Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 66 of 125
Found at i:13085316 original size:57 final size:55
Alignment explanation
Indices: 13085121--13085332 Score: 232
Period size: 57 Copynumber: 3.7 Consensus size: 55
13085111 AAAATTCCAA
* *
13085121 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAATTTCCTTGGAAATAAGCTTTCT
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC-TCGAAATAAG-TTTCT
* * **
13085178 AAAAAATTATTTTT-AGGGAAAAGTTGAAAGTACCAATTTTTCTTAAAAATAAGTTT-T
1 -AAAAA-TATTTTTGA-GGAAAAGTTGAAAGTATCAA-TTTTCCTCGAAATAAGTTTCT
13085235 CAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCT
1 -AAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAA-T-AAGTTTCT
*
13085295 AAATAATA-TTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
13085333 TTCTGTACAA
Statistics
Matches: 133, Mismatches: 11, Indels: 21
0.81 0.07 0.13
Matches are distributed among these distances:
56 1 0.01
57 44 0.33
58 36 0.27
59 44 0.33
60 8 0.06
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (55 bp):
AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATAAGTTTCT
Found at i:13088506 original size:15 final size:15
Alignment explanation
Indices: 13088486--13088521 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
13088476 TTCGCATACA
*
13088486 TGCATTCTCATTCAT
1 TGCATTCTCACTCAT
13088501 TGCATTCTCACTCAT
1 TGCATTCTCACTCAT
*
13088516 TACATT
1 TGCATT
13088522 TAACAAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.22, C:0.28, G:0.06, T:0.44
Consensus pattern (15 bp):
TGCATTCTCACTCAT
Found at i:13095187 original size:14 final size:15
Alignment explanation
Indices: 13095154--13095188 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
13095144 CTTCTATCCT
13095154 TTTTTATAACATTAA
1 TTTTTATAACATTAA
*
13095169 TTTTTCTAACATTAA
1 TTTTTATAACATTAA
13095184 TTTTT
1 TTTTT
13095189 TTTCTAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTTTATAACATTAA
Found at i:13096180 original size:23 final size:23
Alignment explanation
Indices: 13096148--13096195 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
13096138 ATATTTAACA
* * *
13096148 AATAATAAATTACTCAATAAAAT
1 AATAAAAAATCACTAAATAAAAT
*
13096171 AATAAAAAATCAGTAAATAAAAT
1 AATAAAAAATCACTAAATAAAAT
13096194 AA
1 AA
13096196 ATGAAAGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.25
Consensus pattern (23 bp):
AATAAAAAATCACTAAATAAAAT
Found at i:13096234 original size:15 final size:14
Alignment explanation
Indices: 13096212--13096255 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
13096202 GTAAATTGAA
13096212 AATAAAATAAAAAT
1 AATAAAATAAAAAT
*
13096226 ACTTAAAATATAAAAT
1 A-ATAAAATA-AAAAT
*
13096242 AATAAAATTAAAAT
1 AATAAAATAAAAAT
13096256 TAAATTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 6 0.24
15 13 0.52
16 6 0.24
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (14 bp):
AATAAAATAAAAAT
Found at i:13096603 original size:11 final size:11
Alignment explanation
Indices: 13096587--13096634 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
13096577 CTCAAAACCC
13096587 AAAATTTTCCA
1 AAAATTTTCCA
13096598 AAAATTTT-CA
1 AAAATTTTCCA
* *
13096608 AAAA--ATCCC
1 AAAATTTTCCA
13096617 AAAATTTTCCA
1 AAAATTTTCCA
13096628 AAAATTT
1 AAAATTT
13096635 AAACTTCAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
8 1 0.03
9 5 0.17
10 6 0.20
11 18 0.60
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTTTCCA
Found at i:13097114 original size:3 final size:3
Alignment explanation
Indices: 13097106--13097160 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
13097096 AAGGAAATAA
13097106 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT
13097154 AGT AGT A
1 AGT AGT A
13097161 ATAATAATAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
AGT
Found at i:13097165 original size:3 final size:3
Alignment explanation
Indices: 13097159--13097269 Score: 74
Period size: 3 Copynumber: 38.0 Consensus size: 3
13097149 GTAGTAGTAG
* * *
13097159 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -CA TAG T-A TAA -GA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
13097204 T-A TAA T-A TAA TAC TAG TAA TAA TAAA TAA TAA CAAA TAA TAA TACA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA -TAA TAA TAA TA-A
*
13097250 -AA -AA TTAG TAA TAA TAA TAA
1 TAA TAA -TAA TAA TAA TAA TAA
13097270 AAATCAACCT
Statistics
Matches: 85, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
2 10 0.12
3 68 0.80
4 7 0.08
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:13097955 original size:85 final size:85
Alignment explanation
Indices: 13097754--13097975 Score: 257
Period size: 85 Copynumber: 2.6 Consensus size: 85
13097744 AAAGATTTTT
* * *** * * * *
13097754 AGATTCGCAAGATTCCAAGTTTTATGGAGGTTCTAGATTCGCAGAGGTTTCAGGTTCACAAAGAC
1 AGATTCACAAGATTCCAAGTTTCACAAAAGTTCTAAATTCACAAAGGTTTCAGGTTCACAAAGAC
13097819 TTTTGATTTGCAAAAATGGA
66 TTTTGATTTGCAAAAATGGA
** *
13097839 AGATTCACAAGATTCCAAGTTTTGCAAAAGTTTTAAATTCACAAAGGTTTCAGGTTCACAAAGAC
1 AGATTCACAAGATTCCAAGTTTCACAAAAGTTCTAAATTCACAAAGGTTTCAGGTTCACAAAGAC
*
13097904 TTTTAGATTTGCAAGAATGGA
66 TTTT-GATTTGCAAAAATGGA
* * ** * *
13097925 AGATTCATAAGATTCTAA-TTTCACTGAAGTTCTAGATTCGCAAAGGTTTCA
1 AGATTCACAAGATTCCAAGTTTCACAAAAGTTCTAAATTCACAAAGGTTTCA
13097976 TAACAAAATT
Statistics
Matches: 116, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
85 85 0.73
86 31 0.27
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.32
Consensus pattern (85 bp):
AGATTCACAAGATTCCAAGTTTCACAAAAGTTCTAAATTCACAAAGGTTTCAGGTTCACAAAGAC
TTTTGATTTGCAAAAATGGA
Found at i:13099136 original size:17 final size:17
Alignment explanation
Indices: 13099099--13099137 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
13099089 AAGTTTCCCT
13099099 TTTTTCTCTTTTTTTTG
1 TTTTTCTCTTTTTTTTG
13099116 -TTTTCT-TGTTTTTTTG
1 TTTTTCTCT-TTTTTTTG
13099132 TTTTTC
1 TTTTTC
13099138 ATTTATCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.05
16 14 0.70
17 5 0.25
ACGTcount: A:0.00, C:0.10, G:0.08, T:0.82
Consensus pattern (17 bp):
TTTTTCTCTTTTTTTTG
Found at i:13101081 original size:16 final size:16
Alignment explanation
Indices: 13101046--13101083 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
13101036 AAAAAATATA
*
13101046 ATAAAAAAATAAAATT
1 ATAAAAAAATAAAATC
13101062 ATAAAAAATATAAAA-C
1 ATAAAAAA-ATAAAATC
13101078 ATAAAA
1 ATAAAA
13101084 TTATAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (16 bp):
ATAAAAAAATAAAATC
Found at i:13101081 original size:24 final size:23
Alignment explanation
Indices: 13101045--13101092 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
13101035 CAAAAAATAT
13101045 AATAAAAAAATAAAATTATAAAA
1 AATAAAAAAATAAAATTATAAAA
*
13101068 AATATAAAACATAAAATTATAAAA
1 AATA-AAAAAATAAAATTATAAAA
13101092 A
1 A
13101093 TTTTGGAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (23 bp):
AATAAAAAAATAAAATTATAAAA
Found at i:13101572 original size:109 final size:110
Alignment explanation
Indices: 13101433--13101655 Score: 299
Period size: 109 Copynumber: 2.0 Consensus size: 110
13101423 TTTCCAAAAT
* * * * *
13101433 AAAAGAAAAAAAAAGAATTTTTGAACAAGCCCAAATGGT-GAAAAATTTAGAAATTCTGAAAAA-
1 AAAAGAAAAAAAAAGAAATTCTAAACAAGCCCAAATGGTAG-AAAACTTAGAAATTC-AAAAAAG
* * * *
13101496 AGAAAATATTTCTATATTGACCAAAAT-GTGGAACATTTATAAATAA
64 AGAAAATATTTCTAAATTGACCAAAATGGAGGAAAATTTAAAAATAA
* *
13101542 AAAATAAAAAAAAAGAAATTCTAAATAAGCCCAAATGGTAGAAAACTTAGAAATTCAAAAAAGAG
1 AAAAGAAAAAAAAAGAAATTCTAAACAAGCCCAAATGGTAGAAAACTTAGAAATTCAAAAAAGAG
*
13101607 AAAATATTTCTAAATTGACCCAAATGGAGGAAAATTTAAAAATAA
66 AAAATATTTCTAAATTGACCAAAATGGAGGAAAATTTAAAAATAA
13101652 AAAA
1 AAAA
13101656 AATTTCAAAA
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
108 5 0.05
109 73 0.74
110 21 0.21
ACGTcount: A:0.57, C:0.09, G:0.12, T:0.23
Consensus pattern (110 bp):
AAAAGAAAAAAAAAGAAATTCTAAACAAGCCCAAATGGTAGAAAACTTAGAAATTCAAAAAAGAG
AAAATATTTCTAAATTGACCAAAATGGAGGAAAATTTAAAAATAA
Found at i:13101629 original size:54 final size:52
Alignment explanation
Indices: 13101462--13101657 Score: 146
Period size: 54 Copynumber: 3.6 Consensus size: 52
13101452 TTTGAACAAG
* *
13101462 CCCAAATGGTGAAAAATTTAGAAATTCTGAAAAAAGAAAATATTTCTATATTGA
1 CCCAAATGGTG-AAAATTTAGAAATTC-AAAAAAAGAAAATATTTCTAAATTGA
* * * ** * * * *
13101516 CCAAAAT-GTGGAACATTTATAAATAAAAAATAAAAAAAAAGAAATTCTAAA-TAA
1 CCCAAATGGT-GAAAATTTAGAAAT-TCAAA-AAAAGAAAA-TATTTCTAAATTGA
*
13101570 GCCCAAATGGTAGAAAACTTAGAAATTCAAAAAAGAGAAAATATTTCTAAATTGA
1 -CCCAAATGGT-GAAAATTTAGAAATTCAAAAAA-AGAAAATATTTCTAAATTGA
* * *
13101625 CCCAAATGGAGGAAAATTTA-AAAATAAAAAAAA
1 CCCAAATGG-TGAAAATTTAGAAATTCAAAAAAA
13101658 TTTCAAAAGA
Statistics
Matches: 107, Mismatches: 26, Indels: 20
0.70 0.17 0.13
Matches are distributed among these distances:
52 1 0.01
53 25 0.23
54 45 0.42
55 23 0.21
56 13 0.12
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.23
Consensus pattern (52 bp):
CCCAAATGGTGAAAATTTAGAAATTCAAAAAAAGAAAATATTTCTAAATTGA
Found at i:13105661 original size:14 final size:14
Alignment explanation
Indices: 13105636--13105674 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
13105626 CAAAAATACT
13105636 TAAAATATAAAATAA
1 TAAAA-ATAAAATAA
*
13105651 TAAAAATAAAATCA
1 TAAAAATAAAATAA
13105665 -AAAAATAAAA
1 TAAAAATAAAA
13105675 ATAAAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.43
14 8 0.35
15 5 0.22
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAAAATAAAATAA
Found at i:13105671 original size:19 final size:19
Alignment explanation
Indices: 13105644--13105687 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
13105634 CTTAAAATAT
13105644 AAAATAATAAAAATAAAATC
1 AAAA-AATAAAAATAAAATC
13105664 AAAAAATAAAAATAAAATC
1 AAAAAATAAAAATAAAATC
13105683 AAAAA
1 AAAAA
13105688 GGGAAAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.16
Consensus pattern (19 bp):
AAAAAATAAAAATAAAATC
Found at i:13106536 original size:3 final size:3
Alignment explanation
Indices: 13106528--13106552 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
13106518 AAGGAAATAA
13106528 AGT AGT AGT AGT AGT AGT AGT AGT A
1 AGT AGT AGT AGT AGT AGT AGT AGT A
13106553 ATAATAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
AGT
Found at i:13106557 original size:3 final size:3
Alignment explanation
Indices: 13106551--13106741 Score: 156
Period size: 3 Copynumber: 68.0 Consensus size: 3
13106541 GTAGTAGTAG
*
13106551 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
13106598 TAG TAG TAA CAA TAA T-A TAA TAA TAG T-A TAA T-A TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
13106643 TAA CAA TAA CAA CAA T-A TAG T-A TAA T-A TAA T-A TAA T-A TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
13106686 CAG TAA TAA TAA -AA TAA TAA CAA TAA TAA TAA -CA TAA -AA -AA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13106730 TAA TAA TAA TAA
1 TAA TAA TAA TAA
13106742 AAATCGATCC
Statistics
Matches: 154, Mismatches: 22, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
2 23 0.15
3 131 0.85
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:13106619 original size:5 final size:5
Alignment explanation
Indices: 13106609--13106684 Score: 62
Period size: 5 Copynumber: 14.2 Consensus size: 5
13106599 AGTAGTAACA
* * * *
13106609 ATAAT ATAAT AATAGT ATAAT ATAAT AATAAT AATAACA ATAACA ACAAT
1 ATAAT ATAAT -ATAAT ATAAT ATAAT -ATAAT -ATAA-T ATAA-T ATAAT
*
13106659 ATAGT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT A
13106685 GCAGTAATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
5 37 0.62
6 23 0.38
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.33
Consensus pattern (5 bp):
ATAAT
Found at i:13113174 original size:15 final size:14
Alignment explanation
Indices: 13113150--13113179 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
13113140 CCCACAAACA
13113150 TAAAATTAATTTAT
1 TAAAATTAATTTAT
13113164 TAAATATTAATTTAT
1 TAAA-ATTAATTTAT
13113179 T
1 T
13113180 TTATACATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TAAAATTAATTTAT
Found at i:13115024 original size:12 final size:12
Alignment explanation
Indices: 13114990--13115040 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
13114980 AAATTATTTT
13114990 TTAATTATTTAT-
1 TTAATT-TTTATA
13115002 TTAA-TTTTATA
1 TTAATTTTTATA
13115013 TTAATTTTTATA
1 TTAATTTTTATA
*
13115025 -TATATTTATATA
1 TTA-ATTTTTATA
13115037 TTAA
1 TTAA
13115041 AAATAATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
10 5 0.15
11 7 0.21
12 20 0.59
13 2 0.06
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTAATTTTTATA
Found at i:13118616 original size:11 final size:11
Alignment explanation
Indices: 13118575--13118616 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
13118565 CCCAACCCAG
13118575 AAAAA-TCCAA
1 AAAAATTCCAA
*
13118585 AAAAATTCAAA
1 AAAAATTCCAA
13118596 AAACAATTCCAA
1 AAA-AATTCCAA
13118608 AAAAATTCC
1 AAAAATTCC
13118617 CATATGGTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 10 0.36
ACGTcount: A:0.64, C:0.19, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATTCCAA
Found at i:13118673 original size:20 final size:20
Alignment explanation
Indices: 13118648--13118687 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
13118638 CAAACCTTCT
*
13118648 AAAACCCTGAATTCAC-CCC
1 AAAAACCTGAATTCACTCCC
*
13118667 AAAAACCTTAATTCACTCCC
1 AAAAACCTGAATTCACTCCC
13118687 A
1 A
13118688 TAACCCACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.40, C:0.38, G:0.03, T:0.20
Consensus pattern (20 bp):
AAAAACCTGAATTCACTCCC
Found at i:13124516 original size:63 final size:62
Alignment explanation
Indices: 13124403--13124542 Score: 165
Period size: 63 Copynumber: 2.2 Consensus size: 62
13124393 TGACTAGGAT
** * * * *
13124403 GAAACCACAAGTTGAAATAAAATGACCAGGACTGAGTCAAAGTCATGAATAAATGATCGGGA
1 GAAACCACAAGTCAAAACAAAATGACCAAGACTGAGACAAAGTCAAGAATAAATGATCGGGA
* *
13124465 CGAAACCACAAGTCAAAACAAAGTGACCAAGA-TCGAGACAAGGTCAAGAATAAATGATCGGGA
1 -GAAACCACAAGTCAAAACAAAATGACCAAGACT-GAGACAAAGTCAAGAATAAATGATCGGGA
*
13124528 TAGAACCACAAGTCA
1 GA-AACCACAAGTCA
13124543 TAAGAAATGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
62 2 0.03
63 64 0.97
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.14
Consensus pattern (62 bp):
GAAACCACAAGTCAAAACAAAATGACCAAGACTGAGACAAAGTCAAGAATAAATGATCGGGA
Found at i:13127593 original size:21 final size:21
Alignment explanation
Indices: 13127569--13127610 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
13127559 GAATTTTTTG
13127569 CTCAAATAATAAATGACATTT
1 CTCAAATAATAAATGACATTT
13127590 CTCAAATAATAAATGACATTT
1 CTCAAATAATAAATGACATTT
13127611 TCTTTCTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.33
Consensus pattern (21 bp):
CTCAAATAATAAATGACATTT
Found at i:13135121 original size:25 final size:25
Alignment explanation
Indices: 13135091--13135158 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
13135081 TGAATGACAG
* *
13135091 ATATAATAAGCAAATATTCAGGCAA
1 ATATAATAAGCAAATAATAAGGCAA
*
13135116 ATATAAATAA-TAAATAATAAGGCAA
1 ATAT-AATAAGCAAATAATAAGGCAA
*
13135141 AGA-AATAAGC-AATAATAA
1 ATATAATAAGCAAATAATAA
13135159 AAGCAGATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
23 13 0.36
25 18 0.50
26 5 0.14
ACGTcount: A:0.60, C:0.07, G:0.10, T:0.22
Consensus pattern (25 bp):
ATATAATAAGCAAATAATAAGGCAA
Found at i:13135750 original size:5 final size:5
Alignment explanation
Indices: 13135740--13135780 Score: 59
Period size: 5 Copynumber: 8.6 Consensus size: 5
13135730 AATGGGTTAG
*
13135740 AAATA AAATA AAATA AAATA AAAT- TAA-A AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAA
13135781 ATGGAAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:13139586 original size:186 final size:185
Alignment explanation
Indices: 13138845--13140134 Score: 1323
Period size: 186 Copynumber: 6.9 Consensus size: 185
13138835 ATTGAAGACG
* * ** * *
13138845 TTTTTTACTAGAAGACGCCTTTAATAATCCTAACTATTTTTAAACGGGAATTATTAAAGGCATTT
1 TTTTTCACTAGAAGATGCCTTTAATAAT-CTAAAAATTTTTAAA-GGAAATTATTAAAGGCGTTT
* * * * * * * *
13138910 GTTCTCAAAAGATGCCTTTAATAATTATGTAGAAAATTTTAAAGGAACTATTGGAGGTATATTTT
64 GTTCT-AAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTGAAGGCATTTTTT
* * *
13138975 TAGAATAAAC-ACCTTCACTAA-TCGTCTTAAAATTTGAGCACTAGTATATTAAAGGCA
128 TAGAATAAACGACCTTCACTAACT-ATCTTAAAATTTGAGTACTAATATATTAAAGGCA
* * *
13139032 TTTTTCACTAGAAGATACCTTTAATAATCTAAAAAATTTTTAAAATGAAATTATTGAAGG-GTTT
1 TTTTTCACTAGAAGATGCCTTTAATAATCT-AAAAATTTTT-AAAGGAAATTATTAAAGGCG-TT
* * * * * *
13139096 TTTTCTCAAAAAACGCTTTCAATAATTACT-TACATAAA-TTAAATGGAATTAGTGAAGGCAGTT
63 TGTTCT-AAAAAATGCCTTCAATAATTA-TGTACA-AAATTTAAAAGGAATTATTGAAGGCATTT
* * * * * *
13139159 TTCTAGAATAAAC-ACCTTCACTAACCATCTTAAAATTTGAGTAGTGGA-ATATTGAAGGTA
125 TTTTAGAATAAACGACCTTCACTAACTATCTTAAAATTTGAGTACT-AATATATTAAAGGCA
* * *
13139219 TTTTTCATTAGAAGATGCCTTTAATAATCCCAAAAAGTTTTAAAAGGAAATTATTAAAGGCGTTT
1 TTTTTCACTAGAAGATGCCTTTAATAAT-CTAAAAA-TTTTTAAAGGAAATTATTAAAGGCGTTT
* * * * * *
13139284 ATTCTATAAAAAAATACCTTTAATAATTACGTACATAAA-TTAAATGGAATTAGTGAAGGCATTT
64 GTTC--T-AAAAAATGCCTTCAATAATTATGTACA-AAATTTAAAAGGAATTATTGAAGGCATTT
* * * * ** **
13139348 TTTTGGAATAAATG-CCTTCACTAACCATCTTAAAATTTGAATACCGATATATTAAAGGTG
125 TTTTAGAATAAACGACCTTCACTAACTATCTTAAAATTTGAGTACTAATATATTAAAGGCA
* * * * * * *
13139408 TTTTTGACTAGAAGACGCCTTTAATAATCCTAAAAAATTTTAAAGAAAATTATTGAAGGTGTCTG
1 TTTTTCACTAGAAGATGCCTTTAATAAT-CTAAAAATTTTTAAAGGAAATTATTAAAGGCGTTTG
* * * * * *
13139473 TTCTAGAAAAACGTCTTCAATAATTATATACAAAATTTGAAAGGAATTATTAAAGGTATTTTTTT
65 TTCTA-AAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTGAAGGCATTTTTTT
* * * * * **
13139538 GGATTAAACGTCC-TCATTAACTATCTTAAAATTTGAGTACTAATATATTGAAGGTG
129 AGAATAAACGACCTTCACTAACTATCTTAAAATTTGAGTACTAATATATTAAAGGCA
* * *
13139594 TTTTTCA-TTGAAAGATGCATTTAATAATCTCAAAAATTTTTAAAGAAAATTATTAAAGGCGTTT
1 TTTTTCACTAG-AAGATGCCTTTAATAATCT-AAAAATTTTTAAAGGAAATTATTAAAGGCGTTT
* * * *
13139658 GTTCTCACAAAATGCCTTCAATAATTATTTACAAAATTTAAAAAGAATTATTAAAGGCATTCTTT
64 GTTCT-AAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTGAAGGCATT-TTT
* * ** * * **
13139723 TTTGATTAAGTG-CCTTCACTAACCATATTAAAATTTGAGTACTGGTATATTAAAGGCA
127 TTAGAATAAACGACCTTCACTAACTATCTTAAAATTTGAGTACTAATATATTAAAGGCA
* * * *
13139781 TTTTTCACTGGAAGACGCCTTTAATAATCTCAAAATTTTTAAAGGAAATTATTAAAGGCATTTGT
1 TTTTTCACTAGAAGATGCCTTTAATAATCTAAAAATTTTTAAAGGAAATTATTAAAGGCGTTTGT
* * *
13139846 TCTAAAAAAATGCTTTCAATAATTATGTACAAAATTTAAAAAGAATTATTGAAGG-AGTTTTTCT
66 TCT-AAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTGAAGGCA-TTTTTTT
** *
13139910 AGAATAAACG-CCTTCACTAACTGCCTTAAAATTTGAGTACTAGTATATTAAAGGCA
129 AGAATAAACGACCTTCACTAACTATCTTAAAATTTGAGTACTAATATATTAAAGGCA
* *
13139966 TTTTTCACTGGAAGATGCCTTTAATAATCTCAAAAATTTTTAAAGGAAATTATTAAAGGTGTTTG
1 TTTTTCACTAGAAGATGCCTTTAATAATCT-AAAAATTTTTAAAGGAAATTATTAAAGGCGTTTG
* ** *
13140031 TTCTAAAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTAAAGGTGTTTTTCT
65 TTCT-AAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTGAAGGCATTTTTTT
13140096 AGAATAAAAC-ACCTTCACTAACTATCTTAAAATTTGAGT
129 AGAAT-AAACGACCTTCACTAACTATCTTAAAATTTGAGT
13140135 TTGGGTTTAT
Statistics
Matches: 933, Mismatches: 141, Indels: 58
0.82 0.12 0.05
Matches are distributed among these distances:
185 89 0.10
186 376 0.40
187 296 0.32
188 42 0.05
189 130 0.14
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (185 bp):
TTTTTCACTAGAAGATGCCTTTAATAATCTAAAAATTTTTAAAGGAAATTATTAAAGGCGTTTGT
TCTAAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTGAAGGCATTTTTTTAG
AATAAACGACCTTCACTAACTATCTTAAAATTTGAGTACTAATATATTAAAGGCA
Found at i:13139894 original size:372 final size:369
Alignment explanation
Indices: 13138856--13140134 Score: 1474
Period size: 372 Copynumber: 3.4 Consensus size: 369
13138846 TTTTTACTAG
* ** * * *
13138856 AAGACGCCTTTAATAATC-CTAACTATTTTTAAACGGGAATTATTAAAGGCATTTGTTCTCAAAA
1 AAGATGCCTTTAATAATCTC-AAAAATTTTTAAA-GGAAATTATTAAAGGCGTTTGTTCTAAAAA
* * * * * ** * * *
13138920 GATGCCTTTAATAATTATGTAGAAAATTTTAAAGGAACTATTGGAGGTATATTTTTAGAATAAAC
64 AATGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTAAAGGCATTTTTTTAGAATAAAT
* * * * * **
13138985 ACCTTCACTAATCGTCTTAAAATTTGAGCACTAGTATATTAAAGGCATTTTTCACTAGAAGATAC
129 GCCTTCACTAACCATCTTAAAATTTGAGTACTGGTATATTAAAGGCATTTTTCACTAGAAGACGC
* ** * *
13139050 CTTTAATAATCTAAAAAATTTTTAAAATGAAATTATTGAAGGGTTTTTTTCTCAAAAAACGCTTT
194 CTTTAATAATCT-AAAAATTTTT-AAAGGAAATTATTGAAGGCATTTGTTCTAAAAAAACGCTTT
* * * *
13139115 CAATAATTACTTACATAAA-TTAAATGGAATTAGTGAAGGCAGTTTTCTAGAATAAACACCTTCA
257 CAATAATTA-TTACA-AAATTTAAAAGGAATTATTGAAGG-ATTTTTCTAGAATAAACGCCTTCA
* * *
13139179 CTAACCATCTTAAAATTTGAGTAGTGGA-ATATTGAAGGTATTTTTCATT-A
319 CTAACTATCTTAAAATTTGAGTACT-AATATATTGAAGGTATTTTTCATTGA
* * *
13139229 GAAGATGCCTTTAATAATCCCAAAAAGTTTTAAAAGGAAATTATTAAAGGCGTTTATTCTATAAA
1 -AAGATGCCTTTAATAATCTCAAAAA-TTTTTAAAGGAAATTATTAAAGGCGTTTGTTC--TAAA
* * * * * * *
13139294 AAAATACCTTTAATAATTACGTACATAAA-TTAAATGGAATTAGTGAAGGCATTTTTTTGGAATA
62 AAAATGCCTTCAATAATTATGTACA-AAATTTAAAAGGAATTATTAAAGGCATTTTTTTAGAATA
* * * ** *
13139358 AATGCCTTCACTAACCATCTTAAAATTTGAATACCGATATATTAAAGGTGTTTTTGACTAGAAGA
126 AATGCCTTCACTAACCATCTTAAAATTTGAGTACTGGTATATTAAAGGCATTTTTCACTAGAAGA
* * ** * *
13139423 CGCCTTTAATAATCCTAAAAAATTTTAAAGAAAATTATTGAAGGTGTCTGTTCTAGAAAAACG-T
191 CGCCTTTAATAAT-CTAAAAATTTTTAAAGGAAATTATTGAAGGCATTTGTTCTAAAAAAACGCT
* * * * *
13139487 CTTCAATAATTATATACAAAATTTGAAAGGAATTATTAAAGGTATTTTTTTGGATTAAACGTCC-
255 -TTCAATAATTAT-TACAAAATTTAAAAGGAATTATTGAAGG-ATTTTTCTAGAATAAACG-CCT
* *
13139551 TCATTAACTATCTTAAAATTTGAGTACTAATATATTGAAGGTGTTTTTCATTGA
316 TCACTAACTATCTTAAAATTTGAGTACTAATATATTGAAGGTATTTTTCATTGA
* * * *
13139605 AAGATGCATTTAATAATCTCAAAAATTTTTAAAGAAAATTATTAAAGGCGTTTGTTCTCACAAAA
1 AAGATGCCTTTAATAATCTCAAAAATTTTTAAAGGAAATTATTAAAGGCGTTTGTTCTAAAAAAA
* * * * *
13139670 TGCCTTCAATAATTATTTACAAAATTTAAAAAGAATTATTAAAGGCATTCTTTTTTGATTAAGTG
66 TGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTAAAGGCATT-TTTTTAGAATAAATG
* *
13139735 CCTTCACTAACCATATTAAAATTTGAGTACTGGTATATTAAAGGCATTTTTCACTGGAAGACGCC
130 CCTTCACTAACCATCTTAAAATTTGAGTACTGGTATATTAAAGGCATTTTTCACTAGAAGACGCC
* * *
13139800 TTTAATAATCTCAAAATTTTTAAAGGAAATTATTAAAGGCATTTGTTCTAAAAAAATGCTTTCAA
195 TTTAATAATCTAAAAATTTTTAAAGGAAATTATTGAAGGCATTTGTTCTAAAAAAACGCTTTCAA
*
13139865 TAATTATGTACAAAATTTAAAAAGAATTATTGAAGGAGTTTTTCTAGAATAAACGCCTTCACTAA
260 TAATTAT-TACAAAATTTAAAAGGAATTATTGAAGGA-TTTTTCTAGAATAAACGCCTTCACTAA
** * * * * *
13139930 CTGCCTTAAAATTTGAGTACTAGTATATTAAAGGCATTTTTCACTGG
323 CTATCTTAAAATTTGAGTACTAATATATTGAAGGTATTTTTCATTGA
*
13139977 AAGATGCCTTTAATAATCTCAAAAATTTTTAAAGGAAATTATTAAAGGTGTTTGTTCTAAAAAAA
1 AAGATGCCTTTAATAATCTCAAAAATTTTTAAAGGAAATTATTAAAGGCGTTTGTTCTAAAAAAA
** * **
13140042 TGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTAAAGGTGTTTTTCTAGAATAAAACA
66 TGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTAAAGGCATTTTTTTAGAAT-AAATG
*
13140107 CCTTCACTAACTATCTTAAAATTTGAGT
130 CCTTCACTAACCATCTTAAAATTTGAGT
13140135 TTGGGTTTAT
Statistics
Matches: 761, Mismatches: 126, Indels: 38
0.82 0.14 0.04
Matches are distributed among these distances:
371 13 0.02
372 312 0.41
373 79 0.10
374 76 0.10
375 149 0.20
376 127 0.17
377 5 0.01
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (369 bp):
AAGATGCCTTTAATAATCTCAAAAATTTTTAAAGGAAATTATTAAAGGCGTTTGTTCTAAAAAAA
TGCCTTCAATAATTATGTACAAAATTTAAAAGGAATTATTAAAGGCATTTTTTTAGAATAAATGC
CTTCACTAACCATCTTAAAATTTGAGTACTGGTATATTAAAGGCATTTTTCACTAGAAGACGCCT
TTAATAATCTAAAAATTTTTAAAGGAAATTATTGAAGGCATTTGTTCTAAAAAAACGCTTTCAAT
AATTATTACAAAATTTAAAAGGAATTATTGAAGGATTTTTCTAGAATAAACGCCTTCACTAACTA
TCTTAAAATTTGAGTACTAATATATTGAAGGTATTTTTCATTGA
Found at i:13140085 original size:62 final size:62
Alignment explanation
Indices: 13139641--13140096 Score: 177
Period size: 62 Copynumber: 7.4 Consensus size: 62
13139631 TTTTAAAGAA
* * *
13139641 AATTATTAAAGGCGTTTGTTCT-CACAAAATGCCTTCAATAATTATTTACAAAATTTAAAAAG
1 AATTATTAAAGGCGTTT-TTCTACAAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGG
* * ** ** * * ** * * **
13139703 AATTATTAAAGGCATTCTTTTTTGATTAAGTGCCTTCACTAACCATAT-TAAAATTTGAGTACTG
1 AATTATTAAAGGCGTT-TTTCTACAAAAAATGCCTTCAATAATTATGTACAAAATTT-A--AAAG
13139767 G
62 G
* * ** * * * * *
13139768 TA-TATTAAAGGCATTTTTC-ACTGGAAGACGCCTT---TAATAATCT-CAAAATTTTTAAAGG
1 AATTATTAAAGGCGTTTTTCTAC-AAAAAATGCCTTCAATAATTATGTACAAAA-TTTAAAAGG
* * *
13139826 AAATTATTAAAGGCATTTGTTCTA-AAAAAATGCTTTCAATAATTATGTACAAAATTTAAAAAG
1 -AATTATTAAAGGCGTTT-TTCTACAAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGG
* * * * * * * *** * ** **
13139889 AATTATTGAAGGAGTTTTTCTAGAATAAACGCCTTCACTAACTGCCT-TAAAATTTGAGTACT
1 AATTATTAAAGGCGTTTTTCTACAAAAAATGCCTTCAATAATTATGTACAAAATTT-AAAAGG
* * ** * * * * *
13139951 AGTATATTAAAGGCATTTTTC-ACTGGAAGATGCCTTTAATAA-TCT-CA-AAAATTTTTAAAGG
1 AAT-TATTAAAGGCGTTTTTCTAC-AAAAAATGCCTTCAATAATTATGTACAAAA-TTTAAAAGG
*
13140012 AAATTATTAAAGGTGTTTGTTCTA-AAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGG
1 -AATTATTAAAGGCGTTT-TTCTACAAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGG
*
13140075 AATTATTAAAGGTGTTTTTCTA
1 AATTATTAAAGGCGTTTTTCTA
13140097 GAATAAAACA
Statistics
Matches: 280, Mismatches: 87, Indels: 55
0.66 0.21 0.13
Matches are distributed among these distances:
58 3 0.01
59 1 0.00
60 31 0.11
61 54 0.19
62 89 0.32
63 77 0.28
64 22 0.08
65 3 0.01
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.37
Consensus pattern (62 bp):
AATTATTAAAGGCGTTTTTCTACAAAAAATGCCTTCAATAATTATGTACAAAATTTAAAAGG
Found at i:13145338 original size:21 final size:22
Alignment explanation
Indices: 13145313--13145359 Score: 80
Period size: 21 Copynumber: 2.2 Consensus size: 22
13145303 AAATATTACC
13145313 ATTTTACAAA-TTTTTTTTATT
1 ATTTTACAAATTTTTTTTTATT
13145334 ATTTTACAAATTTTTTTTTATT
1 ATTTTACAAATTTTTTTTTATT
13145356 -TTTT
1 ATTTT
13145360 GCAGTTGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (22 bp):
ATTTTACAAATTTTTTTTTATT
Found at i:13147228 original size:21 final size:21
Alignment explanation
Indices: 13147199--13147254 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
13147189 GAAAGAGAAT
* *
13147199 AGAAGTGTGCAAAAATTGAGGA
1 AGAA-TGTGCAAAAATGGAGCA
* *
13147221 AGAATGTGCTAGAATGGAGCA
1 AGAATGTGCAAAAATGGAGCA
13147242 AGAATGTGCAAAA
1 AGAATGTGCAAAA
13147255 TTTCAGTAGT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.45, C:0.07, G:0.30, T:0.18
Consensus pattern (21 bp):
AGAATGTGCAAAAATGGAGCA
Found at i:13147906 original size:34 final size:34
Alignment explanation
Indices: 13147868--13147952 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 34
13147858 ATGTTTTTTT
* *
13147868 GATAAAAATACCACTAAATTAGTGGCATCTTAAA
1 GATAAAAATACCACTAAAATAGCGGCATCTTAAA
* * * **
13147902 GATAAAAATGCTACTAAAATAGCGGCATTTTCTA
1 GATAAAAATACCACTAAAATAGCGGCATCTTAAA
*
13147936 GATACAAATACCACTAA
1 GATAAAAATACCACTAA
13147953 TATGAGGTGT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (34 bp):
GATAAAAATACCACTAAAATAGCGGCATCTTAAA
Found at i:13148156 original size:34 final size:34
Alignment explanation
Indices: 13148007--13148159 Score: 85
Period size: 34 Copynumber: 4.5 Consensus size: 34
13147997 TTTTTAGATT
* * *
13148007 CAAACGATACTAATAT-ACTGGCATTTTTCAGATA
1 CAAACGCTACTAATATAAC-GGCATTTTCCAAATA
* ** * *
13148041 CAAATGCCGCTAATATAGCGGCATTTTCCAAACA
1 CAAACGCTACTAATATAACGGCATTTTCCAAATA
* * ** * ** * * *
13148075 AAAACACCCCT-ATATTAGCAACATTTTCTAGATT
1 CAAACGCTACTAATA-TAACGGCATTTTCCAAATA
* * *
13148109 TAAATGCTGCTAATATAACGGCATTTTCCAAATA
1 CAAACGCTACTAATATAACGGCATTTTCCAAATA
13148143 CAAACGCTACTAATATA
1 CAAACGCTACTAATATA
13148160 GCGACGTTTT
Statistics
Matches: 84, Mismatches: 32, Indels: 6
0.69 0.26 0.05
Matches are distributed among these distances:
33 3 0.04
34 77 0.92
35 4 0.05
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (34 bp):
CAAACGCTACTAATATAACGGCATTTTCCAAATA
Found at i:13155870 original size:22 final size:22
Alignment explanation
Indices: 13155800--13155870 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
13155790 TTTGTTTATA
*
13155800 TATATATATATAACAAAAAATTT
1 TATAT-TATTTAACAAAAAATTT
* * *** *
13155823 TATAATCTTTAA-GTTAAATTAA
1 TATATTATTTAACAAAAAATT-T
13155845 TATATTATTTAACAAAAAATTT
1 TATATTATTTAACAAAAAATTT
13155867 TATA
1 TATA
13155871 ATTTTTTTAA
Statistics
Matches: 33, Mismatches: 13, Indels: 5
0.65 0.25 0.10
Matches are distributed among these distances:
21 5 0.15
22 19 0.58
23 9 0.27
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (22 bp):
TATATTATTTAACAAAAAATTT
Found at i:13156492 original size:15 final size:16
Alignment explanation
Indices: 13156474--13156503 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13156464 GGATGATGGA
13156474 TTAGAGAGA-GAAAGG
1 TTAGAGAGATGAAAGG
13156489 TTAGAGAGATGAAAG
1 TTAGAGAGATGAAAG
13156504 AAAAAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.47, C:0.00, G:0.37, T:0.17
Consensus pattern (16 bp):
TTAGAGAGATGAAAGG
Found at i:13156698 original size:13 final size:13
Alignment explanation
Indices: 13156671--13156706 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
13156661 TTTTATCTGT
13156671 CTGCTATAG-TGA
1 CTGCTATAGTTGA
*
13156683 CTGCTACAGTTGA
1 CTGCTATAGTTGA
13156696 CTGCTATAGTT
1 CTGCTATAGTT
13156707 TTTCCTGTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 8 0.38
13 13 0.62
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (13 bp):
CTGCTATAGTTGA
Found at i:13164115 original size:5 final size:5
Alignment explanation
Indices: 13164098--13164133 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
13164088 TGTATATATT
*
13164098 TTATC TTAT- TTATA TTATA TTATA TTATA TTATA TT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TT
13164134 TCATTTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (5 bp):
TTATA
Found at i:13164125 original size:24 final size:24
Alignment explanation
Indices: 13164080--13164130 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
13164070 ACTTTTGTTG
* * *
13164080 TATTTATTTGTATATATTTTATCT
1 TATTTATTTATATATATATTATAT
13164104 TATTTATATTATAT-TATATTATAT
1 TATTTAT-TTATATATATATTATAT
13164128 TAT
1 TAT
13164131 ATTTCATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (24 bp):
TATTTATTTATATATATATTATAT
Found at i:13164143 original size:15 final size:15
Alignment explanation
Indices: 13164062--13164134 Score: 53
Period size: 15 Copynumber: 4.9 Consensus size: 15
13164052 TTTTTTTACT
*
13164062 TTATATT-TACTTTTG
1 TTATATTATA-TTTTA
*
13164077 TTGTATT-TATTTGTA
1 TTATATTATATTT-TA
* *
13164092 -TATATTTTATCTTA
1 TTATATTATATTTTA
*
13164106 TTTATATTATATTATA
1 -TTATATTATATTTTA
13164122 TTATATTATATTT
1 TTATATTATATTT
13164135 CATTTTATTT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
14 10 0.22
15 25 0.54
16 11 0.24
ACGTcount: A:0.27, C:0.03, G:0.04, T:0.66
Consensus pattern (15 bp):
TTATATTATATTTTA
Found at i:13164783 original size:19 final size:19
Alignment explanation
Indices: 13164756--13164797 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
13164746 CAAATTCTAG
*
13164756 TGAAATTTCCAGAATCTGA
1 TGAAATTTCCAAAATCTGA
* *
13164775 TGAAGTTTCCAAAATCTGT
1 TGAAATTTCCAAAATCTGA
13164794 TGAA
1 TGAA
13164798 CTTTTTGGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (19 bp):
TGAAATTTCCAAAATCTGA
Found at i:13172332 original size:20 final size:20
Alignment explanation
Indices: 13172300--13172337 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
13172290 AAAGAATGAT
*
13172300 AGATGATAAATGATAAAACA
1 AGATGATAAATGACAAAACA
13172320 AGATGA-AAGATGACAAAA
1 AGATGATAA-ATGACAAAA
13172338 AAAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.61, C:0.05, G:0.18, T:0.16
Consensus pattern (20 bp):
AGATGATAAATGACAAAACA
Found at i:13173785 original size:21 final size:21
Alignment explanation
Indices: 13173737--13173787 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
13173727 AGTCAAAATT
* *
13173737 GGTCAAACTAGATTGAACTTG
1 GGTCAATCCAGATTGAACTTG
13173758 GGTCAATCCAGATTGAACTTG
1 GGTCAATCCAGATTGAACTTG
13173779 GGTCAATCC
1 GGTCAATCC
13173788 TTAGAATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (21 bp):
GGTCAATCCAGATTGAACTTG
Found at i:13174136 original size:142 final size:143
Alignment explanation
Indices: 13173944--13174331 Score: 439
Period size: 142 Copynumber: 2.7 Consensus size: 143
13173934 TGAAAACTTT
** * * * * *
13173944 TAGATCATGTTTAAATATTATTTTATGATTTTTTATGTATTGAAAACCTTGAACGCACCTTGGAA
1 TAGATCATGTTTTGATATTAATTTATGATTTTTAATGTATTAAAAACCTTGATCGCACCTTGAAA
* * *
13174009 GGTGTGGAATTACAAAATTATCC-TTTAGGGGTATTTTCGTAA-GTAACCTTTCC-AAGGTCAG-
66 GGTATGAAATTACAAAA-TA-CCTTTTAGGGGTATTTTCGTAATGTAA-CTTTCCTAAAGT-AGA
13174070 TTTTTTGTG-AAAGCTC
127 TTTTTTGTGAAAAGCTC
* * * *
13174086 TAGATCATGTTTTGATATTAATTTATGATCTTTGATGCATTAAAAACCTTGATCGTACCTTGAAA
1 TAGATCATGTTTTGATATTAATTTATGATTTTTAATGTATTAAAAACCTTGATCGCACCTTGAAA
* * * *
13174151 GGTATAAAATTACTAAAATACCTTTTAGGGGTATTTTTGTAATTTAACTTTCCTAAAGTTGATTT
66 GGTATGAAATTAC-AAAATACCTTTTAGGGGTATTTTCGTAATGTAACTTTCCTAAAGTAGATTT
*
13174216 TTTGTGAAAAGCTG
130 TTTGTGAAAAGCTC
* * **
13174230 TAAATCTTAG-TTTGATATT-ATTTCATGATTTTTAATGTATTAAAAACCTTGATTACACCTTGA
1 TAGATCAT-GTTTTGATATTAATTT-ATGATTTTTAATGTATTAAAAACCTTGATCGCACCTTGA
*
13174293 AAGGTATGAAATTACCAAAATACCTTTTAGGAGTATTTT
64 AAGGTATGAAATTA-CAAAATACCTTTTAGGGGTATTTT
13174332 TTTAATTTGA
Statistics
Matches: 209, Mismatches: 28, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
141 2 0.01
142 92 0.44
143 24 0.11
144 89 0.43
145 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.41
Consensus pattern (143 bp):
TAGATCATGTTTTGATATTAATTTATGATTTTTAATGTATTAAAAACCTTGATCGCACCTTGAAA
GGTATGAAATTACAAAATACCTTTTAGGGGTATTTTCGTAATGTAACTTTCCTAAAGTAGATTTT
TTGTGAAAAGCTC
Found at i:13174290 original size:144 final size:141
Alignment explanation
Indices: 13173880--13174406 Score: 449
Period size: 144 Copynumber: 3.7 Consensus size: 141
13173870 TTCGAGGGAT
* * * * ** * ** * *
13173880 AAAATACCCTTT-GGGGTATTTTTATAATTTGACCTTTTCAAGGTTGGTCTTTCATGAAAACTTT
1 AAAATACCTTTTAGGGGTATTTTTGTAATTTAACCTTTCCAAGGTCAGTTTTTTGTGAAAGC-TC
* ** * * * *
13173944 TAGATCATGTTTAAATATTATTTTATGATTTTTTATGTATTGAAAACCTTGAACGCACCTTGGAA
65 TAAATCATGTTTTGATATTA-TTTATGATTTTTAATGTATTAAAAACCTTGATCGCACCTTGAAA
* *
13174009 GGTGTGGAATTAC
129 GGTATGAAATTAC
* *
13174022 AAAATTATCC-TTTAGGGGTATTTTCGTAA-GTAACCTTTCCAAGGTCAGTTTTTTGTGAAAGCT
1 AAAA-TA-CCTTTTAGGGGTATTTTTGTAATTTAACCTTTCCAAGGTCAGTTTTTTGTGAAAGCT
* * * * *
13174085 CTAGATCATGTTTTGATATTAATTTATGATCTTTGATGCATTAAAAACCTTGATCGTACCTTGAA
64 CTAAATCATGTTTTGATATT-ATTTATGATTTTTAATGTATTAAAAACCTTGATCGCACCTTGAA
*
13174150 AGGTATAAAATTAC
128 AGGTATGAAATTAC
* *
13174164 TAAAATACCTTTTAGGGGTATTTTTGTAATTTAA-CTTTCCTAAAGT-TGATTTTTTGTGAAAAG
1 -AAAATACCTTTTAGGGGTATTTTTGTAATTTAACCTTTCC-AAGGTCAG-TTTTTTGTG-AAAG
* * **
13174227 CTGTAAATCTTAG-TTTGATATTATTTCATGATTTTTAATGTATTAAAAACCTTGATTACACCTT
62 CTCTAAATCAT-GTTTTGATATTATTT-ATGATTTTTAATGTATTAAAAACCTTGATCGCACCTT
13174291 GAAAGGTATGAAATTACC
125 GAAAGGTATGAAATTA-C
* * * * * **
13174309 AAAATACCTTTTAGGAGTATTTTTTTAATTTGACCCTCCCAAGGTC-GATTTTTCATGAAAAGCT
1 AAAATACCTTTTAGGGGTATTTTTGTAATTTAACCTTTCCAAGGTCAG-TTTTTTGTG-AAAGCT
* * * *
13174373 CTAGATAATG-ATTAAGTATTATTTTATGATTTTT
64 CTAAATCATGTTTTGA-TATTA-TTTATGATTTTT
13174407 TTGGTGTTTT
Statistics
Matches: 316, Mismatches: 52, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
141 2 0.01
142 96 0.30
143 58 0.18
144 151 0.48
145 9 0.03
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (141 bp):
AAAATACCTTTTAGGGGTATTTTTGTAATTTAACCTTTCCAAGGTCAGTTTTTTGTGAAAGCTCT
AAATCATGTTTTGATATTATTTATGATTTTTAATGTATTAAAAACCTTGATCGCACCTTGAAAGG
TATGAAATTAC
Found at i:13174938 original size:7 final size:7
Alignment explanation
Indices: 13174876--13175019 Score: 57
Period size: 7 Copynumber: 22.1 Consensus size: 7
13174866 CCCTAACCAT
*
13174876 ACCCCAA
1 ACCCTAA
13174883 ACCCTTAA
1 ACCC-TAA
13174891 A-CCTAA
1 ACCCTAA
13174897 A-CCTAA
1 ACCCTAA
*
13174903 ATCCT-A
1 ACCCTAA
13174909 A-CCTAA
1 ACCCTAA
*
13174915 GCCCTAA
1 ACCCTAA
*
13174922 GCCC--A
1 ACCCTAA
13174927 A-CCTAA
1 ACCCTAA
13174933 ACCCT-A
1 ACCCTAA
13174939 A-CC-AA
1 ACCCTAA
13174944 ACCCTAA
1 ACCCTAA
* *
13174951 A-TCAAA
1 ACCCTAA
*
13174957 ACCCCCAAA
1 A--CCCTAA
*
13174966 ACCTTAA
1 ACCCTAA
13174973 ACCCT-A
1 ACCCTAA
13174979 A-CCTAA
1 ACCCTAA
13174985 ACCCTAA
1 ACCCTAA
*
13174992 GCCCATAA
1 ACCC-TAA
13175000 ACCCT-A
1 ACCCTAA
*
13175006 A-CCTAG
1 ACCCTAA
13175012 ACCCTAA
1 ACCCTAA
13175019 A
1 A
13175020 GTGAACCTAA
Statistics
Matches: 106, Mismatches: 13, Indels: 36
0.68 0.08 0.23
Matches are distributed among these distances:
4 2 0.02
5 14 0.13
6 30 0.28
7 46 0.43
8 9 0.08
9 5 0.05
ACGTcount: A:0.42, C:0.40, G:0.03, T:0.15
Consensus pattern (7 bp):
ACCCTAA
Found at i:13174949 original size:18 final size:18
Alignment explanation
Indices: 13174889--13174951 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 18
13174879 CCAAACCCTT
*
13174889 AAACCTAAA-CCTAAATCC
1 AAACCTAAACCCT-AAGCC
* *
13174907 TAACCTAAGCCCTAAGCC
1 AAACCTAAACCCTAAGCC
*
13174925 CAACCTAAACCCTAA-CC
1 AAACCTAAACCCTAAGCC
13174942 AAACCCTAAA
1 AAA-CCTAAA
13174952 TCAAAACCCC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
17 4 0.11
18 30 0.81
19 3 0.08
ACGTcount: A:0.44, C:0.38, G:0.03, T:0.14
Consensus pattern (18 bp):
AAACCTAAACCCTAAGCC
Found at i:13175002 original size:15 final size:12
Alignment explanation
Indices: 13174834--13175018 Score: 87
Period size: 12 Copynumber: 14.8 Consensus size: 12
13174824 CCTAAATCCA
13174834 AAACCCTAACCT
1 AAACCCTAACCT
** *
13174846 AGTCCCTAATCT
1 AAACCCTAACCT
13174858 AAA-CCTAACCCT
1 AAACCCTAA-CCT
* * *
13174870 -AACCATACCCC
1 AAACCCTAACCT
13174881 AAACCCTTAAACCT
1 AAACCC-T-AACCT
13174895 AAA-CCTAAATCCT
1 AAACCCT-AA-CCT
13174908 -AA-CCTAAGCCCT
1 AAACCCTAA--CCT
*
13174920 AAGCCC-AACCT
1 AAACCCTAACCT
13174931 AAACCCTAACC-
1 AAACCCTAACCT
* *
13174942 AAACCCTAAATCA
1 AAACCCT-AACCT
*
13174955 AAACCCCCAAAACCTT
1 AAA--CCC-TAACC-T
13174971 AAACCCTAACCT
1 AAACCCTAACCT
13174983 AAACCCTAAGCCCAT
1 AAACCCTAA--CC-T
13174998 AAACCCTAACCT
1 AAACCCTAACCT
*
13175010 AGACCCTAA
1 AAACCCTAA
13175019 AGTGAACCTA
Statistics
Matches: 133, Mismatches: 21, Indels: 38
0.69 0.11 0.20
Matches are distributed among these distances:
11 26 0.20
12 57 0.43
13 18 0.14
14 13 0.10
15 16 0.12
16 3 0.02
ACGTcount: A:0.41, C:0.40, G:0.03, T:0.16
Consensus pattern (12 bp):
AAACCCTAACCT
Found at i:13175077 original size:15 final size:15
Alignment explanation
Indices: 13175057--13175103 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
13175047 AACCCTAACA
13175057 TAAACCATTAAACCT
1 TAAACCATTAAACCT
13175072 TAAACCAATCTTAAACCCT
1 TAAACC-A--TTAAA-CCT
13175091 TAAACC-TTAAACC
1 TAAACCATTAAACC
13175104 AACCCCTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
14 2 0.07
15 11 0.39
16 1 0.04
18 5 0.18
19 9 0.32
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAACCATTAAACCT
Found at i:13175107 original size:19 final size:19
Alignment explanation
Indices: 13175085--13175128 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
13175075 ACCAATCTTA
*
13175085 AACCCTTAAACCTTAAACC
1 AACCCTTAAACCCTAAACC
*
13175104 AACCCCTAAACCCTAAACC
1 AACCCTTAAACCCTAAACC
13175123 AACCCT
1 AACCCT
13175129 ATTTTGAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.43, G:0.00, T:0.16
Consensus pattern (19 bp):
AACCCTTAAACCCTAAACC
Found at i:13175120 original size:26 final size:26
Alignment explanation
Indices: 13175057--13175122 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
13175047 AACCCTAACA
* * *
13175057 TAAACCATTAAACCTTAAACCAATCT
1 TAAACCCTTAAACCTTAAACCAACCC
13175083 TAAACCCTTAAACCTTAAACCAACCCC
1 TAAACCCTTAAACCTTAAACCAA-CCC
13175110 TAAACCC-TAAACC
1 TAAACCCTTAAACC
13175123 AACCCTATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 28 0.78
27 8 0.22
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (26 bp):
TAAACCCTTAAACCTTAAACCAACCC
Found at i:13175215 original size:5 final size:5
Alignment explanation
Indices: 13175207--13175272 Score: 60
Period size: 5 Copynumber: 13.0 Consensus size: 5
13175197 CCTCAAATAT
* * * * *
13175207 CCAAA CCAAA CCAAA CCAAA CCCAAG CTAAA CCAAA CCAAC CCAAG TCAAA
1 CCAAA CCAAA CCAAA CCAAA -CCAAA CCAAA CCAAA CCAAA CCAAA CCAAA
* *
13175258 CCAAA ACAAC CCAAA
1 CCAAA CCAAA CCAAA
13175273 ATTGAATCTA
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
5 43 0.91
6 4 0.09
ACGTcount: A:0.55, C:0.39, G:0.03, T:0.03
Consensus pattern (5 bp):
CCAAA
Found at i:13175250 original size:20 final size:20
Alignment explanation
Indices: 13175213--13175271 Score: 84
Period size: 20 Copynumber: 2.9 Consensus size: 20
13175203 ATATCCAAAC
13175213 CAAACCAAACCAAACCCAAG-
1 CAAACCAAACC-AACCCAAGT
13175233 CTAAACCAAACCAACCCAAGT
1 C-AAACCAAACCAACCCAAGT
*
13175254 CAAACCAAAACAACCCAA
1 CAAACCAAACCAACCCAA
13175272 AATTGAATCT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
20 25 0.69
21 11 0.31
ACGTcount: A:0.54, C:0.39, G:0.03, T:0.03
Consensus pattern (20 bp):
CAAACCAAACCAACCCAAGT
Found at i:13176227 original size:32 final size:32
Alignment explanation
Indices: 13176191--13176279 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 32
13176181 TGTTTTTTAC
* *
13176191 CTTGGCTTAATCCCGTCACCTTCATCTTTGAT
1 CTTGGCTTAATCCAGTCACCTTCATCTTTAAT
* * *
13176223 CTTGGTTTAAT-CTGATCACCTTTATCTTTAAT
1 CTTGGCTTAATCCAG-TCACCTTCATCTTTAAT
* *
13176255 CTTGGCTCAATCTAGTCACCTTCAT
1 CTTGGCTTAATCCAGTCACCTTCAT
13176280 TTTTTACTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
31 2 0.04
32 43 0.93
33 1 0.02
ACGTcount: A:0.19, C:0.27, G:0.11, T:0.43
Consensus pattern (32 bp):
CTTGGCTTAATCCAGTCACCTTCATCTTTAAT
Found at i:13176350 original size:33 final size:32
Alignment explanation
Indices: 13176313--13176544 Score: 198
Period size: 33 Copynumber: 7.0 Consensus size: 32
13176303 CACCTTCATA
*
13176313 TTTGACCTTAGCTAAG-CCTAAATCATATCATTT
1 TTTGA-CTTAGCTAAGTCC-AAGTCATATCATTT
*
13176346 TTTGACTTCAGCTAAGTCCAAGTCATTTCATTT
1 TTTGACTT-AGCTAAGTCCAAGTCATATCATTT
* *
13176379 CTTGACTTCGGCTAAGTCCAAGTCATATCATTT
1 TTTGACTT-AGCTAAGTCCAAGTCATATCATTT
* * *
13176412 TTTGACTTAGGCTAAGACCAAATCATATCTTTT
1 TTTGACTTA-GCTAAGTCCAAGTCATATCATTT
* * * *
13176445 TTTAACTTTGCATAAGTCTAAGTTATATCATTT
1 TTTGACTTAGC-TAAGTCCAAGTCATATCATTT
** * *
13176478 TTCAATTTAGGCTAAGTCCAAGTCATTTCATTT
1 TTTGACTTA-GCTAAGTCCAAGTCATATCATTT
* * * *
13176511 TCCT-ACTTCGGCTAAGACCAAGTCATTTCATTT
1 T-TTGACTT-AGCTAAGTCCAAGTCATATCATTT
13176544 T
1 T
13176545 CCAACTTTTG
Statistics
Matches: 164, Mismatches: 28, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
32 5 0.03
33 155 0.95
34 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (32 bp):
TTTGACTTAGCTAAGTCCAAGTCATATCATTT
Found at i:13176393 original size:66 final size:65
Alignment explanation
Indices: 13176335--13176544 Score: 226
Period size: 66 Copynumber: 3.2 Consensus size: 65
13176325 TAAGCCTAAA
*
13176335 TCATATCATTTTTTGACTTCA-GCTAAGTCCAAGTCATTTCATTTCTTGACTTCGGCTAAGTCCA
1 TCATATCATTTTTTGACTT-AGGCTAAGTCCAAGTCATTTCATTTCTT-ACTTCGGCTAAGACCA
13176399 AG
64 AG
* * * * * * * *
13176401 TCATATCATTTTTTGACTTAGGCTAAGACCAAATCATATCTTTTTTTAACTT-TGCATAAGTCTA
1 TCATATCATTTTTTGACTTAGGCTAAGTCCAAGTCATTTCATTTCTT-ACTTCGGC-TAAGACCA
13176465 AG
64 AG
* ** * *
13176467 TTATATCATTTTTCAATTTAGGCTAAGTCCAAGTCATTTCATTTTCCTACTTCGGCTAAGACCAA
1 TCATATCATTTTTTGACTTAGGCTAAGTCCAAGTCATTTCA-TTTCTTACTTCGGCTAAGACCAA
13176532 G
65 G
*
13176533 TCATTTCATTTT
1 TCATATCATTTT
13176545 CCAACTTTTG
Statistics
Matches: 117, Mismatches: 23, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
65 3 0.03
66 108 0.92
67 6 0.05
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.42
Consensus pattern (65 bp):
TCATATCATTTTTTGACTTAGGCTAAGTCCAAGTCATTTCATTTCTTACTTCGGCTAAGACCAAG
Found at i:13176438 original size:99 final size:99
Alignment explanation
Indices: 13176313--13176544 Score: 258
Period size: 99 Copynumber: 2.3 Consensus size: 99
13176303 CACCTTCATA
* *
13176313 TTTGACCTTA-GCTAAG-CCTAAATCATATCATTTTTTGACTTCAGC-TAAGTCCAAGTCATTTC
1 TTTGA-CTTAGGCTAAGACC-AAATCATATCATTTTTTAACTT-AGCATAAGTCCAAGTCATATC
* *
13176375 ATTTCTT-GACTTCGGCTAAGTCCAAGTCATATCATTT
63 ATTT-TTCAACTTAGGCTAAGTCCAAGTCATATCATTT
* * * *
13176412 TTTGACTTAGGCTAAGACCAAATCATATCTTTTTTTAACTTTGCATAAGTCTAAGTTATATCATT
1 TTTGACTTAGGCTAAGACCAAATCATATCATTTTTTAACTTAGCATAAGTCCAAGTCATATCATT
* *
13176477 TTTCAATTTAGGCTAAGTCCAAGTCATTTCATTT
66 TTTCAACTTAGGCTAAGTCCAAGTCATATCATTT
* * * *
13176511 TCCT-ACTTCGGCTAAGACCAAGTCATTTCATTTT
1 T-TTGACTTAGGCTAAGACCAAATCATATCATTTT
13176545 CCAACTTTTG
Statistics
Matches: 113, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
98 8 0.07
99 102 0.90
100 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (99 bp):
TTTGACTTAGGCTAAGACCAAATCATATCATTTTTTAACTTAGCATAAGTCCAAGTCATATCATT
TTTCAACTTAGGCTAAGTCCAAGTCATATCATTT
Found at i:13176602 original size:32 final size:32
Alignment explanation
Indices: 13176528--13176590 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
13176518 TCGGCTAAGA
*
13176528 CCAAGTCATTTCATTTTCCAACTTTTGGCTCAAT
1 CCAAGTCA--TCATTTTCCAACTTTTGACTCAAT
*
13176562 CCAAGTCATCATTTTCTAACTTTTGACTC
1 CCAAGTCATCATTTTCCAACTTTTGACTC
13176591 TATCTTAGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 19 0.70
34 8 0.30
ACGTcount: A:0.24, C:0.27, G:0.08, T:0.41
Consensus pattern (32 bp):
CCAAGTCATCATTTTCCAACTTTTGACTCAAT
Found at i:13176871 original size:5 final size:5
Alignment explanation
Indices: 13176831--13176925 Score: 50
Period size: 5 Copynumber: 18.8 Consensus size: 5
13176821 CTATAAATAT
* * * * * *
13176831 TTTTA TCTTA -TTTA TCTTA TTTACA TTTTA GTTTA TTTTA TTTCA TTCATTT
1 TTTTA TTTTA TTTTA TTTTA TTT-TA TTTTA TTTTA TTTTA TTTTA TT--TTA
* * * * *
13176883 TTTTA TTTCA TTTAA TTTAA TTTAA TTTAA TTTT- TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
13176926 GTTTATCCTC
Statistics
Matches: 70, Mismatches: 15, Indels: 10
0.74 0.16 0.11
Matches are distributed among these distances:
4 7 0.10
5 56 0.80
6 4 0.06
7 3 0.04
ACGTcount: A:0.23, C:0.06, G:0.01, T:0.69
Consensus pattern (5 bp):
TTTTA
Found at i:13177518 original size:18 final size:19
Alignment explanation
Indices: 13177495--13177531 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
13177485 TTGCCTATTG
13177495 AAGTTTTT-AGCTAAATTC
1 AAGTTTTTCAGCTAAATTC
*
13177513 AAGTTTTTCAGCTAGATTC
1 AAGTTTTTCAGCTAAATTC
13177532 TGGCAAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (19 bp):
AAGTTTTTCAGCTAAATTC
Found at i:13177772 original size:21 final size:21
Alignment explanation
Indices: 13177747--13177786 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
13177737 CTTTTTTTTT
*
13177747 AATATTATTTAATTTAATTTA
1 AATATTAGTTAATTTAATTTA
*
13177768 AATATTAGTTATTTTAATT
1 AATATTAGTTAATTTAATT
13177787 GATTTTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (21 bp):
AATATTAGTTAATTTAATTTA
Found at i:13178029 original size:93 final size:93
Alignment explanation
Indices: 13177917--13178086 Score: 213
Period size: 93 Copynumber: 1.8 Consensus size: 93
13177907 CATAATAAAA
* * ** *
13177917 TTTTATAAAAAAATTAATTT-AATCCTACCAAATTTTTGAAA-GATTTAAAT-TTTTAAATTAAG
1 TTTTATAAAAAAATAAATTTCAATCCTACCAAATTATT-AAAGGA-TTAAATATCAT-AATTAAA
13177979 TCTTATCAAACTATTGGAAGACTTAATGAGT
63 TCTTATCAAACTATTGGAAGACTTAATGAGT
*
13178010 TTTTAT-AAAAAATAAAATTTCAATCCTATCAAATTATTAAAGGATTAAATATCATAATTAAATC
1 TTTTATAAAAAAAT-AAATTTCAATCCTACCAAATTATTAAAGGATTAAATATCATAATTAAATC
*
13178074 TTATCAAATTATT
65 TTATCAAACTATT
13178087 AAAAGATATA
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
92 7 0.11
93 40 0.61
94 19 0.29
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.41
Consensus pattern (93 bp):
TTTTATAAAAAAATAAATTTCAATCCTACCAAATTATTAAAGGATTAAATATCATAATTAAATCT
TATCAAACTATTGGAAGACTTAATGAGT
Found at i:13188162 original size:18 final size:18
Alignment explanation
Indices: 13188135--13188169 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13188125 TGAAATTTTC
* *
13188135 ATTTACTTTTTCTTTCTT
1 ATTTAATTTTTCATTCTT
13188153 ATTTAATTTTTCATTCT
1 ATTTAATTTTTCATTCT
13188170 AATCTTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTAATTTTTCATTCTT
Found at i:13188181 original size:19 final size:18
Alignment explanation
Indices: 13188135--13188181 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
13188125 TGAAATTTTC
* * *
13188135 ATTTACTTTTTCTTTCTT
1 ATTTAATTTTTCATTCTA
13188153 ATTTAATTTTTCATTCTA
1 ATTTAATTTTTCATTCTA
13188171 ATCTT-ATTTTT
1 AT-TTAATTTTT
13188182 AATTTCTACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 23 0.92
19 2 0.08
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTAATTTTTCATTCTA
Found at i:13191109 original size:23 final size:22
Alignment explanation
Indices: 13191078--13191134 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
13191068 CTTTTTTTCA
*
13191078 TTTTGTTTTTTAGTTCGTTTATT
1 TTTTATTTTTTA-TTCGTTTATT
**
13191101 TTTTATTTTTTATTTTTTTATT
1 TTTTATTTTTTATTCGTTTATT
13191123 TTTTGATTTTTT
1 TTTT-ATTTTTT
13191135 TGATTTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 12 0.40
23 18 0.60
ACGTcount: A:0.11, C:0.02, G:0.07, T:0.81
Consensus pattern (22 bp):
TTTTATTTTTTATTCGTTTATT
Found at i:13191111 original size:9 final size:8
Alignment explanation
Indices: 13191098--13191143 Score: 60
Period size: 7 Copynumber: 5.9 Consensus size: 8
13191088 TAGTTCGTTT
13191098 ATTTTTT-
1 ATTTTTTG
13191105 ATTTTTT-
1 ATTTTTTG
*
13191112 ATTTTTTT
1 ATTTTTTG
13191120 ATTTTTTG
1 ATTTTTTG
13191128 ATTTTTTTG
1 A-TTTTTTG
13191137 ATTTTTT
1 ATTTTTT
13191144 TCTTTTGGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
7 14 0.39
8 14 0.39
9 8 0.22
ACGTcount: A:0.13, C:0.00, G:0.04, T:0.83
Consensus pattern (8 bp):
ATTTTTTG
Found at i:13191116 original size:6 final size:7
Alignment explanation
Indices: 13191095--13191134 Score: 62
Period size: 7 Copynumber: 5.4 Consensus size: 7
13191085 TTTTAGTTCG
13191095 TTTATTT
1 TTTATTT
13191102 TTTATTT
1 TTTATTT
13191109 TTTATTTT
1 TTTA-TTT
13191117 TTTATTT
1 TTTATTT
13191124 TTTGATTT
1 TTT-ATTT
13191132 TTT
1 TTT
13191135 TGATTTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 17 0.55
8 14 0.45
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (7 bp):
TTTATTT
Found at i:13191144 original size:9 final size:8
Alignment explanation
Indices: 13191095--13191149 Score: 69
Period size: 8 Copynumber: 7.0 Consensus size: 8
13191085 TTTTAGTTCG
13191095 TTTA-TTT
1 TTTATTTT
13191102 TTTA-TTT
1 TTTATTTT
13191109 TTTATTTT
1 TTTATTTT
13191117 TTTATTTT
1 TTTATTTT
*
13191125 TTGATTTT
1 TTTATTTT
13191133 TTTGATTTT
1 TTT-ATTTT
*
13191142 TTTCTTTT
1 TTTATTTT
13191150 GGTTTTGGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
7 11 0.26
8 24 0.56
9 8 0.19
ACGTcount: A:0.11, C:0.02, G:0.04, T:0.84
Consensus pattern (8 bp):
TTTATTTT
Found at i:13191155 original size:6 final size:6
Alignment explanation
Indices: 13191146--13191183 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
13191136 GATTTTTTTC
*
13191146 TTTTGG TTTTGG TTTTGG TTTT-G TTTT-G TTTTGC TTTT
1 TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTT
13191184 TTTAATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 10 0.33
6 20 0.67
ACGTcount: A:0.00, C:0.03, G:0.24, T:0.74
Consensus pattern (6 bp):
TTTTGG
Found at i:13191184 original size:12 final size:12
Alignment explanation
Indices: 13191140--13191183 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
13191130 TTTTTTGATT
*
13191140 TTTTTCTTTTGG
1 TTTTGCTTTTGG
*
13191152 TTTTGGTTTTGG
1 TTTTGCTTTTGG
13191164 TTTTG-TTTT-G
1 TTTTGCTTTTGG
13191174 TTTTGCTTTT
1 TTTTGCTTTT
13191184 TTTAATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 6 0.21
11 8 0.28
12 15 0.52
ACGTcount: A:0.00, C:0.05, G:0.20, T:0.75
Consensus pattern (12 bp):
TTTTGCTTTTGG
Found at i:13192460 original size:29 final size:30
Alignment explanation
Indices: 13192412--13192478 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
13192402 ATGAGTCTTC
* *
13192412 CATTATTTTTTCATTTTTTT-GTTTTTTTT
1 CATTATTTTATCATTTTTTTACTTTTTTTT
13192441 CATTATTTTAT-ATTTTTTTTACTTTTTTTT
1 CATTATTTTATCA-TTTTTTTACTTTTTTTT
*
13192471 -ATTTTTTT
1 CATTATTTT
13192479 TGTTTCACCC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 1 0.03
29 24 0.73
30 8 0.24
ACGTcount: A:0.13, C:0.06, G:0.01, T:0.79
Consensus pattern (30 bp):
CATTATTTTATCATTTTTTTACTTTTTTTT
Found at i:13192479 original size:9 final size:9
Alignment explanation
Indices: 13192417--13192479 Score: 65
Period size: 9 Copynumber: 6.8 Consensus size: 9
13192407 TCTTCCATTA
*
13192417 TTTTTTCAT
1 TTTTTTTAT
13192426 TTTTTTGT-T
1 TTTTTT-TAT
*
13192435 TTTTTTCAT
1 TTTTTTTAT
*
13192444 TATTTTATAT
1 T-TTTTTTAT
13192454 TTTTTTTACT
1 TTTTTTTA-T
13192464 TTTTTTTAT
1 TTTTTTTAT
13192473 TTTTTTT
1 TTTTTTT
13192480 GTTTCACCCT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
9 29 0.64
10 16 0.36
ACGTcount: A:0.11, C:0.05, G:0.02, T:0.83
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:13203166 original size:9 final size:9
Alignment explanation
Indices: 13203154--13203196 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
13203144 TATTGTTGTT
13203154 ATTATTATC
1 ATTATTATC
*
13203163 ATTATTATT
1 ATTATTATC
*
13203172 ATTATTATT
1 ATTATTATC
**
13203181 ATTATTGCC
1 ATTATTATC
13203190 ATTATTA
1 ATTATTA
13203197 GAAAAATAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (9 bp):
ATTATTATC
Found at i:13203196 original size:3 final size:3
Alignment explanation
Indices: 13203134--13203186 Score: 79
Period size: 3 Copynumber: 17.7 Consensus size: 3
13203124 CATTTTCCTT
* * *
13203134 TTA TTA TTA TTA TTG TTG TTA TTA TTA TCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
13203182 TTA TT
1 TTA TT
13203187 GCCATTATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:13209072 original size:2 final size:2
Alignment explanation
Indices: 13209065--13209091 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13209055 AGGTAAAATT
13209065 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
13209092 TAAATTTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13210776 original size:18 final size:16
Alignment explanation
Indices: 13210753--13210788 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
13210743 TGAACACCAC
*
13210753 AAAAATTTGAAAAAGAA
1 AAAAAATTGAAAAA-AA
13210770 AAAAAATTGAAAAAAA
1 AAAAAATTGAAAAAAA
13210786 AAA
1 AAA
13210789 TTTCTTGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.78, C:0.00, G:0.08, T:0.14
Consensus pattern (16 bp):
AAAAAATTGAAAAAAA
Found at i:13210881 original size:68 final size:70
Alignment explanation
Indices: 13210765--13210894 Score: 203
Period size: 68 Copynumber: 1.9 Consensus size: 70
13210755 AAATTTGAAA
13210765 AAGAAAAAAAATTGAAAAAAAAAATTTCTTGGACACCTTAAAAATTTTTCCTAACAACTTTTCCA
1 AAGAAAAAAAATTGAAAAAAAAAATTTCTTGGACACCTTAAAAATTTTTCCTAACAACTTTTCCA
13210830 TTGAT
66 TTGAT
* * *
13210835 AAGAAAAAAATTTGAAAAAAAAAA-TT-TTGGACA-CTTCAAAATTTTTTCCTAACACCTTTT
1 AAGAAAAAAAATTGAAAAAAAAAATTTCTTGGACACCTT-AAAAATTTTTCCTAACAACTTTT
13210895 GGAATGACAA
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
67 3 0.05
68 28 0.50
69 2 0.04
70 23 0.41
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (70 bp):
AAGAAAAAAAATTGAAAAAAAAAATTTCTTGGACACCTTAAAAATTTTTCCTAACAACTTTTCCA
TTGAT
Found at i:13215696 original size:14 final size:14
Alignment explanation
Indices: 13215677--13215722 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
13215667 AGATCTTAAA
13215677 AAATTTTAAGAATC
1 AAATTTTAAGAATC
*
13215691 AAATTTTGTA-AATC
1 AAATTTT-AAGAATC
*
13215705 AAA-TTAAAGAATC
1 AAATTTTAAGAATC
13215718 AAATT
1 AAATT
13215723 ATAAAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
12 1 0.04
13 9 0.35
14 15 0.58
15 1 0.04
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.35
Consensus pattern (14 bp):
AAATTTTAAGAATC
Found at i:13216347 original size:59 final size:58
Alignment explanation
Indices: 13216213--13216683 Score: 499
Period size: 59 Copynumber: 7.9 Consensus size: 58
13216203 TTTGTGCAGA
* * *
13216213 GAAAATTGATACTTTCAATTTTTCC-CTAAAAATATTCTTTT-AAAATTTTAATTTCGAG
1 GAAAATTGATACTTTCAACTTTTCCTC-AAAAATATT-TTTTGAAAATTTTATTTTCAAG
* *
13216271 AAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTGAAAACTTTGATTTTCAAG
1 GAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTGAAAA-TTTTATTTTCAAG
** *
13216330 GAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTG-AAATTTTATTTTAAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTTATTTTCAAG
*
13216387 AAAAATTGATATTGATACTTTCAACTTTTCCTCAAAAACCT-TTTTTTG-AAATTTTATTTT-AA
1 --GAA---A-ATTGATACTTTCAACTTTTCCTCAAAAA--TATTTTTTGAAAATTTTATTTTCAA
13216449 G
58 G
* *
13216450 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTGATTTTCAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAA-TTTTATTTTCAAG
* * * * *** *
13216509 AAAAATTTATACTTTCAAC-TTTCTTCAAAAACTCTTTTTTTTTTAATTTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTGAAAATTTTATTTTCAAG
* *
13216568 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAACTTTGATTTTAAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGAAAA-TTTTATTTTCAAG
* * *
13216628 GAAAATTGATACTTTCAACTTTTTCTCAAAAATTTATTTTTTTAAAAATTTATTTT
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAA--TATTTTTTGAAAATTTTATTTT
13216684 TTAAAAAATT
Statistics
Matches: 353, Mismatches: 38, Indels: 42
0.82 0.09 0.10
Matches are distributed among these distances:
55 1 0.00
56 7 0.02
57 45 0.13
58 60 0.17
59 106 0.30
60 69 0.20
61 12 0.03
62 3 0.01
63 31 0.09
64 19 0.05
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (58 bp):
GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTTATTTTCAAG
Found at i:13216523 original size:179 final size:174
Alignment explanation
Indices: 13216214--13216696 Score: 589
Period size: 179 Copynumber: 2.7 Consensus size: 174
13216204 TTGTGCAGAG
* * * ** *
13216214 AAAATTGATACTTTCAATTTTTCC-CTAAAAATATTCTTTTAAAATTTTAATTTCGAGAAAAATT
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAATTTT-ATTTTAAGGAAAATT
* * *
13216278 GATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAACTTTGATTTTCAAGGAAAATTGATACT
64 GATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTGATTTTCAAGAAAAATTTATACT
13216343 TTCAACTTTTCCTCAAAAAC-C-TTTTTTGAAATTTTATTTTAAAGAAA
129 TTCAAC-TTTCCTCAAAAACTCTTTTTTTGAAATTTTATTTTAAAG--A
**
13216390 AATTGATATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAATTTTATTTTAAGGAAAA
1 AA---A-ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAATTTTATTTTAAGGAAAA
13216455 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTGATTTTCAAGAAAAATTTATA
62 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTGATTTTCAAGAAAAATTTATA
* ** * *
13216520 CTTTCAACTTTCTTCAAAAACTCTTTTTTTTTTAATTTTATTTTTAAGG
127 CTTTCAACTTTCCTCAAAAACTC-TTTTTTTGAAATTTTATTTTAAAGA
*
13216569 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAACTTTGATTTTAAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTG-AAA-TTTTATTTT-AAGGAAAAT
* * * * **
13216634 TGATACTTTCAACTTTTTCTCAAAAATTTATTTTTTTAAAAATTT-ATTTTTTA-AAAAATTTAT
63 TGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTGAAAACTTTGATTTTCAAGAAAAATTTAT
13216697 TTTTAAGAAA
Statistics
Matches: 269, Mismatches: 25, Indels: 24
0.85 0.08 0.08
Matches are distributed among these distances:
175 36 0.13
176 6 0.02
177 8 0.03
178 55 0.20
179 90 0.33
180 53 0.20
181 21 0.08
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (174 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAATTTTATTTTAAGGAAAATTGA
TACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTGATTTTCAAGAAAAATTTATACTTT
CAACTTTCCTCAAAAACTCTTTTTTTGAAATTTTATTTTAAAGA
Found at i:13216683 original size:15 final size:16
Alignment explanation
Indices: 13216655--13216710 Score: 85
Period size: 16 Copynumber: 3.4 Consensus size: 16
13216645 ACTTTTTCTC
*
13216655 AAAAATTTATTTTTTT
1 AAAAATTTATTTTTTA
13216671 AAAAATTTATTTTTTA
1 AAAAATTTATTTTTTA
*
13216687 AAAAATTTATTTTTAA
1 AAAAATTTATTTTTTA
13216703 GAAAAATT
1 -AAAAATT
13216711 GATACTTTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
16 30 0.81
17 7 0.19
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
AAAAATTTATTTTTTA
Found at i:13216721 original size:76 final size:77
Alignment explanation
Indices: 13216595--13216748 Score: 222
Period size: 76 Copynumber: 2.0 Consensus size: 77
13216585 ACTTTTCCTC
* * * *
13216595 AAAAATATTTTTTTGAAAACTTTGATTTTAAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAA
1 AAAAATATTTTTTTAAAAAATTTGATTTTAAAGAAAAATTGATACTTTCAACTTTTTCCCAAAAA
*
13216660 TTTAT-TTTTTT
66 TATATATTTTTT
* *
13216671 AAAAATTTATTTTTTAAAAAATTT-ATTTTTAAGAAAAATTGATACTTTCAACTTTTTCCCAAAA
1 AAAAATAT-TTTTTTAAAAAATTTGATTTTAAAGAAAAATTGATACTTTCAACTTTTTCCCAAAA
13216735 ATATATATTTTTT
65 ATATATATTTTTT
13216748 A
1 A
13216749 TTTTTATTTA
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
76 49 0.71
77 20 0.29
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.48
Consensus pattern (77 bp):
AAAAATATTTTTTTAAAAAATTTGATTTTAAAGAAAAATTGATACTTTCAACTTTTTCCCAAAAA
TATATATTTTTT
Found at i:13216795 original size:30 final size:30
Alignment explanation
Indices: 13216761--13216817 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
13216751 TTTATTTAAA
* *
13216761 GAAAATAGAATAATAA-AACAAAATAAAAGT
1 GAAAATA-AATAAAAATAAAAAAATAAAAGT
13216791 GAAAATAAATAAAAATAAAAAAATAAA
1 GAAAATAAATAAAAATAAAAAAATAAA
13216818 GAAAAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (30 bp):
GAAAATAAATAAAAATAAAAAAATAAAAGT
Found at i:13216808 original size:6 final size:6
Alignment explanation
Indices: 13216780--13216857 Score: 58
Period size: 6 Copynumber: 13.7 Consensus size: 6
13216770 ATAATAAAAC
* * * *
13216780 AAAATA AAAGTG AAAAT- -AAATA AAAATA AAAA-A ATAAAGA AAAGT-
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA A-AAATA AAAATA
* *
13216825 AAAACA AAAATA AAAAT- AAAATA AAGATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
13216858 GAATATTAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
4 4 0.07
5 10 0.18
6 40 0.71
7 2 0.04
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:13216844 original size:17 final size:17
Alignment explanation
Indices: 13216762--13216857 Score: 79
Period size: 17 Copynumber: 5.6 Consensus size: 17
13216752 TTATTTAAAG
13216762 AAAATAGAATAATAAAAC-
1 AAAATA-AA-AATAAAACA
* *
13216780 AAAATAAAAGTGAAA-A
1 AAAATAAAAATAAAACA
* *
13216796 TAAATAAAAATAAAAAA
1 AAAATAAAAATAAAACA
* *
13216813 ATAAAGAAAAGTAAAACA
1 A-AAATAAAAATAAAACA
*
13216831 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAACA
*
13216848 AAGATAAAAA
1 AAAATAAAAA
13216858 GAATATTAAA
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
16 17 0.27
17 25 0.40
18 20 0.32
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (17 bp):
AAAATAAAAATAAAACA
Found at i:13216856 original size:22 final size:21
Alignment explanation
Indices: 13216772--13216935 Score: 70
Period size: 22 Copynumber: 7.6 Consensus size: 21
13216762 AAAATAGAAT
* *
13216772 AATAAAACAAAATAAAAGTGAA
1 AATAAAATAAAATAAAAAT-AA
*
13216794 AAT-AAATAAAAATAAAAAAATA
1 AATAAAAT-AAAATAAAAATA-A
* *
13216816 AAGAAAAGTAAAACAAAAATAAA
1 AATAAAA-TAAAATAAAAAT-AA
*
13216839 AATAAAATAAAGATAAAAAGAA
1 AATAAAATAAA-ATAAAAATAA
* * * *
13216861 TATTAAATAAACCTAATCTAATAA
1 AATAAAATAAA-ATAA--AAATAA
13216885 AAT-AAAT-AAATAAACAA-ATA
1 AATAAAATAAAATAAA-AATA-A
*
13216905 AAT-AAATAAATTAAAAA-AA
1 AATAAAATAAAATAAAAATAA
* *
13216924 AAGAAAAAAAAA
1 AATAAAATAAAA
13216936 ACCTGGAGCG
Statistics
Matches: 108, Mismatches: 22, Indels: 26
0.69 0.14 0.17
Matches are distributed among these distances:
19 4 0.04
20 19 0.18
21 13 0.12
22 35 0.32
23 29 0.27
24 8 0.07
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.17
Consensus pattern (21 bp):
AATAAAATAAAATAAAAATAA
Found at i:13216858 original size:35 final size:32
Alignment explanation
Indices: 13216762--13216858 Score: 88
Period size: 35 Copynumber: 2.8 Consensus size: 32
13216752 TTATTTAAAG
*
13216762 AAAATAGAATAATAAAACAAAAT-AAAAGTGAAAA
1 AAAATA-AA-AATAAAA-AAAATAAAAAGTAAAAA
* *
13216796 TAAATAAAAATAAAAAAATAAAGAAAAGTAAAACA
1 AAAATAAAAATAAAAAAA-ATA-AAAAGTAAAA-A
13216831 AAAATAAAAATAAAATAAAGATAAAAAG
1 AAAATAAAAATAAAA-AAA-ATAAAAAG
13216859 AATATTAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
31 3 0.06
32 8 0.15
33 2 0.04
34 14 0.27
35 20 0.38
36 5 0.10
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.14
Consensus pattern (32 bp):
AAAATAAAAATAAAAAAAATAAAAAGTAAAAA
Found at i:13216893 original size:4 final size:4
Alignment explanation
Indices: 13216884--13216915 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
13216874 TAATCTAATA
*
13216884 AAAT AAAT AAAT AAAC AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
13216916 TAAAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:13216905 original size:16 final size:16
Alignment explanation
Indices: 13216884--13216914 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
13216874 TAATCTAATA
13216884 AAATAAATAAATAAAC
1 AAATAAATAAATAAAC
13216900 AAATAAATAAATAAA
1 AAATAAATAAATAAA
13216915 TTAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
AAATAAATAAATAAAC
Found at i:13217422 original size:19 final size:19
Alignment explanation
Indices: 13217394--13217431 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
13217384 TGGCCGAAAT
*
13217394 TTTCGTCGAAAAATGCAAC
1 TTTCGACGAAAAATGCAAC
*
13217413 TTTCGACGAAAAATTCAAC
1 TTTCGACGAAAAATGCAAC
13217432 CGAAATCTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.26
Consensus pattern (19 bp):
TTTCGACGAAAAATGCAAC
Found at i:13217784 original size:18 final size:20
Alignment explanation
Indices: 13217763--13217820 Score: 59
Period size: 22 Copynumber: 2.9 Consensus size: 20
13217753 AAATCAAACG
13217763 AAAATAAAT-CAGATAAA-T
1 AAAATAAATACAGATAAATT
13217781 AAAA-AAATTAACAGATAAATT
1 AAAATAAA-T-ACAGATAAATT
13217802 AAAATTAAATAACAGATAA
1 AAAA-TAAAT-ACAGATAA
13217821 TTACATAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.09
18 5 0.15
20 8 0.24
21 5 0.15
22 10 0.29
23 3 0.09
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.22
Consensus pattern (20 bp):
AAAATAAATACAGATAAATT
Found at i:13217812 original size:44 final size:42
Alignment explanation
Indices: 13217728--13217843 Score: 108
Period size: 44 Copynumber: 2.7 Consensus size: 42
13217718 AATTTCCAGC
* *
13217728 CAGATAAATAAAAAAA-TAAAAGAAAAAATCAAACGAAAATAAA
1 CAGATAAATAAAAAAATTAACAG-AAAAATCAAAAGAAAAT-AA
* * **
13217771 TCAGATAAATAAAAAAATTAACAGATAAATTAAAATTAAATAA
1 -CAGATAAATAAAAAAATTAACAGAAAAATCAAAAGAAAATAA
* *
13217814 CAGATAATTACATAAATATTAACAGAAAAA
1 CAGATAAATA-A-AAAAATTAACAGAAAAA
13217844 AAGAGAAAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 9 0.15
43 3 0.05
44 43 0.72
45 5 0.08
ACGTcount: A:0.67, C:0.07, G:0.06, T:0.20
Consensus pattern (42 bp):
CAGATAAATAAAAAAATTAACAGAAAAATCAAAAGAAAATAA
Found at i:13217817 original size:22 final size:20
Alignment explanation
Indices: 13217728--13217839 Score: 75
Period size: 21 Copynumber: 5.2 Consensus size: 20
13217718 AATTTCCAGC
13217728 CAGATAAATAAAAAAA-TAA
1 CAGATAAATAAAAAAATTAA
* * *
13217747 AAGAAAAAATCAAACGAAAATAAA
1 CAG-ATAAAT-AAA--AAAATTAA
13217771 TCAGATAAATAAAAAAATTAA
1 -CAGATAAATAAAAAAATTAA
13217792 CAGATAAATTAAAATTAAA-TAA
1 CAGATAAA-TAAAA--AAATTAA
* *
13217814 CAGATAATTACATAAATATTAA
1 CAGATAAATA-A-AAAAATTAA
13217836 CAGA
1 CAGA
13217840 AAAAAAGAGA
Statistics
Matches: 73, Mismatches: 8, Indels: 21
0.72 0.08 0.21
Matches are distributed among these distances:
19 2 0.03
20 13 0.18
21 19 0.26
22 18 0.25
23 12 0.16
24 7 0.10
25 2 0.03
ACGTcount: A:0.66, C:0.07, G:0.06, T:0.21
Consensus pattern (20 bp):
CAGATAAATAAAAAAATTAA
Found at i:13218013 original size:6 final size:6
Alignment explanation
Indices: 13217950--13218007 Score: 55
Period size: 6 Copynumber: 9.2 Consensus size: 6
13217940 AAATAATACT
* *
13217950 AATAAA AATAAA AAT-AA AATACAA ATGTAAA ATACAAAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATA-AA A-ATAAA A-A-TAAA AATAAA AATAAA
13218001 AATAAA A
1 AATAAA A
13218008 TGAAAAAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 5 0.11
6 25 0.57
7 8 0.18
8 6 0.14
ACGTcount: A:0.78, C:0.03, G:0.02, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:13218185 original size:8 final size:8
Alignment explanation
Indices: 13218174--13218220 Score: 58
Period size: 8 Copynumber: 5.6 Consensus size: 8
13218164 AACATTTTCA
13218174 TTTTTTGT
1 TTTTTTGT
13218182 TTTTTTGTTT
1 TTTTTTG--T
*
13218192 TTTTTTAT
1 TTTTTTGT
13218200 TTTTTTGT
1 TTTTTTGT
*
13218208 TTTTCTGT
1 TTTTTTGT
13218216 TTTTT
1 TTTTT
13218221 GACCAAAGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 26 0.79
10 7 0.21
ACGTcount: A:0.02, C:0.02, G:0.09, T:0.87
Consensus pattern (8 bp):
TTTTTTGT
Found at i:13218197 original size:18 final size:18
Alignment explanation
Indices: 13218174--13218211 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
13218164 AACATTTTCA
*
13218174 TTTTTTGTTTTTTTGTTT
1 TTTTTTATTTTTTTGTTT
13218192 TTTTTTATTTTTTTGTTT
1 TTTTTTATTTTTTTGTTT
13218210 TT
1 TT
13218212 CTGTTTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.03, C:0.00, G:0.08, T:0.89
Consensus pattern (18 bp):
TTTTTTATTTTTTTGTTT
Found at i:13218322 original size:41 final size:41
Alignment explanation
Indices: 13218228--13218382 Score: 184
Period size: 42 Copynumber: 3.7 Consensus size: 41
13218218 TTTGACCAAA
* * * * *
13218228 GCTCCTATAAGCAGAGGCTCAACGACTTTGAAAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAA-GTAAATT
* * *
13218271 TCTCATCTAAACAGAGGTACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
13218312 GCTCCTCTAAACAAAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
* *
13218354 GCTTCTCTAAACAGAGGCACCATGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
13218383 TGCTCTAAAC
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
41 31 0.32
42 42 0.44
43 23 0.24
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.25
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:13218393 original size:27 final size:27
Alignment explanation
Indices: 13218358--13218421 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
13218348 TAAATTGCTT
*
13218358 CTCTAAACAGAGGCACCATGACTTTTG
1 CTCTAAACAGAGGCACCACGACTTTTG
13218385 CTCTAAACAGAGGCACCACGACTTTTG
1 CTCTAAACAGAGGCACCACGACTTTTG
13218412 CTCTAAACAG
1 CTCTAAACAG
13218422 CTCCTCTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (27 bp):
CTCTAAACAGAGGCACCACGACTTTTG
Found at i:13218584 original size:81 final size:79
Alignment explanation
Indices: 13218385--13218670 Score: 351
Period size: 81 Copynumber: 3.5 Consensus size: 79
13218375 ATGACTTTTG
*** **
13218385 CTCTAAACAGAGGCACCACGACTTTTG-CTCTAAACAGCTCCTCTAAACAGAGGCACCACGACTT
1 CTCTAAACAGAGGCACCACGAC-TTTGAAAGTAAATTGCTCCTCTAAACAGAGG--CCACGACTT
*
13218449 TAAAAAGTAAATTGCTC
63 TAGAAAGTAAATTGCTC
*
13218466 CTCTAAACAGAGGCACCACGACTTTGGAAGTAAATTGCTCCTCTAAACAGAGGCCACGACTTTAG
1 CTCTAAACAGAGGCACCACGACTTTGAAAGTAAATTGCTCCTCTAAACAGAGGCCACGACTTTAG
13218531 AAAGTAAATTGCTC
66 AAAGTAAATTGCTC
* * * *
13218545 CTCTAAACAGAGGCATCACGACTTTTGAAAAGTAAATTGCTCCTTTAAACAGAGACACCATGACT
1 CTCTAAACAGAGGCACCACGAC-TTTG-AAAGTAAATTGCTCCTCTAAACAGAG--GCCACGACT
13218610 TT-GAAAAGTAAATTGCTC
62 TTAG-AAAGTAAATTGCTC
* * *
13218628 CTTTAAACAGAGGCACCATGACTTTGGAAAGTAAATTACTCCT
1 CTCTAAACAGAGGCACCACGACTTT-GAAAGTAAATTGCTCCT
13218671 TGACAATCAT
Statistics
Matches: 183, Mismatches: 15, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
79 46 0.25
80 8 0.04
81 67 0.37
82 19 0.10
83 43 0.23
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (79 bp):
CTCTAAACAGAGGCACCACGACTTTGAAAGTAAATTGCTCCTCTAAACAGAGGCCACGACTTTAG
AAAGTAAATTGCTC
Found at i:13218671 original size:41 final size:41
Alignment explanation
Indices: 13218385--13218670 Score: 368
Period size: 41 Copynumber: 7.0 Consensus size: 41
13218375 ATGACTTTTG
*** **
13218385 CTCTAAACAGAGGCACCACGACTTTTG--CTCTAAACAGCTC
1 CTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTC
*
13218425 CTCTAAACAGAGGCACCACGACTTTAAAAAGTAAATTGCTC
1 CTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTC
*
13218466 CTCTAAACAGAGGCACCACGACTTTG-GAAGTAAATTGCTC
1 CTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTC
13218506 CTCTAAACAGAGG--CCACGACTTT-AGAAAGTAAATTGCTC
1 CTCTAAACAGAGGCACCACGACTTTGA-AAAGTAAATTGCTC
*
13218545 CTCTAAACAGAGGCATCACGACTTTTGAAAAGTAAATTGCTC
1 CTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTC
* * *
13218587 CTTTAAACAGAGACACCATGACTTTGAAAAGTAAATTGCTC
1 CTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTC
* * * *
13218628 CTTTAAACAGAGGCACCATGACTTTGGAAAGTAAATTACTC
1 CTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTC
13218669 CT
1 CT
13218671 TGACAATCAT
Statistics
Matches: 221, Mismatches: 17, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
38 10 0.05
39 29 0.13
40 48 0.22
41 98 0.44
42 35 0.16
43 1 0.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (41 bp):
CTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTC
Found at i:13219918 original size:12 final size:11
Alignment explanation
Indices: 13219900--13219941 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 11
13219890 TTTTTTCTCA
13219900 TTTTTTCATTC
1 TTTTTTCATTC
*
13219911 TTTCTTTCTTTC
1 TTT-TTTCATTC
*
13219923 TTTTTTC-TTT
1 TTTTTTCATTC
13219933 TTTTTTCAT
1 TTTTTTCAT
13219942 CATCATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 9 0.33
11 8 0.30
12 10 0.37
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTTCATTC
Found at i:13219936 original size:32 final size:32
Alignment explanation
Indices: 13219886--13219973 Score: 92
Period size: 32 Copynumber: 2.8 Consensus size: 32
13219876 TTTGAATATC
*
13219886 CTTT-TTTTTTCTCATTTTTTCATTCTTTC-TTT
1 CTTTCTTTTTTCTCATTTTTTCA-TC-ATCATTT
**
13219918 CTTTCTTTTTTCTTTTTTTTTCATCATCATTT
1 CTTTCTTTTTTCTCATTTTTTCATCATCATTT
* *
13219950 TTTTCTTTTTTCTCA-CTTTTCATC
1 CTTTCTTTTTTCTCATTTTTTCATC
13219974 CATTGTTGAT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
31 10 0.21
32 21 0.45
33 16 0.34
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (32 bp):
CTTTCTTTTTTCTCATTTTTTCATCATCATTT
Found at i:13219955 original size:36 final size:32
Alignment explanation
Indices: 13219886--13219960 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 32
13219876 TTTGAATATC
13219886 CTTTTTTTTTCTCATTTTTTCATTCTTTCTTT
1 CTTTTTTTTTCTCATTTTTTCATTCTTTCTTT
** *
13219918 CTTTCTTTTTTCTTTTTTTTTCATCATCATTTTTTT
1 CTTT-TTTTTTCTCATTTTTTCAT--TC-TTTCTTT
13219954 CTTTTTT
1 CTTTTTT
13219961 CTCACTTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
32 4 0.11
33 17 0.47
35 5 0.14
36 10 0.28
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (32 bp):
CTTTTTTTTTCTCATTTTTTCATTCTTTCTTT
Found at i:13224129 original size:60 final size:60
Alignment explanation
Indices: 13223863--13224262 Score: 426
Period size: 59 Copynumber: 6.7 Consensus size: 60
13223853 TTGTGCAGGG
* * * * * *
13223863 AAAATTGATACTTTCAATTTTTCC-CTAAAAA-TATTCTTTTGAAA-TTTTAATTTTGAGG
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAATTTTTTTTTTGAAACTTTTATTTTTAAGA
* * * *
13223921 AAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTGAAAACTTTGATTTTCAA-A
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTG-AAACTTTTATTTTTAAGA
* * * *
13223979 GAAAATTGATACTTTCAACTTTTCCTCAAAAA--TATTTTTTGAAATTTTTGATTTTTCAGG
1 -AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGAAACTTTT-ATTTTTAAGA
13224039 AAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTTGAAA-TTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT--TTTTTTTTTGAAACTTTTATTTTTAAGA
* * * * *
13224100 AAAATTGATATTTTTAACTTTT-CTCAAAAAATATTTTTTTTGGAAACTTTGATTTTAAAGA
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAAT-TTTTTTTTTGAAACTTTTATTTTTAAGA
* *
13224161 AAAATTGATACTTTCAATTTTTCCTCAAAAATTTATTTTTTTGAAA-ATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTT-TTTTTTTGAAACTTTTATTTTTAAGA
* *
13224221 AAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTTT
13224263 ATTTTTATTT
Statistics
Matches: 293, Mismatches: 34, Indels: 28
0.83 0.10 0.08
Matches are distributed among these distances:
57 6 0.02
58 37 0.13
59 85 0.29
60 65 0.22
61 82 0.28
62 7 0.02
63 11 0.04
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.47
Consensus pattern (60 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGAAACTTTTATTTTTAAGA
Found at i:13224207 original size:17 final size:17
Alignment explanation
Indices: 13224187--13224226 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
13224177 ATTTTTCCTC
**
13224187 AAAAATTTATTTTTTTG
1 AAAAATTTATTTTTAAG
13224204 -AAAATTTATTTTTAAG
1 AAAAATTTATTTTTAAG
13224220 AAAAATT
1 AAAAATT
13224227 GATACTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (17 bp):
AAAAATTTATTTTTAAG
Found at i:13224298 original size:12 final size:12
Alignment explanation
Indices: 13224277--13224424 Score: 52
Period size: 12 Copynumber: 12.6 Consensus size: 12
13224267 TTATTTAAAG
*
13224277 AAATAGAATAAT
1 AAATAAAATAAT
13224289 AAATAAAATAA-
1 AAATAAAATAAT
* *
13224300 AAGT-GAA-AAT
1 AAATAAAATAAT
13224310 AAATAAAAATAA-
1 AAAT-AAAATAAT
13224322 AAATAAAAT-A-
1 AAATAAAATAAT
*
13224332 AAA-AAAGTAA-
1 AAATAAAATAAT
13224342 AACA-AAAATAA-
1 AA-ATAAAATAAT
13224353 AAATAAAATAAAGAT
1 AAATAAAAT--A-AT
*
13224368 AAA-AAGAATATT
1 AAATAA-AATAAT
*
13224380 AAATAAACCTAAT
1 AAATAAA-ATAAT
*
13224393 CTAATAAACA-AAT
1 -AAATAAA-ATAAT
13224406 AAATAAACA-AAT
1 AAATAAA-ATAAT
13224418 AAATAAA
1 AAATAAA
13224425 TAAATTCAAA
Statistics
Matches: 108, Mismatches: 13, Indels: 30
0.72 0.09 0.20
Matches are distributed among these distances:
9 6 0.06
10 13 0.12
11 22 0.20
12 39 0.36
13 12 0.11
14 10 0.09
15 6 0.06
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (12 bp):
AAATAAAATAAT
Found at i:13224307 original size:28 final size:28
Alignment explanation
Indices: 13224277--13224364 Score: 89
Period size: 25 Copynumber: 3.2 Consensus size: 28
13224267 TTATTTAAAG
13224277 AAATAGAATAATAAAT-AAAATAAAAGTGA
1 AAATA-AATAA-AAATAAAAATAAAAGTGA
13224306 AAATAAATAAAAATAAAAATAAAA-T-A
1 AAATAAATAAAAATAAAAATAAAAGTGA
* *
13224332 AAA-AAAGT-AAAACAAAAATAAAAAT-A
1 AAATAAA-TAAAAATAAAAATAAAAGTGA
13224358 AAATAAA
1 AAATAAA
13224365 GATAAAAAGA
Statistics
Matches: 54, Mismatches: 1, Indels: 10
0.83 0.02 0.15
Matches are distributed among these distances:
25 17 0.31
26 10 0.19
27 8 0.15
28 14 0.26
29 5 0.09
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (28 bp):
AAATAAATAAAAATAAAAATAAAAGTGA
Found at i:13224310 original size:21 final size:20
Alignment explanation
Indices: 13224286--13224371 Score: 86
Period size: 22 Copynumber: 4.1 Consensus size: 20
13224276 GAAATAGAAT
*
13224286 AATAAATAAAATAAAAGTGAA
1 AATAAATAAAATAAAAAT-AA
13224307 AATAAATAAAAATAAAAATAA
1 AATAAAT-AAAATAAAAATAA
13224328 AATAAA-AAAAGTAAAACA-AA
1 AATAAATAAAA-TAAAA-ATAA
*
13224348 AATAAAAATAAAATAAAGATAA
1 AAT--AAATAAAATAAAAATAA
13224370 AA
1 AA
13224372 AGAATATTAA
Statistics
Matches: 56, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
19 4 0.07
20 10 0.18
21 17 0.30
22 21 0.38
23 4 0.07
ACGTcount: A:0.78, C:0.01, G:0.05, T:0.16
Consensus pattern (20 bp):
AATAAATAAAATAAAAATAA
Found at i:13224315 original size:16 final size:17
Alignment explanation
Indices: 13224283--13224372 Score: 98
Period size: 17 Copynumber: 5.5 Consensus size: 17
13224273 AAAGAAATAG
13224283 AATAATAAATAAAATAAA
1 AATAA-AAATAAAATAAA
* *
13224301 AGTGAAAAT-AAATAAA
1 AATAAAAATAAAATAAA
13224317 AATAAAAATAAAAT--A
1 AATAAAAATAAAATAAA
* *
13224332 AA-AAAAGTAAAACAAA
1 AATAAAAATAAAATAAA
13224348 AATAAAAATAAAATAAA
1 AATAAAAATAAAATAAA
*
13224365 GATAAAAA
1 AATAAAAA
13224373 GAATATTAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
14 9 0.15
15 3 0.05
16 17 0.29
17 27 0.46
18 3 0.05
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (17 bp):
AATAAAAATAAAATAAA
Found at i:13224321 original size:6 final size:6
Alignment explanation
Indices: 13224283--13224372 Score: 73
Period size: 6 Copynumber: 15.3 Consensus size: 6
13224273 AAAGAAATAG
* *
13224283 AATAATA AAT-AA AATAAA AGTGAA AAT--A AATAAA AATAAA AAT-AA
1 AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * *
13224328 AATAAA AAAAGTAA AACAAA AATAAA AAT-AA AATAAA GATAAA AA
1 AATAAA AATA--AA AATAAA AATAAA AATAAA AATAAA AATAAA AA
13224373 GAATATTAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
4 4 0.06
5 14 0.21
6 42 0.62
7 3 0.04
8 5 0.07
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:13224343 original size:42 final size:42
Alignment explanation
Indices: 13224286--13224371 Score: 104
Period size: 42 Copynumber: 2.0 Consensus size: 42
13224276 GAAATAGAAT
** *
13224286 AATAAATAAAATAAAAGTGAAAATAAATA-AAAATAAAAATAA
1 AATAAATAAAATAAAA-CAAAAATAAAAATAAAATAAAAATAA
*
13224328 AATAAA-AAAAGTAAAACAAAAATAAAAATAAAATAAAGATAA
1 AATAAATAAAA-TAAAACAAAAATAAAAATAAAATAAAAATAA
13224370 AA
1 AA
13224372 AGAATATTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
41 13 0.34
42 25 0.66
ACGTcount: A:0.78, C:0.01, G:0.05, T:0.16
Consensus pattern (42 bp):
AATAAATAAAATAAAACAAAAATAAAAATAAAATAAAAATAA
Found at i:13224349 original size:31 final size:31
Alignment explanation
Indices: 13224283--13224364 Score: 103
Period size: 31 Copynumber: 2.5 Consensus size: 31
13224273 AAAGAAATAG
*
13224283 AATAATAAATAAAATAAAAGTGAAAATAAATAAA
1 AATAA-AAATAAAATAAAA--GAAAATAAACAAA
*
13224317 AATAAAAATAAAATAAAA-AAAGTAAAACAAA
1 AATAAAAATAAAATAAAAGAAAAT-AAACAAA
13224348 AATAAAAATAAAATAAA
1 AATAAAAATAAAATAAA
13224365 GATAAAAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
30 4 0.09
31 23 0.51
33 13 0.29
34 5 0.11
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (31 bp):
AATAAAAATAAAATAAAAGAAAATAAACAAA
Found at i:13224369 original size:17 final size:16
Alignment explanation
Indices: 13224277--13224386 Score: 91
Period size: 17 Copynumber: 6.8 Consensus size: 16
13224267 TTATTTAAAG
*
13224277 AAATAGAATAATAAATA
1 AAATAAAATAA-AAATA
*
13224294 AAATAAAAGTGAAAAT-
1 AAATAAAA-TAAAAATA
13224310 AAATAAAAATAAAAATA
1 AAAT-AAAATAAAAATA
*
13224327 AAAT-AAA-AAAAGTA
1 AAATAAAATAAAAATA
*
13224341 AAACAAAAATAAAAATA
1 AAA-TAAAATAAAAATA
*
13224358 AAATAAAGATAAAAAGA
1 AAATAAA-ATAAAAATA
* *
13224375 ATATTAAATAAA
1 AAATAAAATAAA
13224387 CCTAATCTAA
Statistics
Matches: 76, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
14 9 0.12
15 3 0.04
16 21 0.28
17 41 0.54
18 2 0.03
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.18
Consensus pattern (16 bp):
AAATAAAATAAAAATA
Found at i:13224411 original size:4 final size:4
Alignment explanation
Indices: 13224395--13224429 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
13224385 AACCTAATCT
* *
13224395 AATA AACA AATA AATA AACA AATA AATA AATA AAT
1 AATA AATA AATA AATA AATA AATA AATA AATA AAT
13224430 TCAAAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:13224429 original size:12 final size:12
Alignment explanation
Indices: 13224395--13224429 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
13224385 AACCTAATCT
13224395 AATAAACAAATA
1 AATAAACAAATA
13224407 AATAAACAAATA
1 AATAAACAAATA
*
13224419 AATAAATAAAT
1 AATAAACAAAT
13224430 TCAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (12 bp):
AATAAACAAATA
Found at i:13225280 original size:11 final size:12
Alignment explanation
Indices: 13225251--13225279 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
13225241 GATAAATAAA
13225251 AAAAAATCAAAC
1 AAAAAATCAAAC
13225263 AAAAAATCAAAC
1 AAAAAATCAAAC
13225275 AAAAA
1 AAAAA
13225280 TAAATCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.79, C:0.14, G:0.00, T:0.07
Consensus pattern (12 bp):
AAAAAATCAAAC
Found at i:13225484 original size:6 final size:6
Alignment explanation
Indices: 13225475--13225528 Score: 60
Period size: 6 Copynumber: 9.2 Consensus size: 6
13225465 AAATAATACT
*
13225475 AATAAA AATAAA AAT-AA AATAAA AATGTAA AATACAA AA-AAA AAT-AA
1 AATAAA AATAAA AATAAA AATAAA AAT-AAA AATA-AA AATAAA AATAAA
13225522 AATAAA A
1 AATAAA A
13225529 TGAAAAAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
5 14 0.34
6 18 0.44
7 9 0.22
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:13225497 original size:17 final size:16
Alignment explanation
Indices: 13225475--13225535 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 16
13225465 AAATAATACT
13225475 AATAAAAATAAAAATAA
1 AATAAAAAT-AAAATAA
13225492 AATAAAAATGTAAAATACA
1 AATAAAAA--TAAAATA-A
*
13225511 AAAAAAAATAAAATAA
1 AATAAAAATAAAATAA
13225527 AATGAAAAA
1 AAT-AAAAA
13225536 AAGAATATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
16 3 0.08
17 20 0.53
18 6 0.16
19 9 0.24
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (16 bp):
AATAAAAATAAAATAA
Found at i:13225717 original size:45 final size:45
Alignment explanation
Indices: 13225668--13225753 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
13225658 CATTTAATGC
*
13225668 ATTGTTTTTATTAAATTCAATAAAACACAATATATTAATTATACT
1 ATTGTTTTTAATAAATTCAATAAAACACAATATATTAATTATACT
* * *
13225713 ATTGTTTTTAATAAATTCAATAGAACATAATGTATTAATTA
1 ATTGTTTTTAATAAATTCAATAAAACACAATATATTAATTA
13225754 CACTTTTCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (45 bp):
ATTGTTTTTAATAAATTCAATAAAACACAATATATTAATTATACT
Found at i:13226548 original size:21 final size:21
Alignment explanation
Indices: 13226522--13226566 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
13226512 TTTATTCGAT
13226522 AATTTTAACATATGCTCTAAC
1 AATTTTAACATATGCTCTAAC
13226543 AATTTTAACATATGCTCTAAC
1 AATTTTAACATATGCTCTAAC
13226564 AAT
1 AAT
13226567 GAAATCGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (21 bp):
AATTTTAACATATGCTCTAAC
Done.