Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 74 of 125
Found at i:14874476 original size:11 final size:10
Alignment explanation
Indices: 14874450--14874481 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
14874440 TGCATTTTCA
14874450 TTTTCATTTT
1 TTTTCATTTT
14874460 TTTTCATTTT
1 TTTTCATTTT
14874470 TTCTTCATTTT
1 TT-TTCATTTT
14874481 T
1 T
14874482 CCATATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTCATTTT
Found at i:14875767 original size:131 final size:131
Alignment explanation
Indices: 14875533--14875907 Score: 554
Period size: 131 Copynumber: 2.9 Consensus size: 131
14875523 GATAAAAAAA
** * *
14875533 ATGTATATACAAATACATGTATGCAATACATAGTAAAAATAAGAATTCATATTCAAAACTATGTA
1 ATGTATATACAAATACATGTATGCAATACATAGCGAAAATAAAAATTCATATCCAAAACTATGTA
* * ***
14875598 CAAAACTAAAAAGGCAAAGATTGCCCCAAACAAATGAAATAATGTA-ATACAAAGATGTTTACAT
66 CAAAATTGAAAAGGCAAAGATTTTTCCAAACAAATGAAATAATGTACATACAAAGATG-TTACAT
*
14875662 TG
130 GG
* * * *
14875664 ATGTATATTCAAATACATGTACGCAATACATAGCGAAAACAAAAATTTATATCCAAAACTATGTA
1 ATGTATATACAAATACATGTATGCAATACATAGCGAAAATAAAAATTCATATCCAAAACTATGTA
* *
14875729 TAAAATTGAAAAGGCAAAGATTTTTCCAAACAAATGAAATAATGTACATATAAAGATGTTACATG
66 CAAAATTGAAAAGGCAAAGATTTTTCCAAACAAATGAAATAATGTACATACAAAGATGTTACATG
14875794 G
131 G
* * *
14875795 ATGTATACACAAATAAATGTATGCAACACATAGCGAAAATAAAAATTCATATCCAAAACTATGTA
1 ATGTATATACAAATACATGTATGCAATACATAGCGAAAATAAAAATTCATATCCAAAACTATGTA
*
14875860 CAAAATTGAAAAGGCAAAGATTTTTCCAAACAAATGAAATAATCTACA
66 CAAAATTGAAAAGGCAAAGATTTTTCCAAACAAATGAAATAATGTACA
14875908 AAGATGTTTG
Statistics
Matches: 218, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
131 208 0.95
132 10 0.05
ACGTcount: A:0.50, C:0.13, G:0.11, T:0.26
Consensus pattern (131 bp):
ATGTATATACAAATACATGTATGCAATACATAGCGAAAATAAAAATTCATATCCAAAACTATGTA
CAAAATTGAAAAGGCAAAGATTTTTCCAAACAAATGAAATAATGTACATACAAAGATGTTACATG
G
Found at i:14877448 original size:35 final size:35
Alignment explanation
Indices: 14877357--14877469 Score: 124
Period size: 34 Copynumber: 3.3 Consensus size: 35
14877347 CATACAATAA
* * * *
14877357 ATCATGC-AATAAATATAAAATTATACCAAAAATT
1 ATCATGCAAATATATATAAAATCATGCAAAAAATT
*
14877391 ATCATGC-AATATATATAAAATCATGTAAAAAATT
1 ATCATGCAAATATATATAAAATCATGCAAAAAATT
**
14877425 ATCATGCAAATATAT-TAATAATCATGCAATTAATT
1 ATCATGCAAATATATATAA-AATCATGCAAAAAATT
14877460 ATTCATGCAA
1 A-TCATGCAA
14877470 TCACACAAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
34 39 0.57
35 21 0.31
36 8 0.12
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.33
Consensus pattern (35 bp):
ATCATGCAAATATATATAAAATCATGCAAAAAATT
Found at i:14877523 original size:24 final size:24
Alignment explanation
Indices: 14877432--14877525 Score: 93
Period size: 25 Copynumber: 3.9 Consensus size: 24
14877422 ATTATCATGC
*
14877432 AAATATATTAATAATCATG-CAAT
1 AAATATATTAATAATCATGTAAAT
* * ***
14877455 TAAT-TATTCATGCAATCACACAAAT
1 AAATATATTAAT--AATCATGTAAAT
14877480 AAATATATTAGATAATCATGTAAAT
1 AAATATATTA-ATAATCATGTAAAT
14877505 AAATATATTAATAATCATGTA
1 AAATATATTAATAATCATGTA
14877526 GAAATTATGC
Statistics
Matches: 56, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
22 6 0.11
23 3 0.05
24 16 0.29
25 25 0.45
26 4 0.07
27 2 0.04
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.35
Consensus pattern (24 bp):
AAATATATTAATAATCATGTAAAT
Found at i:14879259 original size:6 final size:6
Alignment explanation
Indices: 14879250--14879347 Score: 83
Period size: 6 Copynumber: 16.7 Consensus size: 6
14879240 AACTAAAGTT
* * * * * *
14879250 AAATTA AAATTA A-ATCA AAATTA ACATTA AAATC- AAATCA AAATCC
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
* * * * *
14879296 AAATCC AAATCC AAATCA AAATCA AAATCA AAATTA CAATCA AAATTA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
14879344 AAAT
1 AAAT
14879348 TTATAGGTTT
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
5 9 0.12
6 69 0.88
ACGTcount: A:0.61, C:0.15, G:0.00, T:0.23
Consensus pattern (6 bp):
AAATCA
Found at i:14879262 original size:11 final size:11
Alignment explanation
Indices: 14879243--14879293 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
14879233 TGACCAAAAC
*
14879243 TAAAGTTAAAT
1 TAAAATTAAAT
14879254 TAAAATTAAAT
1 TAAAATTAAAT
*
14879265 CAAAATTAACAT
1 TAAAATTAA-AT
*
14879277 TAAAATCAAAT
1 TAAAATTAAAT
*
14879288 CAAAAT
1 TAAAAT
14879294 CCAAATCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
11 25 0.74
12 9 0.26
ACGTcount: A:0.61, C:0.08, G:0.02, T:0.29
Consensus pattern (11 bp):
TAAAATTAAAT
Found at i:14879284 original size:18 final size:18
Alignment explanation
Indices: 14879250--14879348 Score: 94
Period size: 18 Copynumber: 5.6 Consensus size: 18
14879240 AACTAAAGTT
*
14879250 AAATTAAAATT-AAATCA
1 AAATCAAAATTAAAATCA
* *
14879267 AAATTAACATTAAAATC-
1 AAATCAAAATTAAAATCA
** *
14879284 AAATCAAAATCCAAATCC
1 AAATCAAAATTAAAATCA
* *
14879302 AAATCCAAATCAAAATCA
1 AAATCAAAATTAAAATCA
*
14879320 AAATCAAAATTACAATCA
1 AAATCAAAATTAAAATCA
*
14879338 AAATTAAAATT
1 AAATCAAAATT
14879349 TATAGGTTTT
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
17 23 0.34
18 45 0.66
ACGTcount: A:0.61, C:0.15, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATCAAAATTAAAATCA
Found at i:14879348 original size:6 final size:6
Alignment explanation
Indices: 14879261--14879347 Score: 86
Period size: 6 Copynumber: 14.7 Consensus size: 6
14879251 AATTAAAATT
* * * * * *
14879261 AAATCA AAATTA ACATTA AAATC- AAATCA AAATCC AAATCC AAATCC
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
* * *
14879308 AAATCA AAATCA AAATCA AAATTA CAATCA AAATTA AAAT
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAAT
14879348 TTATAGGTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
5 5 0.07
6 64 0.93
ACGTcount: A:0.61, C:0.17, G:0.00, T:0.22
Consensus pattern (6 bp):
AAATCA
Found at i:14881334 original size:35 final size:35
Alignment explanation
Indices: 14881288--14881367 Score: 106
Period size: 35 Copynumber: 2.3 Consensus size: 35
14881278 ATTTTGAGGA
* *
14881288 ATTAGAGGTTGTTACCTTAGCCTGAAAAGGTAGGG
1 ATTAGAGGTTGTTACCTTAGCCTAAAAAGATAGGG
* *
14881323 ATTAGAGGTTGTTATCTTAGCGTAAAAAGATAGGG
1 ATTAGAGGTTGTTACCTTAGCCTAAAAAGATAGGG
*
14881358 AGTGAGAGGT
1 A-TTAGAGGT
14881368 AGCTATCTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
35 32 0.82
36 7 0.18
ACGTcount: A:0.31, C:0.07, G:0.33, T:0.29
Consensus pattern (35 bp):
ATTAGAGGTTGTTACCTTAGCCTAAAAAGATAGGG
Found at i:14881375 original size:36 final size:35
Alignment explanation
Indices: 14881303--14881395 Score: 89
Period size: 36 Copynumber: 2.6 Consensus size: 35
14881293 AGGTTGTTAC
* * * * *
14881303 CTTAGCCTGAAAAGGTAGGGATTAGAGGTTGTTAT
1 CTTAGCCTAAAAAGATAGGGATGAGAGGTAGCTAT
*
14881338 CTTAGCGTAAAAAGATAGGGAGTGAGAGGTAGCTAT
1 CTTAGCCTAAAAAGATAGGGA-TGAGAGGTAGCTAT
**
14881374 CTT-GTCCTTGAAAGATAGGGAT
1 CTTAG-CCTAAAAAGATAGGGAT
14881396 TGTATTTTCC
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
35 20 0.43
36 27 0.57
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (35 bp):
CTTAGCCTAAAAAGATAGGGATGAGAGGTAGCTAT
Found at i:14883381 original size:72 final size:72
Alignment explanation
Indices: 14883264--14883448 Score: 165
Period size: 73 Copynumber: 2.6 Consensus size: 72
14883254 ATCACCCCCT
* * * * * * ** *
14883264 TGAACTAATTAATCCCCTCAAGGAAGGGATCGATCGGGTAATGC-TTGCAAGGTGTGAATTGGCT
1 TGAACCAATCAATCCCCTCATGGAAGAGATCGATCAGGTAATGCTTTCCAA-GCATGAAATGGCT
*** *
14883328 TTTAAAGG
65 AGCAAAAG
* ** *
14883336 TGAACCAATCAATCCCCTCATGGAAGAGATCGATCATGTCTTGCTTTTCCAAGCATGAAATGGGT
1 TGAACCAATCAATCCCCTCATGGAAGAGATCGATCAGGTAATGC-TTTCCAAGCATGAAATGGCT
14883401 AGCAAAAG
65 AGCAAAAG
* * *
14883409 TGAACCAATCGATCCCCTCATGGAAGAGATCAATCGGGTA
1 TGAACCAATCAATCCCCTCATGGAAGAGATCGATCAGGTA
14883449 TGCCTTAGAA
Statistics
Matches: 89, Mismatches: 22, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
72 36 0.40
73 48 0.54
74 5 0.06
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (72 bp):
TGAACCAATCAATCCCCTCATGGAAGAGATCGATCAGGTAATGCTTTCCAAGCATGAAATGGCTA
GCAAAAG
Found at i:14886862 original size:21 final size:21
Alignment explanation
Indices: 14886814--14886860 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
14886804 TTACCCGATC
*
14886814 GATCCCTTGCTTGAGGGGATT
1 GATCCCTTGCCTGAGGGGATT
*
14886835 GATCCCTTGCCTG-GGTGATT
1 GATCCCTTGCCTGAGGGGATT
14886855 GATCCC
1 GATCCC
14886861 CTATGTGGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.13, C:0.26, G:0.30, T:0.32
Consensus pattern (21 bp):
GATCCCTTGCCTGAGGGGATT
Found at i:14896011 original size:17 final size:17
Alignment explanation
Indices: 14895989--14896023 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14895979 AGGACAAGTA
14895989 TGTTTTTATAT-TTTTGT
1 TGTTTTT-TATGTTTTGT
14896006 TGTTTTTTATGTTTTGT
1 TGTTTTTTATGTTTTGT
14896023 T
1 T
14896024 AGGGATGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.09, C:0.00, G:0.14, T:0.77
Consensus pattern (17 bp):
TGTTTTTTATGTTTTGT
Found at i:14905100 original size:23 final size:23
Alignment explanation
Indices: 14905073--14905116 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
14905063 TCTTGTTTAC
14905073 AATC-TTTAATTCTTTTACTTTGA
1 AATCTTTTAATTC-TTTACTTTGA
14905096 AATCTTTTAATTCTTTACTTT
1 AATCTTTTAATTCTTTACTTT
14905117 AGGATTAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.25, C:0.14, G:0.02, T:0.59
Consensus pattern (23 bp):
AATCTTTTAATTCTTTACTTTGA
Found at i:14908198 original size:6 final size:6
Alignment explanation
Indices: 14908189--14908223 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
14908179 CATTAACATT
14908189 AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT
14908224 TACAATAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:14908611 original size:38 final size:37
Alignment explanation
Indices: 14908517--14908619 Score: 120
Period size: 38 Copynumber: 2.8 Consensus size: 37
14908507 AATGATCACC
* *
14908517 CATAATTGAGGCTTAAAACTTTAAAT-AAATGCTTCT
1 CATAATTGAGGCTTGAAACTTTAAATCAAATACTTCT
* * * *
14908553 CACAAATAAGACTTGAAACTTTAAATCAAATACTATCT
1 CATAATTGAGGCTTGAAACTTTAAATCAAATACT-TCT
*
14908591 CATAATTGAGGCTTGGAACTTTAAA-CAAA
1 CATAATTGAGGCTTGAAACTTTAAATCAAA
14908620 AAAATCTAAA
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
36 21 0.39
37 10 0.19
38 23 0.43
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.31
Consensus pattern (37 bp):
CATAATTGAGGCTTGAAACTTTAAATCAAATACTTCT
Found at i:14909515 original size:164 final size:162
Alignment explanation
Indices: 14909189--14909583 Score: 454
Period size: 164 Copynumber: 2.4 Consensus size: 162
14909179 TTTGGAGATT
* * * * *
14909189 TTACATATCTCGAAACTAAAACAGATTCAGCTCATAAGACCTATAAATCTTGCTTGAAGAACTTA
1 TTACAAATCTCGAAACTAAAACAGATTCAGCTCAAAAGACTTACAAATCTTGCCTGAAGAACTTA
* * * *
14909254 GAGATTATGCTTGGAGATCTTATAAATCTTAAAACAAATTCAGCTCGAAAGATTTATGAATCTTA
66 GAGACTATGCTCGGAGATCTTACAAATCTCAAAACAAATTCAGCTCGAAAGATTTATGAATCTTA
*** * * * *
14909319 TCAGGCGGATTTAGAGATTATATGCAGAGGGC
131 TCAGAAAGACTTAAAGACTATATCCAGAGGGC
* * * * *
14909351 TTACAAATCTC-AATATTAAAACAAATTCAACTCAAAAGACTTACAAATCTTGCCTAAAAAACTT
1 TTACAAATCTCGAA-ACTAAAACAGATTCAGCTCAAAAGACTTACAAATCTTGCCTGAAGAACTT
* *
14909415 AGAGACTATG-TCCGGA-AGTCTTACAAATCTCAAAACTATAATTTAGCTTGAAAGATTTATGAA
65 AGAGACTATGCT-CGGAGA-TCTTACAAATCTCAAAAC-A-AATTCAGCTCGAAAGATTTATGAA
** *
14909478 TCTTATCTTAAAGACTTAAAGACTATATCCGGAGGGC
126 TCTTATCAGAAAGACTTAAAGACTATATCCAGAGGGC
* * * *
14909515 TTACAAATCTCGAAACTAAAATAGATTCAGTTCGAAAGACTTACAAATCTTGCCTGAAGGACTTA
1 TTACAAATCTCGAAACTAAAACAGATTCAGCTCAAAAGACTTACAAATCTTGCCTGAAGAACTTA
14909580 GAGA
66 GAGA
14909584 TTGCACAAAG
Statistics
Matches: 192, Mismatches: 35, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
161 4 0.02
162 79 0.41
163 1 0.01
164 106 0.55
165 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (162 bp):
TTACAAATCTCGAAACTAAAACAGATTCAGCTCAAAAGACTTACAAATCTTGCCTGAAGAACTTA
GAGACTATGCTCGGAGATCTTACAAATCTCAAAACAAATTCAGCTCGAAAGATTTATGAATCTTA
TCAGAAAGACTTAAAGACTATATCCAGAGGGC
Found at i:14914793 original size:104 final size:104
Alignment explanation
Indices: 14914595--14914801 Score: 231
Period size: 104 Copynumber: 2.0 Consensus size: 104
14914585 TTTCATGATT
* * * *
14914595 TTTGGTGTATTTAAAATCATAATAGTACCCCACGAAGTGTAAAATTACTAAAATACCCTTTAGAG
1 TTTGGTGCATTTAAAATCATAATAATACCCCACGAAGTGCAAAAATACTAAAATACCCTTTAGAG
* * **
14914660 GGTATTTTTGTACTTTGGTTTTTTGAGCTCTA-ATTTTTC
66 GGTATTTTTGTAATTTGATTTTTCAAGCTC-AGATTTTTC
* * * * * *
14914699 TTTGGTGCATTTGAAATCATAGTAATATCCTAGGAAGTGCAAAAATACTAAAATATCCTTTA-AG
1 TTTGGTGCATTTAAAATCATAATAATACCCCACGAAGTGCAAAAATACTAAAATACCCTTTAGAG
*
14914763 AGGT-TTTTTTTAATTTGATATTTTCAAGCTCAGATTTTT
66 -GGTATTTTTGTAATTTGAT-TTTTCAAGCTCAGATTTTT
14914802 GAGAAACCTT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
103 15 0.18
104 70 0.82
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (104 bp):
TTTGGTGCATTTAAAATCATAATAATACCCCACGAAGTGCAAAAATACTAAAATACCCTTTAGAG
GGTATTTTTGTAATTTGATTTTTCAAGCTCAGATTTTTC
Found at i:14915041 original size:145 final size:144
Alignment explanation
Indices: 14914699--14915149 Score: 403
Period size: 145 Copynumber: 3.1 Consensus size: 144
14914689 CTAATTTTTC
* * *
14914699 TTTGGTGCATTTGAAATCATAGTAATATCCTAG-GAAGTGCAAAAATACTAAAATATCCTTTAAG
1 TTTGGTGCATTTGAAATCATAGTAATA-CCTCGAGAAGTGTAAAAATACTAAAATACCCTTT-AG
* ** * * * * *
14914763 AGGT-TTTTTTTAATTTGATATTTTCAAGC-TCAGATTTTTGAGAAACCTTTTAGATCTCAATTT
64 GGGTATTTTCATAATTTGATCTTTCCAAGCTTGA-ATTTTTGTGAAACATTTTAGATCTCAATTT
* *
14914826 TATAATATTTCATAATT
128 CATAATATTTCATGATT
* * * * * * **
14914843 TTTGGTGTATTTGAAATTATAGCAATACC-CTGAAAAATATAAATTTACTAAAATACCCTTTAGG
1 TTTGGTGCATTTGAAATCATAGTAATACCTC-GAGAAGTGTAAAAATACTAAAATACCCTTTA-G
* * *
14914907 GGGTATTTTCATAATTTGATCTTCCCAAGCTTGAATTTTTGTGAAACATTTTGGATCTTAATTTC
64 GGGTATTTTCATAATTTGATCTTTCCAAGCTTGAATTTTTGTGAAACATTTTAGATCTCAATTTC
*
14914972 ATAATATTTTATGATT
129 ATAATATTTCATGATT
* * * ** * * *
14914988 TTTGGTGCATTTGAAATCACAGTACTACCTCGAGAAGTGTGAAGGTACCAAAATACCCCTATAAG
1 TTTGGTGCATTTGAAATCATAGTAATACCTCGAGAAGTGTAAAAATACTAAAATA-CCCTTTAGG
* * * * * * **
14915053 GGTATTTTCGTAAGTTGACCTTTCTAAGCTCGGATTTTCATGAAA-ATTTTCAGATCTCAA-TTC
65 GGTATTTTCATAATTTGATCTTTCCAAGCTTGAATTTTTGTGAAACATTTT-AGATCTCAATTTC
14915116 TATAATATTTCATGATT
129 -ATAATATTTCATGATT
*
14915133 TTTGGTGC-TTTAAAATC
1 TTTGGTGCATTTGAAATC
14915150 TCAAAAATGA
Statistics
Matches: 246, Mismatches: 52, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
143 4 0.02
144 65 0.26
145 168 0.68
146 9 0.04
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (144 bp):
TTTGGTGCATTTGAAATCATAGTAATACCTCGAGAAGTGTAAAAATACTAAAATACCCTTTAGGG
GTATTTTCATAATTTGATCTTTCCAAGCTTGAATTTTTGTGAAACATTTTAGATCTCAATTTCAT
AATATTTCATGATT
Found at i:14918356 original size:18 final size:20
Alignment explanation
Indices: 14918320--14918357 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
14918310 AAAAATTATC
14918320 TTTTAATAAGTTTTAATTAA
1 TTTTAATAAGTTTTAATTAA
*
14918340 TTTTAA-AA-TTTTTATTAA
1 TTTTAATAAGTTTTAATTAA
14918358 AAGGATAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 2 0.12
20 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
TTTTAATAAGTTTTAATTAA
Found at i:14929263 original size:10 final size:9
Alignment explanation
Indices: 14929242--14929292 Score: 59
Period size: 9 Copynumber: 5.6 Consensus size: 9
14929232 ACCTGAAAAG
14929242 AAAAACAAA
1 AAAAACAAA
* *
14929251 AAACATAAA
1 AAAAACAAA
14929260 AAAAACAAA
1 AAAAACAAA
14929269 ACAAAACAAA
1 A-AAAACAAA
14929279 AAAATA-AAA
1 AAAA-ACAAA
14929288 AAAAA
1 AAAAA
14929293 GAGAAAAGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
8 1 0.03
9 25 0.69
10 10 0.28
ACGTcount: A:0.86, C:0.10, G:0.00, T:0.04
Consensus pattern (9 bp):
AAAAACAAA
Found at i:14930359 original size:55 final size:54
Alignment explanation
Indices: 14930293--14930492 Score: 271
Period size: 55 Copynumber: 3.7 Consensus size: 54
14930283 ATTTTTAAAG
* *
14930293 TTTCAAAGCCTCTATTTAGGGAAAGCCATTTTCAAACAAGATTTTTTAAAATGAT
1 TTTCAAAGCCTCTAATTAGGGGAAGCCATTTTCAAACAAGATTTTTTAAAA-GAT
* ** *
14930348 TTTCAAAGCCTCTATTTAAGGGG-AGTTATTTTCAAATAAGATTTTTTAAAAGAT
1 TTTCAAAGCCTCTAATT-AGGGGAAGCCATTTTCAAACAAGATTTTTTAAAAGAT
* * *
14930402 TTTCAAAGCCTTTAATTCGGGGAAGCCATTTTAAAACAAGA-TTTTTAAAAGAT
1 TTTCAAAGCCTCTAATTAGGGGAAGCCATTTTCAAACAAGATTTTTTAAAAGAT
*
14930455 TTTCAAAGCC-CTAATTAGGGGATGCCATTTTCAAACAA
1 TTTCAAAGCCTCTAATTAGGGGAAGCCATTTTCAAACAA
14930493 TAACTTTTAA
Statistics
Matches: 128, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 24 0.19
53 26 0.20
54 32 0.25
55 42 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35
Consensus pattern (54 bp):
TTTCAAAGCCTCTAATTAGGGGAAGCCATTTTCAAACAAGATTTTTTAAAAGAT
Found at i:14931687 original size:145 final size:144
Alignment explanation
Indices: 14931211--14931709 Score: 510
Period size: 145 Copynumber: 3.4 Consensus size: 144
14931201 GAGGAAGTAC
* ** * * **
14931211 AAAATTACTAAAATATCT-TTTAGGGGATATTTTTGTAATTTGATCTT-TCGGAGTTTGAATTTT
1 AAAATTACTAAAATACCTCTTTAGGGG-TATTTTCATAATTTGACCTTCTC-GAGCTCAAATTTT
** * * *
14931274 TGTGAAATTTTTTAGATTTTAATTTGATAATATTTCATGATTTTTGATGCATTTGAAATCACT-G
64 CCTGAAATTTTTCAGATCTTAATTTCATAATATTTCATGATTTTTGATGCATTTGAAATCA-TAG
**
14931338 CAATACCCCAAGAAATTT
128 CAATACCCCAA-AAACAT
* *
14931356 AAAATTACTAAAATACCT-TTTAAGGGGTATTTTCATAATTTAATCCTT-TTGCA-CTCAAATTT
1 AAAATTACTAAAATACCTCTTT-AGGGGTATTTTCATAATTTGA-CCTTCTCG-AGCTCAAATTT
** * * *
14931418 TTGTGAAAATTTTCAGATCTTAATTTTATAATATTTCATGATTTTTGGTGCATTTGAAATCATAG
63 TCCTGAAATTTTTCAGATCTTAATTTCATAATATTTCATGATTTTTGATGCATTTGAAATCATAG
* * *
14931483 CAGTACCCAAAAAACTAC
128 CAATACCCCAAAAAC-AT
* * * * *
14931501 AAAAGTACTAAAATACC-CTTTAGGGGGTATTTTTATAATTTGGCCTTCTCGAGCTTAGATTTTC
1 AAAATTACTAAAATACCTCTTTA-GGGGTATTTTCATAATTTGACCTTCTCGAGCTCAAATTTTC
* * * *
14931565 CTGAAATTTTTCAAATCTTAATTTCATAATATTTTATGATTTTTGTTGCATTGGAAATCATAGCA
65 CTGAAATTTTTCAGATCTTAATTTCATAATATTTCATGATTTTTGATGCATTTGAAATCATAGCA
*
14931630 ATACCCCTAAAAGCAT
130 ATACCCC-AAAAACAT
* * *
14931646 AAAATTA-TCGAAATACCTCTATAGGGGTATTTTCATAATTTGACCTTCTCGAGCTCGAATTTTC
1 AAAATTACT-AAAATACCTCTTTAGGGGTATTTTCATAATTTGACCTTCTCGAGCTCAAATTTTC
14931710 ACAAAAATTT
Statistics
Matches: 296, Mismatches: 46, Indels: 24
0.81 0.13 0.07
Matches are distributed among these distances:
144 11 0.04
145 266 0.90
146 19 0.06
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.41
Consensus pattern (144 bp):
AAAATTACTAAAATACCTCTTTAGGGGTATTTTCATAATTTGACCTTCTCGAGCTCAAATTTTCC
TGAAATTTTTCAGATCTTAATTTCATAATATTTCATGATTTTTGATGCATTTGAAATCATAGCAA
TACCCCAAAAACAT
Found at i:14931740 original size:290 final size:288
Alignment explanation
Indices: 14931208--14931765 Score: 648
Period size: 290 Copynumber: 1.9 Consensus size: 288
14931198 CTTGAGGAAG
* * * * * *
14931208 TACAAAATTACTAAAATATCTTTTAGGGGATATTTTTGTAATTTGATCTTTCGGAGTTTGAATTT
1 TACAAAAGTACTAAAATACCCTTTAGGGGATATTTTTATAATTTGACCTTTCGGAGTTAGAATTT
** * * * * *
14931273 TTGTGAAATTTTTTAGATTTTAATTTGATAATATTTCATGATTTTTGATGCATTTGAAATCACTG
66 TCCTGAAATTTTTCAAATCTTAATTTCATAATATTTCATGATTTTTGATGCATTGGAAATCACTG
** *
14931338 CAATACCCCAAGAAATTTAAAATTACTAAAATACCTTTTAAGGGGTATTTTCATAATTTAATCCT
131 CAATACCCCAAGAAACATAAAATTACTAAAATACCTTATAAGGGGTATTTTCATAATTTAATCCT
* **** * * * *
14931403 TTTGCACTCAAATTTTTGTGAAAATTTTCAGATCTTAATTTTATAATATTTCATGATTTTTGGTG
196 TTCGCACTCAAATTTTCACAAAAATTTTCAAATCTCAATTCTATAATATTTCATAATTTTTGGTG
14931468 CATTTGAAATCATAGCAGTACCCAAAAAAC
261 C-TTT-AAATCATAGCAGTACCCAAAAAAC
* *
14931498 TACAAAAGTACTAAAATACCCTTTAGGGGGTATTTTTATAATTTGGCCTTCTC-GAGCTTAG-AT
1 TACAAAAGTACTAAAATACCCTTTAGGGGATATTTTTATAATTTGACCTT-TCGGAG-TTAGAAT
* *
14931561 TTTCCTGAAATTTTTCAAATCTTAATTTCATAATATTTTATGATTTTTGTTGCATTGGAAATCA-
64 TTTCCTGAAATTTTTCAAATCTTAATTTCATAATATTTCATGATTTTTGATGCATTGGAAATCAC
* *
14931625 TAGCAATACCCCTAA-AAGCATAAAATTA-TCGAAATACCTCTAT-AGGGGTATTTTCATAATTT
129 T-GCAATACCCC-AAGAAACATAAAATTACT-AAAATACCT-TATAAGGGGTATTTTCATAATTT
* * *
14931687 GA-CCTTCTCG-AGCTCGAATTTTCACAAAAATTTTCAAATGC-CAATTCTATAATATTTTATAA
190 AATCCTT-TCGCA-CTCAAATTTTCACAAAAATTTTCAAAT-CTCAATTCTATAATATTTCATAA
14931749 TTTTTGGTGCTTTAAAT
252 TTTTTGGTGCTTTAAAT
14931766 TCCAAAAAAT
Statistics
Matches: 225, Mismatches: 34, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
288 4 0.02
289 10 0.04
290 201 0.89
291 10 0.04
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (288 bp):
TACAAAAGTACTAAAATACCCTTTAGGGGATATTTTTATAATTTGACCTTTCGGAGTTAGAATTT
TCCTGAAATTTTTCAAATCTTAATTTCATAATATTTCATGATTTTTGATGCATTGGAAATCACTG
CAATACCCCAAGAAACATAAAATTACTAAAATACCTTATAAGGGGTATTTTCATAATTTAATCCT
TTCGCACTCAAATTTTCACAAAAATTTTCAAATCTCAATTCTATAATATTTCATAATTTTTGGTG
CTTTAAATCATAGCAGTACCCAAAAAAC
Found at i:14932361 original size:20 final size:22
Alignment explanation
Indices: 14932311--14932360 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
14932301 AATAAAAGGC
14932311 TAAAGAAGGAAGAAGAGAAACTG
1 TAAA-AAGGAAGAAGAGAAACTG
*
14932334 TACAAAAGGAAGAAGAGGAA-TG
1 TA-AAAAGGAAGAAGAGAAACTG
14932356 TAAAA
1 TAAAA
14932361 GCCTTGAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 3 0.12
22 4 0.16
23 16 0.64
24 2 0.08
ACGTcount: A:0.58, C:0.04, G:0.28, T:0.10
Consensus pattern (22 bp):
TAAAAAGGAAGAAGAGAAACTG
Found at i:14933789 original size:3 final size:3
Alignment explanation
Indices: 14933781--14933812 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14933771 ATATATATAT
14933781 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14933813 TATTATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14933817 original size:3 final size:3
Alignment explanation
Indices: 14933811--14933847 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
14933801 AATAATAATA
14933811 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
14933848 AAAAATTAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:14934975 original size:18 final size:19
Alignment explanation
Indices: 14934948--14934984 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
14934938 AAATTAACTT
14934948 TTTTATAAATTTTAATTAA
1 TTTTATAAATTTTAATTAA
*
14934967 TTTTA-AAATTTTTATTAA
1 TTTTATAAATTTTAATTAA
14934985 AAGGATAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTATAAATTTTAATTAA
Found at i:14936241 original size:15 final size:16
Alignment explanation
Indices: 14936206--14936243 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
14936196 ATCTGAAATT
14936206 AAAATTATCAGAACTC
1 AAAATTATCAGAACTC
14936222 AAAATTATTCA-AAC-C
1 AAAATTA-TCAGAACTC
14936237 AAAATTA
1 AAAATTA
14936244 ACTTGAATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 10 0.48
17 3 0.14
ACGTcount: A:0.55, C:0.16, G:0.03, T:0.26
Consensus pattern (16 bp):
AAAATTATCAGAACTC
Found at i:14937127 original size:2 final size:2
Alignment explanation
Indices: 14937120--14937150 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
14937110 TATACTTACA
*
14937120 AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14937151 AAGAAAAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:14937493 original size:29 final size:30
Alignment explanation
Indices: 14937443--14937500 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
14937433 TCAAAATTTA
**
14937443 ATCCCTATACTATTATTTTTTGA-AATGTG
1 ATCCCTATACTATTATAATTTGATAATGTG
14937472 ATCCCTATACTATT-TGAATTTGATAATGT
1 ATCCCTATACTATTAT-AATTTGATAATGT
14937501 TAATCGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 1 0.04
29 19 0.76
30 5 0.20
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.47
Consensus pattern (30 bp):
ATCCCTATACTATTATAATTTGATAATGTG
Found at i:14942038 original size:2 final size:2
Alignment explanation
Indices: 14942031--14942056 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14942021 CTTTTTGTGC
14942031 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14942057 TGCATTACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14944546 original size:18 final size:19
Alignment explanation
Indices: 14944521--14944573 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
14944511 TTGATTACAT
**
14944521 ATTAAAATTTATTATTTTA
1 ATTAAAATTTATTAAATTA
14944540 A-TAAAATTT-TTAAAATTA
1 ATTAAAATTTATT-AAATTA
14944558 ATTAAAATTTATTAAA
1 ATTAAAATTTATTAAA
14944574 AAAATAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 2 0.07
18 13 0.45
19 12 0.41
20 2 0.07
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTAAAATTTATTAAATTA
Found at i:14944576 original size:22 final size:19
Alignment explanation
Indices: 14944537--14944574 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
14944527 ATTTATTATT
14944537 TTAA-TAAAATTTTTAAAA
1 TTAATTAAAATTTTTAAAA
14944555 TTAATTAAAATTTATTAAAA
1 TTAATTAAAATTT-TTAAAA
14944575 AAATAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 8 0.44
20 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TTAATTAAAATTTTTAAAA
Found at i:14947206 original size:15 final size:16
Alignment explanation
Indices: 14947180--14947209 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14947170 ATCTCCTTCC
14947180 CCTTTTTGTGTTTTTT
1 CCTTTTTGTGTTTTTT
14947196 CCTTTTT-TGTTTTT
1 CCTTTTTGTGTTTTT
14947210 CAGCAAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.13, G:0.10, T:0.77
Consensus pattern (16 bp):
CCTTTTTGTGTTTTTT
Found at i:14947916 original size:20 final size:21
Alignment explanation
Indices: 14947891--14947932 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
14947881 GATTGACCTT
14947891 AGTTTTAT-TCATTTTGACTA
1 AGTTTTATGTCATTTTGACTA
*
14947911 AGTTTTGTGTCATTTTGACTA
1 AGTTTTATGTCATTTTGACTA
14947932 A
1 A
14947933 AGTTGACTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (21 bp):
AGTTTTATGTCATTTTGACTA
Found at i:14948501 original size:51 final size:52
Alignment explanation
Indices: 14948354--14948657 Score: 294
Period size: 51 Copynumber: 5.8 Consensus size: 52
14948344 ATTTTTTGTT
* * * *
14948354 TTTGTAAATGGCTTCCCCTAAACAGAGGTTTTGAAATTTTTAAAAAAATCTTG
1 TTTGAAAATGGTTTCCCCTAAACAGAGGTTTTGAAA-CTTAAAAAAAATCTTG
* * *
14948407 TTTGAAAATAG-TTCCACTAAACAGAGCTTTTGAAACTTAAAAAAAATCTTG
1 TTTGAAAATGGTTTCCCCTAAACAGAGGTTTTGAAACTTAAAAAAAATCTTG
* * * * *
14948458 TTTGAAAATGGTTTCCTCTAAATAGAGGTTTCGAAACTT-AAAAAATTTTTG
1 TTTGAAAATGGTTTCCCCTAAACAGAGGTTTTGAAACTTAAAAAAAATCTTG
* * *
14948509 TTTGAAAATGGTTTCCCCCAAATAGAGGTTTTGAAA-TTAAAAAAAAAAAAAATCTTA
1 TTTGAAAATGGTTTCCCCTAAACAGAGGTTTTGAAACTT------AAAAAAAATCTTG
* * * *
14948566 TTTGAAAATGG-TTCCCCAAAATAAAGGTTTTGAAAATTAAAAAAAAAATCTTG
1 TTTGAAAATGGTTTCCCCTAAACAGAGGTTTTGAAACTT--AAAAAAAATCTTG
* *
14948619 TTTGAAAATGG-TTCTCCCTAAACAAAGGCTTTGAAACTT
1 TTTGAAAATGGTTTC-CCCTAAACAGAGGTTTTGAAACTT
14948658 TGAAAATGGC
Statistics
Matches: 215, Mismatches: 26, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
50 2 0.01
51 67 0.31
52 45 0.21
53 37 0.17
54 20 0.09
56 22 0.10
57 22 0.10
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (52 bp):
TTTGAAAATGGTTTCCCCTAAACAGAGGTTTTGAAACTTAAAAAAAATCTTG
Found at i:14948660 original size:37 final size:37
Alignment explanation
Indices: 14948619--14948694 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
14948609 AAAAATCTTG
* *
14948619 TTTGAAAATGGTTCTCCCTAAACA-AAGGCTTTGAAAC
1 TTTGAAAATGGCTCCCCCTAAACAGAA-GCTTTGAAAC
*
14948656 TTTGAAAATGGCTCCCCCTAAACAGAAGTTTTGAAAC
1 TTTGAAAATGGCTCCCCCTAAACAGAAGCTTTGAAAC
14948693 TT
1 TT
14948695 AAAAAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
37 33 0.94
38 2 0.06
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (37 bp):
TTTGAAAATGGCTCCCCCTAAACAGAAGCTTTGAAAC
Found at i:14948785 original size:145 final size:144
Alignment explanation
Indices: 14948608--14949148 Score: 467
Period size: 145 Copynumber: 3.6 Consensus size: 144
14948598 AAAATTAAAA
* * *
14948608 AAAAAATCTTGTTTGAAAATGGTTCTCCCTAAACAAAGGCTTTGAAACTTTGAAAATGGCTCCCC
1 AAAAAATCTTGTTTAAAAATGGTTCCCCCTAAACAAAGGCTTTGAAACTTTAAAAATGGCTCCCC
* **
14948673 CTAAACAGAAGTTTTGAAACTTAAAAAAAAATTTTGTTTAAAAATTGCTCCCCATACCCCGAGGC
66 CTAAACAGAAGTTTTGAAACTTAAAAAAAAAATTT-TTTAAAAATTGCTCCCCATACCTAGAGGC
14948738 TTTGATAATTTTTTT
130 TTTGATAATTTTTTT
* * * *
14948753 AAAAAATCTTGTTTAAAAATTGTTCCCCCTAAATAGAGGCTTTGAAACTTTAAAAATGGCTCCCT
1 AAAAAATCTTGTTTAAAAATGGTTCCCCCTAAACAAAGGCTTTGAAACTTTAAAAATGGCTCCCC
* * ** * ** * * * *** * * *
14948818 CTAAATAGAGGTTTTGAAACTTTGAAAATAGCTCTCTTAAACAGA-GGCT-TTGAAACTTTGAAA
66 CTAAACAGAAGTTTTGAAACTTAAAAAAAAAATTTTTTAAA-A-ATTGCTCCCCATAC-CT--AG
* * **
14948881 ATGGCTCCCCTTAAACAAAGGCTTTGAAAATTAAAA
126 A-GGCT----TT-GA-TAA---TTT-----TT--TT
* * * * *
14948917 AAAAAATCTTGTTTGAAAATGGTTCTCCCTAAACAAAGGCTTTGAAACTTTGAAAATGGCACCCT
1 AAAAAATCTTGTTTAAAAATGGTTCCCCCTAAACAAAGGCTTTGAAACTTTAAAAATGGCTCCCC
* * *
14948982 CTAAACAGAAGTTTTGAAACTTAAAAAAAAAATTTATTTGAAAATTGCTCCCCTTAACTAGAGGC
66 CTAAACAGAAGTTTTGAAACTTAAAAAAAAAATTT-TTTAAAAATTGCTCCCCATACCTAGAGGC
14949047 TTTGATAATTTTTTT
130 TTTGATAATTTTTTT
*
14949062 AAAAAATCTTGTTTAAAAATTGTTCCCCCTAAA-AAGAGGCTTTGAAACTTTAAAAATGGCTCCC
1 AAAAAATCTTGTTTAAAAATGGTTCCCCCTAAACAA-AGGCTTTGAAACTTTAAAAATGGCTCCC
* *
14949126 CCTAAATAGAGGTTTTGAAACTT
65 CCTAAACAGAAGTTTTGAAACTT
14949149 TGAAAATGGC
Statistics
Matches: 303, Mismatches: 67, Indels: 52
0.72 0.16 0.12
Matches are distributed among these distances:
144 10 0.03
145 165 0.54
146 1 0.00
147 3 0.01
148 4 0.01
152 5 0.02
153 1 0.00
154 2 0.01
155 2 0.01
156 1 0.00
157 5 0.02
161 4 0.01
162 4 0.01
163 1 0.00
164 90 0.30
165 5 0.02
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.32
Consensus pattern (144 bp):
AAAAAATCTTGTTTAAAAATGGTTCCCCCTAAACAAAGGCTTTGAAACTTTAAAAATGGCTCCCC
CTAAACAGAAGTTTTGAAACTTAAAAAAAAAATTTTTTAAAAATTGCTCCCCATACCTAGAGGCT
TTGATAATTTTTTT
Found at i:14948822 original size:37 final size:37
Alignment explanation
Indices: 14948764--14948918 Score: 170
Period size: 37 Copynumber: 4.2 Consensus size: 37
14948754 AAAAATCTTG
* * * *
14948764 TTTAAAAATTGTTCCCCCTAAATAGAGGCTTTGAAAC
1 TTTAAAAATGGCTCCCTCTAAACAGAGGCTTTGAAAC
* *
14948801 TTTAAAAATGGCTCCCTCTAAATAGAGGTTTTGAAAC
1 TTTAAAAATGGCTCCCTCTAAACAGAGGCTTTGAAAC
* * *
14948838 TTTGAAAATAGCTCTCT-TAAACAGAGGCTTTGAAAC
1 TTTAAAAATGGCTCCCTCTAAACAGAGGCTTTGAAAC
* * *
14948874 TTTGAAAATGGCTCCC-CTTAAACAAAGGCTTTGAAAA
1 TTTAAAAATGGCTCCCTC-TAAACAGAGGCTTTGAAAC
*
14948911 TTAAAAAA
1 TTTAAAAA
14948919 AAAATCTTGT
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
36 31 0.31
37 70 0.69
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (37 bp):
TTTAAAAATGGCTCCCTCTAAACAGAGGCTTTGAAAC
Found at i:14948871 original size:36 final size:36
Alignment explanation
Indices: 14948782--14948909 Score: 175
Period size: 37 Copynumber: 3.5 Consensus size: 36
14948772 TTGTTCCCCC
* *
14948782 TAAATAGAGGCTTTGAAACTTTAAAAATGGCTCCCT
1 TAAACAGAGGCTTTGAAACTTTGAAAATGGCTCCCT
* * * *
14948818 CTAAATAGAGGTTTTGAAACTTTGAAAATAGCTCTCT
1 -TAAACAGAGGCTTTGAAACTTTGAAAATGGCTCCCT
14948855 TAAACAGAGGCTTTGAAACTTTGAAAATGGCTCCCCT
1 TAAACAGAGGCTTTGAAACTTTGAAAATGGCT-CCCT
*
14948892 TAAACAAAGGCTTTGAAA
1 TAAACAGAGGCTTTGAAA
14948910 ATTAAAAAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
36 29 0.36
37 52 0.64
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (36 bp):
TAAACAGAGGCTTTGAAACTTTGAAAATGGCTCCCT
Found at i:14948941 original size:309 final size:309
Alignment explanation
Indices: 14948566--14949182 Score: 1056
Period size: 309 Copynumber: 2.0 Consensus size: 309
14948556 AAAAATCTTA
* * *
14948566 TTTGAAAATGGTTCCCCAAAATAAAGGTTTTGAAAATTAAAAAAAAAATCTTGTTTGAAAATGGT
1 TTTGAAAATGGCTCCCCAAAACAAAGGCTTTGAAAATTAAAAAAAAAATCTTGTTTGAAAATGGT
*
14948631 TCTCCCTAAACAAAGGCTTTGAAACTTTGAAAATGGCTCCCCCTAAACAGAAGTTTTGAAACTTA
66 TCTCCCTAAACAAAGGCTTTGAAACTTTGAAAATGGCACCCCCTAAACAGAAGTTTTGAAACTTA
* * * *
14948696 AAAAAAAATTTTGTTTAAAAATTGCTCCCCATACCCCGAGGCTTTGATAATTTTTTTAAAAAATC
131 AAAAAAAAATTTATTTAAAAATTGCTCCCCATAACCAGAGGCTTTGATAATTTTTTTAAAAAATC
* *
14948761 TTGTTTAAAAATTGTTCCCCCTAAATAGAGGCTTTGAAACTTTAAAAATGGCTCCCTCTAAATAG
196 TTGTTTAAAAATTGTTCCCCCTAAAAAGAGGCTTTGAAACTTTAAAAATGGCTCCCCCTAAATAG
* *
14948826 AGGTTTTGAAACTTTGAAAATAGCT-CTCTTAAACAGAGGCTTTGAAAC
261 AGGTTTTGAAACTTTGAAAATAGCTCCCCTTAAACAGAGGCTCTGAAAC
*
14948874 TTTGAAAATGGCTCCCCTTAAACAAAGGCTTTGAAAATTAAAAAAAAAATCTTGTTTGAAAATGG
1 TTTGAAAATGGCTCCCC-AAAACAAAGGCTTTGAAAATTAAAAAAAAAATCTTGTTTGAAAATGG
*
14948939 TTCTCCCTAAACAAAGGCTTTGAAACTTTGAAAATGGCACCCTCTAAACAGAAGTTTTGAAACTT
65 TTCTCCCTAAACAAAGGCTTTGAAACTTTGAAAATGGCACCCCCTAAACAGAAGTTTTGAAACTT
* * *
14949004 AAAAAAAAAATTTATTTGAAAATTGCTCCCCTTAACTAGAGGCTTTGATAATTTTTTTAAAAAAT
130 AAAAAAAAAATTTATTTAAAAATTGCTCCCCATAACCAGAGGCTTTGATAATTTTTTTAAAAAAT
14949069 CTTGTTTAAAAATTGTTCCCCCTAAAAAGAGGCTTTGAAACTTTAAAAATGGCTCCCCCTAAATA
195 CTTGTTTAAAAATTGTTCCCCCTAAAAAGAGGCTTTGAAACTTTAAAAATGGCTCCCCCTAAATA
*
14949134 GAGGTTTTGAAACTTTGAAAATGGCTCCCCTTAAACAGAGGCTCTGAAA
260 GAGGTTTTGAAACTTTGAAAATAGCTCCCCTTAAACAGAGGCTCTGAAA
14949183 ATTAAAAAAA
Statistics
Matches: 289, Mismatches: 18, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
308 16 0.06
309 253 0.88
310 20 0.07
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (309 bp):
TTTGAAAATGGCTCCCCAAAACAAAGGCTTTGAAAATTAAAAAAAAAATCTTGTTTGAAAATGGT
TCTCCCTAAACAAAGGCTTTGAAACTTTGAAAATGGCACCCCCTAAACAGAAGTTTTGAAACTTA
AAAAAAAAATTTATTTAAAAATTGCTCCCCATAACCAGAGGCTTTGATAATTTTTTTAAAAAATC
TTGTTTAAAAATTGTTCCCCCTAAAAAGAGGCTTTGAAACTTTAAAAATGGCTCCCCCTAAATAG
AGGTTTTGAAACTTTGAAAATAGCTCCCCTTAAACAGAGGCTCTGAAAC
Found at i:14948986 original size:37 final size:37
Alignment explanation
Indices: 14948928--14949003 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
14948918 AAAAATCTTG
**
14948928 TTTGAAAATGGTTCTCCCTAAACA-AAGGCTTTGAAAC
1 TTTGAAAATGGCACTCCCTAAACAGAA-GCTTTGAAAC
*
14948965 TTTGAAAATGGCAC-CCTCTAAACAGAAGTTTTGAAAC
1 TTTGAAAATGGCACTCC-CTAAACAGAAGCTTTGAAAC
14949002 TT
1 TT
14949004 AAAAAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 2 0.06
37 30 0.88
38 2 0.06
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (37 bp):
TTTGAAAATGGCACTCCCTAAACAGAAGCTTTGAAAC
Found at i:14949008 original size:91 final size:89
Alignment explanation
Indices: 14948838--14949051 Score: 261
Period size: 91 Copynumber: 2.4 Consensus size: 89
14948828 GTTTTGAAAC
* * *
14948838 TTTGAAAATAGCTCTCTTAAACAGAGGCTTTGAAACTTTGAAAATGGCTCCCCTTAAACAAAGGC
1 TTTGAAAATAGCTCTCCTAAACAAAGGCTTTGAAACTTTGAAAATGGCACCCCTTAAACAAAGGC
*
14948903 TTTGAAAATTAAAAAAAAAATCTTG
66 TTTGAAAATTAAAAAAAAAAT-TTA
* *
14948928 TTTGAAAATGGTTCTCCCTAAACAAAGGCTTTGAAACTTTGAAAATGGCA-CCCTCTAAACAGAA
1 TTTGAAAATAGCTCT-CCTAAACAAAGGCTTTGAAACTTTGAAAATGGCACCCCT-TAAACA-AA
* *
14948992 -GTTTTGAAACTTAAAAAAAAAATTTA
63 GGCTTTGAAAATTAAAAAAAAAATTTA
* * * *
14949018 TTTGAAAATTGCTCCCCTTAACTAGAGGCTTTGA
1 TTTGAAAATAGCTCTCCTAAAC-AAAGGCTTTGA
14949052 TAATTTTTTT
Statistics
Matches: 107, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
89 6 0.06
90 41 0.38
91 58 0.54
92 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.30
Consensus pattern (89 bp):
TTTGAAAATAGCTCTCCTAAACAAAGGCTTTGAAACTTTGAAAATGGCACCCCTTAAACAAAGGC
TTTGAAAATTAAAAAAAAAATTTA
Found at i:14949126 original size:37 final size:37
Alignment explanation
Indices: 14949073--14949191 Score: 148
Period size: 37 Copynumber: 3.2 Consensus size: 37
14949063 AAAAATCTTG
* *
14949073 TTTAAAAATTGTTCCCCCTAAAAAGAGGCTTTGAAAC
1 TTTAAAAATGGCTCCCCCTAAAAAGAGGCTTTGAAAC
* *
14949110 TTTAAAAATGGCTCCCCCTAAATAGAGGTTTTGAAAC
1 TTTAAAAATGGCTCCCCCTAAAAAGAGGCTTTGAAAC
* * * * *
14949147 TTTGAAAATGGCTCCCCTTAAACAGAGGCTCTGAAAA
1 TTTAAAAATGGCTCCCCCTAAAAAGAGGCTTTGAAAC
*
14949184 TTAAAAAA
1 TTTAAAAA
14949192 AAAAAAATCT
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (37 bp):
TTTAAAAATGGCTCCCCCTAAAAAGAGGCTTTGAAAC
Found at i:14949384 original size:101 final size:103
Alignment explanation
Indices: 14949248--14949467 Score: 241
Period size: 105 Copynumber: 2.1 Consensus size: 103
14949238 AATTTTTAAA
* * * * *
14949248 AAAATCTTAAAATGTTTTGCCGGAAGGTTTTAGAGATTATA-G-AGGGCTTACTAATCTCTCAAT
1 AAAAT-TTAAAATGCTTTGCCGGAAGGTCTTAGAGATTATATGAAAGGCTTACCAATCTCGCAAT
* * * *
14949311 CTTTGAATGCTTC-TCCTAATTAGAAGTATTGAAACTTTG
65 CTTTGAATACTCCTTCC-AATTAGAAGCACTGAAACTTTG
* ** *
14949350 AAAATTTAAAATGCTTTGCTTGG-AGGTCTTAGAGATTATACTTGAAAGTTTTACCAATCTCGCC
1 AAAATTTAAAATGCTTTGC-CGGAAGGTCTTAGAGATTATA--TGAAAGGCTTACCAATCTCGCA
*
14949414 ATCTTTGAATACTCCTTCCAATTAGAGGCACTGAAACTTTG
63 ATCTTTGAATACTCCTTCCAATTAGAAGCACTGAAACTTTG
14949455 AAAATTTAAAATG
1 AAAATTTAAAATG
14949468 TTTTATCGAA
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
101 29 0.30
102 7 0.07
104 1 0.01
105 58 0.59
106 3 0.03
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (103 bp):
AAAATTTAAAATGCTTTGCCGGAAGGTCTTAGAGATTATATGAAAGGCTTACCAATCTCGCAATC
TTTGAATACTCCTTCCAATTAGAAGCACTGAAACTTTG
Found at i:14949493 original size:105 final size:104
Alignment explanation
Indices: 14949295--14949497 Score: 230
Period size: 105 Copynumber: 1.9 Consensus size: 104
14949285 TATAGAGGGC
* * * * * *
14949295 TTACTAATCTCTCAATCTTTGAATGCTTCTCCTAATTAGAAGTATTGAAACTTTGAAAATTTAAA
1 TTACCAATCTCGCAATCTTTGAATACTCCTCCTAATTAGAAGCACTGAAACTTTGAAAATTTAAA
* * * * * *
14949360 ATGCTTTGCTTGGAGGTCTTAGAGATTATACTTGAAAGTT
66 ATGCTTTGATCGAAGGTCTCAAAAATTAT-CTTGAAAGTT
* *
14949400 TTACCAATCTCGCCATCTTTGAATACTCCTTCC-AATTAGAGGCACTGAAACTTTGAAAATTTAA
1 TTACCAATCTCGCAATCTTTGAATACTCC-TCCTAATTAGAAGCACTGAAACTTTGAAAATTTAA
*
14949464 AATG-TTTTATCGAAAGGTCTCAAAAATTATCTTG
65 AATGCTTTGATCG-AAGGTCTCAAAAATTATCTTG
14949498 GGTGCTAGCT
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
104 9 0.11
105 69 0.85
106 3 0.04
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (104 bp):
TTACCAATCTCGCAATCTTTGAATACTCCTCCTAATTAGAAGCACTGAAACTTTGAAAATTTAAA
ATGCTTTGATCGAAGGTCTCAAAAATTATCTTGAAAGTT
Found at i:14949740 original size:13 final size:13
Alignment explanation
Indices: 14949691--14949740 Score: 66
Period size: 14 Copynumber: 3.7 Consensus size: 13
14949681 TCTCTTTGCT
14949691 TTTTTTTCCTTTTC
1 TTTTTTT-CTTTTC
14949705 TTTTTTTCTTTT-
1 TTTTTTTCTTTTC
14949717 TGTTTTATTCTTTTC
1 T-TTTT-TTCTTTTC
14949732 TTTTTTTCT
1 TTTTTTTCT
14949741 AATATTTACA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
12 1 0.03
13 13 0.39
14 18 0.55
15 1 0.03
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (13 bp):
TTTTTTTCTTTTC
Found at i:14950034 original size:41 final size:41
Alignment explanation
Indices: 14949989--14950127 Score: 161
Period size: 41 Copynumber: 3.6 Consensus size: 41
14949979 TAGATAATGT
*
14949989 AAATGCAAATGTCTTTCTCATGATGCAGATGCTAGTGATGC
1 AAATGCAAATGTCTTTCTCATGATGCAGATGCTAGTGATAC
* * *
14950030 AAATGTAAATGTCTTTTTCATGATGTAGATGCTAGTGATAC
1 AAATGCAAATGTCTTTCTCATGATGCAGATGCTAGTGATAC
* *
14950071 AAATGCAAATGTCTTT-T--T--TG-TGATG-TA--GATAT
1 AAATGCAAATGTCTTTCTCATGATGCAGATGCTAGTGATAC
14950103 AAATGCAAATGTCTTTCTCATGATG
1 AAATGCAAATGTCTTTCTCATGATG
14950128 TACATGCAAG
Statistics
Matches: 86, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
32 20 0.23
33 1 0.01
34 2 0.02
35 5 0.06
36 2 0.02
37 2 0.02
38 1 0.01
40 1 0.01
41 52 0.60
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (41 bp):
AAATGCAAATGTCTTTCTCATGATGCAGATGCTAGTGATAC
Found at i:14950127 original size:32 final size:32
Alignment explanation
Indices: 14950066--14950129 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
14950056 AGATGCTAGT
* **
14950066 GATACAAATGCAAATGTCTTTTTTGTGATGTA
1 GATACAAATGCAAATGTCTTTCTCATGATGTA
*
14950098 GATATAAATGCAAATGTCTTTCTCATGATGTA
1 GATACAAATGCAAATGTCTTTCTCATGATGTA
14950130 CATGCAAGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (32 bp):
GATACAAATGCAAATGTCTTTCTCATGATGTA
Found at i:14950234 original size:38 final size:38
Alignment explanation
Indices: 14950149--14950236 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 38
14950139 ATGAATGCAA
* *
14950149 GTGATGCAAATGTGAATATTTTTTTTTATGATACAGAT
1 GTGATGCAAATGTGAATAGTCTTTTTTATGATACAGAT
* * **
14950187 GTAAGTGCAAATGTGAAT-GTCTTTTTTGTGATGTAGAT
1 GTGA-TGCAAATGTGAATAGTCTTTTTTATGATACAGAT
14950225 GTGGATGCAAAT
1 GT-GATGCAAAT
14950237 TTTTTTCTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
38 27 0.66
39 14 0.34
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.41
Consensus pattern (38 bp):
GTGATGCAAATGTGAATAGTCTTTTTTATGATACAGAT
Found at i:14950270 original size:124 final size:123
Alignment explanation
Indices: 14950024--14950301 Score: 301
Period size: 124 Copynumber: 2.2 Consensus size: 123
14950014 CAGATGCTAG
* * ** **
14950024 TGATGCAAATGTAAATGT-CTTTTTCATGATGTAGATGCT-AGTGATACAAATGCAAATGTCTTT
1 TGATGCAAATGTAAATATCCTTTTTTATGATACAGATG-TAAGTG---CAAATGTGAATGTCTTT
* * ** *
14950087 TTTGTGATGTAGATATAAATGCAAATGTCTTTCTCATGATGTACATGCAAGTATGAATGCAAG
62 TTTGTGATGTAGATATAAATGCAAATGTCTTTCTCATGATGCACAT-CAAGAACAAATGCAAA
* **
14950150 TGATGCAAATGTGAATATTTTTTTTTATGATACAGATGTAAGTGCAAATGTGAATGTCTTTTTTG
1 TGATGCAAATGTAAATATCCTTTTTTATGATACAGATGTAAGTGCAAATGTGAATGTCTTTTTTG
* ** * *
14950215 TGATGTAGATGTGGATGCAAATTTTTTTCTCATGATGCACGCAT-AAGAACAAATGCAAA
66 TGATGTAGATATAAATGCAAATGTCTTTCTCATGATGCA--CATCAAGAACAAATGCAAA
14950274 TGATGCAAATGTAAATATCCTTTTTTAT
1 TGATGCAAATGTAAATATCCTTTTTTAT
14950302 TTTTTTTTGG
Statistics
Matches: 127, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
124 88 0.69
126 20 0.16
127 19 0.15
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (123 bp):
TGATGCAAATGTAAATATCCTTTTTTATGATACAGATGTAAGTGCAAATGTGAATGTCTTTTTTG
TGATGTAGATATAAATGCAAATGTCTTTCTCATGATGCACATCAAGAACAAATGCAAA
Found at i:14951753 original size:18 final size:17
Alignment explanation
Indices: 14951727--14951772 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
14951717 GGTGCATGCC
*
14951727 TTTTTTTTTTACTCT-T
1 TTTTTTTTTTTCTCTAT
14951743 TTTTTTCTTTTTCTCTAT
1 TTTTTT-TTTTTCTCTAT
14951761 TTTTTTATTTTT
1 TTTTTT-TTTTT
14951773 GATTTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 6 0.23
17 8 0.31
18 12 0.46
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTTTTTTTCTCTAT
Found at i:14951945 original size:179 final size:179
Alignment explanation
Indices: 14951578--14952007 Score: 544
Period size: 179 Copynumber: 2.4 Consensus size: 179
14951568 TCATTACTTT
* * * * * *
14951578 TATTTTTCTATTTTATTTTTTTTTGGAAACATTAGACTTCAACTTTAGGATTCTTCTTTCTTGAA
1 TATTTTTTTATTTT-TATTTTTTTGGAAATATTTGACTTCAATTTTAGCATTCTTCTTTCTTGAA
* ** * *
14951643 TTCTATCTCCAATTTTTTGCTTGGGATTCTAACTGAAACCTCATTTGCTTTTGGCCTTAGACTCT
65 TTCTATCTCCAATTTTTTACTTGGGATTCTAACTGAAACCTCATTCACTTTTGACCGTAGACTCT
* * * *
14951708 TATATCTGAGGTGCATGCCTTTTTTTTTTACTCTTTTTTTTCTTTTTCTC
130 CATATCTGAGGTGCATGCCTTTTTTCTTTACTCTTTTTCTTCTTTATCTC
*
14951758 TATTTTTTTATTTTTGATTTTTTT-GAAATATTTGACTTTAATTTTAGCATTCTTCTTTCTTGAA
1 TATTTTTTTATTTTT-ATTTTTTTGGAAATATTTGACTTCAATTTTAGCATTCTTCTTTCTTGAA
* * * * *
14951822 TTCTATCTGCC-TTTTTTTACTTGGGATTCTAATTGAAACCTTATTCACTTTTTACCGTGGACTC
65 TTCTATCT-CCAATTTTTTACTTGGGATTCTAACTGAAACCTCATTCACTTTTGACCGTAGACTC
* * *
14951886 TCATCTTTGAGGTGCATGCCTTTCTTTCTTTGCTCTTTTTCTTCTTCTAT-TC
129 TCATATCTGAGGTGCATGCCTTT-TTTCTTTACTCTTTTTCTTCTT-TATCTC
* *
14951938 T-TTTTTTTATTTTTATTTTTTTGGGAAATATTTGACTTCAATTTTAGCATTCTACTTTCTTCAA
1 TATTTTTTTATTTTTATTTTTTT-GGAAATATTTGACTTCAATTTTAGCATTCTTCTTTCTTGAA
14952002 TTCTAT
65 TTCTAT
14952008 TTTCCTGAAG
Statistics
Matches: 217, Mismatches: 27, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
178 8 0.04
179 120 0.55
180 87 0.40
181 2 0.01
ACGTcount: A:0.18, C:0.17, G:0.10, T:0.55
Consensus pattern (179 bp):
TATTTTTTTATTTTTATTTTTTTGGAAATATTTGACTTCAATTTTAGCATTCTTCTTTCTTGAAT
TCTATCTCCAATTTTTTACTTGGGATTCTAACTGAAACCTCATTCACTTTTGACCGTAGACTCTC
ATATCTGAGGTGCATGCCTTTTTTCTTTACTCTTTTTCTTCTTTATCTC
Found at i:14952479 original size:19 final size:20
Alignment explanation
Indices: 14952438--14952482 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
14952428 AAAATGTTTC
*
14952438 TTTTT-TTATTTTTTTGTTG
1 TTTTTGTTATTTTCTTGTTG
14952457 -TTTTGTTATTTTCTT-TTG
1 TTTTTGTTATTTTCTTGTTG
14952475 TTTTTGTT
1 TTTTTGTT
14952483 TTTGTGTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.04, C:0.02, G:0.11, T:0.82
Consensus pattern (20 bp):
TTTTTGTTATTTTCTTGTTG
Found at i:14976647 original size:203 final size:203
Alignment explanation
Indices: 14976299--14976670 Score: 584
Period size: 203 Copynumber: 1.8 Consensus size: 203
14976289 CTTTTGCAAT
* * * * * * *
14976299 TATGATTATTAATACTTAATTTTGTTGATTTAAGGTTTTTCTTGAGTACAAGTAAAGATTTAAGT
1 TATGATTATTAATACTTAATTTTGTTCATTTAAGATTTTGCTCGAGGACAAGCAAAAATTTAAGT
14976364 GTGGGGTTGTGATAACACCTAAATATATAAAGTTTTTACATGTAAAAAATGGCGCTAATTTTTAA
66 GTGGGGTTGTGATAACACCTAAATATATAAAGTTTTTACATGTAAAAAATGGCGCTAATTTTTAA
* *
14976429 AATTTGGATGATTTTT-GTTTTTTTCATATTGTTTTCATAATAGGAAGTTTATGTTGTTTTTTAC
131 AATTTGAATGATTTTTGGTGTTTTTCATATTGTTTTCATAATAGGAAGTTTATGTTGTTTTTTAC
14976493 TTTGTAAG
196 TTTGTAAG
* **
14976501 TATGATTATTGATACTTAATTTTGTTCATTTGCGATTTTGCTCGAGGACAAGCAAAAATTTAAGT
1 TATGATTATTAATACTTAATTTTGTTCATTTAAGATTTTGCTCGAGGACAAGCAAAAATTTAAGT
* * * *
14976566 GTTGGGGTTGTGATAGCACCTAAATATATAGAGTTTTTACATGTAAAAAATGGTGCTAATTTTTT
66 G-TGGGGTTGTGATAACACCTAAATATATAAAGTTTTTACATGTAAAAAATGGCGCTAATTTTTA
14976631 AAATTTGAATGATTTTTGGTGTTTTTCATATTGTTTTCAT
130 AAATTTGAATGATTTTTGGTGTTTTTCATATTGTTTTCAT
14976671 GATTTTAGGT
Statistics
Matches: 152, Mismatches: 16, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
202 56 0.37
203 75 0.49
204 21 0.14
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (203 bp):
TATGATTATTAATACTTAATTTTGTTCATTTAAGATTTTGCTCGAGGACAAGCAAAAATTTAAGT
GTGGGGTTGTGATAACACCTAAATATATAAAGTTTTTACATGTAAAAAATGGCGCTAATTTTTAA
AATTTGAATGATTTTTGGTGTTTTTCATATTGTTTTCATAATAGGAAGTTTATGTTGTTTTTTAC
TTTGTAAG
Found at i:14983679 original size:19 final size:20
Alignment explanation
Indices: 14983650--14983688 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14983640 AGCAAGAACC
14983650 TTTTTTGTTTT-CTTTGAAAG
1 TTTTTTGTTTTAC-TTGAAAG
14983670 TTTTTT-TTTTACTTGAAAG
1 TTTTTTGTTTTACTTGAAAG
14983689 GCTTATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.18, C:0.05, G:0.13, T:0.64
Consensus pattern (20 bp):
TTTTTTGTTTTACTTGAAAG
Found at i:14984606 original size:143 final size:146
Alignment explanation
Indices: 14984303--14984637 Score: 394
Period size: 143 Copynumber: 2.3 Consensus size: 146
14984293 GATTTTAAAG
* * * * **
14984303 CACCAAAAAATCTTCAAATATTA-AAAAATTTAGATCTGGAAAGTTTCATGAAAATTCATGCTTG
1 CACC-AAAAATCATGAAATATTATGAAAATTAAGATCTGGAAAGTTTCATGAAAATTCATGCCCG
** * * *
14984367 GGAAGGCCAAATTACAAAAAAAAACCCCTAAAGGGTATTTTGGTAATTTCACATCTCTCAGGGTA
65 AAAAGGCCAAATTAC-AAAAAAAACCCCTAAAGGGTATTTTGGTAATTTCACACCTCCCAAGGTA
* *
14984432 CTACTATGATTTCAAATG
129 CTAATATGATTTCAAATA
* *
14984450 CACCAAAAATCATGAAATATTATGAAAATTGAGATTTGGAAAGTTTCATG-AAATTCGA-GCCCG
1 CACCAAAAATCATGAAATATTATGAAAATTAAGATCTGGAAAGTTTCATGAAAATTC-ATGCCCG
* * * * *
14984513 AAAAGGCCAAATTAC-AAAAATATCCTTAAGGGGTATTTTGGTAA-TTCATACCTCCCAAGGTAC
65 AAAAGGCCAAATTACAAAAAAAACCCCTAAAGGGTATTTTGGTAATTTCACACCTCCCAAGGTAC
*
14984576 TAATGTGATTTCAAATA
130 TAATATGATTTCAAATA
* *
14984593 CATCAAAAATCATGAAATATTATG-AAATTAAGATCTGAAAAGTTT
1 CACCAAAAATCATGAAATATTATGAAAATTAAGATCTGGAAAGTTT
14984638 TAATGGAAAA
Statistics
Matches: 162, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
142 18 0.11
143 52 0.32
144 25 0.15
146 38 0.23
147 29 0.18
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (146 bp):
CACCAAAAATCATGAAATATTATGAAAATTAAGATCTGGAAAGTTTCATGAAAATTCATGCCCGA
AAAGGCCAAATTACAAAAAAAACCCCTAAAGGGTATTTTGGTAATTTCACACCTCCCAAGGTACT
AATATGATTTCAAATA
Found at i:14985071 original size:104 final size:105
Alignment explanation
Indices: 14984934--14985144 Score: 372
Period size: 105 Copynumber: 2.0 Consensus size: 105
14984924 TCACTTCATT
*
14984934 TATTCTTTATTTCTCATGCATCCATGTGAAAAGGTAG-CTCTACATAAATCCCATGCAAAAGAGT
1 TATTCTTTATTTCTCATCCATCCATGTGAAAAGGTAGCCTCTACATAAATCCCATGCAAAAGAGT
* *
14984998 TTGACTGC-ACCCTATGGGTCTCCTTTTCATTTGTTTATTA
66 TTGACTACAACCCTACGGGTCTCCTTTTCATTT-TTTATTA
14985038 TATTCTTTATTTCTCATCCATCCATGTGAAAAGGTAGCCTCTACATAAATCCCATGCAAAAGAGT
1 TATTCTTTATTTCTCATCCATCCATGTGAAAAGGTAGCCTCTACATAAATCCCATGCAAAAGAGT
14985103 TTGACTACAACCCTACGGGTCTCCTTTTCATTTTTTATTA
66 TTGACTACAACCCTACGGGTCTCCTTTTCATTTTTTATTA
14985143 TA
1 TA
14985145 GGCCTAAATA
Statistics
Matches: 102, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
104 36 0.35
105 43 0.42
106 23 0.23
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (105 bp):
TATTCTTTATTTCTCATCCATCCATGTGAAAAGGTAGCCTCTACATAAATCCCATGCAAAAGAGT
TTGACTACAACCCTACGGGTCTCCTTTTCATTTTTTATTA
Found at i:14985648 original size:70 final size:70
Alignment explanation
Indices: 14985573--14985720 Score: 165
Period size: 70 Copynumber: 2.1 Consensus size: 70
14985563 TTGGCTAATA
* * * * *
14985573 AAAATGATCAAGATT-AAGTCATGAGTTGAA-AAATAAATATGACTGACACCGAGCCGCAAGTCA
1 AAAATGATCAAGATTGAA-CCATGA-ATCAATAAATAAATATGAATGACACCGAGCCACAAGTCA
14985636 GGAAATG
64 GGAAATG
* * * * * *
14985643 AAAATGACCTAGATTGAACCATGAATCAATGAATAAATATGAATGAGACTGAGCCATAAGTCAGG
1 AAAATGATCAAGATTGAACCATGAATCAATAAATAAATATGAATGACACCGAGCCACAAGTCAGG
14985708 AAATG
66 AAATG
14985713 AAAATGAT
1 AAAATGAT
14985721 TAGGTTTGAA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
69 3 0.05
70 59 0.92
71 2 0.03
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (70 bp):
AAAATGATCAAGATTGAACCATGAATCAATAAATAAATATGAATGACACCGAGCCACAAGTCAGG
AAATG
Found at i:14985730 original size:70 final size:70
Alignment explanation
Indices: 14985604--14985824 Score: 212
Period size: 70 Copynumber: 3.2 Consensus size: 70
14985594 TGAGTTGAAA
* * * ** * *
14985604 AATAAATATGACTGACACCGAGCCGCAAGTCAGGAAATGAAAATGACCTA-GATTGAACCATGAA
1 AATAAATATGAATGAGACTGAGCCATAAGTCAGGAAATGAAAATGA-TTAGGATTGAACCATGAG
*
14985668 TCAATG
65 TCAAAG
* ** *
14985674 AATAAATATGAATGAGACTGAGCCATAAGTCAGGAAATGAAAATGATTAGGTTTGAACTGTGAGG
1 AATAAATATGAATGAGACTGAGCCATAAGTCAGGAAATGAAAATGATTAGGATTGAACCATGAGT
*
14985739 CAAAA
66 CAAAG
* * * * * * * *
14985744 AATAAATATGATTG-GAATTGAACAATAATTCAAGAAATGAAAATGATTGGGATTGAACCACGAG
1 AATAAATATGAATGAG-ACTGAGCCATAAGTCAGGAAATGAAAATGATTAGGATTGAACCATGAG
*
14985808 TTAAAG
65 TCAAAG
14985814 AATAAATATGA
1 AATAAATATGA
14985825 TCGATATTGA
Statistics
Matches: 122, Mismatches: 27, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
69 3 0.02
70 119 0.98
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.23
Consensus pattern (70 bp):
AATAAATATGAATGAGACTGAGCCATAAGTCAGGAAATGAAAATGATTAGGATTGAACCATGAGT
CAAAG
Found at i:14985825 original size:35 final size:35
Alignment explanation
Indices: 14985743--14985825 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 35
14985733 GTGAGGCAAA
* *
14985743 AAATAAATATGATTGGAATTGAACAATAATTCAAG
1 AAATAAATATGATTGGAATTGAACAAGAATTAAAG
* * *
14985778 AAATGAAA-ATGATTGGGATTGAACCACGAGTTAAAG
1 AAAT-AAATATGATTGGAATTGAA-CAAGAATTAAAG
14985814 -AATAAATATGAT
1 AAATAAATATGAT
14985826 CGATATTGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
34 3 0.08
35 26 0.65
36 11 0.28
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.27
Consensus pattern (35 bp):
AAATAAATATGATTGGAATTGAACAAGAATTAAAG
Found at i:14985834 original size:70 final size:67
Alignment explanation
Indices: 14985630--14985957 Score: 191
Period size: 70 Copynumber: 4.7 Consensus size: 67
14985620 ACCGAGCCGC
* * * * * *
14985630 AAGTCAGGAAATGAAAATGACCTAGATTGAACCATGAATCAATGAATAAATATGAATGAGACTGA
1 AAGTCAAGAAATGAAAATGA-TTGGATTGAACCATGAGTCAAAGAATAAATATG-ATGA-ATTGA
* *
14985695 GCCAT
63 ACAAT
* * ** * *
14985700 AAGTCAGGAAATGAAAATGATTAGGTTTGAACTGTGAGGCAAAAAATAAATATGATTGGAATTGA
1 AAGTCAAGAAATGAAAATGATT-GGATTGAACCATGAGTCAAAGAATAAATATGA-T-GAATTGA
14985765 ACAAT
63 ACAAT
* * *
14985770 AATTCAAGAAATGAAAATGATTGGGATTGAACCACGAGTTAAAGAATAAATATGATCGATATTGA
1 AAGTCAAGAAATGAAAATGATT-GGATTGAACCATGAGTCAAAGAATAAATATGAT-GA-ATTGA
*
14985835 ATC-GT
63 A-CAAT
* * * * * *
14985840 AAGTCTAAG-AATAAAAATGAATAGATAGAA--TTGCAAGTCAAAGAATAAAAATGGCAATG-AT
1 AAGTC-AAGAAATGAAAATGATTGGATTGAACCATG--AGTCAAAGAATAAATAT-G--ATGAAT
* * *
14985901 TAAACCAC
60 TGAACAAT
* * *
14985909 AAGTCGAG-GATGAAAATGATTGAGATTGAACCATGAGTCGAAGAATAAA
1 AAGTCAAGAAATGAAAATGATTG-GATTGAACCATGAGTCAAAGAATAAA
14985958 AAAGACCAAG
Statistics
Matches: 199, Mismatches: 44, Indels: 31
0.73 0.16 0.11
Matches are distributed among these distances:
67 1 0.01
68 13 0.07
69 55 0.28
70 119 0.60
71 9 0.05
72 2 0.01
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.23
Consensus pattern (67 bp):
AAGTCAAGAAATGAAAATGATTGGATTGAACCATGAGTCAAAGAATAAATATGATGAATTGAACA
AT
Found at i:14986281 original size:33 final size:33
Alignment explanation
Indices: 14986187--14986299 Score: 129
Period size: 33 Copynumber: 3.5 Consensus size: 33
14986177 ATGTGCCAAC
** * *
14986187 TAAACTAGGCTTAAATTTTCACTAAGTGCCAGG
1 TAAACTAGGCTTAAAACTTCACTAGGTGTCAGG
* *
14986220 TAAGCTAGGTTTAAAACTTCACTAGGTGTCAGG
1 TAAACTAGGCTTAAAACTTCACTAGGTGTCAGG
* * *
14986253 TAAACTAGGCTTAAAACTTCATTGGGTGT-AGC
1 TAAACTAGGCTTAAAACTTCACTAGGTGTCAGG
*
14986285 TAAACTATGCTTAAA
1 TAAACTAGGCTTAAA
14986300 TTTTAGGTAA
Statistics
Matches: 68, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
32 16 0.24
33 52 0.76
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (33 bp):
TAAACTAGGCTTAAAACTTCACTAGGTGTCAGG
Found at i:14986862 original size:22 final size:22
Alignment explanation
Indices: 14986837--14986905 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
14986827 AGCTAATATA
14986837 GGCTTATGTGCCAACTAATCTG
1 GGCTTATGTGCCAACTAATCTG
* * * ** *
14986859 GGCTTCTATGCTAGTTAAACTG
1 GGCTTATGTGCCAACTAATCTG
*
14986881 GGCTTATGTGCCACCTAATCTG
1 GGCTTATGTGCCAACTAATCTG
14986903 GGC
1 GGC
14986906 ATATAGCTTT
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (22 bp):
GGCTTATGTGCCAACTAATCTG
Found at i:14987565 original size:15 final size:15
Alignment explanation
Indices: 14987547--14987576 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14987537 TACTTTCTCT
*
14987547 TTTTTTTTTTTTTAC
1 TTTTTTTATTTTTAC
14987562 TTTTTTTATTTTTAC
1 TTTTTTTATTTTTAC
14987577 GCCATGCACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTTATTTTTAC
Found at i:14988323 original size:21 final size:21
Alignment explanation
Indices: 14988297--14988348 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
14988287 ATTTCAAAAG
* *
14988297 TTTTTTTGTTTGTTTGCTTTT
1 TTTTTTTGTTTATTGGCTTTT
**
14988318 TTTTTTTAATTATTGGCTTTT
1 TTTTTTTGTTTATTGGCTTTT
14988339 TTATTTTTGT
1 TT-TTTTTGT
14988349 GCTTTTTCCT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.08, C:0.04, G:0.12, T:0.77
Consensus pattern (21 bp):
TTTTTTTGTTTATTGGCTTTT
Found at i:14988459 original size:17 final size:16
Alignment explanation
Indices: 14988437--14988470 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14988427 GATGTCATAA
*
14988437 TCATTTTTCTTTTCTTT
1 TCATTTCTCTTTT-TTT
14988454 TCATTTCTCTTTTTTT
1 TCATTTCTCTTTTTTT
14988470 T
1 T
14988471 TTCTCTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (16 bp):
TCATTTCTCTTTTTTT
Found at i:14988471 original size:17 final size:17
Alignment explanation
Indices: 14988437--14988491 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 17
14988427 GATGTCATAA
* *
14988437 TCATTTTTCTTTTCTTT
1 TCATTTCTCTTTTTTTT
14988454 TCATTTCTCTTTTTTTTT
1 TCATTTCTC-TTTTTTTT
*
14988472 TCTCTTTCTCTCTTTTTTT
1 TC-ATTTCTCT-TTTTTTT
14988491 T
1 T
14988492 TTGACATGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.25
18 10 0.31
19 14 0.44
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (17 bp):
TCATTTCTCTTTTTTTT
Found at i:14988489 original size:23 final size:23
Alignment explanation
Indices: 14988440--14988493 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 23
14988430 GTCATAATCA
* *
14988440 TTTTTCTTTTCTTTTCATTTCTC
1 TTTTTTTTTTCTTTTCATCTCTC
*
14988463 TTTTTTTTTTCTCTT--TCTCTC
1 TTTTTTTTTTCTTTTCATCTCTC
14988484 TTTTTTTTTT
1 TTTTTTTTTT
14988494 GACATGCCCC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 15 0.54
23 13 0.46
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (23 bp):
TTTTTTTTTTCTTTTCATCTCTC
Found at i:14994370 original size:3 final size:3
Alignment explanation
Indices: 14994355--14994389 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
14994345 TGCATAAAAT
*
14994355 TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14994390 TTGCATGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:14996354 original size:144 final size:145
Alignment explanation
Indices: 14996165--14996477 Score: 375
Period size: 144 Copynumber: 2.2 Consensus size: 145
14996155 TTAAAGCACT
* * * *
14996165 AAAAATCATGAAATATTA-AAAATTTGATATCTAAAAAGTTTCATGAAAATCCAAGCTTAAAAAG
1 AAAAATCATGAAATATTATGAAATTGGATATCTAAAAAGTGTCATGAAAATCCAACCTTAAAAAG
* * *
14996229 GTCAAATTAGAAAAATACCC-CTAAGTGGTATTTTTC-TAGTTTCACACCTCTCGGGGTACTGCT
66 GTCAAATTACAAAAATACCCTCTAAG-GGTA-TTTTCGTAATTCCACACCTCTCGGGGTACTGCT
*
14996292 GTGATTTCAAATACACC
129 ATGATTTCAAATACACC
* **** *
14996309 AAAAATCATGAAATATTATGAAATTGGGATAT-T-GAAAGTGTCATGAAAATTGGTCCTTAGAAA
1 AAAAATCATGAAATATTATGAAATT-GGATATCTAAAAAGTGTCATGAAAATCCAACCTTAAAAA
* * * * *
14996372 GGTCAAATTACAAAAATACCCTTTAAGGGTATTTTCGTAATTCCATACCTTTTGGGGTACTGTTA
65 GGTCAAATTACAAAAATACCCTCTAAGGGTATTTTCGTAATTCCACACCTCTCGGGGTACTGCTA
* *
14996437 TGATTTCAAATGCTCC
130 TGATTTCAAATACACC
14996453 AAAAATCATGAAATATTATGAAATT
1 AAAAATCATGAAATATTATGAAATT
14996478 AAGATTTGAA
Statistics
Matches: 144, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
143 5 0.03
144 124 0.86
145 10 0.07
146 5 0.03
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (145 bp):
AAAAATCATGAAATATTATGAAATTGGATATCTAAAAAGTGTCATGAAAATCCAACCTTAAAAAG
GTCAAATTACAAAAATACCCTCTAAGGGTATTTTCGTAATTCCACACCTCTCGGGGTACTGCTAT
GATTTCAAATACACC
Found at i:15011934 original size:16 final size:17
Alignment explanation
Indices: 15011908--15011939 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15011898 GGTTTTTTTT
15011908 TTTAGTTTCTTTAGTTC
1 TTTAGTTTCTTTAGTTC
15011925 TTTA-TTTCTTTAGTT
1 TTTAGTTTCTTTAGTT
15011940 AAGGTATTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.69
Consensus pattern (17 bp):
TTTAGTTTCTTTAGTTC
Found at i:15017557 original size:18 final size:19
Alignment explanation
Indices: 15017508--15017559 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
15017498 ATAATGCATA
*
15017508 AATATATAAAGAAAATACTT
1 AATATATAAA-AAAATACAT
15017528 AA-A-ATAACAAAAATA-AT
1 AATATATAA-AAAAATACAT
15017545 AATATATAAAAAAAT
1 AATATATAAAAAAAT
15017560 TAGAAAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
17 3 0.11
18 17 0.61
19 6 0.21
20 2 0.07
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (19 bp):
AATATATAAAAAAATACAT
Found at i:15018761 original size:14 final size:14
Alignment explanation
Indices: 15018742--15018780 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
15018732 TTCTAAAAAG
15018742 TTTTTCTTTTGTTT
1 TTTTTCTTTTGTTT
15018756 TTTTTCTTTTTGTTT
1 TTTTTC-TTTTGTTT
15018771 TATTTT-TTTT
1 T-TTTTCTTTT
15018781 TTTATGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 10 0.43
15 9 0.39
16 4 0.17
ACGTcount: A:0.03, C:0.05, G:0.05, T:0.87
Consensus pattern (14 bp):
TTTTTCTTTTGTTT
Found at i:15018766 original size:15 final size:15
Alignment explanation
Indices: 15018742--15018781 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
15018732 TTCTAAAAAG
15018742 TTTTTC-TTTTGTTT
1 TTTTTCTTTTTGTTT
15018756 TTTTTCTTTTTGTTT
1 TTTTTCTTTTTGTTT
15018771 TATTTT-TTTTT
1 T-TTTTCTTTTT
15018782 TTATGAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.25
15 14 0.58
16 4 0.17
ACGTcount: A:0.03, C:0.05, G:0.05, T:0.88
Consensus pattern (15 bp):
TTTTTCTTTTTGTTT
Found at i:15018771 original size:20 final size:20
Alignment explanation
Indices: 15018742--15018780 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15018732 TTCTAAAAAG
*
15018742 TTTTTCTTTTGTTTTTTTTC
1 TTTTTCTTTTATTTTTTTTC
*
15018762 TTTTTGTTTTATTTTTTTT
1 TTTTTCTTTTATTTTTTTT
15018781 TTTATGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.03, C:0.05, G:0.05, T:0.87
Consensus pattern (20 bp):
TTTTTCTTTTATTTTTTTTC
Found at i:15019275 original size:135 final size:134
Alignment explanation
Indices: 15018943--15019208 Score: 320
Period size: 135 Copynumber: 2.0 Consensus size: 134
15018933 ATTAGGATTG
* * ** * ** * * *
15018943 AACTTAGATTGAATCACAAGCCA-AAATATAAAGAGACCGGGATTAAACCATGAGTGAAAAAAAA
1 AACTTGGATTAAATCACAAATCAGAAA-ATAAAAAGACCAAGATTAAACCATAAGT-CAAAAAAT
* ** *
15019007 AATAACAATTGAGATTAAATTACGATTTTGGATTAAAGAAATCGAGATTGAATCATGAGTCAGAA
64 AACAACAATCAAGATTAAATTACGATTTTGGATTAAAGAAATCAAGATTGAATCA-GAGTCAGAA
*
15019072 TAACATC
128 TAACAAC
* *
15019079 AACTTGGATTAAATCACCAATCAGAAAATAAAAAGACCAAGATTAAACCATGAGTCAAAAAATAA
1 AACTTGGATTAAATCACAAATCAGAAAATAAAAAGACCAAGATTAAACCATAAGTCAAAAAATAA
15019144 CAACAATCAAGATTAAATTACGATTTTGGATTAAAGAAATCAAGATTGAACTGCA-AGTCAGAAT
66 CAACAATCAAGATTAAATTACGATTTTGGATTAAAGAAATCAAGATTGAA-T-CAGAGTCAGAAT
15019208 A
129 A
15019209 TAAAGAGATT
Statistics
Matches: 113, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
135 64 0.57
136 44 0.39
137 5 0.04
ACGTcount: A:0.49, C:0.13, G:0.15, T:0.23
Consensus pattern (134 bp):
AACTTGGATTAAATCACAAATCAGAAAATAAAAAGACCAAGATTAAACCATAAGTCAAAAAATAA
CAACAATCAAGATTAAATTACGATTTTGGATTAAAGAAATCAAGATTGAATCAGAGTCAGAATAA
CAAC
Found at i:15019436 original size:144 final size:144
Alignment explanation
Indices: 15019253--15019700 Score: 639
Period size: 144 Copynumber: 3.1 Consensus size: 144
15019243 TAAAGAGACT
* * * * * *
15019253 GGGATTAAACCGTAATTCAAAAACTATAAAAATGATCAGGATTAAACCATAAGTCAAAGATTAAA
1 GGGATTAAACCATGAGTC-AAAGCTATAAGAATGATCAGGATTAAACCACAAGTCAAAGATTAAA
* ** * * *
15019318 GATAATTGGGACTGAATTGCAAGTTAAAGAAATAAAAACGACTAAGATTAAACTGTAAGTCGAGA
65 GATAACTGGGACTGAACCGTAAGTCAAAGAAATAAAAACGACTAGGATTAAACT-TAAGTCGAGA
15019383 AGCTATAAGAATGA-C
129 AGCTATAAGAATGATC
* *
15019398 GGGATTAAACCATGAGTCAAAGCTATAAGAATGATCAGGATTAAACCACGAGTTAAAGATTAAAG
1 GGGATTAAACCATGAGTCAAAGCTATAAGAATGATCAGGATTAAACCACAAGTCAAAGATTAAAG
* *
15019463 ATAACTGGGACTGAACCGTAAGTCAAAGAAATAAAAACGAATAGGATTAAACCTTAAGTCAAGAA
66 ATAACTGGGACTGAACCGTAAGTCAAAGAAATAAAAACGACTAGGATTAAA-CTTAAGTCGAGAA
15019528 GCTATAAGAATGATC
130 GCTATAAGAATGATC
*
15019543 GGGATTAAATCATGAGTCAAAGCTATAAGAATGATC-GAGATTAAACCACAAGTCAAAGATTAAA
1 GGGATTAAACCATGAGTCAAAGCTATAAGAATGATCAG-GATTAAACCACAAGTCAAAGATTAAA
* * *
15019607 GATAACTGGCACTGAACCGTAAGTCAAAGAAATAAAAAATGACTAGGATTAAACCATAAGTCGAG
65 GATAACTGGGACTGAACCGTAAGTCAAAGAAAT-AAAAACGACTAGGATTAAA-CTTAAGTCGAG
15019672 AAGCTATAAGAATGATC
128 AAGCTATAAGAATGATC
*
15019689 GTGATTAAACCA
1 GGGATTAAACCA
15019701 CAGTTCGAAG
Statistics
Matches: 273, Mismatches: 26, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
144 110 0.40
145 109 0.40
146 54 0.20
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (144 bp):
GGGATTAAACCATGAGTCAAAGCTATAAGAATGATCAGGATTAAACCACAAGTCAAAGATTAAAG
ATAACTGGGACTGAACCGTAAGTCAAAGAAATAAAAACGACTAGGATTAAACTTAAGTCGAGAAG
CTATAAGAATGATC
Found at i:15019573 original size:36 final size:36
Alignment explanation
Indices: 15019382--15019700 Score: 179
Period size: 36 Copynumber: 8.8 Consensus size: 36
15019372 GTAAGTCGAG
15019382 AAGCTATAAGAATGA-CGGGATTAAACCATGAGTCA
1 AAGCTATAAGAATGATCGGGATTAAACCATGAGTCA
* * *
15019417 AAGCTATAAGAATGATCAGGATTAAACCACGAGTTA
1 AAGCTATAAGAATGATCGGGATTAAACCATGAGTCA
* * * * * *
15019453 AAGAT-TAA-AGAT-AACTGGGACTGAACCGTAAGTCA
1 AAGCTATAAGA-ATGATC-GGGATTAAACCATGAGTCA
** * * * * *
15019488 AAGAAATAAAAACGAAT-AGGATTAAACCTTAAGTCAA
1 AAGCTATAAGAATG-ATCGGGATTAAACCATGAGTC-A
*
15019525 GAAGCTATAAGAATGATCGGGATTAAATCATGAGTCA
1 -AAGCTATAAGAATGATCGGGATTAAACCATGAGTCA
* **
15019562 AAGCTATAAGAATGATCGAGATTAAACCACAAGTCA
1 AAGCTATAAGAATGATCGGGATTAAACCATGAGTCA
* * * * * * *
15019598 AAGAT-TAA-AGAT-AACTGGCACTGAACCGTAAGTCA
1 AAGCTATAAGA-ATGATC-GGGATTAAACCATGAGTCA
** * * *
15019633 AAGAAATAAAAAATGA-CTAGGATTAAACCATAAGTCGA
1 AAGCTAT-AAGAATGATC-GGGATTAAACCATGAGTC-A
*
15019671 GAAGCTATAAGAATGATCGTGATTAAACCA
1 -AAGCTATAAGAATGATCGGGATTAAACCA
15019701 CAGTTCGAAG
Statistics
Matches: 215, Mismatches: 50, Indels: 35
0.72 0.17 0.12
Matches are distributed among these distances:
34 6 0.03
35 58 0.27
36 76 0.35
37 24 0.11
38 45 0.21
39 6 0.03
ACGTcount: A:0.46, C:0.13, G:0.19, T:0.21
Consensus pattern (36 bp):
AAGCTATAAGAATGATCGGGATTAAACCATGAGTCA
Found at i:15019679 original size:110 final size:109
Alignment explanation
Indices: 15019544--15019824 Score: 392
Period size: 109 Copynumber: 2.6 Consensus size: 109
15019534 AGAATGATCG
* *
15019544 GGATTAAATCATGAGTC-A-AAGCTATAAGAATGATCGAGATTAAACCACAAGTCAAAGATTAAA
1 GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATCGAGATTAAACCACAAGTCAAAGATTAAA
*
15019607 GATAACTGGCACTGAACCGTAAGTCAAAGAAATAAAAAATGACTA
66 GATAACTGGCACTGAACCGCAAGTCAAAGAAAT-AAAAATGACTA
* *
15019652 GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATCGTGATTAAACCAC-AGTTCGAAGATTAA
1 GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATCGAGATTAAACCACAAG-TCAAAGATTAA
* * * * *
15019716 AGATAATTGGGATTGAACTGCAAGTCAAAGAAATAAAAGTGACTA
65 AGATAACTGGCACTGAACCGCAAGTCAAAGAAATAAAAATGACTA
*
15019761 GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATC-AGGATTAAACGACGAA-TCAAAGATTA
1 GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATCGA-GATTAAACCAC-AAGTCAAAGATTA
15019824 A
64 A
15019825 CGACGATCGA
Statistics
Matches: 154, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
108 15 0.10
109 70 0.45
110 68 0.44
111 1 0.01
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (109 bp):
GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATCGAGATTAAACCACAAGTCAAAGATTAAA
GATAACTGGCACTGAACCGCAAGTCAAAGAAATAAAAATGACTA
Found at i:15019777 original size:36 final size:35
Alignment explanation
Indices: 15019338--15019777 Score: 137
Period size: 36 Copynumber: 12.1 Consensus size: 35
15019328 ACTGAATTGC
* * * **
15019338 AAGTTAAAGAAATAAAAACGACTAAGATTAAACTGT
1 AAGTCAAAGAAAT-AAAATGACTAGGATTAAACCAT
** *
15019374 AAGTCGAGAAGCTATAAGAATGAC-GGGATTAAACCAT
1 AAGTC-A-AAGAAATAA-AATGACTAGGATTAAACCAT
* ** *
15019411 GAGTCAAAGCTATAAGAATGA-TCAGGATTAAACCAC
1 AAGTCAAAGAAATAA-AATGACT-AGGATTAAACCAT
* * * * * * * *
15019447 GAGTTAAAG-ATTAAAGATAACTGGGACTGAACCGT
1 AAGTCAAAGAAATAAA-ATGACTAGGATTAAACCAT
* * *
15019482 AAGTCAAAGAAATAAAAACGAATAGGATTAAACCTT
1 AAGTCAAAGAAAT-AAAATGACTAGGATTAAACCAT
* *
15019518 AAGTC-AAGAAGCTATAAGAATGA-TCGGGATTAAATCAT
1 AAGTCAAAGAA---ATAA-AATGACT-AGGATTAAACCAT
* ** * *
15019556 GAGTCAAAGCTATAAGAATGA-TCGAGATTAAACCAC
1 AAGTCAAAGAAATAA-AATGACTAG-GATTAAACCAT
* * * * *
15019592 AAGTCAAAG-ATTAAAGATAACT-GGCACTGAACCGT
1 AAGTCAAAGAAATAAA-ATGACTAGG-ATTAAACCAT
15019627 AAGTCAAAGAAATAAAAAATGACTAGGATTAAACCAT
1 AAGTCAAAGAAAT--AAAATGACTAGGATTAAACCAT
** *
15019664 AAGTCGAGAAGCTATAAGAATGA-TCGTGATTAAACCA-
1 AAGTC-A-AAGAAATAA-AATGACTAG-GATTAAACCAT
* * * * * * * ***
15019701 CAGTTCGAAG-ATTAAAGATAATTGGGATTGAACTGC
1 AAG-TCAAAGAAATAAA-ATGACTAGGATTAAACCAT
15019737 AAGTCAAAGAAATAAAAGTGACTAGGATTAAACCAT
1 AAGTCAAAGAAATAAAA-TGACTAGGATTAAACCAT
15019773 AAGTC
1 AAGTC
15019778 GAGAAGCTAT
Statistics
Matches: 296, Mismatches: 75, Indels: 66
0.68 0.17 0.15
Matches are distributed among these distances:
34 4 0.01
35 83 0.28
36 103 0.35
37 45 0.15
38 53 0.18
39 8 0.03
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.21
Consensus pattern (35 bp):
AAGTCAAAGAAATAAAATGACTAGGATTAAACCAT
Found at i:15019839 original size:109 final size:107
Alignment explanation
Indices: 15019544--15019863 Score: 362
Period size: 109 Copynumber: 2.9 Consensus size: 107
15019534 AGAATGATCG
* *
15019544 GGATTAAATCATGAGTC-A-AAGCTATAAGAATGATCGAGATTAAACCACAAGTCAAAGATTAAA
1 GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATCGAGATTAAACCACAA-TCAAAGATTAAA
* * *
15019607 GATAA-CTGGCACTGAACCGTAAGTCAAAGAAATAAAAAATGACTA
65 GA-AATC-GG-ATTGAACTGCAAGTCAAAGAAATAAAAAATGACTA
* * *
15019652 GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATCGTGATTAAACCACAGTTCGAAGATTAAA
1 GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATCGAGATTAAACCACA-ATCAAAGATTAAA
* *
15019717 GATAATTGGGATTGAACTGCAAGTCAAAGAAAT-AAAAGTGACTA
65 GA-AA-TCGGATTGAACTGCAAGTCAAAGAAATAAAAAATGACTA
*
15019761 GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATC-AGGATTAAACGACGAATCAAAGATTAA
1 GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATCGA-GATTAAACCAC-AATCAAAGATTAA
* * * **
15019825 CGACGATCGAGATTGAACTGCAAGTTAGGGAAATAAAAA
64 AGA-AATCG-GATTGAACTGCAAGTCAAAGAAATAAAAA
15019864 TAACCATAAA
Statistics
Matches: 182, Mismatches: 21, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
108 17 0.09
109 92 0.51
110 71 0.39
111 2 0.01
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (107 bp):
GGATTAAACCATAAGTCGAGAAGCTATAAGAATGATCGAGATTAAACCACAATCAAAGATTAAAG
AAATCGGATTGAACTGCAAGTCAAAGAAATAAAAAATGACTA
Found at i:15020931 original size:14 final size:15
Alignment explanation
Indices: 15020908--15020953 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 15
15020898 TTCCTTTCTC
15020908 TTTT-TTTATTT-TT
1 TTTTATTTATTTATT
15020921 TTTTATTTATTTATT
1 TTTTATTTATTTATT
* *
15020936 TTTTGTTT-TGTATT
1 TTTTATTTATTTATT
15020950 TTTT
1 TTTT
15020954 TGTTTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 4 0.14
14 16 0.55
15 9 0.31
ACGTcount: A:0.11, C:0.00, G:0.04, T:0.85
Consensus pattern (15 bp):
TTTTATTTATTTATT
Found at i:15020949 original size:18 final size:19
Alignment explanation
Indices: 15020912--15020962 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
15020902 TTTCTCTTTT
*
15020912 TTTATTTTTT-TTTATTTA
1 TTTATTTTTTGTTTATGTA
15020930 TTTATTTTTTGTTT-TGTA
1 TTTATTTTTTGTTTATGTA
*
15020948 TTTTTTTGTTTGTTT
1 TTTATTT-TTTGTTT
15020963 GTTTCTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 19 0.66
19 10 0.34
ACGTcount: A:0.10, C:0.00, G:0.08, T:0.82
Consensus pattern (19 bp):
TTTATTTTTTGTTTATGTA
Found at i:15033547 original size:10 final size:10
Alignment explanation
Indices: 15033534--15033562 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
15033524 AAAAAAACAA
15033534 ACAAAAAAAT
1 ACAAAAAAAT
15033544 ACAAAAAAA-
1 ACAAAAAAAT
15033553 ACAAAAAAAT
1 ACAAAAAAAT
15033563 TAAAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.83, C:0.10, G:0.00, T:0.07
Consensus pattern (10 bp):
ACAAAAAAAT
Found at i:15033549 original size:9 final size:9
Alignment explanation
Indices: 15033526--15033561 Score: 54
Period size: 10 Copynumber: 3.8 Consensus size: 9
15033516 TTGCTTTAAA
15033526 AAAAACAAAC
1 AAAAA-AAAC
15033536 AAAAAAATAC
1 AAAAAAA-AC
15033546 AAAAAAAAC
1 AAAAAAAAC
15033555 AAAAAAA
1 AAAAAAA
15033562 TTAAAAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 11 0.44
10 14 0.56
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.03
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:15033568 original size:19 final size:18
Alignment explanation
Indices: 15033525--15033570 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
15033515 TTTGCTTTAA
15033525 AAAAAACAAACAAAAAAAT
1 AAAAAA-AAACAAAAAAAT
15033544 ACAAAAAAAACAAAAAAATT
1 A-AAAAAAAACAAAAAAA-T
15033564 AAAAAAA
1 AAAAAAA
15033571 GAGAAAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.85, C:0.09, G:0.00, T:0.07
Consensus pattern (18 bp):
AAAAAAAAACAAAAAAAT
Found at i:15034596 original size:110 final size:110
Alignment explanation
Indices: 15034369--15034619 Score: 364
Period size: 110 Copynumber: 2.3 Consensus size: 110
15034359 AATCTTTGAT
15034369 TCGTGGTTTAATCCTGATCATTCTTATAGCTTCTCAACTAACGATTTAATCCTAGTCGCTTTTAT
1 TCGTGGTTTAATCCTGATCATTCTTATAGCTTCTCAACTAACGATTTAATCCTAGTCGCTTTTAT
* *
15034434 TTCTTTGACTTGCAATTCAATCCCAGTTGTCTTTAATCTTCAAAC
66 TTCTTTAACTTGCAATTCAATCCCAGTTATCTTTAATCTTCAAAC
* * * **
15034479 T-GTGGTTTACTCCTGATCATTCTTATAGCTTCTCGACTTAC-AGTTTAATCCTAGTCATTTTTT
1 TCGTGGTTTAATCCTGATCATTCTTATAGCTTCTCAACTAACGA-TTTAATCCTAGTC-GCTTTT
* * **
15034542 ATTTCTTTAACTTGCAGTTCAGTCCCAGTTATCTTTAAT-TTTTAAC
64 ATTTCTTTAACTTGCAATTCAATCCCAGTTATCTTTAATCTTCAAAC
15034588 TCGTGGTTTAATCCTGATCATTCTTATAGCTT
1 TCGTGGTTTAATCCTGATCATTCTTATAGCTT
15034620 TGACTCATGG
Statistics
Matches: 126, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
108 1 0.01
109 56 0.44
110 69 0.55
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.45
Consensus pattern (110 bp):
TCGTGGTTTAATCCTGATCATTCTTATAGCTTCTCAACTAACGATTTAATCCTAGTCGCTTTTAT
TTCTTTAACTTGCAATTCAATCCCAGTTATCTTTAATCTTCAAAC
Found at i:15034645 original size:36 final size:38
Alignment explanation
Indices: 15034586--15034674 Score: 119
Period size: 36 Copynumber: 2.4 Consensus size: 38
15034576 TTAATTTTTA
* *
15034586 ACTCGTGGTTTAATCCTGATCATTCTTATAGCTT-T-G
1 ACTCATGGTTTAATCCCGATCATTCTTATAGCTTCTCG
*
15034622 ACTCATGGTTTAATCCCGGTCATTCTTATAGCTTCTCG
1 ACTCATGGTTTAATCCCGATCATTCTTATAGCTTCTCG
* *
15034660 ACTTATGATTTAATC
1 ACTCATGGTTTAATC
15034675 TTAGTCGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
36 31 0.67
37 1 0.02
38 14 0.30
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (38 bp):
ACTCATGGTTTAATCCCGATCATTCTTATAGCTTCTCG
Found at i:15034740 original size:145 final size:146
Alignment explanation
Indices: 15034481--15034761 Score: 415
Period size: 145 Copynumber: 1.9 Consensus size: 146
15034471 CTTCAAACTG
* * *
15034481 TGGTTTACTCCTGATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCATTTTTTATTT
1 TGGTTTAATCCCGATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCAGTTTTTATTT
* *
15034546 CTTTAACTTGCAGTTCAGTCCCAGTTATCTTTAATTTTTAACTCGTGGTTTAATCCTGATCATTC
66 CTTTAACTTGCAGTTCAGTCCCAGTTATCTTTAATCTTTAACTCATGGTTTAATCCTGATCATTC
15034611 TTATAGCTTTGACTCA
131 TTATAGCTTTGACTCA
* * *
15034627 TGGTTTAATCCCGGTCATTCTTATAGCTTCTCGACTTA-TGATTTAATCTTAGTC-GTTTTTATT
1 TGGTTTAATCCCGATCATTCTTATAGCTTCTCGACTTACAG-TTTAATCCTAGTCAGTTTTTATT
* * *
15034690 TCTTTGACTTGC-GATTCAGTCCTAGTTATCTTTAATCTTTGACTCATGGTTTAATCCTGATCAT
65 TCTTTAACTTGCAG-TTCAGTCCCAGTTATCTTTAATCTTTAACTCATGGTTTAATCCTGATCAT
*
15034754 TTTTATAG
129 TCTTATAG
15034762 TTTTTGAATT
Statistics
Matches: 121, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
144 1 0.01
145 73 0.60
146 47 0.39
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (146 bp):
TGGTTTAATCCCGATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCAGTTTTTATTT
CTTTAACTTGCAGTTCAGTCCCAGTTATCTTTAATCTTTAACTCATGGTTTAATCCTGATCATTC
TTATAGCTTTGACTCA
Found at i:15034795 original size:145 final size:146
Alignment explanation
Indices: 15034494--15034795 Score: 387
Period size: 145 Copynumber: 2.1 Consensus size: 146
15034484 TTTACTCCTG
* *
15034494 ATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCATTTTTTATTTCTTTAACTTGCAG
1 ATCATCCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCAGTTTTTATTTCTTTAACTTGCAG
* * *
15034559 TTCAGTCCCAGTTATCTTTAATTTTTAACTCGTGGTTTAATCCTGATCATTCTTATAGCTTTGAC
66 TTCAGTCCCAGTTATCTTTAATCTTTAACTCATGGTTTAATCCTGATCATTCTTATAGCTTTGAA
* *
15034624 TCATGGTTTAATCCCG
131 TCACGGTTTAATCCCA
* * * * *
15034640 GTCATTCTTATAGCTTCTCGACTTA-TGATTTAATCTTAGTC-GTTTTTATTTCTTTGACTTGC-
1 ATCATCCTTATAGCTTCTCGACTTACAG-TTTAATCCTAGTCAGTTTTTATTTCTTTAACTTGCA
* * * *
15034702 GATTCAGTCCTAGTTATCTTTAATCTTTGACTCATGGTTTAATCCTGATCATTTTTATAGTTTTT
65 G-TTCAGTCCCAGTTATCTTTAATCTTTAACTCATGGTTTAATCCTGATCATTCTTATAG-CTTT
* *
15034767 GAATTACGGTTTAATCTCA
128 GAATCACGGTTTAATCCCA
15034786 ATC-TCCTTAT
1 ATCATCCTTAT
15034796 TTTTTAATTT
Statistics
Matches: 135, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
144 1 0.01
145 79 0.59
146 55 0.41
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.48
Consensus pattern (146 bp):
ATCATCCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCAGTTTTTATTTCTTTAACTTGCAG
TTCAGTCCCAGTTATCTTTAATCTTTAACTCATGGTTTAATCCTGATCATTCTTATAGCTTTGAA
TCACGGTTTAATCCCA
Found at i:15034983 original size:135 final size:135
Alignment explanation
Indices: 15034829--15035093 Score: 354
Period size: 135 Copynumber: 2.0 Consensus size: 135
15034819 AATCTCTTTA
* *
15034829 TATTCTGACTCGCGGTTCAATC-CTGATTTCTTTAATCAAAAATAGTAGTTTAATCTCGATTGTT
1 TATTCTGACTCACGGTTCAATCTC-GATTTCTTTAATCAAAAATAGTAATTTAATCTCGATTGTT
* * * * *
15034893 GTTATTTTT-TTACTCATGGTTTAATCATGGTCTCTTTATTTTTTGACTGGTGATTCAATCCAAG
65 ATT-TTTTTCTGACTCATGGTTTAATCACGGTCTCTTTATATTTTAACTGGTGATTCAATCCAAG
15034957 TTGATGT
129 TTGATGT
* * *
15034964 TATTCTGACTCATGGTTCAATCTCGATTTCTTTAATCTAAAATCGTAATTTAATCTCGATTGTTA
1 TATTCTGACTCACGGTTCAATCTCGATTTCTTTAATCAAAAATAGTAATTTAATCTCGATTGTTA
** * * * *
15035029 TTTTTTTCTGACTTGTGGTTTAATCCCGGTCTCTTTATATTTTAAGTTGTGATTCAATCTAAGTT
66 TTTTTTTCTGACTCATGGTTTAATCACGGTCTCTTTATATTTTAACTGGTGATTCAATCCAAGTT
15035094 CAATCCTGAT
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
134 5 0.04
135 106 0.95
136 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.14, T:0.48
Consensus pattern (135 bp):
TATTCTGACTCACGGTTCAATCTCGATTTCTTTAATCAAAAATAGTAATTTAATCTCGATTGTTA
TTTTTTTCTGACTCATGGTTTAATCACGGTCTCTTTATATTTTAACTGGTGATTCAATCCAAGTT
GATGT
Found at i:15035273 original size:14 final size:14
Alignment explanation
Indices: 15035256--15035293 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
15035246 CATTCATCAA
15035256 AAAAAAAAAAAAAC
1 AAAAAAAAAAAAAC
*
15035270 AAAAACAAAAAAAC
1 AAAAAAAAAAAAAC
15035284 AAAAGAAAAA
1 AAAA-AAAAA
15035294 CTTTTAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.89, C:0.08, G:0.03, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAAC
Found at i:15035279 original size:19 final size:19
Alignment explanation
Indices: 15035257--15035294 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
15035247 ATTCATCAAA
15035257 AAAAAAAAAAAACAAAAAC
1 AAAAAAAAAAAACAAAAAC
* *
15035276 AAAAAAACAAAAGAAAAAC
1 AAAAAAAAAAAACAAAAAC
15035295 TTTTAAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.87, C:0.11, G:0.03, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAACAAAAAC
Found at i:15036494 original size:18 final size:19
Alignment explanation
Indices: 15036473--15036524 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
15036463 TATTTTCTAA
*
15036473 ATTTTTTTATATATT-ATT
1 ATTTTTTTATATATTAAAT
15036491 ATTTTTATTAT-T-TTAAAT
1 ATTTTT-TTATATATTAAAT
15036509 ATTTTCTTTATATATT
1 ATTTT-TTTATATATT
15036525 TATGCATGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
17 2 0.07
18 18 0.64
19 6 0.21
20 2 0.07
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (19 bp):
ATTTTTTTATATATTAAAT
Found at i:15036794 original size:21 final size:20
Alignment explanation
Indices: 15036768--15036823 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 20
15036758 CTAATAATAT
15036768 TTTTTTCATAAAAAAG-GAACC
1 TTTTTT-ATAAAAAAGAGAA-C
*
15036789 TTTTTTTTTAAAAAAGAGAAC
1 -TTTTTTATAAAAAAGAGAAC
*
15036810 ATTTTTATAAAAAA
1 TTTTTTATAAAAAA
15036824 AATATGTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 12 0.40
21 9 0.30
22 9 0.30
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (20 bp):
TTTTTTATAAAAAAGAGAAC
Found at i:15036795 original size:22 final size:22
Alignment explanation
Indices: 15036766--15036825 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
15036756 AGCTAATAAT
15036766 ATTTTTTTCATAAAAAAG-GAAC
1 ATTTTTTT-ATAAAAAAGAGAAC
* *
15036788 CTTTTTTTTTAAAAAAGAGAAC
1 ATTTTTTTATAAAAAAGAGAAC
* *
15036810 ATTTTTATAAAAAAAA
1 ATTTTTTTATAAAAAA
15036826 TATGTTTCTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
21 8 0.26
22 23 0.74
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (22 bp):
ATTTTTTTATAAAAAAGAGAAC
Found at i:15050733 original size:28 final size:27
Alignment explanation
Indices: 15050694--15050760 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
15050684 TAATTAATGG
15050694 AAAAATAAAATTTTCAAAAACAGAATT-A
1 AAAAATAAAATTTT--AAAACAGAATTCA
* *
15050722 AAAAATCAAATTTTAAAATAGAATTCAA
1 AAAAATAAAATTTTAAAACAGAATTC-A
15050750 AAAAATAAAAT
1 AAAAATAAAAT
15050761 AAAAGGATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.29
28 24 0.71
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.25
Consensus pattern (27 bp):
AAAAATAAAATTTTAAAACAGAATTCA
Found at i:15050772 original size:33 final size:34
Alignment explanation
Indices: 15050735--15050799 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
15050725 AATCAAATTT
15050735 TAAAATAGAATTCAA-AAAAAT-AAAATAAAAGGA
1 TAAAATAG-ATTCAATAAAAATAAAAATAAAAGGA
*
15050768 TAAAATAGATTTAATTAAAAATAAAAATAAAA
1 TAAAATAGATTCAA-TAAAAATAAAAATAAAA
15050800 TAAAAGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 5 0.18
33 8 0.29
34 6 0.21
35 9 0.32
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (34 bp):
TAAAATAGATTCAATAAAAATAAAAATAAAAGGA
Found at i:15050794 original size:40 final size:39
Alignment explanation
Indices: 15050750--15050834 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 39
15050740 TAGAATTCAA
* *
15050750 AAAAATAAAATAAAAGGATAAAATAGAT-TTAATTAAAAAT
1 AAAAATAAAATAAAAGAATAAAA-ACATATTAATT-AAAAT
15050790 AAAAATAAAATAAAAGAATAAAAACATAATTAATTAAAAT
1 AAAAATAAAATAAAAGAATAAAAACAT-ATTAATTAAAAT
15050830 AAAAA
1 AAAAA
15050835 CCCAGAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
39 3 0.07
40 32 0.78
41 6 0.15
ACGTcount: A:0.72, C:0.01, G:0.05, T:0.22
Consensus pattern (39 bp):
AAAAATAAAATAAAAGAATAAAAACATATTAATTAAAAT
Found at i:15059705 original size:120 final size:119
Alignment explanation
Indices: 15059566--15060059 Score: 444
Period size: 120 Copynumber: 4.2 Consensus size: 119
15059556 TATATATATT
* *
15059566 TTTTTTGAAAATTTTATTTTCAAAGAAAATTGATCTCTCAACTTTTCCTTAAAAGAATTTTTTTT
1 TTTTTTGAAAATTTTATTTTCAAAGAAAATTGATCTTTCAACTTTTCCTTAAAA-AA--TATTTT
* *
15059631 TTTGAAAATTTTATATTTCAAGGAAAATTGACGTTTTCAACTTTTCCTT-AAAAA-CG
63 TTTGAAAATTTTAT-TTTCAAGGAAAATTGATGCTTTCAACTTTTCCTTGAAAAATCG
* * * * * * *
15059687 -TTTTTGACAATTTAATTTTAAAAAAAAATTGA-CATTTTCAATTTTTTCTT-AAAAATGTTTTT
1 TTTTTTGAAAATTTTATTTTCAAAGAAAATTGATC--TTTCAACTTTTCCTTAAAAAATATTTTT
* * * *
15059749 TTGAAAATTTTACTTCCAAGGAAAATTGATACTTTCAACTTTTCCTTGAAAAATGG
64 TTGAAAATTTTATTTTCAAGGAAAATTGATGCTTTCAACTTTTCCTTGAAAAATCG
***
15059805 TTTTTTTTTTAATTTTATTTTC-AAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAAATATTT
1 -TTTTTTGAAAATTTTATTTTCAAAG-AAAATTGAT-CTTTCAACTTTTCCTT-AAAAAATATTT
* * *
15059869 TTTTGAAATTTTTATTTTCAAGGAAAATTGATGCTTTCAA-TTTTTC-TCAAAAAT-G
62 TTTTGAAAATTTTATTTTCAAGGAAAATTGATGCTTTCAACTTTTCCTTGAAAAATCG
** * * * *
15059924 CCTTTTGAAAATTTTTATTTTC-AAGAAAAATTAATATTTTTAATTTTTCCTT--AAAAT-TTTT
1 TTTTTTGAAAA-TTTTATTTTCAAAG-AAAATTGAT-CTTTCAACTTTTCCTTAAAAAATATTTT
* * * **
15059985 TTT--TAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAAT-G
63 TTTGAAAATTTTATTTTCAAGGAAAATTGATGCTTTCAACTTTTCCTTGAAAAATCG
* *
15060039 CCTTTTTAAAAATTTTATTTT
1 -TTTTTTGAAAATTTTATTTT
15060060 AAAAAGATCA
Statistics
Matches: 311, Mismatches: 47, Indels: 36
0.79 0.12 0.09
Matches are distributed among these distances:
113 30 0.10
114 5 0.02
115 23 0.07
116 44 0.14
117 23 0.07
118 7 0.02
119 42 0.14
120 74 0.24
121 17 0.05
122 46 0.15
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.48
Consensus pattern (119 bp):
TTTTTTGAAAATTTTATTTTCAAAGAAAATTGATCTTTCAACTTTTCCTTAAAAAATATTTTTTT
GAAAATTTTATTTTCAAGGAAAATTGATGCTTTCAACTTTTCCTTGAAAAATCG
Found at i:15059749 original size:58 final size:58
Alignment explanation
Indices: 15059566--15060059 Score: 444
Period size: 61 Copynumber: 8.3 Consensus size: 58
15059556 TATATATATT
* *
15059566 TTTTTTGAAAATTTTATTTTCAA-AGAAAATTGAT-CTCTCAACTTTTCCTTAAAAGAATTTTT
1 TTTTTTGAAAATTTTATTTTCAAGA-AAAATTGATACTTTCAACTTTTCCTT-AAA-AA---TG
* *** *
15059628 TTTTTTGAAAATTTTATATTTCAAGGAAAATTGACGTTTTCAACTTTTCCTTAAAAACG
1 TTTTTTGAAAATTTTAT-TTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATG
* * * * * * * *
15059687 -TTTTTGACAATTTAATTTTAAAAAAAAATTGACATTTTCAATTTTTTCTTAAAAATG
1 TTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATG
* * *
15059744 TTTTTTTGAAAATTTTACTTCCAAGGAAAATTGATACTTTCAACTTTTCCTTGAAAAATGG
1 -TTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTT-AAAAAT-G
*** *
15059805 TTTTTTTTTTAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAAATAT
1 -TTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTT--AAAAAT-G
* * * * *
15059867 TTTTTTGAAATTTTTATTTTCAAGGAAAATTGATGCTTTCAA-TTTTTCTCAAAAATG
1 TTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATG
** * * * *
15059924 CCTTTTGAAAATTTTTATTTTCAAGAAAAATTAATATTTTTAATTTTTCCTT-AAAAT-
1 TTTTTTGAAAA-TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATG
** *
15059981 TTTTTT-TTAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAATG
1 TTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCT-TAAAAATG
* *
15060039 CCTTTTTAAAAATTTTATTTT
1 -TTTTTTGAAAATTTTATTTT
15060060 AAAAAGATCA
Statistics
Matches: 351, Mismatches: 66, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
55 35 0.10
56 2 0.01
57 51 0.15
58 51 0.15
59 50 0.14
60 23 0.07
61 83 0.24
62 25 0.07
63 17 0.05
64 14 0.04
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.48
Consensus pattern (58 bp):
TTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATG
Found at i:15059835 original size:61 final size:59
Alignment explanation
Indices: 15059512--15060035 Score: 388
Period size: 61 Copynumber: 8.8 Consensus size: 59
15059502 AATCTTTATT
* * * * *
15059512 TTTTATCTTGAAGGAAAATTGATACTTTC-ACTTTTCCTCAAAAATATATATATTTTTTTTGAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCT-TAAAA-ATGT-T-TTTTTTTT---A
15059576 A
59 A
*
15059577 TTTTATTTTCAA-AGAAAATTGAT-CTCTCAACTTTTCCTTAAAAGAAT-TTTTTTTTTTGAAAA
1 TTTTATTTTCAAGA-AAAATTGATACTTTCAACTTTTCCTT-AAA-AATGTTTTTTTTTT---AA
* *** * ***
15059639 TTTTATATTTCAAGGAAAATTGACGTTTTCAACTTTTCCTTAAAAACG--TTTTTGACAA
1 TTTTAT-TTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTAA
* * * * * * * ***
15059697 TTTAATTTTAAAAAAAAATTGACATTTTCAATTTTTTCTTAAAAATGTTTTTTTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTAA
* * *
15059756 TTTTACTTCCAAGGAAAATTGATACTTTCAACTTTTCCTTGAAAAATGGTTTTTTTTTTAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTT-AAAAAT-GTTTTTTTTTTAA
** **
15059817 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAAATATTTTTTTGAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGT-TTTTTTTTTAA
* * * * ** ***
15059877 TTTTTATTTTCAAGGAAAATTGATGCTTTCAA-TTTTTCTCAAAAATG-CCTTTTGAAAA
1 -TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTAA
* * * *
15059935 TTTTTATTTTCAAGAAAAATTAATATTTTTAATTTTTCCTT-AAAA---TTTTTTTTTAA
1 -TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTAA
*
15059991 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAA
15060036 ATGCCTTTTT
Statistics
Matches: 374, Mismatches: 69, Indels: 41
0.77 0.14 0.08
Matches are distributed among these distances:
55 35 0.09
56 10 0.03
57 34 0.09
58 45 0.12
59 46 0.12
60 31 0.08
61 81 0.22
62 21 0.06
63 18 0.05
64 19 0.05
65 33 0.09
66 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.48
Consensus pattern (59 bp):
TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTAA
Found at i:15059915 original size:180 final size:177
Alignment explanation
Indices: 15059565--15060064 Score: 534
Period size: 180 Copynumber: 2.8 Consensus size: 177
15059555 ATATATATAT
* *
15059565 TTTTTTTGAAAATTTTATTTTCAAAGAAAATTGAT-CTCTCAACTTTTCCTTAAAAGAATTTTTT
1 TTTTTTTGAAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTT-AAA-AATTTTTT
* ***
15059629 TTTTTGAAAATTTTATATTTCAAGGAAAATTGACGTTTTCAACTTTTCCTT---AAAAACGTTTT
64 TTTTT---AATTTTAT-TTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAAAACGTTTT
* *
15059691 TGACAATTTAATTTTAAAAAAAAATTGACATTTTCAATTTTTTCTTAAAAATG
125 TGACAATTTAATTTTAAAAAAAAATTGACACTTTCAATTTTTTCTCAAAAATG
* *
15059744 TTTTTTTGAAAATTTTACTTCCAAGGAAAATTGATACTTTCAACTTTTCCTTGAAAAATGGTTTT
1 TTTTTTTGAAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTT-AAAAAT--TTTT
**
15059809 TTTTTTAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAAATATTTTTTTG
63 TTTTTTAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAAA-ACGTTTTTG
* * ** **
15059874 A-AATTTTTATTTTCAAGGAAAATTGATGCTTTCAA-TTTTTCTCAAAAATG
127 ACAA-TTTAATTTTAAAAAAAAATTGACACTTTCAATTTTTTCTCAAAAATG
** * * * * *
15059924 -CCTTTTGAAAATTTTTATTTTCAAGAAAAATTAATATTTTTAATTTTTCCTT-AAAA--TTTTT
1 TTTTTTTGAAAA-TTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATTTTTTT
* ** * * *
15059985 TTTTAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAATGCCTTTTTAAAA
65 TTTTAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAAAACGTTTTTGACA
*
15060050 ATTTTATTTTAAAAA
130 ATTTAATTTTAAAAA
15060065 GATCATTGAA
Statistics
Matches: 274, Mismatches: 37, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
173 17 0.06
174 58 0.21
177 30 0.11
178 12 0.04
179 44 0.16
180 71 0.26
181 42 0.15
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.48
Consensus pattern (177 bp):
TTTTTTTGAAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATTTTTTTT
TTTAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAAAACGTTTTTGACAA
TTTAATTTTAAAAAAAAATTGACACTTTCAATTTTTTCTCAAAAATG
Found at i:15060138 original size:26 final size:27
Alignment explanation
Indices: 15060087--15060139 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
15060077 TTAAAGAATG
* *
15060087 TTTAATTAAATAAATAAATTATTTTAA
1 TTTAATTAAATAAATAAATAAATTTAA
15060114 TTTAA-TAAATAAAT-AATAAAATTTAA
1 TTTAATTAAATAAATAAAT-AAATTTAA
15060140 AAAATAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 3 0.13
26 15 0.65
27 5 0.22
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
TTTAATTAAATAAATAAATAAATTTAA
Found at i:15060589 original size:11 final size:11
Alignment explanation
Indices: 15060573--15060597 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15060563 CTAATTCTAG
15060573 AATTTCCAAAA
1 AATTTCCAAAA
15060584 AATTTCCAAAA
1 AATTTCCAAAA
15060595 AAT
1 AAT
15060598 GACAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (11 bp):
AATTTCCAAAA
Found at i:15061522 original size:34 final size:34
Alignment explanation
Indices: 15061494--15061567 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
15061484 CAAGAATTTT
**
15061494 AGATTTGCAAGTTTTGGAGATTCACAAGACATTC
1 AGATTTGCAAGAATTGGAGATTCACAAGACATTC
* *
15061528 AGATTTGCAAGAATTGGAGATTCATAAAAACATTC
1 AGATTTGCAAGAATTGGAGATTCA-CAAGACATTC
15061563 AGATT
1 AGATT
15061568 CACAAAGCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
34 22 0.63
35 13 0.37
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (34 bp):
AGATTTGCAAGAATTGGAGATTCACAAGACATTC
Found at i:15061548 original size:17 final size:17
Alignment explanation
Indices: 15061479--15061549 Score: 63
Period size: 17 Copynumber: 4.2 Consensus size: 17
15061469 GGATTCAAAA
**
15061479 ATTTGCAAGAATTTTAG
1 ATTTGCAAGAATTGGAG
**
15061496 ATTTGCAAGTTTTGGAG
1 ATTTGCAAGAATTGGAG
** *
15061513 ATTCACAAGACATT-CAG
1 ATTTGCAAGA-ATTGGAG
15061530 ATTTGCAAGAATTGGAG
1 ATTTGCAAGAATTGGAG
15061547 ATT
1 ATT
15061550 CATAAAAACA
Statistics
Matches: 40, Mismatches: 12, Indels: 4
0.71 0.21 0.07
Matches are distributed among these distances:
16 3 0.08
17 35 0.88
18 2 0.05
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (17 bp):
ATTTGCAAGAATTGGAG
Found at i:15061641 original size:17 final size:17
Alignment explanation
Indices: 15061621--15061669 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
15061611 TTCAGATTCA
15061621 CAAGAATTGAAGATTTG
1 CAAGAATTGAAGATTTG
** **
15061638 CAAGGCTTTCAGATTTG
1 CAAGAATTGAAGATTTG
*
15061655 CAAGAATTGGAGATT
1 CAAGAATTGAAGATT
15061670 CATAAAGTTT
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.31
Consensus pattern (17 bp):
CAAGAATTGAAGATTTG
Found at i:15061648 original size:34 final size:34
Alignment explanation
Indices: 15061610--15061722 Score: 118
Period size: 34 Copynumber: 3.3 Consensus size: 34
15061600 TTCACAAAGT
*
15061610 TTTCAGATTCACAAGAATTGAAGATTTGCAAGGC
1 TTTCAGATTCACAAGAATTGAAGATTTGTAAGGC
** * ** * *
15061644 TTTCAGATTTGCAAGAATTGGAGATTCATAAAGT
1 TTTCAGATTCACAAGAATTGAAGATTTGTAAGGC
** *
15061678 TTTCAGATTTGCAAGAATTGAATATTTGTAAGGC
1 TTTCAGATTCACAAGAATTGAAGATTTGTAAGGC
*
15061712 TTTTAGATTCA
1 TTTCAGATTCA
15061723 TGAGAATTAG
Statistics
Matches: 62, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
34 62 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (34 bp):
TTTCAGATTCACAAGAATTGAAGATTTGTAAGGC
Found at i:15061652 original size:68 final size:68
Alignment explanation
Indices: 15061574--15061765 Score: 258
Period size: 68 Copynumber: 2.8 Consensus size: 68
15061564 GATTCACAAA
*
15061574 GCTTTTAGATTTACGAGAATTAGAGGTTCACAAAGTTTTCAGATTCACAAGAATTGAAGATTTGC
1 GCTTTTAGATTTACGAGAATTAGAGATTCACAAAGTTTTCAGATTCACAAGAATTGAAGATTTGC
15061639 AAG
66 AAG
* * * * * ** * *
15061642 GCTTTCAGATTTGCAAGAATTGGAGATTCATAAAGTTTTCAGATTTGCAAGAATTGAATATTTGT
1 GCTTTTAGATTTACGAGAATTAGAGATTCACAAAGTTTTCAGATTCACAAGAATTGAAGATTTGC
15061707 AAG
66 AAG
* * * *
15061710 GCTTTTAGATTCATGAGAATTAGAGATTCACAAAGTTTTCAAATTCATAAGAATTG
1 GCTTTTAGATTTACGAGAATTAGAGATTCACAAAGTTTTCAGATTCACAAGAATTG
15061766 GTAGTCACAA
Statistics
Matches: 103, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
68 103 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (68 bp):
GCTTTTAGATTTACGAGAATTAGAGATTCACAAAGTTTTCAGATTCACAAGAATTGAAGATTTGC
AAG
Found at i:15061821 original size:34 final size:34
Alignment explanation
Indices: 15061770--15061844 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
15061760 GAATTGGTAG
*
15061770 TCACAAGAATTGAAGATTCGTAAAGTTTTCAAAT
1 TCACAAGAATTGAAGATTCATAAAGTTTTCAAAT
* * *
15061804 TCGCAAGAATTGGAGATTCATAAAGTTTTCAGAT
1 TCACAAGAATTGAAGATTCATAAAGTTTTCAAAT
15061838 TCACAAG
1 TCACAAG
15061845 GCTTTCAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (34 bp):
TCACAAGAATTGAAGATTCATAAAGTTTTCAAAT
Found at i:15063116 original size:9 final size:8
Alignment explanation
Indices: 15063089--15063153 Score: 98
Period size: 8 Copynumber: 8.2 Consensus size: 8
15063079 TTTTTCTCCA
15063089 TTTTCA-T
1 TTTTCATT
15063096 TTTTCATT
1 TTTTCATT
*
15063104 TTTCCATT
1 TTTTCATT
15063112 TTTTCATTT
1 TTTTCA-TT
15063121 TTTTCATT
1 TTTTCATT
15063129 TTTTCATT
1 TTTTCATT
15063137 TTTTCATT
1 TTTTCATT
15063145 TTTTC-TT
1 TTTTCATT
15063152 TT
1 TT
15063154 ATTTTCTTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
7 10 0.19
8 36 0.67
9 8 0.15
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTCATT
Found at i:15063123 original size:25 final size:25
Alignment explanation
Indices: 15063095--15063148 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
15063085 TCCATTTTCA
15063095 TTTTTCATTTTTCCATTTTTTCATT
1 TTTTTCATTTTTCCATTTTTTCATT
*
15063120 TTTTTCATTTTTTCATTTTTTCATT
1 TTTTTCATTTTTCCATTTTTTCATT
15063145 TTTT
1 TTTT
15063149 CTTTTATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (25 bp):
TTTTTCATTTTTCCATTTTTTCATT
Found at i:15067248 original size:66 final size:63
Alignment explanation
Indices: 15067111--15067646 Score: 290
Period size: 66 Copynumber: 8.7 Consensus size: 63
15067101 CATTTTAGGG
*
15067111 TTTTTATTTTCAAGAAAAATTGATATTTTCAACTTTTCCT--AAAAAATTCCTTTTTGAAATCTT
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTCCTTTTTGAAA----
15067174 TA
62 TA
15067176 TTTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATATATCCTTTGTTTGA
1 -TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAA-A-AT-TCC-TT-TTTGA
15067241 AA-A
60 AATA
* * * * * **
15067244 -TTTTATTTTCAA-AGAATATTGATACTTCCAACTTTTTCTCAAAAGAATT-TTTTTTTTAAT-
1 TTTTTATTTTCAAGA-AAAATTGATACTTTCAACTTTTCCTCAAAAAAATTCCTTTTTGAAATA
* * ** * * *
15067304 TTTAT-TTTTCAAGGAAAATTGGCA-TTCTCAACTTTTCCT--TAAAAA--CATTTTTGACA-A
1 TTTTTATTTTCAAGAAAAATTGATACTT-TCAACTTTTCCTCAAAAAAATTCCTTTTTGAAATA
* * * * * * * *
15067361 -TTTAATTTTCAAGAAAAATTAACATTTTCAACTTTTTCTTAAAAATA-T--TTTTT-AAAAA
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTCCTTTTTGAAATA
* * * * * **** *
15067419 ATTTTACTTCCAAGGAAAATTGATACTTTCAA-TTTTTCTTTGCAAAA-T-GTTTTT----T-
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTCCTTTTTGAAATA
* * *
15067474 TTTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAAAAATAT-TTTTTTG-AA-A
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCC-TCAAAAAAAT-TCCTTTTTGAAATA
* * * * *
15067536 TTTTTATTTTCAAGAAAAATTGATACTTTTAACTTTTCCT--TAAAAATTGCTTTTTTCTAAAAA
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAAATT-C-CTTTT-TGAAAT
15067599 A
63 A
* * * *
15067600 ATATTATTTTCAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAAA
1 TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAA
15067647 TGGTTTTTTT
Statistics
Matches: 373, Mismatches: 59, Indels: 76
0.73 0.12 0.15
Matches are distributed among these distances:
55 29 0.08
56 7 0.02
57 40 0.11
58 25 0.07
59 47 0.13
60 29 0.08
61 11 0.03
62 38 0.10
63 3 0.01
64 40 0.11
65 2 0.01
66 82 0.22
68 5 0.01
69 1 0.00
70 2 0.01
71 3 0.01
72 2 0.01
73 7 0.02
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (63 bp):
TTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTCCTTTTTGAAATA
Found at i:15067379 original size:57 final size:57
Alignment explanation
Indices: 15067304--15067412 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 57
15067294 TTTTTTTAAT
* * **
15067304 TTTATTTTTCAAGGAAAATTGGCATTCTCAACTTTTCCTTAAAAACATTTTTGACAA
1 TTTAATTTTCAAGAAAAATTAACATTCTCAACTTTTCCTTAAAAACATTTTTGACAA
* * *
15067361 TTTAATTTTCAAGAAAAATTAACATTTTCAACTTTTTCTTAAAAATATTTTT
1 TTTAATTTTCAAGAAAAATTAACATTCTCAACTTTTCCTTAAAAACATTTTT
15067413 TAAAAAATTT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 45 1.00
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.46
Consensus pattern (57 bp):
TTTAATTTTCAAGAAAAATTAACATTCTCAACTTTTCCTTAAAAACATTTTTGACAA
Found at i:15067533 original size:176 final size:176
Alignment explanation
Indices: 15067066--15067665 Score: 477
Period size: 176 Copynumber: 3.3 Consensus size: 176
15067056 TGCTTTTATA
* * ** *** *
15067066 CAAGGAAAATTGATACTTTCAACTTTTTCTTAAAGCAT--TTTAGGGTTTTTATTTTCAAGAAAA
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAATGGTTT-TTTTTTTTATTTTCAAGGAAA
* * * *
15067129 ATTGATATTTTCAACTTTTCCTAAAAAATTCCTTTTTGAAATCTTTATTTTTTATTTTCAAGAAA
65 ATTGACATTCTCAACTTTTCCTTAAAAA--CATTTTTGAAAT-TTTA------ATTTTCAAGAAA
* * * *** * * *
15067194 AATTGATACTTTCAACTTTTCCTCAAAAATAT-ATATCCTTTGTTTGAAAATTTTATTTT
121 AATTGATACTTTTAACTTTTCCTTAAAAAT-TCAT-T--TTTCTAAAAAAATATTACTTC
* * * * **
15067253 CAAAGAATATTGATACTTCCAACTTTTTCTCAAAAGAATTTTTTTTTTAATTTTATTTTTCAAGG
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAA-AATGGTTTTTTT--TTTTA-TTTTCAAGG
*
15067318 AAAATTGGCATTCTCAACTTTTCCTTAAAAACATTTTTGACAA-TTTAATTTTCAAGAAAAATT-
62 AAAATTGACATTCTCAACTTTTCCTTAAAAACATTTTTGA-AATTTTAATTTTCAAGAAAAATTG
* *
15067381 A-ACATTTTCAACTTTTTCTTAAAAA-T-ATTTTT-T-AAAAAATTTTACTTC
126 ATAC-TTTT-AACTTTTCCTTAAAAATTCATTTTTCTAAAAAAATATTACTTC
* * ***
15067429 CAAGGAAAATTGATACTTTCAATTTTTCTTTGCAAAAT-GTTTTTTTTTTTATTTTCAAGGAAAA
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAATGGTTTTTTTTTTTATTTTCAAGGAAAA
* * *
15067493 TTGATACTT-TCAACTTTTCCTTAAAAAAAATATTTTTTTGAAATTTTTATTTTCAAGAAAAATT
66 TTGACA-TTCTCAACTTTTCCTT---AAAAACA--TTTTTGAAATTTTAATTTTCAAGAAAAATT
* * *
15067557 GATACTTTTAACTTTTCCTTAAAAATTGCTTTTTTCTAAAAAAATATTATTTT
125 GATACTTTTAACTTTTCCTTAAAAATT-CATTTTTCTAAAAAAATATTACTTC
* *
15067610 CAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAAATGGTTTTTTTTTTAATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAATGGTTTTTTTTTTTATTTT
15067666 ATTTAAAAAA
Statistics
Matches: 341, Mismatches: 48, Indels: 53
0.77 0.11 0.12
Matches are distributed among these distances:
171 30 0.09
172 7 0.02
174 13 0.04
175 5 0.01
176 78 0.23
177 7 0.02
178 5 0.01
179 5 0.01
180 2 0.01
181 49 0.14
182 20 0.06
183 30 0.09
187 30 0.09
188 2 0.01
189 5 0.01
190 11 0.03
191 7 0.02
192 35 0.10
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.47
Consensus pattern (176 bp):
CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAATGGTTTTTTTTTTTATTTTCAAGGAAAA
TTGACATTCTCAACTTTTCCTTAAAAACATTTTTGAAATTTTAATTTTCAAGAAAAATTGATACT
TTTAACTTTTCCTTAAAAATTCATTTTTCTAAAAAAATATTACTTC
Found at i:15067540 original size:64 final size:64
Alignment explanation
Indices: 15067474--15067646 Score: 228
Period size: 62 Copynumber: 2.7 Consensus size: 64
15067464 AATGTTTTTT
* *
15067474 TTTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAAAAAT-ATTTTTT-TGAAA
1 TTTTTATTTTCAAGGAAAATTGATACTTTTAACTTTTCCTTAAAAAAAATGATTTTTTCTAAAA
* * *
15067536 TTTTTATTTTCAAGAAAAATTGATACTTTTAACTTTTCCTT--AAAAATTGCTTTTTTCTAAAAA
1 TTTTTATTTTCAAGGAAAATTGATACTTTTAACTTTTCCTTAAAAAAAATGATTTTTTCT--AAA
15067599 A
64 A
* * *
15067600 ATATTATTTTCAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAAA
1 TTTTTATTTTCAAGGAAAATTGATACTTTTAACTTTTCCTTAAAAAA
15067647 TGGTTTTTTT
Statistics
Matches: 96, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
60 6 0.06
61 6 0.06
62 40 0.42
64 40 0.42
66 4 0.04
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.46
Consensus pattern (64 bp):
TTTTTATTTTCAAGGAAAATTGATACTTTTAACTTTTCCTTAAAAAAAATGATTTTTTCTAAAA
Found at i:15067590 original size:117 final size:115
Alignment explanation
Indices: 15067244--15067646 Score: 309
Period size: 117 Copynumber: 3.4 Consensus size: 115
15067234 TGTTTGAAAA
* * * * * * **
15067244 TTTTATTTTCAAAGAATATTGATACTTCCAACTTTTTC-TCAAAAGAAT-TTTTTTTTTAATTTT
1 TTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAAAAATATTTTTTTAAAATTTT
** *
15067307 ATTTTTCAAGGAAAATTGGCA-TTCTCAACTTTTCCTTAAAAA--CATTTTTGACAA
66 A-TTTTCAAGGAAAATTGATACTT-TCAACTTTTCCTTAAAAATGC-TTTTT----T
* * * * * * *
15067361 TTTAATTTTCAAGAAAAATTAACATTTTCAACTTTTTCTT---AAAAATATTTTTTAAAAAATTT
1 TTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAAAAATATTTTTT-TAAAATTT
* * * * * *
15067423 TACTTCCAAGGAAAATTGATACTTTCAATTTTTCTTTGCAAAATGTTTTTTT
65 TATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTT-AAAAATGCTTTTTT
*
15067475 TTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAAAAATATTTTTTTGAAATTTT
1 TTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAAAAATATTTTTTT-AAAATTT
* *
15067540 TATTTTCAAGAAAAATTGATACTTTTAACTTTTCCTTAAAAATTGCTTTTTT
65 TATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAA-TGCTTTTTT
* *
15067592 CTAAAAAAATATTATTTTCAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAAA
1 -T-------T-TTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAAA
15067647 TGGTTTTTTT
Statistics
Matches: 226, Mismatches: 39, Indels: 33
0.76 0.13 0.11
Matches are distributed among these distances:
114 34 0.15
115 5 0.02
116 36 0.16
117 101 0.45
118 7 0.03
125 1 0.00
126 42 0.19
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.47
Consensus pattern (115 bp):
TTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAAAAATATTTTTTTAAAATTTT
ATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATGCTTTTTT
Done.