genome.fa.s47.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167872.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67158

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733--791	23	2.6	23	94	0	109	13	20	35	30	1.91
1956--2549	35	16.9	35	70	9	199	40	14	25	19	1.89
1992--2345	36	9.9	36	74	3	243	41	16	25	16	1.89
2047--2326	107	2.6	106	87	1	389	41	17	26	15	1.89
1992--2345	71	5.0	70	71	8	248	41	16	25	16	1.89
2388--2560	69	2.5	69	79	3	170	42	10	22	24	1.86
2462--2560	34	2.9	35	77	8	112	38	9	26	26	1.86
13848--13889	22	2.0	21	85	4	57	16	0	23	59	1.37
13848--13918	37	1.9	37	85	0	97	16	0	26	56	1.41
13907--13982	29	2.6	30	78	4	82	21	2	26	50	1.62
15492--15557	28	2.3	27	73	19	62	21	7	45	25	1.78
17510--17554	23	2.0	23	100	0	90	37	4	26	31	1.76
21249--21327	8	9.6	8	80	17	74	77	0	16	6	0.97
21237--21327	9	10.7	9	76	21	65	76	0	16	6	0.98
21242--21301	8	7.9	7	82	17	59	78	0	18	3	0.89
21239--21327	19	4.6	19	75	18	69	78	0	15	5	0.93
21923--22268	79	4.4	79	82	5	385	36	8	23	31	1.85
21932--22268	158	2.1	158	84	3	428	36	8	23	30	1.86
23000--23276	44	6.4	43	86	2	356	24	15	17	42	1.87
23298--23513	44	5.0	44	79	5	215	26	13	17	42	1.87
23299--23502	87	2.3	88	78	9	220	25	14	16	42	1.87
23276--23517	131	1.9	130	86	4	353	26	13	17	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24582--24608	8	3.4	8	100	0	54	88	0	0	11	0.50
24830--24890	27	2.3	28	75	11	65	42	8	11	37	1.71
26754--26786	14	2.2	16	89	10	52	69	0	0	30	0.88
30501--31019	260	2.0	261	84	5	685	36	12	15	35	1.86
30797--30962	63	2.7	61	75	13	167	39	14	14	31	1.86
30923--31073	62	2.5	61	81	10	166	37	15	13	33	1.87
30521--31236	322	2.2	319	78	10	780	37	12	15	34	1.85
33300--33341	18	2.3	19	84	12	61	52	21	7	19	1.69
34608--34637	16	1.9	16	93	6	53	70	0	0	30	0.88
35202--35237	12	2.9	12	87	4	54	55	30	0	13	1.39
35227--35312	19	4.5	19	72	5	66	41	22	11	24	1.86
35226--35327	38	2.7	38	80	4	116	40	19	12	27	1.88
35564--35598	14	2.5	14	86	13	54	80	0	2	17	0.84
41314--41394	19	4.6	18	76	16	73	77	2	16	3	1.01
41314--41364	20	2.5	20	87	6	77	78	0	17	3	0.90
41328--41394	31	2.2	30	84	7	82	79	2	14	2	0.98
42679--43081	33	12.2	33	72	10	215	37	20	13	28	1.91
42696--43026	166	2.0	166	91	0	536	36	20	13	29	1.91
43485--43524	17	2.3	17	91	4	62	82	12	0	5	0.82
43477--43564	25	3.5	24	73	14	63	78	14	1	5	0.99
43492--43563	13	5.4	13	73	15	58	77	16	1	4	0.99
45163--45228	18	3.7	18	74	22	59	13	7	6	72	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54925--54957	17	2.0	17	94	5	59	30	12	6	51	1.63
55083--55270	43	4.4	44	78	7	174	30	11	14	44	1.80
55159--55284	42	3.0	42	75	14	125	26	12	16	43	1.84
57725--57749	1	25.0	1	100	0	50	100	0	0	0	0.00
59812--59903	29	3.2	28	81	9	105	44	1	2	52	1.20
60394--61735	687	2.0	676	80	10	1541	37	10	7	44	1.68
66390--66428	16	2.6	15	88	8	53	51	5	0	43	1.24

Tables:   1

The End!