Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168292.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_519, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24184
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30


Found at i:875 original size:44 final size:44

Alignment explanation


    Indices: 825--947  Score: 131
    Period size: 44  Copynumber: 2.8  Consensus size: 44

        815 AAGGGCCATC

                             *          * *              
        825 TTATGCCAATGTTGATCGAGGCATGTGCTCGCAC-AAGTCTAAGA
          1 TTATGCCAATGTTGATCAAGGCATGTGCCCACACTAAGTCT-AGA

                         *           *     *    *       
        869 TTATGCCAATGTTAATCAAGGCATGCGCCCATACTAGGTCTAGA
          1 TTATGCCAATGTTGATCAAGGCATGTGCCCACACTAAGTCTAGA

                  *    *              *        
        913 TTATGCTAATGCTGATCAAGGCATGTTCCTCACAC
          1 TTATGCCAATGTTGATCAAGGCATGTGCC-CACAC

        948 CAAGGGCCAG


Statistics
Matches: 64,  Mismatches: 13, Indels: 3
        0.80            0.16        0.04

Matches are distributed among these distances:
  44   55  0.86
  45    9  0.14

ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28


Consensus pattern (44 bp):   
TTATGCCAATGTTGATCAAGGCATGTGCCCACACTAAGTCTAGA

Found at i:14973 original size:45 final size:45

Alignment explanation


    Indices: 14880--14974  Score: 102
    Period size: 45  Copynumber: 2.1  Consensus size: 45

      14870 TTGAGGCATA

                *         *            *        *  ***   
      14880 TGCCCATACCAAAGGCTAGCTTATGCCGATAGTGGTTGAGGTAAG
          1 TGCCTATACCAAAGACTAGCTTATGCCAATAGTGGTCGAAACAAG

                                                        * 
      14925 TGCCTATACCAAAGACTAGCTTATGCCAAT-GATGGTCGAAACATG
          1 TGCCTATACCAAAGACTAGCTTATGCCAATAG-TGGTCGAAACAAG

                 
      14970 TGCCT
          1 TGCCT

      14975 GAACCATACG


Statistics
Matches: 41,  Mismatches: 8, Indels: 2
        0.80            0.16        0.04

Matches are distributed among these distances:
  44    1  0.02
  45   40  0.98

ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25


Consensus pattern (45 bp):   
TGCCTATACCAAAGACTAGCTTATGCCAATAGTGGTCGAAACAAG

Found at i:15037 original size:23 final size:23

Alignment explanation


    Indices: 15010--15064  Score: 74
    Period size: 23  Copynumber: 2.4  Consensus size: 23

      15000 GATGGTAGAG

                     *             
      15010 GCATGTGCCTACACAATGCACTA
          1 GCATGTGCCCACACAATGCACTA

                          *        
      15033 GCATGTGCCCACACCATGCACTA
          1 GCATGTGCCCACACAATGCACTA

            *   *    
      15056 ACATATGCC
          1 GCATGTGCC

      15065 ATTGATGGTC


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  23   28  1.00

ACGTcount: A:0.29, C:0.35, G:0.16, T:0.20


Consensus pattern (23 bp):   
GCATGTGCCCACACAATGCACTA
Done.