Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168289.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24337
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
Found at i:115 original size:30 final size:27
Alignment explanation
Indices: 75--220 Score: 95
Period size: 30 Copynumber: 5.1 Consensus size: 27
65 TATGACTAAG
75 TAATAATTATTTAATTATATATAATTAAA
1 TAAT-ATTATTTAATTATATA-AATTAAA
* *
104 TAAACTATTATTAAATT-TATATATT-AA
1 T-AA-TATTATTTAATTATATAAATTAAA
*
131 TAATAGTTATTTAA-TATTTAATATTATAA
1 TAATA-TTATTTAATTATATAA-ATTA-AA
*
160 TTAATATTATATTAATT-TATAAATATTAA
1 -TAATATTAT-TTAATTATATAAAT-TAAA
189 TAACTAAATTAATTTAATTAT-TAAATTAAA
1 TAA-T--ATT-ATTTAATTATATAAATTAAA
219 TA
1 TA
221 TTTTATATAA
Statistics
Matches: 93, Mismatches: 8, Indels: 31
0.70 0.06 0.23
Matches are distributed among these distances:
25 3 0.03
26 12 0.13
27 6 0.06
28 6 0.06
29 16 0.17
30 31 0.33
31 16 0.17
32 3 0.03
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (27 bp):
TAATATTATTTAATTATATAAATTAAA
Found at i:141 original size:29 final size:27
Alignment explanation
Indices: 112--191 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 27
102 AATAAACTAT
112 TATTAAATTTATATATTAATAATAGTTA
1 TATTAAATTTATATATTAATAATA-TTA
140 T-TTAATATTTA-ATATTATAATTAATATTA
1 TATTAA-ATTTATATA-T-TAA-TAATATTA
169 TATT-AATTTATAAATATTAATAA
1 TATTAAATTTAT--ATATTAATAA
192 CTAAATTAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 16
0.73 0.00 0.27
Matches are distributed among these distances:
27 7 0.16
28 15 0.34
29 11 0.25
30 8 0.18
31 3 0.07
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (27 bp):
TATTAAATTTATATATTAATAATATTA
Found at i:165 original size:12 final size:12
Alignment explanation
Indices: 148--181 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
138 TATTTAATAT
148 TTAATATTATAA
1 TTAATATTATAA
160 TTAATATTAT-A
1 TTAATATTATAA
171 TTAAT-TTATAA
1 TTAATATTATAA
182 ATATTAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.19
11 7 0.33
12 10 0.48
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TTAATATTATAA
Found at i:214 original size:31 final size:29
Alignment explanation
Indices: 75--214 Score: 82
Period size: 31 Copynumber: 4.8 Consensus size: 29
65 TATGACTAAG
*
75 TAAT-AATTATTTAATTA-TATATAATT-A
1 TAATAAATTATTTAATTATTAAAT-ATTAA
* * *
102 -AATAAACTATTATTAAAT-TTATATATTAA
1 TAATAAATTA-T-TTAATTATTAAATATTAA
* *
131 TAAT-AGTTATTTAA-TATTTAATATT-A
1 TAATAAATTATTTAATTATTAAATATTAA
157 TAATTAATATTATATTAATT-TATAAATATTAA
1 TAA-TAA-ATTAT-TTAATTAT-TAAATATTAA
189 TAACTAAATTAATTTAATTATTAAAT
1 TAA-TAAATT-ATTTAATTATTAAAT
215 TAAATATTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 28
0.70 0.07 0.22
Matches are distributed among these distances:
26 8 0.09
27 16 0.18
28 6 0.07
29 18 0.20
30 8 0.09
31 22 0.25
32 10 0.11
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (29 bp):
TAATAAATTATTTAATTATTAAATATTAA
Found at i:696 original size:11 final size:11
Alignment explanation
Indices: 673--704 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
663 TATTTATAAG
673 TTAATTAAATAT
1 TTAATT-AATAT
685 TTAATTAATAT
1 TTAATTAATAT
696 TTAATTAAT
1 TTAATTAAT
705 TTAATAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.70
12 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
TTAATTAATAT
Found at i:854 original size:19 final size:18
Alignment explanation
Indices: 830--867 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
820 TTAATTTTAT
*
830 ATTAATTTAACTAATATAA
1 ATTAATTTAAAT-ATATAA
849 ATTAATTTAAATATATAA
1 ATTAATTTAAATATATAA
867 A
1 A
868 CTATTAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTAATTTAAATATATAA
Found at i:883 original size:23 final size:23
Alignment explanation
Indices: 855--903 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
845 ATAAATTAAT
855 TTAAATATATAAACTATTAATGA
1 TTAAATATATAAACTATTAATGA
* **
878 TTAAATATTTAATTTATTAATGA
1 TTAAATATATAAACTATTAATGA
901 TTA
1 TTA
904 TATTAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (23 bp):
TTAAATATATAAACTATTAATGA
Found at i:911 original size:20 final size:21
Alignment explanation
Indices: 869--922 Score: 76
Period size: 20 Copynumber: 2.6 Consensus size: 21
859 ATATATAAAC
869 TATTAATGATTAAATATTTAATT
1 TATTAATGATT--ATATTTAATT
892 TATTAATGATTATA-TTAATT
1 TATTAATGATTATATTTAATT
912 TATTAAT-ATTA
1 TATTAATGATTA
923 ATAAATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.13
20 13 0.42
21 3 0.10
23 11 0.35
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (21 bp):
TATTAATGATTATATTTAATT
Found at i:1546 original size:24 final size:24
Alignment explanation
Indices: 1507--1574 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 24
1497 ATAATTGATT
*
1507 AAAC-AATTAT-ACTAATAATTTA
1 AAACTAATTATAAATAATAATTTA
* * *
1529 TAACTATTTATAAATAATTATTTA
1 AAACTAATTATAAATAATAATTTA
* *
1553 AAAGTAATTATAATTAATAATT
1 AAACTAATTATAAATAATAATT
1575 ATATTAATTA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
22 3 0.09
23 5 0.14
24 27 0.77
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (24 bp):
AAACTAATTATAAATAATAATTTA
Found at i:2312 original size:20 final size:21
Alignment explanation
Indices: 2277--2353 Score: 95
Period size: 20 Copynumber: 3.5 Consensus size: 21
2267 ATTTAAAACA
2277 ATTATATTAGTTATATTATAAAT
1 ATTA-ATTA-TTATATTATAAAT
2300 ATTAA-TATTATATTATAAAT
1 ATTAATTATTATATTATAAAT
2320 ATTAATTATTAT-TTATAATTAT
1 ATTAATTATTATATTATAA--AT
2342 ATTAGATTATTA
1 ATTA-ATTATTA
2354 GAATAATATT
Statistics
Matches: 50, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
20 24 0.48
21 8 0.16
22 7 0.14
23 11 0.22
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (21 bp):
ATTAATTATTATATTATAAAT
Found at i:2353 original size:13 final size:12
Alignment explanation
Indices: 2277--2431 Score: 55
Period size: 12 Copynumber: 13.0 Consensus size: 12
2267 ATTTAAAACA
*
2277 ATTATATTAGTT
1 ATTATATTAATT
*
2289 A-TAT-TATAAAT
1 ATTATAT-TAATT
2300 ATTAATATTATATT
1 ATT-ATATTA-ATT
*
2314 ATAAATATTAATT
1 AT-TATATTAATT
*
2327 ATTAT-TT-ATA
1 ATTATATTAATT
2337 ATTATATTAGATT
1 ATTATATTA-ATT
* *
2350 ATTAGAATAA-T
1 ATTATATTAATT
*
2361 ATTTATAGT-ATT
1 A-TTATATTAATT
2373 AATTATATT-ATAT
1 -ATTATATTAAT-T
*
2386 ATT-TATTATTGT
1 ATTATATTAAT-T
2398 ATTAT-TTGAATT
1 ATTATATT-AATT
2410 ATTA-ATATAATT
1 ATTATAT-TAATT
2422 A-TA-ATTAATT
1 ATTATATTAATT
2432 TATATTGTAA
Statistics
Matches: 110, Mismatches: 15, Indels: 38
0.67 0.09 0.23
Matches are distributed among these distances:
10 13 0.12
11 22 0.20
12 40 0.36
13 24 0.22
14 11 0.10
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (12 bp):
ATTATATTAATT
Found at i:2393 original size:16 final size:17
Alignment explanation
Indices: 2281--2394 Score: 60
Period size: 18 Copynumber: 6.6 Consensus size: 17
2271 AAAACAATTA
* *
2281 TATTAGTTATATTATAAA
1 TATTAATTATATTAT-AG
*
2299 TATTAATATTATATTATAAA
1 TATT-A-ATTATATTAT-AG
2319 TATTAATTATTATT-TA-
1 TATTAATTA-TATTATAG
*
2335 TAATTATATTAGATTATTAG
1 T-ATTA-ATTATATTA-TAG
*
2355 -AATAA-TAT-TTATAG
1 TATTAATTATATTATAG
2369 TATTAATTATATTATA-
1 TATTAATTATATTATAG
*
2385 TATTTATTAT
1 TATTAATTAT
2395 TGTATTATTT
Statistics
Matches: 79, Mismatches: 6, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
14 3 0.04
15 7 0.09
16 15 0.19
17 14 0.18
18 16 0.20
19 8 0.10
20 16 0.20
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (17 bp):
TATTAATTATATTATAG
Found at i:3147 original size:16 final size:15
Alignment explanation
Indices: 3118--3152 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
3108 ACTATTCACA
3118 TATACATTTAATTAT
1 TATACATTTAATTAT
*
3133 TATACTATTTGATTAT
1 TATAC-ATTTAATTAT
3149 TATA
1 TATA
3153 AAATTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (15 bp):
TATACATTTAATTAT
Found at i:3356 original size:17 final size:17
Alignment explanation
Indices: 3299--3358 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
3289 AATAATGAAT
* *
3299 TTATTATAACTTATATTA
1 TTATTATAA-TTAAACTA
*
3317 -TATTAT-ATTTAACTA
1 TTATTATAATTAAACTA
* *
3332 TAATTATAATTAAAGTA
1 TTATTATAATTAAACTA
3349 TTATTATAAT
1 TTATTATAAT
3359 ACTAATTATT
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
15 5 0.15
16 6 0.18
17 22 0.67
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (17 bp):
TTATTATAATTAAACTA
Found at i:3368 original size:15 final size:14
Alignment explanation
Indices: 3347--3388 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
3337 ATAATTAAAG
3347 TATTATTATAAT-A
1 TATTATTATAATGA
3360 CTAATTATTAATAATGA
1 -T-ATTATT-ATAATGA
3377 TATTATTATAAT
1 TATTATTATAAT
3389 TTAATAATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.24
15 12 0.48
16 6 0.24
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (14 bp):
TATTATTATAATGA
Found at i:4164 original size:21 final size:21
Alignment explanation
Indices: 4126--4165 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
4116 TATAGTAATA
*
4126 AATTATTAAATAATTTATTGG
1 AATTATTAAATAACTTATTGG
4147 AATTATT-AATATACTTATT
1 AATTATTAAATA-ACTTATT
4166 TTTTAAGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (21 bp):
AATTATTAAATAACTTATTGG
Found at i:4315 original size:16 final size:16
Alignment explanation
Indices: 4294--4326 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4284 TTTTGTACTA
4294 TTGTTT-AATTATATAT
1 TTGTTTAAATTAT-TAT
4310 TTGTTTAAATTATTAT
1 TTGTTTAAATTATTAT
4326 T
1 T
4327 ATTTAAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (16 bp):
TTGTTTAAATTATTAT
Found at i:4783 original size:182 final size:179
Alignment explanation
Indices: 4513--4854 Score: 405
Period size: 182 Copynumber: 1.9 Consensus size: 179
4503 AATAAGTAGG
* ** * * *
4513 AGATTTAAAAAATAAATTTGTTTATCGAATTAGCTCAAATAGTTATGACTATTTGAACAATTATA
1 AGATTTAAAAAATAAATTTGTTTATCAAACCAACTCAAATAGTTAAGACTATATGAACAATTATA
** * * * *
4578 TATTTTTAGTCGTTATAACCTTTTATTTTGTCATAAAACAATTATTTATCTTCATACAAGCTTAT
66 TATTTCAAATCATTATAACCTTTT-GTTTGTCATAAAACAAATATTTATCTTCATACAAGCTTAT
*
4643 TTGAAATAAAATAATACTAATATAGTAATATTATGAAATTTAATAACCGAT
130 TCG-AATAAAATAATACTAATATAGTAATATTATGAAATTTAATAACCGAT
* * *
4694 AGATTTAAAAAAATAAATTTGTTTATCAAACCAATTCAAATAGTTAAGGCTATATGAATAATTAT
1 AGATTT-AAAAAATAAATTTGTTTATCAAACCAACTCAAATAGTTAAGACTATATGAACAATTAT
* * * * * * * * *
4759 CTATTTCAAATCATTATGACCTTTTGTTTGTCGTAAAACAAATGTTTTTGTTCATATAAGTTTGT
65 ATATTTCAAATCATTATAACCTTTTGTTTGTCATAAAACAAATATTTATCTTCATACAAGCTTAT
* * *
4824 TCGAATAAAATAATATTAATTTATTAATATT
130 TCGAATAAAATAATACTAATATAGTAATATT
4855 TCAAAAATTA
Statistics
Matches: 132, Mismatches: 28, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
180 25 0.19
181 39 0.30
182 68 0.52
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (179 bp):
AGATTTAAAAAATAAATTTGTTTATCAAACCAACTCAAATAGTTAAGACTATATGAACAATTATA
TATTTCAAATCATTATAACCTTTTGTTTGTCATAAAACAAATATTTATCTTCATACAAGCTTATT
CGAATAAAATAATACTAATATAGTAATATTATGAAATTTAATAACCGAT
Found at i:5685 original size:180 final size:176
Alignment explanation
Indices: 5339--5866 Score: 492
Period size: 180 Copynumber: 2.9 Consensus size: 176
5329 ATCTACTCAC
* ** * * *
5339 CAAACCATTTCAAATAGTTTTGACTATTTCAATAATTATTTATTTCAAATCGTTAT-AGCCTTTT
1 CAAACCAGTTCAAATAGTTAAGACT-TATGAATAATTATCTATTTCAAATCGTTATGA-CCTTTT
* * * * * **
5403 ATTTTATCATCAAGCAATTGGTTCTGTTCGTACTATTTTATTTAGAATAAAATAATACTAATTTA
64 -TTTTATCATAAAACAATT-GTTTTGTTCATACAAGCTTATTTAGAA-AAAATAATACTAATTTA
* * * *
5468 ATAATA-TTTCAAAACTTAATAACCAAGAAAATTAAAAAATAAATCTAATTGT-
126 ATAATATTTTGAAAA-TTAATAAGCAAGAGATTTAAAAAATAAAT-TAATT-TA
* *
5520 CAAACCAGTTCAAATAGTTAAGACTCTATGAATGATTATCTATTTCAAATTGTTATGACCTTTTC
1 CAAACCAGTTCAAATAGTTAAGACT-TATGAATAATTATCTATTTCAAATCGTTATGACCTTTT-
* *
5585 TTTTAACATAAAACAATTGTTTTGTTCATACAAGCTTATTTAGATAAAAAGAATACTAATTTAAT
64 TTTTATCATAAAACAATTGTTTTGTTCATACAAGCTTATTTAGA-AAAAATAATACTAATTTAAT
* **
5650 AATATTTTGAACATTAATAAGCAAGAGATTTAAAAAATAAATTTGTTTA
128 AATATTTTGAAAATTAATAAGCAAGAGATTTAAAAAATAAATTAATTTA
* * * * * * *
5699 CTAAATCAGCTCAAATAGTTAA-AATTATTAGAATAATTATCTATTTCATATCATTTTGATCTTT
1 C-AAACCAGTTCAAATAGTTAAGACTTA-T-GAATAATTATCTATTTCAAATCGTTATGACCTTT
* * * * *
5763 TGTTTAGTCATAAAATAATTGTTTCAGTTCATACAAGCTTAGTCA-AAATAAATTAATACTAATT
63 TTTTTA-TCATAAAACAATTGTTT-TGTTCATACAAGCTTATTTAGAAA-AAA-TAATACTAATT
* * *
5827 T-ATAAACATTTTGAAAATTAATATGAAAGAGATTTAAAAA
124 TAAT-AATATTTTGAAAATTAATAAGCAAGAGATTTAAAAA
5867 TATTTATTTT
Statistics
Matches: 289, Mismatches: 46, Indels: 24
0.81 0.13 0.07
Matches are distributed among these distances:
178 3 0.01
179 13 0.04
180 137 0.47
181 135 0.47
182 1 0.00
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (176 bp):
CAAACCAGTTCAAATAGTTAAGACTTATGAATAATTATCTATTTCAAATCGTTATGACCTTTTTT
TTATCATAAAACAATTGTTTTGTTCATACAAGCTTATTTAGAAAAAATAATACTAATTTAATAAT
ATTTTGAAAATTAATAAGCAAGAGATTTAAAAAATAAATTAATTTA
Found at i:7271 original size:29 final size:29
Alignment explanation
Indices: 7203--7288 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 29
7193 ATCAATTATT
*
7203 ATTATAACTTATAA-TAAA--ATAACTTA
1 ATTATAACTTATAATTAAATTATAATTTA
*
7229 ATTACT-A-TTAATAATTAAATTAAAATTTA
1 ATTA-TAACTT-ATAATTAAATTATAATTTA
7258 ATTATAACTTATAATT-AATTATAATATTA
1 ATTATAACTTATAATTAAATTATAAT-TTA
7287 AT
1 AT
7289 AGTTAATAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
25 2 0.04
26 9 0.18
27 5 0.10
28 9 0.18
29 22 0.45
30 2 0.04
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (29 bp):
ATTATAACTTATAATTAAATTATAATTTA
Found at i:7554 original size:18 final size:19
Alignment explanation
Indices: 7531--7566 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7521 AATTATTATA
7531 ATAAATAGTAA-TAATATT
1 ATAAATAGTAACTAATATT
*
7549 ATAAATATTAACTAATAT
1 ATAAATAGTAACTAATAT
7567 ATGACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
ATAAATAGTAACTAATATT
Found at i:7611 original size:18 final size:18
Alignment explanation
Indices: 7463--7613 Score: 53
Period size: 18 Copynumber: 8.1 Consensus size: 18
7453 CCTAAAATAT
*
7463 TATTAATAATATTTAATTA
1 TATTAAT-ATATTAAATTA
* *
7482 TAATAATTTATTAAATTA
1 TATTAATATATTAAATTA
* *
7500 TTACATGATACTATATAAATTA
1 -TA-TTAATA-TAT-TAAATTA
* *
7522 -ATTATTATAATAAA-TA
1 TATTAATATATTAAATTA
* *
7538 GTAATAATATTATAAATATTA
1 -TATTAATA-TATTAA-ATTA
* * *
7559 -ACTAATATATGACTATTA
1 TATTAATATATTA-AATTA
7577 GT-TTAA-A-ATTGAAATTA
1 -TATTAATATATT-AAATTA
7594 TATTAATATATTAAATTA
1 TATTAATATATTAAATTA
7612 TA
1 TA
7614 ATAGCCAAAT
Statistics
Matches: 97, Mismatches: 19, Indels: 33
0.65 0.13 0.22
Matches are distributed among these distances:
16 3 0.03
17 14 0.14
18 35 0.36
19 27 0.28
20 6 0.06
21 5 0.05
22 7 0.07
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (18 bp):
TATTAATATATTAAATTA
Found at i:9108 original size:22 final size:20
Alignment explanation
Indices: 9074--9115 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
9064 TTATTTAATT
9074 TTAATAATCAATTTAAAATATA
1 TTAATAATCAA-TT-AAATATA
9096 TTAATAGAT-AATTAAATATA
1 TTAATA-ATCAATTAAATATA
9116 ATACAAGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 7 0.37
21 2 0.11
22 8 0.42
23 2 0.11
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TTAATAATCAATTAAATATA
Found at i:9614 original size:21 final size:22
Alignment explanation
Indices: 9585--9632 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
9575 ATTATTTTAA
9585 AATAATTTAAAGAATTAAAT-T
1 AATAATTTAAAGAATTAAATAT
* *
9606 AATACTTTAAAGAATTATATAT
1 AATAATTTAAAGAATTAAATAT
9628 AATAA
1 AATAA
9633 AATTAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
AATAATTTAAAGAATTAAATAT
Found at i:10618 original size:181 final size:181
Alignment explanation
Indices: 9963--10653 Score: 555
Period size: 180 Copynumber: 3.8 Consensus size: 181
9953 TTTGTGAACA
* * *
9963 AAAACAAAAAT-TCACAACAATTTTAAATAGATAATTGTTCAAATAGTCATAACTA----AACTT
1 AAAAC-AAAATGTCAAAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA-TT
* * * * * **
10023 GTTTAGTAAACAAATTTAGTTTTTCAAATATCCTGCTTATTAATCTTTCAAAGGTTAATAAATTA
64 GTTTAGTAAACAGATTTAGTTTTT-AAATCTCTTGCTTATTAATTTTTGAAATATTAATAAATTA
* * * * * * *
10088 GTATTATTTTCTTTC-GAATAAGCTTGTCTGAACTGAAACAATTATTTTATGAT
128 GTATTATTTTATTTCAGAATAAGTTTATATAAACTGAAACAATTGTTTTATGAC
* * * * * * * **
10141 TAAACAAAAGGTCAAAACAATTTGAAATAGAAAATTATTCTAATAATCTTAACTATTTGAACTAA
1 AAAACAAAATGTCAAAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTGT
** * * * * * *
10206 TCGGCAAACACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTATTAAATTAGTA
66 TTAGTAAACAGATTTAGTTTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAATAAATTAGTA
* * ** * *** *
10271 TTATTTT-TATCTGAATTACCTTATAAGATAAAAAAAAAATAATTGTTTTATGAC
131 TTATTTTATTTCAGAA-TAAGTT-T-ATAT-AAACTGAAACAATTGTTTTATGAC
* * ** * ** * * * *
10325 AAAGC-AAA-GATCATAATGATTTGAGATTTATATTTGTTCAAATAGTCATAATTATTAGAATTG
1 AAAACAAAATG-TCAAAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTG
* * * * * *
10388 CTTAGAAAAACTGCTTTAGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAG
65 TTTAG-TAAACAGATTTAGTTTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAATAAATTAG
* *
10453 TATTATTTTATTTCAG-ATAAGTTTTTATTAACTGAAACAATTGTTTTATGAC
129 TATTATTTTATTTCAGAATAAGTTTATATAAACTGAAACAATTGTTTTATGAC
* * * *
10505 AAAACAAAATGTCAAAATAATTTTAAATAGATAATTATTTAAATAGTCATATCTATTTGAAATTG
1 AAAACAAAATGTCAAAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTG-AATTG
* *
10570 TTTAGTAAACAGATTTATTTTTTAAAATCTCTTGC-T-TTAATTTTTTG-AATGTTAATAAATTA
65 TTTAGTAAACAGATTTAGTTTTT-AAATCTCTTGCTTATTAA-TTTTTGAAATATTAATAAATTA
*
10632 GTATTATTTTATTCCA-AATAAG
128 GTATTATTTTATTTCAGAATAAG
10654 CTTGTATGAC
Statistics
Matches: 391, Mismatches: 103, Indels: 36
0.74 0.19 0.07
Matches are distributed among these distances:
177 4 0.01
178 41 0.10
179 3 0.01
180 104 0.27
181 83 0.21
182 26 0.07
183 47 0.12
184 79 0.20
185 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (181 bp):
AAAACAAAATGTCAAAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTGT
TTAGTAAACAGATTTAGTTTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAATAAATTAGTA
TTATTTTATTTCAGAATAAGTTTATATAAACTGAAACAATTGTTTTATGAC
Found at i:10700 original size:159 final size:156
Alignment explanation
Indices: 10499--10818 Score: 387
Period size: 159 Copynumber: 2.0 Consensus size: 156
10489 ACAATTGTTT
* * *
10499 TATGACAAAACAAAATGTCAAAATAATTTTAAATAGATAATTATTTAAATAGTCATATCTATTTG
1 TATGACAAAACAAAAGGTCAAAATAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTG
** * *
10564 AAATTGTTTAG-TAAACAGATTTATTTTTTAAAATCTCTTGCTTTAATTTTTTG-AATGTTAATA
66 AAAGAGTTTAGCT-AACAGATTTATTTTTT-AAATCTCTT--ATTAA-TTTTTGAAATATTAATA
*
10627 AATTAGTATTATTTT-ATTCCAAATAAGCTTG
126 AATTAGTATCATTTTAATT-CAAATAAGCTTG
* * ** *
10658 TATGACTAAACAAAAGGAT-AAAATGATTTGAAATAGATAATTATTTTGATAGTCTTAACTATTT
1 TATGACAAAACAAAAGG-TCAAAATAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTT
* * * *
10722 GAACGAGTTTGGCTAACATATTTATTTTTTAAATCTCTTATTAATTTTTGAAATATTATTAAATT
65 GAAAGAGTTTAGCTAACAGATTTATTTTTTAAATCTCTTATTAATTTTTGAAATATTAATAAATT
*
10787 AGTATCATTTTAATTCGAATAAGCTTG
130 AGTATCATTTTAATTCAAATAAGCTTG
10814 TATGA
1 TATGA
10819 AAGGAAACAA
Statistics
Matches: 139, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
155 6 0.04
156 42 0.30
157 3 0.02
158 9 0.06
159 77 0.55
160 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.43
Consensus pattern (156 bp):
TATGACAAAACAAAAGGTCAAAATAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTG
AAAGAGTTTAGCTAACAGATTTATTTTTTAAATCTCTTATTAATTTTTGAAATATTAATAAATTA
GTATCATTTTAATTCAAATAAGCTTG
Found at i:11226 original size:10 final size:10
Alignment explanation
Indices: 11213--11255 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
11203 TAAATTAGTT
11213 TTATATTTAA
1 TTATATTTAA
*
11223 TTATAATTAA
1 TTATATTTAA
*
11233 TTATA-TAAA
1 TTATATTTAA
*
11242 CTATATTTAA
1 TTATATTTAA
11252 TTAT
1 TTAT
11256 TATCATTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.26
10 20 0.74
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (10 bp):
TTATATTTAA
Found at i:11269 original size:29 final size:29
Alignment explanation
Indices: 11214--11269 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
11204 AAATTAGTTT
* *
11214 TATATTTAATTATAATTAATTATATAAAC
1 TATATTTAATTATAATCAATTAAATAAAC
* *
11243 TATATTTAATTATTATCATTTAAATAA
1 TATATTTAATTATAATCAATTAAATAA
11270 TTAAATGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (29 bp):
TATATTTAATTATAATCAATTAAATAAAC
Found at i:12093 original size:21 final size:21
Alignment explanation
Indices: 12069--12109 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
12059 TTTAAAACAG
* *
12069 ATAACCATTAATATTAAATTT
1 ATAAACATAAATATTAAATTT
*
12090 ATAAATATAAATATTAAATT
1 ATAAACATAAATATTAAATT
12110 ATATTTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (21 bp):
ATAAACATAAATATTAAATTT
Found at i:12234 original size:22 final size:21
Alignment explanation
Indices: 12181--12237 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 21
12171 TTACTATTTA
12181 AAAATTAA-ATATA-AATATT
1 AAAATTAATATATATAATATT
12200 -AAATTATATTATATATAATATT
1 AAAATTA-A-TATATATAATATT
12222 AATAATTAATATATAT
1 AA-AATTAATATATAT
12238 TATTATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
18 6 0.19
19 1 0.03
21 5 0.16
22 13 0.41
23 2 0.06
24 5 0.16
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AAAATTAATATATATAATATT
Found at i:12236 original size:29 final size:28
Alignment explanation
Indices: 12184--12259 Score: 74
Period size: 29 Copynumber: 2.9 Consensus size: 28
12174 CTATTTAAAA
*
12184 ATTA-AATATAAAT-ATTAA-ATTATATT
1 ATTATAATATTAATAATTAATA-TATATT
12210 ATATATAATATTAATAATTAATATATATT
1 AT-TATAATATTAATAATTAATATATATT
*
12239 ATTAT-AT-TTAA-AAATAATATA
1 ATTATAATATTAATAATTAATATA
12260 GTTATCTATT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
25 9 0.20
26 6 0.14
27 4 0.09
28 11 0.25
29 13 0.30
30 1 0.02
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
ATTATAATATTAATAATTAATATATATT
Found at i:12245 original size:25 final size:26
Alignment explanation
Indices: 12189--12259 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 26
12179 TAAAAATTAA
12189 ATATA-AATA-TT-AAATT-ATAT-T
1 ATATATAATATTTAAAATTAATATAT
12210 ATATATAATA-TTAATAATTAATATAT
1 ATATATAATATTTAA-AATTAATATAT
* *
12236 AT-TATTATATTTAAAAATAATATA
1 ATATATAATATTTAAAATTAATATA
12260 GTTATCTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
21 5 0.12
22 6 0.14
23 1 0.02
24 4 0.10
25 19 0.45
26 7 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATATATAATATTTAAAATTAATATAT
Found at i:12524 original size:14 final size:15
Alignment explanation
Indices: 12481--12546 Score: 62
Period size: 14 Copynumber: 4.1 Consensus size: 15
12471 ATATAAATAT
12481 TTAATTATATTTATTAA
1 TTAATTA-ATTT-TTAA
12498 TCTTAATTAATTTTTAA
1 --TTAATTAATTTTTAA
12515 TTAA-TAATTTTTAA
1 TTAATTAATTTTTAA
*
12529 TTAGATTACTTTATTAA
1 TTA-ATTAATTT-TTAA
12546 T
1 T
12547 ATATAATATA
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
14 13 0.30
15 5 0.12
16 5 0.12
17 9 0.21
18 4 0.09
19 7 0.16
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (15 bp):
TTAATTAATTTTTAA
Found at i:12583 original size:17 final size:18
Alignment explanation
Indices: 12539--12594 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
12529 TTAGATTACT
*
12539 TTATTAATATATAATATAA
1 TTATTAATAAATAAT-TAA
12558 -TATTAAT-AATAGATTAA
1 TTATTAATAAATA-ATTAA
12575 TTATT-ATAAATAATTAA
1 TTATTAATAAATAATTAA
12592 TTA
1 TTA
12595 CAATTATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 16 0.48
18 17 0.52
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
TTATTAATAAATAATTAA
Found at i:12705 original size:20 final size:19
Alignment explanation
Indices: 12671--12730 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 19
12661 TAATTATCCT
12671 TTATTATATCT-TATTAATAA
1 TTATTATAT-TATATTAA-AA
*
12691 TTATTATATTATATTAAAC
1 TTATTATATTATATTAAAA
12710 TTAATTAATAATTATATTAAA
1 TT-ATT-AT-ATTATATTAAA
12731 TTAATATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
19 4 0.11
20 18 0.51
21 2 0.06
22 11 0.31
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (19 bp):
TTATTATATTATATTAAAA
Found at i:12718 original size:27 final size:26
Alignment explanation
Indices: 12684--12734 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
12674 TTATATCTTA
* *
12684 TTAATAATTATTATATTATATTAAAC
1 TTAATAATAATTATATTAAATTAAAC
12710 TTAATTAATAATTATATTAAATTAA
1 TTAA-TAATAATTATATTAAATTAA
12735 TATAATCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (26 bp):
TTAATAATAATTATATTAAATTAAAC
Found at i:12786 original size:21 final size:19
Alignment explanation
Indices: 12762--12809 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
12752 ATTAATATTA
12762 AATATTAAAATAAATAAAT
1 AATATTAAAATAAATAAAT
* *
12781 AGAATATTTAAATAATTAAAT
1 --AATATTAAAATAAATAAAT
12802 AATATTAA
1 AATATTAA
12810 TTTAAATAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 7 0.29
21 17 0.71
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
AATATTAAAATAAATAAAT
Found at i:14482 original size:13 final size:14
Alignment explanation
Indices: 14463--14495 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
14453 ATATTTGTTA
*
14463 AATTTAAGTATAAT
1 AATTTAACTATAAT
14477 -ATTTAACTATAAT
1 AATTTAACTATAAT
14490 AATTTA
1 AATTTA
14496 TTAAATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (14 bp):
AATTTAACTATAAT
Found at i:14505 original size:14 final size:15
Alignment explanation
Indices: 14488--14554 Score: 50
Period size: 14 Copynumber: 4.4 Consensus size: 15
14478 TTTAACTATA
14488 ATAATTTATTA-AAT
1 ATAATTTATTATAAT
* *
14502 ATAAATTATTATTAT
1 ATAATTTATTATAAT
*
14517 ATAATTAATTTAGTAAT
1 ATAATTTA-TTA-TAAT
14534 -TAA-TTATTATTAAT
1 ATAATTTATTA-TAAT
14548 ATTAATT
1 A-TAATT
14555 AATAATATGC
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
14 17 0.43
15 10 0.25
16 9 0.22
17 4 0.10
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (15 bp):
ATAATTTATTATAAT
Found at i:14527 original size:33 final size:31
Alignment explanation
Indices: 14479--14557 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 31
14469 AGTATAATAT
*
14479 TTAACTATAA-TAATTTATTAAATATAAATTATTA
1 TTAA-TATAATTAATTTAGT-AAT-T-AATTATTA
14513 TT-ATATAATTAATTTAGTAATTAATTATTA
1 TTAATATAATTAATTTAGTAATTAATTATTA
14543 TTAATATTAATTAAT
1 TTAATA-TAATTAAT
14558 AATATGCATT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
30 10 0.24
31 4 0.10
32 16 0.39
33 9 0.22
34 2 0.05
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (31 bp):
TTAATATAATTAATTTAGTAATTAATTATTA
Found at i:14539 original size:16 final size:16
Alignment explanation
Indices: 14494--14558 Score: 55
Period size: 16 Copynumber: 4.1 Consensus size: 16
14484 TATAATAATT
* *
14494 TATTAAATATAAATTAT
1 TATT-AATATTAATTAA
14511 TATT-ATA-TAATTAA
1 TATTAATATTAATTAA
* *
14525 T-TTAGTAATTAATTAT
1 TATTAAT-ATTAATTAA
14541 TATTAATATTAATTAA
1 TATTAATATTAATTAA
14557 TA
1 TA
14559 ATATGCATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
13 2 0.05
14 7 0.18
15 4 0.11
16 17 0.45
17 8 0.21
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
TATTAATATTAATTAA
Found at i:14560 original size:27 final size:30
Alignment explanation
Indices: 14488--14560 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 30
14478 TTTAACTATA
* * *
14488 ATAATTTATTAAAT-ATAAATTATTATTAT
1 ATAATTAATTTAATAATTAATTATTATTAT
*
14517 ATAATTAATTTAGTAATTAATTATTATTA-
1 ATAATTAATTTAATAATTAATTATTATTAT
14546 AT-ATTAA-TTAATAAT
1 ATAATTAATTTAATAAT
14561 ATGCATTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
27 7 0.18
28 5 0.13
29 13 0.34
30 13 0.34
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (30 bp):
ATAATTAATTTAATAATTAATTATTATTAT
Found at i:15579 original size:20 final size:20
Alignment explanation
Indices: 15541--15673 Score: 87
Period size: 20 Copynumber: 6.5 Consensus size: 20
15531 TTAAAACAAT
15541 TATATTAATTA-TATTATAA
1 TATATTAATTATTATTATAA
15560 -ATATTAATTATTATTTATAA
1 TATATTAATTATTA-TTATAA
**
15580 TTATATTAGATTATTAGAATAA
1 -TATATTA-ATTATTATTATAA
* *
15602 TAT-TTATAGTATTAATTATAT
1 TATATTA-ATTATT-ATTATAA
* * *
15623 TATA-TATTTATTATTGTAT
1 TATATTAATTATTATTATAA
*
15642 TAT-TTGAATTATTAATATAA
1 TATATT-AATTATTATTATAA
15662 TTATAATTAATT
1 -TAT-ATTAATT
15674 TATATTGTAA
Statistics
Matches: 88, Mismatches: 14, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
18 10 0.11
19 12 0.14
20 28 0.32
21 15 0.17
22 14 0.16
23 9 0.10
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (20 bp):
TATATTAATTATTATTATAA
Found at i:15595 original size:13 final size:12
Alignment explanation
Indices: 15560--15673 Score: 50
Period size: 12 Copynumber: 9.8 Consensus size: 12
15550 TATATTATAA
15560 ATATTAATTATT
1 ATATTAATTATT
*
15572 AT-TT-ATAATT
1 ATATTAATTATT
15582 ATATTAGATTATT
1 ATATTA-ATTATT
* *
15595 AGAATAA-TATTT
1 ATATTAATTA-TT
*
15607 ATAGT-ATTAATT
1 ATATTAATT-ATT
15619 ATATT-ATATATT
1 ATATTAAT-TATT
*
15631 -TATTATTGTATT
1 ATATTAAT-TATT
15643 AT-TTGAATTATT
1 ATATT-AATTATT
15655 A-ATATAATTA-T
1 ATAT-TAATTATT
15666 A-ATTAATT
1 ATATTAATT
15674 TATATTGTAA
Statistics
Matches: 80, Mismatches: 10, Indels: 26
0.69 0.09 0.22
Matches are distributed among these distances:
10 12 0.15
11 15 0.19
12 38 0.47
13 15 0.19
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (12 bp):
ATATTAATTATT
Found at i:15635 original size:16 final size:17
Alignment explanation
Indices: 15543--15636 Score: 65
Period size: 18 Copynumber: 5.6 Consensus size: 17
15533 AAAACAATTA
*
15543 TATTAATTATATTATAAA
1 TATTAATTATATTAT-AG
15561 TATTAATTATTATT-TA-
1 TATTAATTA-TATTATAG
*
15577 TAATTATATTAGATTATTAG
1 T-ATTA-ATTATATTA-TAG
*
15597 -AATAA-TAT-TTATAG
1 TATTAATTATATTATAG
15611 TATTAATTATATTATA-
1 TATTAATTATATTATAG
*
15627 TATTTATTAT
1 TATTAATTAT
15637 TGTATTATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 20
0.71 0.06 0.23
Matches are distributed among these distances:
14 3 0.05
15 7 0.11
16 15 0.24
17 14 0.23
18 17 0.27
19 6 0.10
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
TATTAATTATATTATAG
Found at i:15675 original size:68 final size:68
Alignment explanation
Indices: 15543--15677 Score: 150
Period size: 68 Copynumber: 2.0 Consensus size: 68
15533 AAAACAATTA
* * *
15543 TATTAATTATATTATAAATATTAATTATTATTTATAATTATATTAGATTATTAGAATAATATTTA
1 TATTAATTATATTATAAATATTAATTATTATTTAGAATTATATAAGATAATTAGAATAATATTTA
15608 TAG
66 TAG
* * * * *
15611 TATTAATTATATTATATATTTATTATTGTATTATTT-GAATTAT-TAATATAATTATAATTA-AT
1 TATTAATTATATTATA-A-ATATTAAT-TATTATTTAGAATTATATAAGATAATTAGAATAATAT
15673 TTATA
63 TTATA
15678 TTGTAAGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
68 23 0.41
69 13 0.23
70 12 0.21
71 8 0.14
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (68 bp):
TATTAATTATATTATAAATATTAATTATTATTTAGAATTATATAAGATAATTAGAATAATATTTA
TAG
Found at i:16352 original size:15 final size:16
Alignment explanation
Indices: 16334--16364 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
16324 TAAATATTTT
16334 AATTATTGATT-AATA
1 AATTATTGATTCAATA
16349 AATTATTGATTCAATA
1 AATTATTGATTCAATA
16365 GACTATTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (16 bp):
AATTATTGATTCAATA
Found at i:16405 original size:16 final size:15
Alignment explanation
Indices: 16376--16410 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
16366 ACTATTCACA
16376 TATACATTTAATTAT
1 TATACATTTAATTAT
*
16391 TATACTATTTGATTAT
1 TATAC-ATTTAATTAT
16407 TATA
1 TATA
16411 AAATTACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (15 bp):
TATACATTTAATTAT
Found at i:16604 original size:21 final size:21
Alignment explanation
Indices: 16557--16606 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
16547 ATATGTTCAA
16557 ATAATTA-ATTTATTATAACT
1 ATAATTATATTTATTATAACT
16577 -TATATTATATTATATT-TAACT
1 ATA-ATTATATT-TATTATAACT
16598 ATAATTATA
1 ATAATTATA
16607 ATTAAAGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 2 0.08
20 4 0.15
21 14 0.54
22 6 0.23
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (21 bp):
ATAATTATATTTATTATAACT
Found at i:16827 original size:12 final size:12
Alignment explanation
Indices: 16805--16834 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
16795 ATTATTAACA
16805 ATATT-TAATAT
1 ATATTATAATAT
16816 ATATTATAATAT
1 ATATTATAATAT
16828 ATATTAT
1 ATATTAT
16835 TACTATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
ATATTATAATAT
Found at i:17422 original size:21 final size:21
Alignment explanation
Indices: 17396--17435 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
17386 TATAGTAATA
17396 AATTATTAA-ATAATTTATTGG
1 AATTATTAATAT-ATTTATTGG
17417 AATTATTAATATATTTATT
1 AATTATTAATATATTTATT
17436 TTTTAAGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (21 bp):
AATTATTAATATATTTATTGG
Found at i:17495 original size:16 final size:16
Alignment explanation
Indices: 17474--17508 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
17464 AATTTCAATA
17474 ATTAATA-TATTAGTTT
1 ATTAATAGT-TTAGTTT
17490 ATTAATAGTTTAGTTT
1 ATTAATAGTTTAGTTT
17506 ATT
1 ATT
17509 GCATTAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.94
17 1 0.06
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (16 bp):
ATTAATAGTTTAGTTT
Found at i:17585 original size:16 final size:16
Alignment explanation
Indices: 17564--17596 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17554 TTTTGTACTA
17564 TTGTTT-AATTATGTAT
1 TTGTTTAAATTAT-TAT
17580 TTGTTTAAATTATTAT
1 TTGTTTAAATTATTAT
17596 T
1 T
17597 ATTTAAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (16 bp):
TTGTTTAAATTATTAT
Found at i:17779 original size:28 final size:29
Alignment explanation
Indices: 17748--17830 Score: 75
Period size: 27 Copynumber: 3.0 Consensus size: 29
17738 ATTTGATTTC
* *
17748 TAATAATGTTAATT-TAAATTT-TAATATT
1 TAATAATATTAATTATAAATTTGAAATA-T
* *
17776 TAATAGTATTAATTATAAGTTTGAAATAT
1 TAATAATATTAATTATAAATTTGAAATAT
* *
17805 TAAT-A-ATTAATAATAGATTTGAAATA
1 TAATAATATTAATTATAAATTTGAAATA
17831 GATACTTGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
27 18 0.40
28 12 0.27
29 11 0.24
30 4 0.09
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.46
Consensus pattern (29 bp):
TAATAATATTAATTATAAATTTGAAATAT
Found at i:18658 original size:13 final size:13
Alignment explanation
Indices: 18640--18683 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
18630 CTAATCTATA
18640 TATTAATATAAAT
1 TATTAATATAAAT
*
18653 TATTAATATATAT
1 TATTAATATAAAT
*
18666 TATGGAATATGAAAT
1 TAT-TAATAT-AAAT
18681 TAT
1 TAT
18684 ATTATTAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 15 0.58
14 5 0.19
15 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (13 bp):
TATTAATATAAAT
Found at i:19972 original size:23 final size:24
Alignment explanation
Indices: 19946--20005 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 24
19936 AGTTATATTT
*
19946 TAATTAATATATTAATAATTA-AA
1 TAATTAATATAATAATAATTATAA
* * *
19969 TAATTATTATAATATTAATTATTA
1 TAATTAATATAATAATAATTATAA
19993 TAATT-ATATAATA
1 TAATTAATATAATA
20006 CTGCATAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 25 0.81
24 6 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TAATTAATATAATAATAATTATAA
Found at i:20103 original size:41 final size:42
Alignment explanation
Indices: 20018--20109 Score: 109
Period size: 41 Copynumber: 2.2 Consensus size: 42
20008 GCATAATATA
* *
20018 AATATATTATTGAATAAAATTGATAATATATCTAATTATAAT
1 AATATATTATTGAATAAAATTGATAATATATCTAAGTATTAT
* *
20060 AATTATATTGTT-AATATAAA-T-ATAATATATTTAAGTATTAT
1 AA-TATATTATTGAATA-AAATTGATAATATATCTAAGTATTAT
20101 AATATATTA
1 AATATATTA
20110 AATATTATCT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
40 6 0.14
41 19 0.44
42 7 0.16
43 11 0.26
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (42 bp):
AATATATTATTGAATAAAATTGATAATATATCTAAGTATTAT
Found at i:20115 original size:17 final size:18
Alignment explanation
Indices: 20080--20117 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
20070 TTAATATAAA
*
20080 TATAATATATTTAAGTAT
1 TATAATATATTTAAATAT
20098 TATAATATA-TTAAATAT
1 TATAATATATTTAAATAT
20115 TAT
1 TAT
20118 CTTTAACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
TATAATATATTTAAATAT
Found at i:20879 original size:20 final size:20
Alignment explanation
Indices: 20838--20879 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
20828 TATTTGATTC
* *
20838 TAAATAGTAATAATTATAAT
1 TAAATAATAATAACTATAAT
*
20858 TAAATAATAATAACTATTAT
1 TAAATAATAATAACTATAAT
20878 TA
1 TA
20880 TTAATTATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TAAATAATAATAACTATAAT
Found at i:21142 original size:16 final size:16
Alignment explanation
Indices: 21113--21155 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
21103 ACATATTTAT
*
21113 TATAT-ATAATTATAA
1 TATATAATAAATATAA
21128 TATATAATAAATATAA
1 TATATAATAAATATAA
*
21144 TAT-TAATTAATA
1 TATATAATAAATA
21156 ATTGTATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TATATAATAAATATAA
Found at i:21206 original size:17 final size:18
Alignment explanation
Indices: 21190--21246 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 18
21180 AATATAATTA
21190 ATTAATATT--TAATATT
1 ATTAATATTAATAATATT
*
21206 A-TAATATTATTAATATT
1 ATTAATATTAATAATATT
* * *
21223 ACTATTATAAATAAT-TT
1 ATTAATATTAATAATATT
21240 ATTAATA
1 ATTAATA
21247 ATATTTAATC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
15 7 0.21
16 1 0.03
17 15 0.45
18 10 0.30
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTAATATTAATAATATT
Found at i:21209 original size:23 final size:22
Alignment explanation
Indices: 21182--21246 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
21172 AATTAGTAAA
21182 TATAATTAATTAATATTTAATAT
1 TATAATTAATTAATA-TTAATAT
* *
21205 TATAATATTATTAATATTACTAT
1 TATAAT-TAATTAATATTAATAT
*
21228 TATAAATAATT--TATTAATA
1 TATAATTAATTAATATTAATA
21247 ATATTTAATC
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 7 0.19
22 4 0.11
23 17 0.47
24 8 0.22
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TATAATTAATTAATATTAATAT
Found at i:21216 original size:11 final size:12
Alignment explanation
Indices: 21202--21251 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 12
21192 TAATATTTAA
21202 TATT-ATAATAT
1 TATTAATAATAT
21213 TATTAATATTACTAT
1 TATTAATA--A-TAT
*
21228 TATAAATAAT-T
1 TATTAATAATAT
21239 TATTAATAATAT
1 TATTAATAATAT
21251 T
1 T
21252 TAATCTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
11 14 0.44
12 6 0.19
13 1 0.03
14 1 0.03
15 10 0.31
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTAATAATAT
Found at i:21251 original size:23 final size:20
Alignment explanation
Indices: 21199--21255 Score: 53
Period size: 23 Copynumber: 2.6 Consensus size: 20
21189 AATTAATATT
21199 TAATATTATAATATTATTAA
1 TAATATTATAATATTATTAA
21219 TATTACTATTATAAATAATTTATTAA
1 TA--A-TATTAT-AAT-A-TTATTAA
21245 TAATATT-TAAT
1 TAATATTATAAT
21256 CTATAAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
20 2 0.06
21 3 0.10
22 2 0.06
23 10 0.32
24 4 0.13
25 1 0.03
26 9 0.29
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TAATATTATAATATTATTAA
Found at i:21283 original size:24 final size:24
Alignment explanation
Indices: 21246--21293 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
21236 ATTTATTAAT
*
21246 AATATTTAATCTATAAATTAATTA
1 AATATTTAATCTATAAATAAATTA
21270 AATATTT-ATCCTATAAATAAATTA
1 AATATTTAAT-CTATAAATAAATTA
21294 TCAATATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (24 bp):
AATATTTAATCTATAAATAAATTA
Found at i:21285 original size:53 final size:52
Alignment explanation
Indices: 21186--21299 Score: 126
Period size: 53 Copynumber: 2.1 Consensus size: 52
21176 AGTAAATATA
* *
21186 ATTAATTAATATTTAATATTATAATATTATTAATATTACTATTATAAATAATTT
1 ATTAA-TAATATTTAATACTATAATATTATTAATATTA-TATTATAAATAAATT
21240 ATTAATAATATTTAAT-CTATAA-ATTAATTAAATATT-TATCCTATAAATAAATT
1 ATTAATAATATTTAATACTATAATATT-ATT-AATATTATAT--TATAAATAAATT
*
21293 ATCAATA
1 ATTAATA
21300 TAAAAATAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
51 6 0.11
52 8 0.15
53 34 0.64
54 5 0.09
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.47
Consensus pattern (52 bp):
ATTAATAATATTTAATACTATAATATTATTAATATTATATTATAAATAAATT
Found at i:21776 original size:24 final size:23
Alignment explanation
Indices: 21749--21816 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
21739 TTTTATGAAT
*
21749 ATTATTATAATACAATTAATAATA
1 ATTAATATAATA-AATTAATAATA
* *
21773 ATTAATATTTATAAAATAATAATA
1 ATTAATA-TAATAAATTAATAATA
**
21797 ATTGGTATAATAATATTAAT
1 ATTAATATAATAA-ATTAAT
21817 TATATAATAC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
23 5 0.14
24 26 0.74
25 4 0.11
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (23 bp):
ATTAATATAATAAATTAATAATA
Found at i:22775 original size:182 final size:178
Alignment explanation
Indices: 22080--22948 Score: 810
Period size: 180 Copynumber: 4.8 Consensus size: 178
22070 ACAATTTGTT
* * * * * * *
22080 TAATTATCGATTATCAATAATCGTTTTGACCTTTTGTTTAGTCATAAAATAATTGCTTCAAC-TC
1 TAATTATCTATT-TC-A-AATCGTTATAACCTTTTGTTTTGTCATAAAACAATTG-TTTATCTTC
* ** * *
22144 ATACATGCTTATTTGAAATAAAATAATACTAATTTATTAACATTTAGAAAATTATTAAGTA-AGA
62 ATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT-GAAAATTAATAAGTAGAG-
* * * * *
22208 AATTAGAAAAA-AAATCTATTTACCGAACAAGTTCAAATATTTTTGACTATTTGAA
125 ATTTA-AAAAATAAATCTATTTATCGAACAA-TTCAAATAGTTATGACTATTTAAA
* * * * * * * *
22263 TAATTATCTATTTAAAATTGTTATGACCTTATATTTTATCCTAAAACAATTGTTTCA-ATTCATA
1 TAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTT-ATCTTCATA
* * * * * *
22327 AAAGCTTA-TCTGAAATAAAATAATATTACTTTATTAATATTATAAAAATTGATAAGTTAGAGAT
65 CAAGCTTATTC-AAAATAAAATAATACTAATTTATTAATATT-TGAAAATTAATAAG-TAGAGAT
* * *
22391 TTAAAACATAAATC-AGTTTATCGAATCAATTCAAATAATTATGACCATTTAAA
127 TTAAAAAATAAATCTA-TTTATCGAA-CAATTCAAATAGTTATGACTATTTAAA
* * * *
22444 TAATTATCTATTTCAAATCATTATGAA-CTTTT-TTTTGTCATAAAAAAATTGTTTTTCATCATA
1 TAATTATCTATTTCAAATCGTTAT-AACCTTTTGTTTTGTCATAAAACAATTGTTTATCTTCATA
* * *
22507 CAAACCTATTCAGAAA-AAAATAATACTAATTTATTAATATTTGAAAAATTAATGAGTAGGAGAT
65 CAAGCTTATTCA-AAATAAAATAATACTAATTTATTAATATTTG-AAAATTAATAAGTA-GAGAT
*
22571 TTAAAAAATAAATCTATTTATCGAATCAATTCAAATAGTTATGACTGTTTAAA
127 TTAAAAAATAAATCTATTTATCGAA-CAATTCAAATAGTTATGACTATTTAAA
* * * *
22624 TAATTATATATTTCCAATCGTTATAACCTTTTGTTTTGTCATAAAAACAATTATTTATCTTTATA
1 TAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCAT-AAAACAATTGTTTATCTTCATA
* * * * *
22689 CAAGCTTATTCAAAATAAAATAATACTAATCTAGTAATATTATGAAATTTAATAACTGATAGATT
65 CAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT-TGAAAATTAATAAGT-AGAGATT
* * * * * *
22754 TAAAAAATAAATTTGTTTATCGAACTAATTCAAAATAGTTAAGGCTATATGAA
128 TAAAAAATAAATCTATTTATCGAAC-AATTC-AAATAGTTATGACTATTTAAA
* ** * * * *
22807 TAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTTGTAAAACAAATGTTTTTGTTCATAT
1 TAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTATCTTCATAC
* * * *
22872 AAGTTTGTTCAAAATAAAATAATATTAATTTATTAATATTTCAAAA-T--TAA-TAGAGATTTAA
66 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTGAAAATTAATAAGTAGAGATTTAA
*
22933 TAAATAAATCTATTTA
131 AAAATAAATCTATTTA
22949 CCATACTATT
Statistics
Matches: 565, Mismatches: 97, Indels: 55
0.79 0.14 0.08
Matches are distributed among these distances:
176 22 0.04
177 1 0.00
178 3 0.01
179 8 0.01
180 224 0.40
181 89 0.16
182 151 0.27
183 67 0.12
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (178 bp):
TAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTATCTTCATAC
AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTGAAAATTAATAAGTAGAGATTTAA
AAAATAAATCTATTTATCGAACAATTCAAATAGTTATGACTATTTAAA
Done.