
Period size: 37 Copynumber: 5.5 Consensus size: 36
11685488 ACATCAATTA
* * *
11685498 CTTGTTCTTTTATTTTTTAGAAAAATACTTTCATTA
1 CTTGTTCTCTTATTTTTTAGAAAAACACTTTCATTT
* * ** *
11685534 CTTGTTCTCTTATTTTTTTAGGAAAACTCTCACATTA
1 CTTGTTCTCTTA-TTTTTTAGAAAAACACTTTCATTT
* *
11685571 CTTGTTCTCTTATTTTTTAGGAAAACACTCTCATTGT
1 CTTGTTCTCTTATTTTTTAGAAAAACACTTTCATT-T
* * *
11685608 -TT-TT-TTTTTTTTTTTCA-AAAAATA-TTT-ATATT
1 CTTGTTCTCTTATTTTTT-AGAAAAACACTTTCAT-TT
11685640 ACTTGTTCTCTTATTTTTTCAGAAAAACACTTTCATTT
1 -CTTGTTCTCTTATTTTTT-AGAAAAACACTTTCATTT
* *
11685678 TTTGTT-TTTCTATTTTTTA
1 CTTGTTCTCT-TATTTTTTA
11685697 AGGAAATACT
Statistics
Matches: 132, Mismatches: 19, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
32 3 0.02
33 3 0.02
34 16 0.12
35 5 0.04
36 48 0.36
37 50 0.38
38 5 0.04
39 2 0.02
ACGTcount: A:0.24, C:0.14, G:0.06, T:0.56
Consensus pattern (36 bp):
CTTGTTCTCTTATTTTTTAGAAAAACACTTTCATTT
Found at i:11685683 original size:107 final size:107
Alignment explanation
Indices: 11685452--11685702 Score: 260
Period size: 107 Copynumber: 2.3 Consensus size: 107
11685442 TTAGGGACAA
* *
11685452 ACTTTCATTATTTATTCTCTTATTTTCTTATGGGAAACATCAATTACTTGTTCTTTTATTTTTTA
1 ACTTTCATTATTTGTTCTCTTATTTT-TTA-GGAAAACATCAATTACTTGTTCTTTTATTTTTTA
* *
11685517 GAAAAATACTTTCATTACTTGTTCTCTTATTTTTTTAGGAAAAC
64 GAAAAATACTTTCATTACTTGTTCTCTTATTTTTTCAGAAAAAC
* ** * * * * *
11685561 TCTCACATTACTTGTTCTCTTATTTTTTAGGAAAACACTCTCATT-GTT-TTTTTTTTTTTTTTC
1 ACTTTCATTATTTGTTCTCTTATTTTTTAGGAAAACA-TC-AATTACTTGTTCTTTTATTTTTT-
*
11685624 A-AAAAATA-TTTATATTACTTGTTCTCTTATTTTTTCAGAAAAAC
63 AGAAAAATACTTT-CATTACTTGTTCTCTTATTTTTTCAGAAAAAC
* *
11685668 ACTTTCATTTTTTGTT-TTTCTATTTTTTAAGGAAA
1 ACTTTCATTATTTGTTCTCT-TATTTTTT-AGGAAA
11685703 TACTCCATTA
Statistics
Matches: 117, Mismatches: 19, Indels: 13
0.79 0.13 0.09
Matches are distributed among these distances:
106 5 0.04
107 74 0.63
108 14 0.12
109 24 0.21
ACGTcount: A:0.26, C:0.14, G:0.07, T:0.54
Consensus pattern (107 bp):
ACTTTCATTATTTGTTCTCTTATTTTTTAGGAAAACATCAATTACTTGTTCTTTTATTTTTTAGA
AAAATACTTTCATTACTTGTTCTCTTATTTTTTCAGAAAAAC
Found at i:11685845 original size:101 final size:94
Alignment explanation
Indices: 11685687--11685962 Score: 268
Period size: 101 Copynumber: 2.9 Consensus size: 94
11685677 TTTTGTTTTT
* ** * * *
11685687 CTATTTTTTAAGGAAATACTCCATTACCCAATCCTTTTAATAATTTCTCTATTTTTTAGGGAAAC
1 CTATTTTTTTAGGAAATACTTTATTACCTATTCCTTTTAATAATTTTTCTATTTTTTAGGGAAAC
* *
11685752 ACTCTCTTACTTATTCTTTGTAATAATTTTC
66 ACTCCCTTACCTATTCTTTGTAAT-A-TTTC
* * * *
11685783 CTATTTTTTTAGGAAAATACTCCATTATGTATCTATTCCTTTTAATATTTTTTTTATTTTTTAGA
1 CTATTTTTTTAGG-AAATACT---TTAT-TACCTATTCCTTTTAATAATTTTTCTATTTTTTAGG
** * *
11685848 GAAATGCTCCCTTACCTATTTTTTTTAATATTTC
61 GAAACACTCCCTTACCTATTCTTTGTAATATTTC
* * * * *
11685882 TTTTTTTTTTAGGAAATACTTTCTTACCTATTCTTTTTAATAATTTTTCTATTTTTTA-GGTAAC
1 CTATTTTTTTAGGAAATACTTTATTACCTATTCCTTTTAATAATTTTTCTATTTTTTAGGGAAAC
11685946 A-TACCCATTACCTATTC
66 ACT-CCC-TTACCTATTC
11685963 CCTTTAATTG
Statistics
Matches: 145, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
92 1 0.01
93 6 0.04
94 39 0.27
95 3 0.02
96 12 0.08
97 7 0.05
98 7 0.05
99 15 0.10
100 3 0.02
101 52 0.36
ACGTcount: A:0.26, C:0.16, G:0.06, T:0.52
Consensus pattern (94 bp):
CTATTTTTTTAGGAAATACTTTATTACCTATTCCTTTTAATAATTTTTCTATTTTTTAGGGAAAC
ACTCCCTTACCTATTCTTTGTAATATTTC
Found at i:11685969 original size:48 final size:47
Alignment explanation
Indices: 11685682--11685970 Score: 248
Period size: 48 Copynumber: 6.0 Consensus size: 47
11685672 TCATTTTTTG
* *
11685682 TTTTTCTATTTTTTAAGGAAATACTCCATTACCCAATCCTTTTAATAA
1 TTTTTCTATTTTTT-AGGAAATACTCCATTACCTATTCCTTTTAATAA
* * *
11685730 TTTCTCTATTTTTTAGGGAAACACTCTC-TTACTTATT-CTTTGTAATAA
1 TTTTTCTATTTTTTA-GGAAATACTC-CATTACCTATTCCTTT-TAATAA
* * *
11685778 TTTTCCTATTTTTTTAGGAAAATACTCCATTATGTATCTATTCCTTTTAATAT
1 TTTTTCTA-TTTTTTAGG-AAATACTCC---AT-TACCTATTCCTTTTAATAA
* * * **
11685831 TTTTTTTATTTTTTAGAGAAATGCTCCCTTACCTATTTTTTTTAAT-A
1 TTTTTCTATTTTTTAG-GAAATACTCCATTACCTATTCCTTTTAATAA
* * *
11685878 TTTCTT-TTTTTTTTAGGAAATACTTTC-TTACCTATTCTTTTTAATAA
1 TTT-TTCTATTTTTTAGGAAATAC-TCCATTACCTATTCCTTTTAATAA
*
11685925 TTTTTCTATTTTTTAGGTAACATAC-CCATTACCTATTCCCTTTAAT
1 TTTTTCTATTTTTTAGG-AA-ATACTCCATTACCTATTCCTTTTAAT
11685971 TGCTTCTTTT
Statistics
Matches: 195, Mismatches: 27, Indels: 38
0.75 0.10 0.15
Matches are distributed among these distances:
46 25 0.13
47 34 0.17
48 77 0.39
49 20 0.10
52 17 0.09
53 18 0.09
54 4 0.02
ACGTcount: A:0.26, C:0.16, G:0.06, T:0.53
Consensus pattern (47 bp):
TTTTTCTATTTTTTAGGAAATACTCCATTACCTATTCCTTTTAATAA
Found at i:11685969 original size:94 final size:94
Alignment explanation
Indices: 11685690--11685986 Score: 228
Period size: 94 Copynumber: 3.1 Consensus size: 94
11685680 TGTTTTTCTA
* * * * * * *
11685690 TTTTTTAAGGAAATAC-TCCATTACCCAATCCTTTTAATAATTTCTCTATTTTTTAGGGAAACAC
1 TTTTTTTAGGAAATACTTTC-TTACCTATTCCTTTTAATAATTTTTCTATTTTTTAGAGAAATAC
* * * * *
11685754 TCTC-TTACTTATT-CTTTGTAATAATTTTCCTA
65 TC-CATTACCTATTCCCTT-TAAT--TCTTCTTT
* * * *
11685786 TTTTTTTAGGAAAATACTCCATTATGTATCTATTCCTTTTAATATTTTTTTTATTTTTTAGAGAA
1 TTTTTTTAGG-AAATACT---TTCT-TACCTATTCCTTTTAATAATTTTTCTATTTTTTAGAGAA
* * ***
11685851 ATGCTCCCTTACCTATTTTTTTTAATAT-TTCTTT
61 ATACTCCATTACCTATTCCCTTTAAT-TCTTCTTT
*
11685885 TTTTTTTAGGAAATACTTTCTTACCTATTCTTTTTAATAATTTTTCTATTTTTTAG-GTAACATA
1 TTTTTTTAGGAAATACTTTCTTACCTATTCCTTTTAATAATTTTTCTATTTTTTAGAG-AA-ATA
11685949 C-CCATTACCTATTCCCTTTAATTGCTTCTTT
64 CTCCATTACCTATTCCCTTTAATT-CTTCTTT
11685980 TTTTTTT
1 TTTTTTT
11685987 GACAAAAACT
Statistics
Matches: 163, Mismatches: 26, Indels: 25
0.76 0.12 0.12
Matches are distributed among these distances:
93 2 0.01
94 50 0.31
95 19 0.12
96 9 0.06
97 6 0.04
98 7 0.04
99 14 0.09
100 4 0.02
101 49 0.30
102 3 0.02
ACGTcount: A:0.25, C:0.16, G:0.06, T:0.54
Consensus pattern (94 bp):
TTTTTTTAGGAAATACTTTCTTACCTATTCCTTTTAATAATTTTTCTATTTTTTAGAGAAATACT
CCATTACCTATTCCCTTTAATTCTTCTTT
Found at i:11687272 original size:321 final size:322
Alignment explanation
Indices: 11686685--11687320 Score: 1166
Period size: 321 Copynumber: 2.0 Consensus size: 322
11686675 AGAACAAGAC
*
11686685 TAACACCTTTACTAAAAATTTTTGAAACACAAGTTGTTTCACTAAAAGTTATTTCACAAAAGGCA
1 TAACACCTTTACTAAAAATTTTTGAAACACAAGTTGTTTCACTAAAAGTTATTTCACAAAAGACA
*
11686750 TTTCATCGAATGTTACTTTACCAAAAGAAAAAGTGAAAATAACCCCAAAATATGACAGGATTTTT
66 CTTCATCGAATGTTACTTTACCAAAAGAAAAAGTGAAAATAACCCCAAAATATGACAGGATTTTT
*
11686815 GGGTTAATTCTACTATTGAGATGTTTTAAAGAGCTTGGCTTGGTAAATTAGATATGGAGATAGTT
131 GGGTTAATTCTACTATTGAGATGTTCTAAAGAGCTTGGCTTGGTAAATTAGATATGGAGATAGTT
* *
11686880 AAGAGGTTTTCTCTTAATCTTTGCCTAAAATATGAGTGTTTTTCCCTTTCTTTTAGAACAAATAG
196 AAGAGGTTTTCTCTAAACCTTTGCCTAAAATATGAGTGTTTTTCCCTTTCTTTTAGAACAAATAG
*
11686945 TGAACTTCTATATTCACTATACTTACTAGCAAAAAGCTTATTAAACTTTCATTAATATGGAA
261 TGAACTTCTATATTCACTATACTTACTAGCAAAAAGCTTATTAAACTCTCATTAATATGGAA
11687007 TAAC-CCTTTACTAAAAATTTTTGAAACACAAGTTGTTTCACTAAAAGTTATTTCACAAAAGACA
1 TAACACCTTTACTAAAAATTTTTGAAACACAAGTTGTTTCACTAAAAGTTATTTCACAAAAGACA
* * *
11687071 CTTCATCGAATGTTACTTTACCAAAAGAAGAAGTGAAAATAACTCCAAAATATGATAGGATTTTT
66 CTTCATCGAATGTTACTTTACCAAAAGAAAAAGTGAAAATAACCCCAAAATATGACAGGATTTTT
*
11687136 GGGTTAATTCTACTATTGGGATGTTCTAAAGAGCTTGGCTTGGTAAATTAGATATGGAGATAGTT
131 GGGTTAATTCTACTATTGAGATGTTCTAAAGAGCTTGGCTTGGTAAATTAGATATGGAGATAGTT
11687201 AAGAGGTTTTCTCTAAACCTTTGCCTAAAATATGAGTGTTTTTCCCTTTCTTTTAGAACAAATAG
196 AAGAGGTTTTCTCTAAACCTTTGCCTAAAATATGAGTGTTTTTCCCTTTCTTTTAGAACAAATAG
*
11687266 TGAACTTCTATATTCACTATACTTATTAGCAAAAAGCTTATTAAACTCTCATTAA
261 TGAACTTCTATATTCACTATACTTACTAGCAAAAAGCTTATTAAACTCTCATTAA
11687321 ACAATACATT
Statistics
Matches: 303, Mismatches: 11, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
321 299 0.99
322 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (322 bp):
TAACACCTTTACTAAAAATTTTTGAAACACAAGTTGTTTCACTAAAAGTTATTTCACAAAAGACA
CTTCATCGAATGTTACTTTACCAAAAGAAAAAGTGAAAATAACCCCAAAATATGACAGGATTTTT
GGGTTAATTCTACTATTGAGATGTTCTAAAGAGCTTGGCTTGGTAAATTAGATATGGAGATAGTT
AAGAGGTTTTCTCTAAACCTTTGCCTAAAATATGAGTGTTTTTCCCTTTCTTTTAGAACAAATAG
TGAACTTCTATATTCACTATACTTACTAGCAAAAAGCTTATTAAACTCTCATTAATATGGAA
Found at i:11689092 original size:2 final size:2
Alignment explanation
Indices: 11689085--11689118 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
11689075 GAATCACATA
*
11689085 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11689119 TCAATCCTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11695699 original size:136 final size:134
Alignment explanation
Indices: 11695517--11695782 Score: 390
Period size: 136 Copynumber: 2.0 Consensus size: 134
11695507 TTAATTAATA
* * * *
11695517 AAAATTTATTTTTTATTTAAATGTCCAACAAGGTCATTTTGGTACATACAAAAATATCATTTCTG
1 AAAATTTATTTTTTATTTAAATGTCCAACAAGGCCATTCTGATACATACAAAAATACCATTTCTG
* * *
11695582 TCCTGAAAGATTAATGCTATTCT-ATAGCATCAAAATGGATATGAGTGTATCATTGTTCTAAACA
66 TCCTGAAAGATTAATACTATTCTGATAGCACCAAAATGAATATGA--GTATCATTGTTCTAAACA
11695646 CTATCG
129 CTATCG
*
11695652 AAAATTTATTTTGTTATTTAAATGTCCAACAAGGCCATTCTGATACATACAAGAATACCATTTCT
1 AAAATTTATTTT-TTATTTAAATGTCCAACAAGGCCATTCTGATACATACAAAAATACCATTTCT
** * *
11695717 GTTGTGAAAGATTAATATTATTCTGATAGCACCAAAGTGAATATGAGTATCATTGTTCTAAACAC
65 GTCCTGAAAGATTAATACTATTCTGATAGCACCAAAATGAATATGAGTATCATTGTTCTAAACAC
11695782 T
130 T
11695783 GTTGAGGAAA
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
135 32 0.27
136 67 0.57
137 18 0.15
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (134 bp):
AAAATTTATTTTTTATTTAAATGTCCAACAAGGCCATTCTGATACATACAAAAATACCATTTCTG
TCCTGAAAGATTAATACTATTCTGATAGCACCAAAATGAATATGAGTATCATTGTTCTAAACACT
ATCG
Done.