Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168293.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_52, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 159655
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
File 2 of 3
Found at i:92825 original size:20 final size:20
Alignment explanation
Indices: 92700--92825 Score: 75
Period size: 20 Copynumber: 6.1 Consensus size: 20
92690 AACAATATAT
92700 ATTAGTTTTAATATTTAAAATTA
1 ATTA-TTTTAAT-TTT-AAATTA
*
92723 A-TATTTAAATTTTAAA-TA
1 ATTATTTTAATTTTAAATTA
* *
92741 TTTATATTATATTTT-AATTA
1 ATTATTTTA-ATTTTAAATTA
*
92761 ATTATATATT-ATAATTAAATTA
1 ATTAT-T-TTAAT-TTTAAATTA
*
92783 GATTATTATTTAATTAT-AA-TA
1 -ATTA-T-TTTAATTTTAAATTA
92804 ATTATTTTAATTTTAAATTA
1 ATTATTTTAATTTTAAATTA
92824 AT
1 AT
92826 AAGTAAAAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 27
0.69 0.08 0.23
Matches are distributed among these distances:
18 10 0.12
19 13 0.16
20 24 0.30
21 10 0.12
22 11 0.14
23 8 0.10
24 5 0.06
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTATTTTAATTTTAAATTA
Found at i:93296 original size:16 final size:15
Alignment explanation
Indices: 93268--93311 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
93258 TAAATACAAT
*
93268 TATTAATTAATATTA
1 TATTTATTAATATTA
93283 TATTTATTATATATTA
1 TATTTATTA-ATATTA
*
93299 TAATTATATAATA
1 TATTTAT-TAATA
93312 AATATATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 8 0.32
16 15 0.60
17 2 0.08
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTTATTAATATTA
Found at i:93597 original size:18 final size:16
Alignment explanation
Indices: 93574--93647 Score: 66
Period size: 15 Copynumber: 4.7 Consensus size: 16
93564 TTAACTTTAA
93574 ATAATATAATCGATAATT
1 ATAATATAAT--ATAATT
*
93592 ATAATA-AATTTAATT
1 ATAATATAATATAATT
*
93607 ATAATATTAATATAATA
1 ATAATA-TAATATAATT
*
93624 AT-ATATAAAATAATT
1 ATAATATAATATAATT
93639 A-AATA-AATA
1 ATAATATAATA
93648 ACCCACTTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
14 3 0.06
15 23 0.49
16 3 0.06
17 12 0.26
18 6 0.13
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (16 bp):
ATAATATAATATAATT
Found at i:94152 original size:24 final size:22
Alignment explanation
Indices: 94108--94183 Score: 80
Period size: 24 Copynumber: 3.2 Consensus size: 22
94098 GTAAACTAAT
*
94108 AATTAAATAATTTATGATATTAA
1 AATTTAATAATTTATG-TATTAA
94131 AATTTAATTATATTTATGTATTAA
1 AATTTAA-TA-ATTTATGTATTAA
*
94155 AATATCAATAATTTATTGTATTAA
1 AAT-TTAATAATTTA-TGTATTAA
*
94179 TATTT
1 AATTT
94184 CTAGAACTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
23 12 0.27
24 23 0.51
25 10 0.22
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.50
Consensus pattern (22 bp):
AATTTAATAATTTATGTATTAA
Found at i:94619 original size:13 final size:13
Alignment explanation
Indices: 94601--94692 Score: 57
Period size: 13 Copynumber: 6.9 Consensus size: 13
94591 CCTAAAATAA
94601 ATATTATAATTAT
1 ATATTATAATTAT
94614 ATATTAT-ATTA-
1 ATATTATAATTAT
94625 ATTATTTATAATT-T
1 A-TA-TTATAATTAT
*
94639 AATATTAAAATTAT
1 -ATATTATAATTAT
* *
94653 A-AGTAATTATTAGT
1 ATA-TTATAATTA-T
*
94667 ATATTATAATTGT
1 ATATTATAATTAT
*
94680 ATAATTACAATTA
1 AT-ATTATAATTA
94693 ATGAATAAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 19
0.68 0.10 0.22
Matches are distributed among these distances:
11 1 0.02
12 7 0.12
13 28 0.47
14 22 0.37
15 2 0.03
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (13 bp):
ATATTATAATTAT
Found at i:94949 original size:10 final size:10
Alignment explanation
Indices: 94928--94981 Score: 56
Period size: 10 Copynumber: 5.1 Consensus size: 10
94918 ATAACAAATT
94928 ATTTAT-TTA
1 ATTTATATTA
94937 ATTTATATTA
1 ATTTATATTA
*
94947 ATTAATATATATG
1 ATT--TATAT-TA
94960 ATTTAATATTA
1 ATTT-ATATTA
94971 ATTTATATTA
1 ATTTATATTA
94981 A
1 A
94982 ATAACTAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
9 6 0.16
10 13 0.34
11 6 0.16
12 9 0.24
13 4 0.11
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (10 bp):
ATTTATATTA
Found at i:95060 original size:32 final size:32
Alignment explanation
Indices: 95024--95099 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
95014 TAATAATACT
95024 ATAAGAT-TTAATATATATAAAATTAAT-AATTA
1 ATAAGATATT-ATATATAT-AAATTAATAAATTA
* *
95056 ATAAGATATTATATTTATTAATTAATAAATTA
1 ATAAGATATTATATATATAAATTAATAAATTA
*
95088 ATTA-ATATTATA
1 ATAAGATATTATA
95100 ATTACAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
31 15 0.38
32 22 0.56
33 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (32 bp):
ATAAGATATTATATATATAAATTAATAAATTA
Found at i:95160 original size:15 final size:15
Alignment explanation
Indices: 95140--95168 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
95130 TTTATTATAA
95140 TTATAATATTATTTG
1 TTATAATATTATTTG
95155 TTATAATATTATTT
1 TTATAATATTATTT
95169 TAATTGTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TTATAATATTATTTG
Found at i:95598 original size:181 final size:177
Alignment explanation
Indices: 95281--95726 Score: 535
Period size: 181 Copynumber: 2.5 Consensus size: 177
95271 TTTAATAATT
* * * *
95281 ATAATAGAATTATTTTTTAAATCTCTTACTTATAAAATTTTGAAATATTAATAAATTACTATTAT
1 ATAATACATTTATTTTTTAAATCTC-TA-TTAT-AATTTTTGAAATATTAATAAATTAGTATTAT
* * ** *
95346 TTTATTTCGAATAAACTTGTATGAGCTAAAATAATTGTTTTATGACAAAACAAAAGCTCATAACG
63 TTTATTTCAAATAAACTTGTATGAGATAAAATAATTACTTTATGACAAAACAAAAGCTCATAACA
* *
95411 ATTTGAAATAGATAATTGTTCATATAGTCTTAACTATTTGAACTAGTTCGA
128 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTC-A
*
95462 A-AA-ACGTATTTATTTTTTAAATCTCATAGTTATGAATTTTTTG-AATATTATTAAATTAGTAT
1 ATAATAC--ATTTATTTTTTAAATCTC-TA-TTAT-AA-TTTTTGAAATATTAATAAATTAGTAT
* * * * *
95524 TATTTTATTCCAAATAAACTTGTATGA-ATAGAAATAATTACTTTATGATAGAATAAAAGGTCAT
60 TATTTTATTTCAAATAAACTTGTATGAGATA-AAATAATTACTTTATGACAAAACAAAAGCTCAT
95588 AACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCA
124 AACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCA
* * *
95642 ATTAATACATTTATTTTTTCAATCTC--TTATTAATTCTAGAAATATTAATAAATTAGTATTATT
1 A-TAATACATTTATTTTTTAAATCTCTATTA-TAATTTTTGAAATATTAATAAATTAGTATTATT
**
95705 TTATTTCAAATAAGTTTGTATG
64 TTATTTCAAATAAACTTGTATG
95727 TTGAAAAACA
Statistics
Matches: 229, Mismatches: 27, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
176 4 0.02
177 46 0.20
178 1 0.00
179 1 0.00
180 6 0.03
181 162 0.71
182 7 0.03
183 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (177 bp):
ATAATACATTTATTTTTTAAATCTCTATTATAATTTTTGAAATATTAATAAATTAGTATTATTTT
ATTTCAAATAAACTTGTATGAGATAAAATAATTACTTTATGACAAAACAAAAGCTCATAACAATT
TGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCA
Found at i:95872 original size:25 final size:27
Alignment explanation
Indices: 95825--95883 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 27
95815 ACAAATATTA
*
95825 TAATTATAATATAATTAATTTATTAAT
1 TAATTATAATATAATTAACTTATTAAT
*
95852 TAATTA-AATATAA-TAACTTATTCAT
1 TAATTATAATATAATTAACTTATTAAT
*
95877 TATTTAT
1 TAATTAT
95884 TTTTATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 15 0.54
26 7 0.25
27 6 0.21
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (27 bp):
TAATTATAATATAATTAACTTATTAAT
Found at i:97817 original size:23 final size:22
Alignment explanation
Indices: 97783--97825 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
97773 GAATTTTAAT
97783 AATTAAAGTTATCAGATATTATA
1 AATTAAAGTTATCAG-TATTATA
*
97806 AATTAATA-TTATTAGTATTA
1 AATTAA-AGTTATCAGTATTA
97826 GAATAACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 5 0.28
23 12 0.67
24 1 0.06
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (22 bp):
AATTAAAGTTATCAGTATTATA
Found at i:97924 original size:23 final size:24
Alignment explanation
Indices: 97872--98009 Score: 83
Period size: 24 Copynumber: 5.8 Consensus size: 24
97862 ATCTTATAAA
*
97872 ATTAA-TAATAATATGTATTATTA-T
1 ATTAATTAATAA-AT-TATTATAATT
97896 ATTAATTAATAAATTATTATAATT
1 ATTAATTAATAAATTATTATAATT
* * *
97920 A-TAATATTATAATTTAGTA-AA-T
1 ATTAAT-TAATAAATTATTATAATT
* *
97942 ATTTAATTAAATATTATTATAATAATT
1 A-TTAATT-AATA-AATTATTATAATT
* **
97969 ATTAGTTAAT-AATTGA-TATAAAA
1 ATTAATTAATAAATT-ATTATAATT
97992 ATTAATTAATAAATTATT
1 ATTAATTAATAAATTATT
98010 TTTTTCGAAA
Statistics
Matches: 87, Mismatches: 15, Indels: 24
0.69 0.12 0.19
Matches are distributed among these distances:
22 2 0.02
23 31 0.36
24 32 0.37
25 13 0.15
26 7 0.08
27 2 0.02
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (24 bp):
ATTAATTAATAAATTATTATAATT
Found at i:99297 original size:19 final size:18
Alignment explanation
Indices: 99273--99319 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
99263 TGTTTACAAA
99273 ACTATTTCAAATAATTAT
1 ACTATTTCAAATAATTAT
*
99291 GACTATTT-GAATAATTAT
1 -ACTATTTCAAATAATTAT
99309 -CTATTTCAAAT
1 ACTATTTCAAAT
99320 TGTTATTACC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 6 0.24
17 3 0.12
18 9 0.36
19 7 0.28
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (18 bp):
ACTATTTCAAATAATTAT
Found at i:99653 original size:16 final size:17
Alignment explanation
Indices: 99621--99653 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
99611 GACCAGCGCA
99621 AACAATTATGACTATTTG
1 AACAATTAT-ACTATTTG
99639 AACAATTAT-CTATTT
1 AACAATTATACTATTT
99654 CAAATCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (17 bp):
AACAATTATACTATTTG
Found at i:99811 original size:181 final size:181
Alignment explanation
Indices: 99502--99895 Score: 447
Period size: 181 Copynumber: 2.2 Consensus size: 181
99492 GTTTTATTAT
* * **
99502 AAAACAATTGTTTCTGTTCATATAATCTTATTCAGAATAAAGTAATGCTAACTTATTAATATTTT
1 AAAACAATTGTTTCTGTTCATACAAGCTTATTCAGAATAAAGTAATGCTAACTTATTAATATTCC
* * * * * ** *
99567 GAAAATTAATAAGTAATGGATTTAGAAAATGTATCTTTTGGCTTGACCAGCGCAAACAATTATGA
66 AAAAATTAATAAATAATGGATTTAAAAAATGAATCTTTTGACTAAACAAGCGCAAACAATTATGA
*
99632 CTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCTCAC
131 CTATTTGAACAATTATCTAGTTCAAATCATTATGACCTTTTGTTTTCTCAC
* *
99683 AAAACAATTGTATT-TGTTCATACAAGCTTATTCAGAATAACA-TAATTCTAATTTATTAATATT
1 AAAACAATTGT-TTCTGTTCATACAAGCTTATTCAGAATAA-AGTAATGCTAACTTATTAATATT
* ** *
99746 CCAAAAATTAATAAATGA-GAGATTTAAAAAATGAATCTGTTT-ACTAAACAAGTTCAAATAATT
64 CCAAAAATTAATAAATAATG-GATTTAAAAAATGAATCT-TTTGACTAAACAAGCGCAAACAATT
*** * * * * *
99809 ATGACTATTTGAACAATTATCTAGTTCAAATTGCTATAACCATTTGTATTGTCAT
127 ATGACTATTTGAACAATTATCTAGTTCAAATCATTATGACCTTTTGTTTTCTCAC
* *
99864 AAAATAATTTTTTCTAG-TCATACAAGCTTATT
1 AAAACAATTGTTTCT-GTTCATACAAGCTTATT
99896 TCAAATCTGT
Statistics
Matches: 178, Mismatches: 29, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
180 3 0.02
181 168 0.94
182 7 0.04
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (181 bp):
AAAACAATTGTTTCTGTTCATACAAGCTTATTCAGAATAAAGTAATGCTAACTTATTAATATTCC
AAAAATTAATAAATAATGGATTTAAAAAATGAATCTTTTGACTAAACAAGCGCAAACAATTATGA
CTATTTGAACAATTATCTAGTTCAAATCATTATGACCTTTTGTTTTCTCAC
Found at i:100168 original size:301 final size:301
Alignment explanation
Indices: 99626--100196 Score: 725
Period size: 301 Copynumber: 1.9 Consensus size: 301
99616 GCGCAAACAA
99626 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCTCACAAAACAAT
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCTCACAAAACAAT
* *
99691 TGTATTTGTTCATACAAGCTTATTCAGAATAACATAATTCTAATTTATTAATATTCCAAAAATTA
66 TATATTTGTTCATACAAGCTTATTCAGAATAAAATAATTCTAATTTATTAATATTCCAAAAATTA
* * * * * * * *
99756 ATAAATGAGAGATTTAAAAAATGAATCTGTTTACTAAACAAGTTCAAATAATTATGACTATTTGA
131 ATAAATAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAATAATAACTATCTGA
** ** * * * *
99821 ACAATTATCTAGTTCAAATTGCTATAACCATTTGTATTGTCATAAAATAATTTTTTCTAGTCATA
196 ACAATTATCTAGTTCAAATCACTATAACCATTTGTATTACCATAAAACAATTATATCAAGTCATA
99886 CAAGCTTATTTCAAATCTGTTTATCGAATAATTTTGAATAG
261 CAAGCTTATTTCAAATCTGTTTATCGAATAATTTTGAATAG
* ** * *
99927 TTATGACTA-TTGAAACAATTATTTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAA
1 TTATGACTATTTG-AACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCTCACAAAACAA
* ** * * * *
99991 TTATTTTTGTTCATATTAGCTTATTCGGATTAAAATAATAT-TAATTTATTAATATTTCAACAAT
65 TTATATTTGTTCATACAAGCTTATTCAGAATAAAATAAT-TCTAATTTATTAATATTCCAAAAAT
* * * *
100055 TAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTAATAATTATCT
129 TAATAAATAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAATAATAACTATCT
* * * * * *
100120 GAATAATTATCTATTTCAAATCATTATGACCTTTTGT-TTCACCATAAAACAATTATATCAATTC
194 GAACAATTATCTAGTTCAAATCACTATAACCATTTGTATT-ACCATAAAACAATTATATCAAGTC
*
100184 ATATAAGCTTATT
258 ATACAAGCTTATT
100197 CGAAATAAAA
Statistics
Matches: 226, Mismatches: 41, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
300 5 0.02
301 220 0.97
302 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (301 bp):
TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCTCACAAAACAAT
TATATTTGTTCATACAAGCTTATTCAGAATAAAATAATTCTAATTTATTAATATTCCAAAAATTA
ATAAATAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAATAATAACTATCTGA
ACAATTATCTAGTTCAAATCACTATAACCATTTGTATTACCATAAAACAATTATATCAAGTCATA
CAAGCTTATTTCAAATCTGTTTATCGAATAATTTTGAATAG
Found at i:100254 original size:181 final size:181
Alignment explanation
Indices: 99943--100289 Score: 469
Period size: 181 Copynumber: 1.9 Consensus size: 181
99933 CTATTGAAAC
* ** *** * *** *
99943 AATTATTTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTGTTCATATT
1 AATTATCTATTTCAAATCATTATGACCTTTTGTTTCACCATAAAACAATTATATCAATTCATATA
* * * * * *
100008 AGCTTATTCGGATTAAAATAATATTAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTA
66 AGCTTATTCGAAATAAAATAATACTAACTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTA
* * *
100073 AAAAATAAATATGTTTACCGAACAAGTTCAAATAGTAATAATTATCTGAAT
131 AAAAATAAATATATTTACCAAAAAAGTTCAAATAGTAATAATTATCTGAAT
100124 AATTATCTATTTCAAATCATTATGACCTTTTGTTTCACCATAAAACAATTATATCAATTCATATA
1 AATTATCTATTTCAAATCATTATGACCTTTTGTTTCACCATAAAACAATTATATCAATTCATATA
* * *
100189 AGCTTATTCGAAATAAAATAATACTAACTTATTACTATTCCAAAAATTAATGAGTAAGAGATTTA
66 AGCTTATTCGAAATAAAATAATACTAACTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTA
* *
100254 AAAAATGAATCTATTTACCAAAAAAGTTCAAATAGT
131 AAAAATAAATATATTTACCAAAAAAGTTCAAATAGT
100290 GTATTAATAT
Statistics
Matches: 141, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
181 141 1.00
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (181 bp):
AATTATCTATTTCAAATCATTATGACCTTTTGTTTCACCATAAAACAATTATATCAATTCATATA
AGCTTATTCGAAATAAAATAATACTAACTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTA
AAAAATAAATATATTTACCAAAAAAGTTCAAATAGTAATAATTATCTGAAT
Found at i:100745 original size:19 final size:19
Alignment explanation
Indices: 100718--100754 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
100708 TCAAATAGTA
*
100718 ATAACTATTTGAACTGGTC
1 ATAACTATTTAAACTGGTC
*
100737 ATAATTATTTAAACTGGT
1 ATAACTATTTAAACTGGT
100755 TTGGTAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
ATAACTATTTAAACTGGTC
Found at i:101397 original size:12 final size:13
Alignment explanation
Indices: 101364--101414 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 13
101354 TAATAATAAT
*
101364 ATATAATTATTTA
1 ATATAATTAGTTA
* *
101377 TTTTAATTA-TTA
1 ATATAATTAGTTA
101389 ATATAATTA-TTA
1 ATATAATTAGTTA
*
101401 ATATTATTAGTTA
1 ATATAATTAGTTA
101414 A
1 A
101415 AATTTATATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
12 21 0.66
13 11 0.34
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (13 bp):
ATATAATTAGTTA
Found at i:101414 original size:25 final size:25
Alignment explanation
Indices: 101364--101414 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
101354 TAATAATAAT
* *
101364 ATATAATTATTTATTTTAATTATTA
1 ATATAATTATTAATATTAATTATTA
101389 ATATAATTATTAATATT-ATTAGTTA
1 ATATAATTATTAATATTAATTA-TTA
101414 A
1 A
101415 AATTTATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (25 bp):
ATATAATTATTAATATTAATTATTA
Found at i:103122 original size:22 final size:22
Alignment explanation
Indices: 103090--103132 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
103080 TATAAACAAT
*
103090 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
103112 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
103133 TAACTAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:103845 original size:17 final size:17
Alignment explanation
Indices: 103820--103861 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
103810 AACAATCTTA
*
103820 ATTATTATATTT-TACAT
1 ATTAATATATTTCTA-AT
*
103837 ATTAATATATTTCTATT
1 ATTAATATATTTCTAAT
103854 ATTAATAT
1 ATTAATAT
103862 TAACAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 20 0.91
18 2 0.09
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTAATATATTTCTAAT
Found at i:103883 original size:20 final size:20
Alignment explanation
Indices: 103855--103892 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
103845 ATTTCTATTA
*
103855 TTAATATTAACAATTTAAAT
1 TTAAAATTAACAATTTAAAT
*
103875 TTAAAATTATCAATTTAA
1 TTAAAATTAACAATTTAA
103893 GGACATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAATTAACAATTTAAAT
Found at i:104179 original size:17 final size:18
Alignment explanation
Indices: 104157--104190 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
104147 AATACAAATT
*
104157 ATTATTATTTA-ATTTAA
1 ATTATTAATTATATTTAA
104174 ATTATTAATTATATTTA
1 ATTATTAATTATATTTA
104191 TTAATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTATTAATTATATTTAA
Found at i:104256 original size:13 final size:13
Alignment explanation
Indices: 104238--104262 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104228 AGGATTTATT
104238 ATAAAATTATTAG
1 ATAAAATTATTAG
104251 ATAAAATTATTA
1 ATAAAATTATTA
104263 ATATTTTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
ATAAAATTATTAG
Found at i:104981 original size:182 final size:179
Alignment explanation
Indices: 104479--105004 Score: 562
Period size: 182 Copynumber: 2.9 Consensus size: 179
104469 CCATTTTTTA
* * *
104479 GTCATAAAACAATTGTTTCAATTCATACAAGCTTATTC-AGAATAAATTAACACTAATTTATTAA
1 GTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAA
* ** * * *
104543 CATTTGAAAAATTAATAAGAAAGAGATTTAAAAAATAAATTTGTTTGCCAAA-CAAGTTCAAATA
65 TATTTCCAAAA-TAAT-AGTAAGAAATTTAAAAAATAAATTTGTTTACCAAATC-AGTTCAAATA
* * * * * *
104607 GTTATTATTATTTGAACAATTGTCTATTTAAAAAT-GTTATAACCTTTTAATTT
127 ATTATGACTATTTGAACAATTATCTATTT-CAAATCATTATAACCTTTTAATTT
* * *
104660 GTCATAAAACAATTGTTTCAGTTAATACAAGCTTAGAT-GGAATAAAATAATACTAATTTATTAA
1 GTCATAAAACAATTGTTTCAGTTCATACAAGCTTA-TTCGAAATAAAATAATACTAATTTATTAA
* * * * *
104724 TATTTCCTAAAT--TAATAAGAAATTTAAAAAATAAATTTGTTTACTAAATCGGTTAAAATAATT
65 TATTTCCAAAATAATAGTAAGAAATTTAAAAAATAAATTTGTTTACCAAATCAGTTCAAATAATT
* * * * *
104787 ATGGCCATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTTATTTT
130 ATGACTATTTGAACAATTATCTATTTCAAATCATTATAACC-TTTTAATTT
** * *** *
104838 GTTGTAATACAATTGTTTTTTTCTCATACAAGCTTATTCGAAATAAAATAATACTAATTGATTAA
1 GTCATAAAACAATTGTTTCAGT-TCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAA
* *
104903 TATTT-CAAAACTAATAGGTAACAAATTTAAACAATAAATTTGTTTACCAAATCAGTTCAAATAA
65 TATTTCCAAAA-TAATA-GTAAGAAATTTAAAAAATAAATTTGTTTACCAAATCAGTTCAAATAA
* *
104967 TTATGACTATTTGAACAATTATCAATCTCAAATCATTA
128 TTATGACTATTTGAACAATTATCTATTTCAAATCATTA
105005 AAATTTTTGT
Statistics
Matches: 284, Mismatches: 50, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
176 4 0.01
177 67 0.24
178 31 0.11
179 42 0.15
180 1 0.00
181 64 0.23
182 75 0.26
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.39
Consensus pattern (179 bp):
GTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAAT
ATTTCCAAAATAATAGTAAGAAATTTAAAAAATAAATTTGTTTACCAAATCAGTTCAAATAATTA
TGACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTAATTT
Found at i:106014 original size:26 final size:26
Alignment explanation
Indices: 105982--106068 Score: 81
Period size: 25 Copynumber: 3.3 Consensus size: 26
105972 GATAAATAAC
105982 AATATAAATTATTTATATATTTAATA
1 AATATAAATTATTTATATATTTAATA
106008 AATAT-AATTATTTATA-ATTGTAACTA
1 AATATAAATTATTTATATATT-TAA-TA
* * *
106034 ATTATATAATTTATTAATTTATATT-ATA
1 A--ATATAAATTATTTATATAT-TTAATA
106062 AATATAA
1 AATATAA
106069 GTATAATATA
Statistics
Matches: 51, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
24 3 0.06
25 14 0.27
26 14 0.27
28 7 0.14
29 9 0.18
30 3 0.06
31 1 0.02
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (26 bp):
AATATAAATTATTTATATATTTAATA
Found at i:106115 original size:15 final size:16
Alignment explanation
Indices: 106090--106119 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
106080 AATATTTATA
106090 ATTATTTAATAATATT
1 ATTATTTAATAATATT
106106 ATTA-TTAATAATAT
1 ATTATTTAATAATAT
106120 AACTAATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTATTTAATAATATT
Found at i:106148 original size:13 final size:14
Alignment explanation
Indices: 106129--106174 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
106119 TAACTAATTG
106129 AAATTATAT-TATT
1 AAATTATATATATT
*
106142 TAATTATAATATATT
1 AAATTAT-ATATATT
106157 AAATTA-ATATATT
1 AAATTATATATATT
106170 AAATT
1 AAATT
106175 TATTAATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 18 0.62
14 2 0.07
15 9 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAATTATATATATT
Found at i:106161 original size:15 final size:15
Alignment explanation
Indices: 106038--106184 Score: 65
Period size: 16 Copynumber: 9.6 Consensus size: 15
106028 TAACTAATTA
* *
106038 TATAATTTATTAATT
1 TATAATATATTAAAT
* * *
106053 TATATTATAAATATAAG
1 TATAATAT-ATTA-AAT
106070 TATAATATA-TAATATT
1 TATAATATATTAA-A-T
*
106086 TATAAT-TATTTAAT
1 TATAATATATTAAAT
* * *
106100 AATATTATTATTAATAA
1 TATAATA-TATTAA-AT
106117 TATAACTA-ATTGAAAT
1 TATAA-TATATT-AAAT
*
106133 TAT-AT-TATTTAAT
1 TATAATATATTAAAT
106146 TATAATATATTAAA-
1 TATAATATATTAAAT
106160 T-TAATATATTAAATT
1 TATAATATATTAAA-T
106175 TATTAATATA
1 TA-TAATATA
106185 CAATTAATTA
Statistics
Matches: 98, Mismatches: 17, Indels: 32
0.67 0.12 0.22
Matches are distributed among these distances:
13 18 0.18
14 13 0.13
15 20 0.20
16 24 0.24
17 21 0.21
18 2 0.02
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (15 bp):
TATAATATATTAAAT
Found at i:106169 original size:28 final size:30
Alignment explanation
Indices: 106129--106184 Score: 73
Period size: 28 Copynumber: 1.9 Consensus size: 30
106119 TAACTAATTG
*
106129 AAATTATATTATTTAA-TTA-TAATATATT
1 AAATTATATTATTAAATTTATTAATATATT
106157 AAATTA-ATATATTAAATTTATTAATATA
1 AAATTATAT-TATTAAATTTATTAATATA
106185 CAATTAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 2 0.08
28 12 0.50
29 3 0.12
30 7 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (30 bp):
AAATTATATTATTAAATTTATTAATATATT
Found at i:106176 original size:89 final size:91
Alignment explanation
Indices: 105973--106177 Score: 221
Period size: 89 Copynumber: 2.3 Consensus size: 91
105963 GTTAAAGGTG
* * *
105973 ATAAATAACAATATA-AATTATTTATATATTTAATAAATATAATTATTTATAATTGTAACTAATT
1 ATAAAT-ATAATATATAA-TATTTATATATTTAATAAATATAATTATTAATAATTATAACTAATT
*
106037 ATATAATTTATTAATTTATATTATAAAT
64 AGATAATTTATTAATTTATATTATAAAT
* *
106065 ATAAGTATAATATATAATATTTATAATTATTTAAT-AATATTATTATTAATAA-TATAACTAATT
1 ATAAATATAATATATAATATTTAT-A-TATTTAATAAATATAATTATTAATAATTATAACTAATT
106128 -GA-AATTATATT-ATTTA-ATTATAATAT
64 AGATAATT-TATTAATTTATATTATAA-AT
106154 ATTAAAT-TAATATATTAA-ATTTAT
1 A-TAAATATAATATA-TAATATTTAT
106178 TAATATACAA
Statistics
Matches: 99, Mismatches: 7, Indels: 17
0.80 0.06 0.14
Matches are distributed among these distances:
88 7 0.07
89 25 0.25
90 12 0.12
91 24 0.24
92 23 0.23
93 8 0.08
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (91 bp):
ATAAATATAATATATAATATTTATATATTTAATAAATATAATTATTAATAATTATAACTAATTAG
ATAATTTATTAATTTATATTATAAAT
Found at i:106602 original size:28 final size:24
Alignment explanation
Indices: 106571--106641 Score: 72
Period size: 24 Copynumber: 2.8 Consensus size: 24
106561 TAATAAATAG
106571 TAAAATAATATTATATTATTCCA-TTA
1 TAAAATAATATTATA-TATT--ATTTA
*
106597 TATAAATATATATTATATATTATTTG
1 TA-AAATA-ATATTATATATTATTTA
*
106623 TAAAATAATATTAAATATT
1 TAAAATAATATTATATATT
106642 TATTGTTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
24 11 0.28
25 6 0.15
26 6 0.15
27 9 0.22
28 8 0.20
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (24 bp):
TAAAATAATATTATATATTATTTA
Found at i:106923 original size:23 final size:23
Alignment explanation
Indices: 106900--106945 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
106890 TTAAAAATAT
106900 TAATAAATAATAATAATTATTATTA
1 TAATAAAT--TAATAATTATTATTA
*
106925 TAATAAATTAGTAATTATTAT
1 TAATAAATTAATAATTATTAT
106946 AATTTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
25 8 0.40
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
TAATAAATTAATAATTATTATTA
Found at i:107066 original size:11 final size:12
Alignment explanation
Indices: 107029--107068 Score: 55
Period size: 11 Copynumber: 3.2 Consensus size: 12
107019 ATTTAGTAAT
107029 ATATTAAATATA
1 ATATTAAATATA
107041 ATATTAATTATATA
1 ATATTAA--ATATA
107055 AT-TTAAATATA
1 ATATTAAATATA
107066 ATA
1 ATA
107069 CTATAATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 7 0.28
12 7 0.28
13 4 0.16
14 7 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
ATATTAAATATA
Found at i:107194 original size:18 final size:17
Alignment explanation
Indices: 107173--107274 Score: 63
Period size: 20 Copynumber: 5.8 Consensus size: 17
107163 ATTTATCAAT
107173 TATATTAATATATTATA
1 TATATTAATATATTATA
107190 CTATA-TAATTATATAATATTA
1 -TATATTAA-TATAT--TA-TA
*
107211 TATATTATTAT-TTATA
1 TATATTAATATATTATA
107227 TAATATTAATAACTATTATA
1 T-ATATTAAT-A-TATTATA
107247 TAT-TTAAGT-TATT-TA
1 TATATTAA-TATATTATA
*
107262 TA-ATTATTATATT
1 TATATTAATATATT
107275 TATTTTAATT
Statistics
Matches: 69, Mismatches: 3, Indels: 27
0.70 0.03 0.27
Matches are distributed among these distances:
14 1 0.01
15 11 0.16
16 7 0.10
17 12 0.17
18 14 0.20
19 5 0.07
20 15 0.22
21 4 0.06
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (17 bp):
TATATTAATATATTATA
Found at i:107196 original size:20 final size:19
Alignment explanation
Indices: 107173--107249 Score: 72
Period size: 20 Copynumber: 4.1 Consensus size: 19
107163 ATTTATCAAT
107173 TATATTAATATATTATACTA
1 TATATTAATATATTATA-TA
*
107193 TATAATT-ATATAATAT-TA
1 TAT-ATTAATATATTATATA
*
107211 TATATTATTAT-TTATATA
1 TATATTAATATATTATATA
107229 -ATATTAATAACTATTATATA
1 TATATTAAT-A-TATTATATA
107249 T
1 T
107250 TTAAGTTATT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
17 13 0.28
18 11 0.24
19 1 0.02
20 18 0.39
21 3 0.07
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (19 bp):
TATATTAATATATTATATA
Found at i:107278 original size:28 final size:27
Alignment explanation
Indices: 107213--107297 Score: 86
Period size: 26 Copynumber: 3.1 Consensus size: 27
107203 TAATATTATA
* * *
107213 TATTATTATTTATATAA-TATTAATAAC
1 TATTA-TATTTATTTAATTATTTATAAT
107240 TATTATA--TATTTAAGTTATTTATAAT
1 TATTATATTTATTTAA-TTATTTATAAT
*
107266 TATTATATTTATTTTAATTATTTATTAT
1 TATTATATTTA-TTTAATTATTTATAAT
107294 TATT
1 TATT
107298 TTAATGATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
24 6 0.12
26 17 0.35
27 5 0.10
28 16 0.33
29 5 0.10
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (27 bp):
TATTATATTTATTTAATTATTTATAAT
Found at i:107296 original size:19 final size:19
Alignment explanation
Indices: 107255--107307 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
107245 TATATTTAAG
107255 TTATTTATAATTA-TTATAT
1 TTATTT-TAATTATTTATAT
107274 TTATTTTAATTATTTAT-T
1 TTATTTTAATTATTTATAT
*
107292 ATTATTTTAATGATTT
1 -TTATTTTAATTATTT
107308 GAAATAAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 7 0.23
19 24 0.77
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TTATTTTAATTATTTATAT
Found at i:107307 original size:28 final size:29
Alignment explanation
Indices: 107249--107307 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
107239 CTATTATATA
* *
107249 TTTAAGTTATTTATAATTATTATATTTAT
1 TTTAAGTTATTTATAATTATTATAATGAT
* *
107278 TTTAA-TTATTTATTATTATTTTAATGAT
1 TTTAAGTTATTTATAATTATTATAATGAT
107306 TT
1 TT
107308 GAAATAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.64
Consensus pattern (29 bp):
TTTAAGTTATTTATAATTATTATAATGAT
Found at i:108172 original size:16 final size:16
Alignment explanation
Indices: 108148--108197 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
108138 TAAGTATATT
108148 ATATAATTAATTAA-TA
1 ATATAATTAA-TAACTA
*
108164 ATTTAATTAATAACTA
1 ATATAATTAATAACTA
*
108180 ATATAATT-ATAAATA
1 ATATAATTAATAACTA
108195 ATA
1 ATA
108198 CTATATAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 12 0.40
16 18 0.60
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAATTAATAACTA
Found at i:108205 original size:20 final size:22
Alignment explanation
Indices: 108161--108209 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 22
108151 TAATTAATTA
*
108161 ATAATT-TAATTAATAACTAAT
1 ATAATTATAAATAATAACTAAT
108182 ATAATTATAAATAAT-ACT-AT
1 ATAATTATAAATAATAACTAAT
108202 ATAATTAT
1 ATAATTAT
108210 TTATATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 10 0.38
21 9 0.35
22 7 0.27
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (22 bp):
ATAATTATAAATAATAACTAAT
Found at i:108398 original size:4 final size:4
Alignment explanation
Indices: 108391--108428 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
108381 TAAAGAGATC
*
108391 TAAT TAAT T-AT TAAT TAAT TAAT TAAT TTA- TAAT TAAT
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT
108429 AATGATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 5 0.17
4 25 0.83
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (4 bp):
TAAT
Found at i:108411 original size:15 final size:15
Alignment explanation
Indices: 108391--108428 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
108381 TAAAGAGATC
108391 TAATTAATT-ATTAA
1 TAATTAATTAATTAA
*
108405 TTAATTAATTAATTTA
1 -TAATTAATTAATTAA
108421 TAATTAAT
1 TAATTAAT
108429 AATGATATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TAATTAATTAATTAA
Found at i:108415 original size:19 final size:18
Alignment explanation
Indices: 108391--108446 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 18
108381 TAAAGAGATC
108391 TAATTAATTATTAATTAA
1 TAATTAATTATTAATTAA
108409 TTAATTAATT-TATAATTAA
1 -TAATTAATTAT-TAATTAA
* *
108428 TAATGATATTATTATTTAA
1 TAATTA-ATTATTAATTAA
108447 ATTGATAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 6 0.19
19 25 0.78
20 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
TAATTAATTATTAATTAA
Found at i:108704 original size:5 final size:5
Alignment explanation
Indices: 108686--108733 Score: 69
Period size: 5 Copynumber: 9.2 Consensus size: 5
108676 TAGATTATCA
*
108686 ATAAT ATAATT ATAAT ATATT ATAAT ATAAT ATAAT ATAAAT ATAAT A
1 ATAAT ATAA-T ATAAT ATAAT ATAAT ATAAT ATAAT AT-AAT ATAAT A
108734 CAAGGTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
5 29 0.74
6 10 0.26
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:108956 original size:24 final size:24
Alignment explanation
Indices: 108928--108978 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
108918 AACTTGTTAA
*
108928 AATAATTAACATTATTAATTAATT
1 AATAATTAACATTATTAACTAATT
* *
108952 AATAATTAATATTATTAACTGATT
1 AATAATTAACATTATTAACTAATT
108976 AAT
1 AAT
108979 TATGATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
AATAATTAACATTATTAACTAATT
Found at i:109329 original size:14 final size:14
Alignment explanation
Indices: 109310--109337 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
109300 TAAATAATTA
109310 ATTATATAATATTT
1 ATTATATAATATTT
109324 ATTATATAATATTT
1 ATTATATAATATTT
109338 TAATAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTATATAATATTT
Found at i:109917 original size:31 final size:31
Alignment explanation
Indices: 109882--109948 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
109872 ATATAATAAC
* *
109882 ATTATAATAATATTA-TATATTATTACTATTT
1 ATTATAATAATAATATTATATTATAACTA-TT
*
109913 ATTATAATAATAATATTTTATTATAACTATT
1 ATTATAATAATAATATTATATTATAACTATT
109944 ATTAT
1 ATTAT
109949 TTTTGTATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 21 0.66
32 11 0.34
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (31 bp):
ATTATAATAATAATATTATATTATAACTATT
Found at i:109949 original size:34 final size:34
Alignment explanation
Indices: 109885--109948 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
109875 TAATAACATT
*
109885 ATAATAATATTATATATTATTACTATTTATTATA
1 ATAATAATATTATATATTATAACTATTTATTATA
109919 ATAATAATATT-T-TATTATAACTA-TTATTAT
1 ATAATAATATTATATATTATAACTATTTATTAT
109949 TTTTGTATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 7 0.24
32 10 0.34
33 1 0.03
34 11 0.38
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (34 bp):
ATAATAATATTATATATTATAACTATTTATTATA
Found at i:109958 original size:39 final size:38
Alignment explanation
Indices: 109892--109986 Score: 113
Period size: 39 Copynumber: 2.4 Consensus size: 38
109882 ATTATAATAA
* *
109892 TATTATATATTATTACTATTTATTATAATAATAA-TATTT
1 TATTATA-ACTATTATTATTTATTATAATAATAATTA-TT
*
109931 TATTATAACTATTATTATTTTTGTATAATAATAATTATT
1 TATTATAACTATTATTATTTAT-TATAATAATAATTATT
109970 TA-TATAAACTATTATTA
1 TATTAT-AACTATTATTA
109987 AATTGTTATT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
38 15 0.30
39 33 0.66
40 2 0.04
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (38 bp):
TATTATAACTATTATTATTTATTATAATAATAATTATT
Found at i:110106 original size:12 final size:12
Alignment explanation
Indices: 110089--110165 Score: 52
Period size: 12 Copynumber: 6.2 Consensus size: 12
110079 TCATAATAAG
110089 TAATTAAATTAT
1 TAATTAAATTAT
110101 TAATTAATAATTAT
1 TAATT-A-AATTAT
*
110115 TATTATAAATATAT
1 TAAT-TAAAT-TAT
*
110129 T-ATTCAATATAT
1 TAATTAAAT-TAT
110141 TAA-TAAATTAT
1 TAATTAAATTAT
*
110152 ATACTT-AATTAT
1 -TAATTAAATTAT
110164 TA
1 TA
110166 TTTAGTAATT
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
11 5 0.09
12 26 0.49
13 7 0.13
14 14 0.26
15 1 0.02
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATTAAATTAT
Found at i:110150 original size:20 final size:17
Alignment explanation
Indices: 110093--110151 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 17
110083 AATAAGTAAT
110093 TAAATTATTA--ATTAA
1 TAAATTATTATTATTAA
*
110108 T-AATTATTATTATAAA
1 TAAATTATTATTATTAA
*
110124 TATATTATTCAATATATTAA
1 TAAATTATT--AT-TATTAA
110144 TAAATTAT
1 TAAATTAT
110152 ATACTTAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
14 8 0.24
15 1 0.03
16 5 0.15
17 6 0.18
19 2 0.06
20 12 0.35
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TAAATTATTATTATTAA
Found at i:110164 original size:23 final size:23
Alignment explanation
Indices: 110113--110165 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
110103 ATTAATAATT
110113 ATTATT-ATAAATATATTATTCA
1 ATTATTAATAAATATATTATTCA
110135 ATATATTAATAAAT-TATATACTT-A
1 AT-TATTAATAAATATAT-TA-TTCA
110159 ATTATTA
1 ATTATTA
110166 TTTAGTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
22 2 0.07
23 12 0.44
24 11 0.41
25 2 0.07
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (23 bp):
ATTATTAATAAATATATTATTCA
Found at i:110294 original size:6 final size:6
Alignment explanation
Indices: 110283--110414 Score: 57
Period size: 6 Copynumber: 22.2 Consensus size: 6
110273 ACTCATAATT
* * *
110283 TTATAA TTATAA TAAT-A TTA-AA TTATTA TTATAA CTTATAA -TAAAA
1 TTATAA TTATAA TTATAA TTATAA TTATAA TTATAA -TTATAA TTATAA
* * *
110329 TAACTTAA TTACT-A TTAATAA TTA-AA TTAAAA TTA-AA ATATAA TTAT-A
1 TTA--TAA TTA-TAA TT-ATAA TTATAA TTATAA TTATAA TTATAA TTATAA
* *
110377 TCAAATAA TTTTAA TTATAA CTTATAA -T-TAA TTATAA T
1 T--TATAA TTATAA TTATAA -TTATAA TTATAA TTATAA T
110415 ATTAATAGTT
Statistics
Matches: 95, Mismatches: 15, Indels: 32
0.67 0.11 0.23
Matches are distributed among these distances:
4 3 0.03
5 24 0.25
6 43 0.45
7 19 0.20
8 6 0.06
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (6 bp):
TTATAA
Found at i:110339 original size:29 final size:29
Alignment explanation
Indices: 110278--110339 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
110268 AATAAACTCA
*
110278 TAATT-TTATAATTATAATAATATTAAAT
1 TAATTATTATAATTATAATAATAATAAAT
*
110306 T-ATTATTATAACTTATAATAA-AATAACT
1 TAATTATTATAA-TTATAATAATAATAAAT
110334 TAATTA
1 TAATTA
110340 CTATTAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 3 0.10
28 13 0.45
29 13 0.45
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
TAATTATTATAATTATAATAATAATAAAT
Found at i:110534 original size:18 final size:18
Alignment explanation
Indices: 110511--110545 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
110501 GTCCAATTAA
110511 ATTATATAATAAATAATT
1 ATTATATAATAAATAATT
*
110529 ATTATATAATATATAAT
1 ATTATATAATAAATAAT
110546 ATACAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTATATAATAAATAATT
Found at i:110546 original size:25 final size:25
Alignment explanation
Indices: 110513--110578 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
110503 CCAATTAAAT
*
110513 TATATAATAAATAATTATTATATA-A
1 TATATAATAAATAATTATAAT-TACA
* *
110538 TATATAATATACAATTATAATTACA
1 TATATAATAAATAATTATAATTACA
*
110563 TATTATAATAATTAAT
1 TA-TATAATAAATAAT
110579 ATGATTCATA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
24 2 0.06
25 21 0.64
26 10 0.30
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (25 bp):
TATATAATAAATAATTATAATTACA
Found at i:110558 original size:13 final size:14
Alignment explanation
Indices: 110526--110572 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
110516 ATAATAAATA
*
110526 ATTATTATATA-AT
1 ATTATAATATACAT
110539 A-TATAATATACA-
1 ATTATAATATACAT
110551 ATTATAAT-TACAT
1 ATTATAATATACAT
110564 ATTATAATA
1 ATTATAATA
110573 ATTAATATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
12 13 0.45
13 16 0.55
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTATAATATACAT
Found at i:110603 original size:14 final size:15
Alignment explanation
Indices: 110511--110627 Score: 59
Period size: 14 Copynumber: 7.5 Consensus size: 15
110501 GTCCAATTAA
110511 ATTATATAATAAATAATT
1 ATTAT-TAAT-AATAA-T
110529 ATTATATAATATATAAT
1 ATTAT-TAATA-ATAAT
*
110546 ATACAATT-ATAATTACAT
1 AT--TATTAATAA-TA-AT
110564 ATTA-TAATAATTAAT
1 ATTATTAATAA-TAAT
* *
110579 ATGATTCATAA-AAT
1 ATTATTAATAATAAT
110593 ATTATTAATAAT-AT
1 ATTATTAATAATAAT
110607 -TTAATT-ATAATAAT
1 ATT-ATTAATAATAAT
110621 -TTATTAA
1 ATTATTAA
110628 ATTATTACAT
Statistics
Matches: 82, Mismatches: 6, Indels: 26
0.72 0.05 0.23
Matches are distributed among these distances:
13 10 0.12
14 22 0.27
15 6 0.07
16 14 0.17
17 9 0.11
18 19 0.23
19 2 0.02
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (15 bp):
ATTATTAATAATAAT
Found at i:110686 original size:18 final size:19
Alignment explanation
Indices: 110663--110698 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
110653 AATTATTATA
110663 ATAAATAGTAA-TAATATT
1 ATAAATAGTAACTAATATT
*
110681 ATAAATATTAACTAATAT
1 ATAAATAGTAACTAATAT
110699 ATGACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
ATAAATAGTAACTAATATT
Found at i:111447 original size:22 final size:21
Alignment explanation
Indices: 111406--111448 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
111396 AATTTATTAG
**
111406 TAATTTATTAATAAGTAAAAT
1 TAATTTATTAATAACAAAAAT
111427 TAATATTATTAATAACAAAAAT
1 TAAT-TTATTAATAACAAAAAT
111449 ATTTGTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TAATTTATTAATAACAAAAAT
Found at i:111975 original size:14 final size:14
Alignment explanation
Indices: 111956--111985 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
111946 GACTATTTCA
*
111956 ATTAATAAATATTT
1 ATTAATAAATAATT
111970 ATTAATAAATAATT
1 ATTAATAAATAATT
111984 AT
1 AT
111986 CTATTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTAATAAATAATT
Found at i:112035 original size:24 final size:22
Alignment explanation
Indices: 111978--112036 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 22
111968 TTATTAATAA
*
111978 ATAATTATCTATTTTAAATCATT
1 ATAATT-TATATTTTAAATCATT
112001 ATTAATATTATATTTTAAATCATATT
1 A-TAAT-TTATATTTTAAATC--ATT
112027 ATAATTTATA
1 ATAATTTATA
112037 ATACTATTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
23 1 0.03
24 21 0.68
25 5 0.16
26 4 0.13
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (22 bp):
ATAATTTATATTTTAAATCATT
Found at i:112267 original size:18 final size:18
Alignment explanation
Indices: 112256--112323 Score: 75
Period size: 18 Copynumber: 3.6 Consensus size: 18
112246 ATAATTTATA
112256 AATAAATTATAATAATAT
1 AATAAATTATAATAATAT
112274 AATAAATTATATAAATAATAT
1 AATAAA-T-TAT-AATAATAT
112295 AAT-AATTATAATAAATAT
1 AATAAATTATAAT-AATAT
*
112313 ATTATAATTAT
1 AATA-AATTAT
112324 TTAATGTAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
17 3 0.07
18 16 0.37
19 2 0.05
20 11 0.26
21 11 0.26
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AATAAATTATAATAATAT
Found at i:112270 original size:21 final size:20
Alignment explanation
Indices: 112246--112313 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 20
112236 ATTATAATTC
112246 ATAATTTATAAATAAATTATA
1 ATAA-TTATAAATAAATTATA
112267 ATAA-TAT-AATAAATTAT-
1 ATAATTATAAATAAATTATA
*
112284 ATAAATAATATAAT-AATTATA
1 AT-AATTATA-AATAAATTATA
*
112305 ATAAATATA
1 ATAATTATA
112314 TTATAATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
17 2 0.05
18 12 0.31
19 5 0.13
20 11 0.28
21 9 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAATTATAAATAAATTATA
Found at i:112372 original size:9 final size:9
Alignment explanation
Indices: 112260--112373 Score: 54
Period size: 9 Copynumber: 12.0 Consensus size: 9
112250 TTTATAAATA
*
112260 AATTATAAT
1 AATTATATT
*
112269 AA-TATAATA
1 AATTAT-ATT
*
112278 AATTATATA
1 AATTATATT
*
112287 AATAATATAAT
1 AAT--TATATT
*
112298 AATTATAAT
1 AATTATATT
*
112307 AAATATATTAT
1 AATTATA-T-T
112318 AATTAT-TT
1 AATTATATT
112326 AATGTAATTATT
1 AAT-T-A-TATT
112338 AATT-TATT
1 AATTATATT
*
112346 AATAATATT
1 AATTATATT
*
112355 TATTAATATT
1 AATT-ATATT
112365 AATTATATT
1 AATTATATT
112374 TTATTTGTTA
Statistics
Matches: 82, Mismatches: 11, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
8 14 0.17
9 36 0.44
10 12 0.15
11 15 0.18
12 5 0.06
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (9 bp):
AATTATATT
Found at i:112468 original size:21 final size:21
Alignment explanation
Indices: 112439--112495 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
112429 ATAAATCTAG
*
112439 TAATATAAATAATT-ATATTAT
1 TAATATAAAT-ATTAATAATAT
*
112460 TAATTTAAATATTAATAATAT
1 TAATATAAATATTAATAATAT
*
112481 TAATAATTAATATTA
1 TAAT-ATAAATATTA
112496 TTATTTGATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 3 0.10
21 19 0.63
22 8 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TAATATAAATATTAATAATAT
Found at i:112473 original size:15 final size:16
Alignment explanation
Indices: 112453--112498 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
112443 ATAAATAATT
*
112453 ATATTATTAAT-TTAA
1 ATATTAATAATATTAA
112468 ATATTAATAATATT-A
1 ATATTAATAATATTAA
*
112483 ATAATTAATATTATTA
1 AT-ATTAATAATATTA
112499 TTTGATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTAATAATATTAA
Found at i:112480 original size:24 final size:22
Alignment explanation
Indices: 112448--112495 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 22
112438 GTAATATAAA
* *
112448 TAATTATATTATTAATTTAAATAT
1 TAATAATATTAATAA-TT-AATAT
112472 TAATAATATTAATAATTAATAT
1 TAATAATATTAATAATTAATAT
112494 TA
1 TA
112496 TTATTTGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 7 0.32
23 2 0.09
24 13 0.59
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TAATAATATTAATAATTAATAT
Found at i:112891 original size:18 final size:18
Alignment explanation
Indices: 112870--112905 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
112860 ATTACTAGTT
* *
112870 ATACTTATATTATTAATA
1 ATACATATATTATAAATA
112888 ATACATATATTATAAATA
1 ATACATATATTATAAATA
112906 TTATATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (18 bp):
ATACATATATTATAAATA
Found at i:113675 original size:21 final size:23
Alignment explanation
Indices: 113641--113686 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
113631 GATAATATCA
113641 ATTTAATATTCAAATATT-AATT
1 ATTTAATATTCAAATATTAAATT
113663 ATTTAAT-TTCAAATATTAAATT
1 ATTTAATATTCAAATATTAAATT
113685 AT
1 AT
113687 AAATAATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (23 bp):
ATTTAATATTCAAATATTAAATT
Found at i:113710 original size:19 final size:20
Alignment explanation
Indices: 113679--113717 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
113669 TTTCAAATAT
113679 TAAATTATAAATAA-TTGAA
1 TAAATTATAAATAACTTGAA
113698 TAAA-TATATAATAACTTGAA
1 TAAATTATA-AATAACTTGAA
113718 GCAAATATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (20 bp):
TAAATTATAAATAACTTGAA
Found at i:113772 original size:19 final size:19
Alignment explanation
Indices: 113750--113807 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
113740 ATAACATAAC
113750 TTAATATTAATATAATTAT
1 TTAATATTAATATAATTAT
*
113769 TTAATGTT-A-ATAATTAT
1 TTAATATTAATATAATTAT
113786 ATTAATATTAATA-AATTAT
1 -TTAATATTAATATAATTAT
113805 TTA
1 TTA
113808 TTAATTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
17 8 0.24
18 11 0.32
19 14 0.41
20 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TTAATATTAATATAATTAT
Found at i:113817 original size:21 final size:18
Alignment explanation
Indices: 113750--113818 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 18
113740 ATAACATAAC
113750 TTAATATTAATATAATTAT-
1 TTAATATT-A-ATAATTATA
*
113769 TTAATGTTAATAATTATA
1 TTAATATTAATAATTATA
113787 TTAATATTAATAAATTATTTA
1 TTAATATTAAT-AATTA--TA
*
113808 TTAATTTTAAT
1 TTAATATTAAT
113819 TTTATAATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
17 8 0.19
18 11 0.26
19 12 0.28
21 12 0.28
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (18 bp):
TTAATATTAATAATTATA
Found at i:113831 original size:21 final size:20
Alignment explanation
Indices: 113807--113858 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
113797 TAAATTATTT
*
113807 ATTAATTTTAATTTTATAATA
1 ATTAATTTT-ATATTATAATA
**
113828 ATTATATACTATATTATAATA
1 ATTA-ATTTTATATTATAATA
113849 ATATAATTTT
1 AT-TAATTTT
113859 CCTCAACTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTAATTTTATATTATAATA
Found at i:114231 original size:13 final size:13
Alignment explanation
Indices: 114213--114237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
114203 ATACTTTATT
114213 AATAATTAGATTA
1 AATAATTAGATTA
114226 AATAATTAGATT
1 AATAATTAGATT
114238 TATTTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:114340 original size:16 final size:18
Alignment explanation
Indices: 114309--114342 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
114299 TTTTTAATTT
114309 AAACAAATTAATATATTA
1 AAACAAATTAATATATTA
114327 AAACAAA-T-ATATATTA
1 AAACAAATTAATATATTA
114343 GTTTTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (18 bp):
AAACAAATTAATATATTA
Found at i:114364 original size:13 final size:14
Alignment explanation
Indices: 114345--114383 Score: 62
Period size: 13 Copynumber: 2.8 Consensus size: 14
114335 ATATATTAGT
114345 TTTAATATTTAAAA
1 TTTAATATTTAAAA
114359 -TTAATATTTAAAA
1 TTTAATATTTAAAA
114372 TTTAAATATTTA
1 TTT-AATATTTA
114384 TATTATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 13 0.57
14 2 0.09
15 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TTTAATATTTAAAA
Found at i:114959 original size:45 final size:46
Alignment explanation
Indices: 114910--115011 Score: 109
Period size: 45 Copynumber: 2.2 Consensus size: 46
114900 ATTATATAAG
*
114910 AATAATAATTTTAACAAAAATATTATAATTA-TTA-AAATTATCAAT
1 AATAATAATTTTAA-AAAAATAATATAATTATTTATAAATTATCAAT
* * * * *
114955 AATAATTTATTTTAATAAATTAATATAATTATTTATTAATTATCTAT
1 AATAA-TAATTTTAAAAAAATAATATAATTATTTATAAATTATCAAT
115002 AATTAATAAT
1 AA-TAATAAT
115012 AATTTATTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
45 18 0.39
46 11 0.24
47 14 0.30
48 3 0.07
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (46 bp):
AATAATAATTTTAAAAAAATAATATAATTATTTATAAATTATCAAT
Found at i:114989 original size:21 final size:20
Alignment explanation
Indices: 114933--115026 Score: 57
Period size: 21 Copynumber: 4.5 Consensus size: 20
114923 ACAAAAATAT
* * *
114933 TATAATTATTAAAATTATCAA
1 TATAATTATT-TAATAATTAA
114954 TAATAATTTATTTTAATAAATTAA
1 T-ATAA-TTA-TTTAAT-AATTAA
* *
114978 TATAATTATTTATTAATTATC
1 TATAATTATTTAATAATTA-A
* *
114999 TATAATTA-ATAATAATTTA
1 TATAATTATTTAATAATTAA
115018 T-TAATTATT
1 TATAATTATT
115027 ATTATTATTA
Statistics
Matches: 57, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
18 6 0.11
19 1 0.02
20 12 0.21
21 14 0.25
22 7 0.12
23 10 0.18
24 7 0.12
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TATAATTATTTAATAATTAA
Found at i:115017 original size:28 final size:27
Alignment explanation
Indices: 114952--115033 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 27
114942 TAAAATTATC
*
114952 AATAATAATTTATT--TTAATA-AATT
1 AATAATAATTTATTAATTATTATAATT
*
114976 AATATAATTATTTATTAATTATCTATAATT
1 -A-ATAATAATTTATTAATTAT-TATAATT
*
115006 AATAATAATTTATTAATTATTATTATT
1 AATAATAATTTATTAATTATTATAATT
115033 A
1 A
115034 TTATGTTTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
25 1 0.02
26 12 0.25
27 7 0.15
28 21 0.44
29 3 0.06
30 4 0.08
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (27 bp):
AATAATAATTTATTAATTATTATAATT
Found at i:115035 original size:9 final size:10
Alignment explanation
Indices: 114980--115037 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
114970 TAAATTAATA
114980 TAATTATTTAT
1 TAATTA-TTAT
114991 TAATTATCTA-
1 TAATTAT-TAT
* *
115001 TAATTAATAA
1 TAATTATTAT
115011 TAA-T-TTAT
1 TAATTATTAT
115019 TAATTATTAT
1 TAATTATTAT
115029 T-ATTATTAT
1 TAATTATTAT
115038 GTTTTAATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
8 5 0.12
9 12 0.30
10 15 0.38
11 8 0.20
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (10 bp):
TAATTATTAT
Found at i:116433 original size:181 final size:179
Alignment explanation
Indices: 115962--116472 Score: 563
Period size: 177 Copynumber: 2.9 Consensus size: 179
115952 AACTATACAT
* * * * * *
115962 TTGTTCAAATAGTCATAACTAATTAAACGAGTTTGATAAATAAATTTATTTTTTAAATTTCTTAG
1 TTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTAATTTTTTAAA-TT-TT-G
* * * *
116027 -TTATTAACTTTTGAAAGATTAATAAATTAGTATTATTTTATTCT-G--AAGCTTGTATGATA-A
63 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGA-ACT
* ** *
116087 AAAACAATTGTTATATAACCAAACAAAA-GTAATATTGATTTCAAATAGATAA
127 AAAACAATTGTTATATGATAAAACAAAAGGTAATAATGATTTCAAATAGATAA
* * * * * * * *
116139 TTGTTGAAATAGCCATAATTATTTGAACTAATTCGGTAAACAAAATCATTTTTTAAA--TTACTT
1 TTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTAATTTTTTAAATTTTGCTT
* * * *
116202 ATTAATTTTTGGAATATTAATAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAACTAAAA
66 ATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAACTAAAA
* * *
116267 CAATTGTTCTATGATAAAACAAAAGGTCATAATGATTTTAAATAGATAA
131 CAATTGTTATATGATAAAACAAAAGGTAATAATGATTTCAAATAGATAA
* * *
116316 TTGTTCAAATAGTCATAACTATTTGAATTTGTTCAATAAACAAATTAATTTTTTTAAATTGTTGC
1 TTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTAA-TTTTTTAAATT-TTGC
* * *
116381 TTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTGGATAAGCTTTTATGAACTGA
64 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAACTAA
* *
116446 AACAATTGTTTTTTG-TCAAAACAAAAG
129 AACAATTGTTATATGAT-AAAACAAAAG
116473 ATTAAGTTAT
Statistics
Matches: 275, Mismatches: 48, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
173 40 0.15
175 1 0.00
176 36 0.13
177 104 0.38
178 9 0.03
180 1 0.00
181 84 0.31
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (179 bp):
TTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTAATTTTTTAAATTTTGCTT
ATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAACTAAAA
CAATTGTTATATGATAAAACAAAAGGTAATAATGATTTCAAATAGATAA
Found at i:116734 original size:23 final size:23
Alignment explanation
Indices: 116702--116768 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 23
116692 CTTTTAAATT
*
116702 ATAAATAATTTAAT-ATAATTTAA
1 ATAAA-AAATTAATAATAATTTAA
116725 ATAAAAAATTAATAATAATTTAAA
1 ATAAAAAATTAATAATAATTT-AA
**
116749 ATAATTAATTAATTAATAAT
1 ATAAAAAATTAA-TAATAAT
116769 AGATATTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 7 0.18
23 12 0.32
24 12 0.32
25 7 0.18
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
ATAAAAAATTAATAATAATTTAA
Found at i:116859 original size:24 final size:24
Alignment explanation
Indices: 116832--116902 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 24
116822 TAATAATAAA
*
116832 ATATAATCTAAATAATATTTAATT
1 ATATAATTTAAATAATATTTAATT
*
116856 ATATAAATATTAAAT-ATAATTAAATT
1 ATAT-AAT-TTAAATAAT-ATTTAATT
116882 AT-TAATTTCAAATAATATTTA
1 ATATAATTT-AAATAATATTTA
116903 TAATTTAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
23 2 0.05
24 15 0.38
25 8 0.21
26 14 0.36
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (24 bp):
ATATAATTTAAATAATATTTAATT
Found at i:116907 original size:26 final size:27
Alignment explanation
Indices: 116840--116907 Score: 67
Period size: 26 Copynumber: 2.6 Consensus size: 27
116830 AAATATAATC
116840 TAAATAATATT-TAATTATATAAATAT
1 TAAATAATATTATAATTATATAAATAT
116866 TAAAT-ATAATTA-AATTAT-T-AAT-T
1 TAAATAAT-ATTATAATTATATAAATAT
116889 TCAAATAATATTTATAATT
1 T-AAATAATA-TTATAATT
116908 TAAACTTATA
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
23 2 0.06
24 8 0.22
25 8 0.22
26 18 0.50
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (27 bp):
TAAATAATATTATAATTATATAAATAT
Found at i:117359 original size:18 final size:18
Alignment explanation
Indices: 117317--117360 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
117307 AATTATCAAA
117317 TAAATATTATTAATCTAT
1 TAAATATTATTAATCTAT
* *
117335 TTAATATTTTTAAT-TAT
1 TAAATATTATTAATCTAT
117352 TAATATATT
1 TAA-ATATT
117361 CTAATACATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TAAATATTATTAATCTAT
Found at i:117771 original size:13 final size:14
Alignment explanation
Indices: 117741--117773 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
117731 AAAATATTAT
117741 TAATATTATCTAATA
1 TAAT-TTATCTAATA
117756 TAATTTATCT-ATA
1 TAATTTATCTAATA
117769 TAATT
1 TAATT
117774 ATAAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 6 0.33
15 4 0.22
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATTTATCTAATA
Found at i:118020 original size:7 final size:7
Alignment explanation
Indices: 118008--118050 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
117998 TTATATATTC
*
118008 TATTAAT
1 TATTAAA
118015 TATT-AA
1 TATTAAA
118021 TATTAAA
1 TATTAAA
118028 TATTAAA
1 TATTAAA
118035 TATTAACA
1 TATTAA-A
118043 TA-TAAA
1 TATTAAA
118049 TA
1 TA
118051 ATTTGTTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
6 8 0.24
7 22 0.67
8 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (7 bp):
TATTAAA
Found at i:118031 original size:20 final size:21
Alignment explanation
Indices: 118008--118050 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
117998 TTATATATTC
* *
118008 TATTAATTATTAATAT-TAAA
1 TATTAAATATTAACATATAAA
118028 TATTAAATATTAACATATAAA
1 TATTAAATATTAACATATAAA
118049 TA
1 TA
118051 ATTTGTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
TATTAAATATTAACATATAAA
Found at i:118123 original size:20 final size:20
Alignment explanation
Indices: 118098--118161 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
118088 TTTAAATATT
118098 ATTATTAT-TATTATTATCAA
1 ATTATTATATATTATTAT-AA
* *
118118 ATTATTCTATATTTTTATAA
1 ATTATTATATATTATTATAA
*
118138 ATTA--ATA-ATTAATATATA
1 ATTATTATATATTATTATA-A
118156 ATTATT
1 ATTATT
118162 TGTAACATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
17 7 0.20
18 7 0.20
20 13 0.37
21 8 0.23
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTATTATATATTATTATAA
Found at i:118649 original size:3 final size:3
Alignment explanation
Indices: 118641--118678 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
118631 CTATTAAAAT
118641 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
118679 TATATATGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:118746 original size:20 final size:20
Alignment explanation
Indices: 118721--118758 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
118711 TTAAAAAAAG
*
118721 AAAAAAAGAGAAAATAGGAA
1 AAAAAAACAGAAAATAGGAA
*
118741 AAAAAAACAGAAAGTAGG
1 AAAAAAACAGAAAATAGG
118759 GTGGCTGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.21, T:0.05
Consensus pattern (20 bp):
AAAAAAACAGAAAATAGGAA
Found at i:119707 original size:7 final size:7
Alignment explanation
Indices: 119691--119761 Score: 54
Period size: 7 Copynumber: 9.3 Consensus size: 7
119681 TTCAGGTAAA
119691 TTTT-TT
1 TTTTATT
*
119697 TTTTGTT
1 TTTTATT
119704 TTTTATT
1 TTTTATT
119711 TTTTATTTT
1 TTTTA--TT
119720 TTTTAATT
1 TTTT-ATT
*
119728 TTCTAATT
1 TT-TTATT
119736 TTTTATAT
1 TTTTAT-T
119744 ATTATTATT
1 -TT-TTATT
119753 TTTTATT
1 TTTTATT
119760 TT
1 TT
119762 AAGTATTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
6 4 0.07
7 23 0.43
8 12 0.22
9 10 0.19
10 5 0.09
ACGTcount: A:0.17, C:0.01, G:0.01, T:0.80
Consensus pattern (7 bp):
TTTTATT
Found at i:119714 original size:17 final size:17
Alignment explanation
Indices: 119689--119739 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
119679 AGTTCAGGTA
*
119689 AATTTTTTTTTTGTTTTT
1 AATTTTTTATTT-TTTTT
*
119707 TATTTTTTATTTTTTTT
1 AATTTTTTATTTTTTTT
*
119724 AATTTTCTAATTTTTT
1 AATTTT-TTATTTTTT
119740 ATATATTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 10 0.36
18 18 0.64
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (17 bp):
AATTTTTTATTTTTTTT
Found at i:119753 original size:17 final size:17
Alignment explanation
Indices: 119702--119776 Score: 68
Period size: 16 Copynumber: 4.6 Consensus size: 17
119692 TTTTTTTTTG
*
119702 TTTTTTATTTTTTATT-
1 TTTTTTATATTTTATTA
* *
119718 TTTTTTA-ATTTTCTAA
1 TTTTTTATATTTTATTA
*
119734 TTTTTTATATATTATTA
1 TTTTTTATATTTTATTA
* *
119751 TTTTTTAT-TTTAAGTA
1 TTTTTTATATTTTATTA
119767 -TTTTTATATT
1 TTTTTTATATT
119777 GATGCATGAT
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
15 12 0.26
16 21 0.45
17 14 0.30
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.75
Consensus pattern (17 bp):
TTTTTTATATTTTATTA
Found at i:120210 original size:31 final size:30
Alignment explanation
Indices: 120172--120297 Score: 96
Period size: 31 Copynumber: 4.1 Consensus size: 30
120162 TAGGTTTCTA
*
120172 AAACCCCTAAAATTCAAAATCCTTTAAATCC
1 AAACCCCTAAAATCCAAAA-CCTTTAAATCC
* *
120203 AAACCCCTAAAATCCAAAACCCCATAAAATCC
1 AAACCCCTAAAATCCAAAA--CCTTTAAATCC
** * *
120235 AAAATCCT-AAA-CCTTTAAACTTTTAAATCC
1 AAACCCCTAAAATCC--AAAACCTTTAAATCC
* * *
120265 GAACCCCTAAAATCC-AAACCCTTAAATCA
1 AAACCCCTAAAATCCAAAACCTTTAAATCC
120294 AAAC
1 AAAC
120298 ACCAAACCTC
Statistics
Matches: 73, Mismatches: 17, Indels: 12
0.72 0.17 0.12
Matches are distributed among these distances:
29 14 0.19
30 15 0.21
31 24 0.33
32 20 0.27
ACGTcount: A:0.47, C:0.31, G:0.01, T:0.21
Consensus pattern (30 bp):
AAACCCCTAAAATCCAAAACCTTTAAATCC
Found at i:120232 original size:17 final size:16
Alignment explanation
Indices: 120171--120238 Score: 84
Period size: 16 Copynumber: 4.2 Consensus size: 16
120161 CTAGGTTTCT
*
120171 AAAACCCCTAAAATTC
1 AAAACCCCTAAAATCC
* * *
120187 AAAATCCTTTAAATCC
1 AAAACCCCTAAAATCC
120203 -AAACCCCTAAAATCC
1 AAAACCCCTAAAATCC
120218 AAAACCCCATAAAATCC
1 AAAACCCC-TAAAATCC
120235 AAAA
1 AAAA
120239 TCCTAAACCT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
15 12 0.28
16 19 0.44
17 12 0.28
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAACCCCTAAAATCC
Found at i:120286 original size:14 final size:14
Alignment explanation
Indices: 120197--120394 Score: 69
Period size: 15 Copynumber: 13.4 Consensus size: 14
120187 AAAATCCTTT
120197 AAATCCAAACCCCTA
1 AAATCCAAA-CCCTA
120212 AAATCCAAAACCCCATA
1 AAATCC-AAA-CCC-TA
*
120229 AAATCCAAAATCCTA
1 AAATCC-AAACCCTA
* ** ** *
120244 AACCTTTAAACTTTT
1 AA-ATCCAAACCCTA
*
120259 AAATCCGAACCCCTA
1 AAATCC-AAACCCTA
*
120274 AAATCCAAACCCTT
1 AAATCCAAACCCTA
*
120288 AAATCAAAACACC--
1 AAATCCAAAC-CCTA
* ****
120301 AAACCTCAATTTTTA
1 AAATC-CAAACCCTA
*
120316 AAATCGAAACCCTA
1 AAATCCAAACCCTA
*
120330 AAATCTTCAAACTCTA
1 AAATC--CAAACCCTA
*
120346 AAATCAAAACCCTA
1 AAATCCAAACCCTA
* *
120360 AAATCCTCAAA-ACTT
1 AAAT-C-CAAACCCTA
120375 AAATCCAAACCCTTA
1 AAATCCAAACCC-TA
120390 AAATC
1 AAATC
120395 GAATCTTCAA
Statistics
Matches: 130, Mismatches: 39, Indels: 28
0.66 0.20 0.14
Matches are distributed among these distances:
13 8 0.06
14 40 0.31
15 45 0.35
16 25 0.19
17 12 0.09
ACGTcount: A:0.47, C:0.30, G:0.01, T:0.22
Consensus pattern (14 bp):
AAATCCAAACCCTA
Found at i:120348 original size:30 final size:30
Alignment explanation
Indices: 120313--120394 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 30
120303 ACCTCAATTT
* *
120313 TTAAAATCGAAACCCTAAAATCTTC-AAAC
1 TTAAAATCAAAACCCTAAAATCCTCAAAAC
120342 TCTAAAATCAAAACCCTAAAATCCTCAAAAC
1 T-TAAAATCAAAACCCTAAAATCCTCAAAAC
*
120373 TT-AAATCCAAACCCTTAAAATC
1 TTAAAATCAAAACCC-TAAAATC
120395 GAATCTTCAA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
29 12 0.26
30 30 0.64
31 5 0.11
ACGTcount: A:0.49, C:0.27, G:0.01, T:0.23
Consensus pattern (30 bp):
TTAAAATCAAAACCCTAAAATCCTCAAAAC
Found at i:126900 original size:15 final size:16
Alignment explanation
Indices: 126882--126919 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
126872 AGGATGGGGC
126882 ATAAAAAAA-TAAAAA
1 ATAAAAAAAGTAAAAA
126897 ATAAAAAAAAGTAAAAA
1 AT-AAAAAAAGTAAAAA
126914 A-AAAAA
1 ATAAAAA
126920 CAAACCAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 7 0.33
16 7 0.33
17 7 0.33
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.11
Consensus pattern (16 bp):
ATAAAAAAAGTAAAAA
Found at i:126904 original size:17 final size:16
Alignment explanation
Indices: 126884--126919 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
126874 GATGGGGCAT
126884 AAAAAAATAAAAAATAA
1 AAAAAAATAAAAAA-AA
*
126901 AAAAAAGTAAAAAAAA
1 AAAAAAATAAAAAAAA
126917 AAA
1 AAA
126920 CAAACCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.89, C:0.00, G:0.03, T:0.08
Consensus pattern (16 bp):
AAAAAAATAAAAAAAA
Found at i:128757 original size:41 final size:41
Alignment explanation
Indices: 128660--128739 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
128650 TTTAAAGTCT
*
128660 CTGTTTAAGAGGAACC-GTTCTCAATCAAGATTTCAAAGCCA
1 CTGTTTAAGAGGAACCAATT-TCAATCAAGATTTCAAAGCCA
128701 CTGTTTAAGAGGAACCAATTTCAATCAAGATTTCAAAGC
1 CTGTTTAAGAGGAACCAATTTCAATCAAGATTTCAAAGC
128740 TTTTGTTTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
41 35 0.95
42 2 0.05
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (41 bp):
CTGTTTAAGAGGAACCAATTTCAATCAAGATTTCAAAGCCA
Found at i:128922 original size:22 final size:22
Alignment explanation
Indices: 128891--128956 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
128881 GATTTGTAAG
*
128891 ACCTCTGGGCATAATCTTTAAA
1 ACCTCCGGGCATAATCTTTAAA
* *
128913 ACCTCCGGGCACAA-CTTTCAAG
1 ACCTCCGGGCATAATCTTT-AAA
* * *
128935 ACTTTCGGGCATAATCTCTAAA
1 ACCTCCGGGCATAATCTTTAAA
128957 GCCTTTAGGC
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
21 4 0.12
22 27 0.79
23 3 0.09
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (22 bp):
ACCTCCGGGCATAATCTTTAAA
Found at i:128936 original size:44 final size:44
Alignment explanation
Indices: 128888--128979 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
128878 TGAGATTTGT
* *
128888 AAGAC-CTCTGGGCATAATCTTTAAAACCTCCGGGCACAACTTTC
1 AAGACTCTC-GGGCATAATCTCTAAAACCTCCAGGCACAACTTTC
* * ** *
128932 AAGACTTTCGGGCATAATCTCTAAAGCCTTTAGGCATAACTTTC
1 AAGACTCTCGGGCATAATCTCTAAAACCTCCAGGCACAACTTTC
128976 AAGA
1 AAGA
128980 TTTTTAAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 38 0.95
45 2 0.05
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (44 bp):
AAGACTCTCGGGCATAATCTCTAAAACCTCCAGGCACAACTTTC
Found at i:129069 original size:22 final size:22
Alignment explanation
Indices: 129039--129127 Score: 103
Period size: 22 Copynumber: 4.0 Consensus size: 22
129029 AGATTTTGAG
* *
129039 ATCTATAAGACCTTCAGGCATA
1 ATCTCTAAGACCTTCGGGCATA
129061 ATCTCTAAGA-CTTCTGGGCATA
1 ATCTCTAAGACCTTC-GGGCATA
*
129083 A-CTTTCAAGACCTTCGGGCATA
1 ATCTCT-AAGACCTTCGGGCATA
129105 ATCTCTAA-AGCCTTCGGGCATA
1 ATCTCTAAGA-CCTTCGGGCATA
129127 A
1 A
129128 CTTTCAAGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
21 8 0.14
22 43 0.74
23 7 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (22 bp):
ATCTCTAAGACCTTCGGGCATA
Found at i:129105 original size:157 final size:158
Alignment explanation
Indices: 128819--129267 Score: 553
Period size: 157 Copynumber: 2.8 Consensus size: 158
128809 CATGATTAAA
* * *
128819 AAGATTTTCAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTTAAAGATTTTGAGAT
1 AAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGAAGCATTCAAAGATTTTGAGAT
* * * * *
128884 TTGTAAGACC-TCTGGGCATAATCTTTAAAACCTCCGGGCACAACTTTCAAGACTTTCGGGCATA
66 TTGTAAGACCTTC-AGGCATAATCTCTAAAACTTCTGGGCACAACTTTCAAGACCTTCGGGCATA
*
128948 ATCTCTAAAGCCTTTAGGCATAACTTTC-
130 ATCTCTAAAGCCTTCAGGCATAACTTTCT
*
128976 AAGATTTTTAAATTTTTAAAGTTTCATTGTCTCTGATTATGAGAAGCATTCAAAGATTTTGAGAT
1 AAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGAAGCATTCAAAGATTTTGAGAT
* * * *
129041 CTATAAGACCTTCAGGCATAATCTCTAAGACTTCTGGGCATAACTTTCAAGACCTTCGGGCATAA
66 TTGTAAGACCTTCAGGCATAATCTCTAAAACTTCTGGGCACAACTTTCAAGACCTTCGGGCATAA
*
129106 TCTCTAAAGCCTTCGGGCATAACTTTCAAGATTTTTGGGT
131 TCTCTAAAGCCTTCAGGCATAACTTTC------------T
129146 AAAAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGGAA-CATTCAAAGATTTTGA
1 --AAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGA-GAAGCATTCAAAGATTTTGA
* * * * *
129210 GATTTGTAAGACCTTCAAGCGTAATCTCTAATACTTTTGAGCACAACTTTCAAGACCT
63 GATTTGTAAGACCTTCAGGCATAATCTCTAAAACTTCTGGGCACAACTTTCAAGACCT
129268 ATGGGCAAAA
Statistics
Matches: 251, Mismatches: 24, Indels: 19
0.85 0.08 0.06
Matches are distributed among these distances:
157 139 0.55
158 2 0.01
172 107 0.43
173 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (158 bp):
AAGATTTTTAAATTTTTAAAGTTTCATTGCCTCTGATTATGAGAAGCATTCAAAGATTTTGAGAT
TTGTAAGACCTTCAGGCATAATCTCTAAAACTTCTGGGCACAACTTTCAAGACCTTCGGGCATAA
TCTCTAAAGCCTTCAGGCATAACTTTCT
Found at i:129108 original size:44 final size:44
Alignment explanation
Indices: 129045--129136 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 44
129035 TGAGATCTAT
129045 AAGACCTTCAGGCATAATCTCT-AAGACTTCTGGGCATAACTTTC
1 AAGACCTTCAGGCATAATCTCTAAAGACTTC-GGGCATAACTTTC
* *
129089 AAGACCTTCGGGCATAATCTCTAAAGCCTTCGGGCATAACTTTC
1 AAGACCTTCAGGCATAATCTCTAAAGACTTCGGGCATAACTTTC
129133 AAGA
1 AAGA
129137 TTTTTGGGTA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 38 0.84
45 7 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (44 bp):
AAGACCTTCAGGCATAATCTCTAAAGACTTCGGGCATAACTTTC
Found at i:129403 original size:130 final size:128
Alignment explanation
Indices: 129103--129407 Score: 364
Period size: 128 Copynumber: 2.4 Consensus size: 128
129093 CCTTCGGGCA
* * * *
129103 TAATCTCTAAAGCCTTCGGGCATAACTTTCAAGATTTTTGGGTAAAAGATTTTTAAATTTTTAAA
1 TAATCTCTAAAGCCTTCGGGCACAACTTTCAAGATTTTTGGGCAAAAGATTCTCAAATTTTTAAA
* * * *
129168 GTTTCATTGCCTCTGATTATGAGGAACATTCAAAGATTTTGAGATTTGTAAGACCTTCAAGCG
66 GTTTCATTGCCTCTAATTACGAGGAACATTCAAAGATTTTGAGATTTGTAAAACCTCCAAGCG
* * * ** *
129231 TAATCTCTAATA-CTTTTGAGCACAACTTTCAAGACCTATGGGCAAAAGATTCTCAAATTTTTAA
1 TAATCTCTAA-AGCCTTCGGGCACAACTTTCAAGATTTTTGGGCAAAAGATTCTCAAATTTTT--
* * ** *
129295 AAATGTTTTATTGCCTTTAATTACGA-GAAGTGTTCAAAGATTTTGAGATTTGTAAAACCTCCGA
63 AAA-GTTTCATTGCCTCTAATTACGAGGAA-CATTCAAAGATTTTGAGATTTGTAAAACCTCCAA
129359 -CG
126 GCG
*
129361 TAATCTCTAAAGCCTCCGGGCACAACTTTCAAGATTTTTGGGCAAAA
1 TAATCTCTAAAGCCTTCGGGCACAACTTTCAAGATTTTTGGGCAAAA
129408 TTTTTTTTTC
Statistics
Matches: 145, Mismatches: 26, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
128 50 0.34
129 2 0.01
130 46 0.32
131 47 0.32
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (128 bp):
TAATCTCTAAAGCCTTCGGGCACAACTTTCAAGATTTTTGGGCAAAAGATTCTCAAATTTTTAAA
GTTTCATTGCCTCTAATTACGAGGAACATTCAAAGATTTTGAGATTTGTAAAACCTCCAAGCG
Found at i:129668 original size:103 final size:103
Alignment explanation
Indices: 129468--129860 Score: 360
Period size: 103 Copynumber: 3.7 Consensus size: 103
129458 CAAAGATGTT
* * *
129468 ATTTCTAAGACCTCTGGGCATAATTTTGATTCACGATGTTATCCCGATCGATTCTTTATTTTTTG
1 ATTTCTAAGACCTTTAGGCATAATTTCGATTCACGATGTTATCCCGATCGATTCTTTATTTTTTG
* * * * *
129533 ACTTACGGTGTTGTCCCAGTCAATTTTTTAAGAGCATG
66 ACTTACGATGTTGTCCCAATCGATTCTATAAGAGCATG
* * **
129571 ATTCCTAAGACCTTTAGGCATAATTTTGATTCGTGATGTTATCCCGATCGATTCTTTATTTTTTG
1 ATTTCTAAGACCTTTAGGCATAATTTCGATTCACGATGTTATCCCGATCGATTCTTTATTTTTTG
*
129636 ACTTACGATGTTGTCCCAATCGATTCTGTAAGACCTCCAGGCATG
66 ACTTACGATGTTGTCCCAATCGATTCTATAAG------A-GCATG
* * * * * * *
129681 ATTTTTAAGA-CTTCCAGGCATAATTTCGATTCGCGATGTTATCCCAATCAATTCTTTATCTTTC
1 ATTTCTAAGACCTT-TAGGCATAATTTCGATTCACGATGTTATCCCGATCGATTCTTTATTTTTT
* * * *
129745 AAC-TGCGATGTTATCTCAATCGATTCTATAAGACCTCCGAGCATG
65 GACTTACGATGTTGTCCCAATCGATTCTAT-A-A-----GAGCATG
* * * * *
129790 ATTTCTAAGACC-TTCGAACATAATTTCGATTTACGATGTTATCCTGATTGATTCTTTATTTTTT
1 ATTTCTAAGACCTTTAG-GCATAATTTCGATTCACGATGTTATCCCGATCGATTCTTTATTTTTT
129854 GACTTAC
65 GACTTAC
129861 AGTCGATTCT
Statistics
Matches: 234, Mismatches: 38, Indels: 29
0.78 0.13 0.10
Matches are distributed among these distances:
103 87 0.37
108 1 0.00
109 81 0.35
110 63 0.27
111 1 0.00
116 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.40
Consensus pattern (103 bp):
ATTTCTAAGACCTTTAGGCATAATTTCGATTCACGATGTTATCCCGATCGATTCTTTATTTTTTG
ACTTACGATGTTGTCCCAATCGATTCTATAAGAGCATG
Found at i:129689 original size:22 final size:22
Alignment explanation
Indices: 129664--129706 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
129654 ATCGATTCTG
*
129664 TAAGACCTCCAGGCATGATTTT
1 TAAGACCTCCAGGCATAATTTT
*
129686 TAAGACTTCCAGGCATAATTT
1 TAAGACCTCCAGGCATAATTT
129707 CGATTCGCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (22 bp):
TAAGACCTCCAGGCATAATTTT
Found at i:129799 original size:22 final size:22
Alignment explanation
Indices: 129773--129816 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
129763 ATCGATTCTA
* *
129773 TAAGACCTCCGAGCATGATTTC
1 TAAGACCTCCGAACATAATTTC
*
129795 TAAGACCTTCGAACATAATTTC
1 TAAGACCTCCGAACATAATTTC
129817 GATTTACGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (22 bp):
TAAGACCTCCGAACATAATTTC
Found at i:129800 original size:109 final size:105
Alignment explanation
Indices: 129564--129945 Score: 363
Period size: 109 Copynumber: 3.6 Consensus size: 105
129554 AATTTTTTAA
* * * * *
129564 GAGCATGATTCCTAAGACCTT-TAGGCATAATTTTGATTCGTGATGTTATCCCGATCGATTCTTT
1 GAGCATGATTTCTAAGACCTTCCAGGCATAATTTCGATTCGCGATGTTATCCCGATCAATTCTTT
* *
129628 ATTTTTTGACTTACGATGTTGTCCCAATCGATTCTGTAAGACCTCC
66 A--TTTT-AC-T-CGATGTTAT-CCAATCGATTCTATAAGACCTCC
* *
129674 -AGGCATGATTTTTAAGA-CTTCCAGGCATAATTTCGATTCGCGATGTTATCCCAATCAATTCTT
1 GA-GCATGATTTCTAAGACCTTCCAGGCATAATTTCGATTCGCGATGTTATCCCGATCAATTCTT
129737 TATCTTTCAACTGCGATGTTATCTCAATCGATTCTATAAGACCTCC
65 TAT-TTT--ACT-CGATGTTATC-CAATCGATTCTATAAGACCTCC
* * ** * **
129783 GAGCATGATTTCTAAGACCTTCGA-ACATAATTTCGATTTACGATGTTATCCTGATTGATTCTTT
1 GAGCATGATTTCTAAGACCTTCCAGGCATAATTTCGATTCGCGATGTTATCCCGATCAATTCTTT
* * * *
129847 ATTTT--TTGA-CTTA--CAGTCGATTCTATAAGACTTCC
66 ATTTTACTCGATGTTATCCAATCGATTCTATAAGACCTCC
* * * *
129882 GAACATGATTTCTAAGACC-TCCGGGCATAATTTCGATTCGAGGTGTTATCCCGATCAATT-TTT
1 GAGCATGATTTCTAAGACCTTCCAGGCATAATTTCGATTCGCGATGTTATCCCGATCAATTCTTT
129945 A
66 A
129946 AGACCTCCAA
Statistics
Matches: 229, Mismatches: 35, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
98 6 0.03
99 66 0.29
102 3 0.01
103 2 0.01
104 1 0.00
108 5 0.02
109 86 0.38
110 60 0.26
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (105 bp):
GAGCATGATTTCTAAGACCTTCCAGGCATAATTTCGATTCGCGATGTTATCCCGATCAATTCTTT
ATTTTACTCGATGTTATCCAATCGATTCTATAAGACCTCC
Found at i:130072 original size:23 final size:22
Alignment explanation
Indices: 130046--130105 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
130036 TATCTCGGTC
*
130046 GATTTTGTAAGACCTCCGAGCAT
1 GATTTT-TAAGACCTCCGAACAT
*
130069 GATTCTTAAGACCTCCGAACAT
1 GATTTTTAAGACCTCCGAACAT
*
130091 GATTTCTAAGACCTC
1 GATTTTTAAGACCTC
130106 TAGACATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
22 28 0.85
23 5 0.15
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (22 bp):
GATTTTTAAGACCTCCGAACAT
Found at i:130182 original size:131 final size:131
Alignment explanation
Indices: 129943--130184 Score: 312
Period size: 131 Copynumber: 1.8 Consensus size: 131
129933 CGATCAATTT
* * *
129943 TTAAGACCTCCAAACATGATTCTTAAGACCTCTGGGCATAAACTCGATTCGCGATGTTGTCTCGA
1 TTAAGACCTCCAAACATGATTCTTAAGACCTCTAGACATAAACTCGATTCGCGATGTTATCTCGA
* * * **
130008 TTGATTCATTATTTTTAACTTTGGGTGTTATCTCGGTCGATTTTGTAAGACCTCCGAGCATGATT
66 TCGATTCATTATTTTTAACTTTGGGTGTCATCCCAATCGATTTTGTAAGACCTCCGAGCATGATT
130073 C
131 C
* * *
130074 TTAAGACCTCCGAACATGATT-TCTAAGACCTCTAGACATAAATTTGATTCGCTG-TGTTATCTC
1 TTAAGACCTCCAAACATGATTCT-TAAGACCTCTAGACATAAACTCGATTCGC-GATGTTATCTC
*
130137 GATCGATTCATTATTTTTTGAC-TTGCGGTGTCATCCCAATC-ATTTTGT
64 GATCGATTCATTA-TTTTTAACTTTG-GGTGTCATCCCAATCGATTTTGT
130185 GTTTTAAAAA
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
130 1 0.01
131 75 0.79
132 19 0.20
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (131 bp):
TTAAGACCTCCAAACATGATTCTTAAGACCTCTAGACATAAACTCGATTCGCGATGTTATCTCGA
TCGATTCATTATTTTTAACTTTGGGTGTCATCCCAATCGATTTTGTAAGACCTCCGAGCATGATT
C
Found at i:130390 original size:18 final size:19
Alignment explanation
Indices: 130367--130402 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
130357 ATTAATTATT
130367 AAAAAAA-AGAAAATAGGA
1 AAAAAAATAGAAAATAGGA
*
130385 AAAAAAATAGAAAGTAGG
1 AAAAAAATAGAAAATAGG
130403 GTGGCTGGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.08
Consensus pattern (19 bp):
AAAAAAATAGAAAATAGGA
Found at i:132360 original size:16 final size:16
Alignment explanation
Indices: 132341--132379 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
132331 AATTAATAAT
132341 ATAATTAATTTATATA
1 ATAATTAATTTATATA
*
132357 ATAATCAATTTATATA
1 ATAATTAATTTATATA
*
132373 ATTATTA
1 ATAATTA
132380 TATAATTATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
ATAATTAATTTATATA
Found at i:132371 original size:29 final size:28
Alignment explanation
Indices: 132339--132397 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
132329 TAAATTAATA
132339 ATATAATTAATTTATATAATAATCAAT-TT
1 ATATAATT-A-TTATATAATAATCAATATT
*
132368 ATATAATTATTATATAATTATCAATATT
1 ATATAATTATTATATAATAATCAATATT
132396 AT
1 AT
132398 TATATAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 15 0.54
28 5 0.18
29 8 0.29
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (28 bp):
ATATAATTATTATATAATAATCAATATT
Found at i:132382 original size:11 final size:11
Alignment explanation
Indices: 132366--132404 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
132356 AATAATCAAT
132366 TTATATAATTA
1 TTATATAATTA
132377 TTATATAATTA
1 TTATATAATTA
*
132388 TCA-AT-ATTA
1 TTATATAATTA
132397 TTATATAA
1 TTATATAA
132405 AAATAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 6 0.25
10 4 0.17
11 14 0.58
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (11 bp):
TTATATAATTA
Done.