Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168297.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23941
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Found at i:822 original size:26 final size:26
Alignment explanation
Indices: 792--844 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
782 GTTGACTTAG
792 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
844 G
1 G
845 ATCAGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1735 original size:26 final size:26
Alignment explanation
Indices: 1698--1748 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1688 GTTGACTTAG
*
1698 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1724 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
1749 TGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3541 original size:26 final size:26
Alignment explanation
Indices: 3503--3584 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
3493 TGGGTTGACT
*
3503 TAAGCATACGGAGTTCATTCCCGGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
3529 TAAGCAGATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
3555 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
3581 TAAG
1 TAAG
3585 ATTGGACCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:3898 original size:921 final size:915
Alignment explanation
Indices: 1--9768 Score: 10827
Period size: 921 Copynumber: 10.9 Consensus size: 915
* * * ** *
1 TGCCACATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
1 TGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * * *
66 TTGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTT
66 TGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
131 GGCCCATATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
131 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
196 TGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTTAAATGGGGACACTTTTTTCAAA
196 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
**
261 TGGTCACAAAATAATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATA
261 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
325 TAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCGATAAAATTTTAAAAAATCCCGAA
326 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA
* * * *
390 CAGCAAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCGT
391 CCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
455 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
455 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-A-TGGCATGCAGAAATAT
* * * * **
520 GAGGATGTGCCTAAAGCCACCTACCACTCTATCGATCCACGGCATGTGCATCCCGTCTCTCTGGC
518 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTGGC
* * * * * *
585 CGACGTAGTGCCCGCCCGCCCACCCGTTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
583 CGGCGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * * *
650 CCAGTCTAAGATTGG-CCTGGATCAAGGGTTGTGGCAGCAGAATCGGCAGCACGTAGATGGGGAC
648 CCAGTCTAAGATCGGACC-GGACCGAGGGTGGTGCCAACAGGATCGACAGCACGCAGAGGGGGAC
* * * * *
714 TCAGT-AGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCGCGCACGCTCGTTTC
712 CCGGTCA-ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
*
778 ATGGGTTGAC-T-----TA--G-G--CA--------TACA-GAGTTCATTCCCAGTCTAAGCATA
776 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCGTCTACAGGAGTTCATTCCCAGTCTAAGCATA
* * * * * * *
823 CGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGAGTTGCGGCAACACATGCTGGGCTC-A
841 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC-GTAGCACATGCTGGGCTCGA
*
887 GACATGTGCTAG
905 G-CATGTGCTGG
* * ** * * * *
899 TGCCGCATTTTTCTTC-TCCGAGGCACCATCGCCTAAGCAT-GCCAGAGAACCTGATCAGCGGCA
1 TGCCGCATTTTTCTTCAT-CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * *
962 TTAGGGTTCC-AGCGATCGGGGGGCCGGGGGGGTGTGCACACATGATGGTGCGAATGGGTGCTGG
65 TTGGGGTTCCGA-CGATCGGGGGGTC-GGGGGGTGTGCGCACATGAT-GTGCG-ATGGGTGCTGG
*
1026 TACTTGGCCCTTATATTGGCCCCCTATCCCTCCATCAAACCTCAAGAACTCACACCCCC-TAAAG
126 TACTTGGCCCTTATATTGGCCCCCTATCCCT-CATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
1090 AGCATTTGAGATTTTACAGGTTTGGCTGCCAGT-GCCATTGTAAACTGTCTAGAATGGGGACACT
190 AGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCA-T-TAAAGTGTCTAAAATGGGGACACT
1154 TTTTTCAAATGGTCCACAAAATCTTGTAACACTTCGAGTTTTTAGGCTGAATTTTTTTGTGCATG
252 TTTTTCAAATGGT-CACAAAATCTTGT-ACACTTCGAGTTTTTA-GCTGAATTTTTTTGTGCATG
** * *
1219 CCCAGA-AAAAATAGCAAGGATCA-CACTACCAAGTTTTTGGGCC-AAACTCC-TCCAAAAAAAT
314 -CCA-ACAAAAATA-CAAGGATCATGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
1280 TTTAAAAAAATCCCGAA-CGCGAAAAGTTTCAAAAAT-TTGTCAAAATAGAAAAACGAGTCGTCT
375 TTT-AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTG-AAAAATAG-AAAACGAGTCGTCT
1343 TGCCATG-AAC-TCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAAGCCATAAAAATGG
437 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGG
* * *
1405 CATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CACCCTATCGATCCACGGCTTG
501 -A-TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTC
* * * * ** *
1469 CGCATCCCGTCTCTC-GGCCGACGTAGTGCCCACCCGCTCGCCAGCCCGTTCGTTTAATCGGTTG
564 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-TCCCGCTCGTTTCGTCAGTTG
* * * * * *
1533 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGA
625 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTGGTGCCAACAGGA
* * * * * * * * *
1598 TTGGCAGCACACAGAGGGGGACCCGACTGAA-CCTCGGCTTACGCATCCCGCCCTTCTGGCCGGC
690 TCGACAGCACGCAGAGGGGGACCCG-GTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1662 TGAGTGCCCGCACGTTCATTTCGCGGGTTGAC-T-----TA--G-G--CA--------TAC-GGA
754 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGTCTACAGGA
* * * * * * *
1707 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTATGATCAGACCGGACAGAGGTTTA
819 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG
* *
1772 CGACAGCACAAGCTGGGCTCGAGCATGTGCTGG
884 CG-TAGCACATGCTGGGCTCGAGCATGTGCTGG
* * *
1805 TGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCCGAGCATCGTCAGAAAACCTG
1 TGCCGCATTTTTCTTCATCGGGGCACCAT---C---G--TCG---GAGCATCGTCGGAGAACCTG
* * *
1870 ACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGG
55 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
1935 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCT
120 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
2000 TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATAGGGACA
185 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* * * *
2065 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTT-TCCATGA
250 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
2129 AAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTAAA
315 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * ** *
2194 AAAAT-CTCAAACCGCAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTAGCCATG
380 AAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
2258 AAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCA
444 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-A-TGGCA
*** * * * *
2323 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCAATCCACGGCATGCGCATCCC
507 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCC
* **
2388 GTCTCTCTGGCCGGCGT-GATGCCCGCCTGCCCGCCCACCCGCTCG-TTCGTTGGTTGGCTTAGG
572 GTCTCTCTGGCCGGCGTAG-TG--C-CC-GCCCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGG
* *** ** * * * *
2451 TATACGGAGTTCATTCTTGGTCTAAGATTTGATCGGACCGAGGGTTGTGGCAGCAGGATC-AGCA
632 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTGGTGCCAACAGGATCGA-CA
* * ** * * * * *
2515 GCACACAGAGGGTGACCCGACCGAT-CCTGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCGC
696 GCACGCAGAGGGGGACCCGGTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
2579 CCGCACGCTCGATACGTGGGTTAACTTAGGCATACGGAGTTCATT--C--C--C---AG-----T
761 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGTCTACAGGAGTTCATT
* * * * *
2630 --CA----AAGCATACAGAGTTCATTCCCAGTCTATGATCGGACCGGACTGAGGGTTACGACAGC
826 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCG-TAGC
*
2689 ACATGCTGGGCTC-AGGCATGTGCTGA
890 ACATGCTGGGCTCGA-GCATGTGCTGG
* * ** * * * * *
2715 TGCCGTATTTTTCTTCACCGGGGCACCATCACCTGAGCATCGCCGGAAAACCTGACCAGCAGCAT
1 TGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
*
2780 TAGGGGTTCCGACGATCGGGGTGGTCGGGGGG-GTGTCTGCACATGATGTGCAATGGGTGCTGGT
66 T-GGGGTTCCGACGATCGGGG-GGTCGGGGGGTGTG-C-GCACATGATGTGCGATGGGTGCTGGT
* * * *
2844 GCTTGGCCCCTATATTGGCCCGCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGAG
127 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
2909 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTT
192 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* * *
2974 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTACGTGCCAACAAA
257 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
3039 AATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCA
322 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-
* * * *
3104 C-GAACCGTAAAAAGTTTCAAATATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTA
386 CTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
3168 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-TGGCATGCAAAAAT
451 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGATGGCATGCAGAAAT
* *
3232 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTCCGCATCCCGTCTCTTTG
516 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTG
* * *
3297 GCCGACGTAGTGCCCGCCTGCCCTCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
581 GCCGGCGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
* * * *
3362 TCCCTGTCTAAGATCGGACCAGACCGAGGGTGGTGCCAACAGGATCGACAACACGTAGAGGGGGA
646 TCCCAGTCTAAGATCGGACCGGACCGAGGGTGGTGCCAACAGGATCGACAGCACGCAGAGGGGGA
* *
3427 CCCGGTCAATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCACGCACGCTCGTTTC
711 CCCGGTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
*
3492 GTGGGTTGACTTAAGCATACGGAGTTCATTCCCGGTCTAAGCAGATGGAGTTCATTCCCAGTCTA
776 GTGGGTTGACTTAGGCATACGGAGTTCATTCCC-GTCT-A-C--A-GGAGTTCATTCCCAGTCTA
* *
3557 AGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTCGTAGCTCATGCTGG
835 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG-CGTAGCACATGCTGG
3622 GCTCGAGCATGTGCTGG
899 GCTCGAGCATGTGCTGG
** * *
3639 TGCCATATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACTTGATCGGCGGCAT
1 TGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
*
3704 TGAGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
66 TGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
3769 GGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
131 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
3834 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAAATGGGGACATTTTTTTCAAA
196 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* *
3899 TGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATA
261 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*
3964 CAAGGATCATGTCTACCAAGTTTGGGGCCAAGAA-TCCTTCCAAAAAAATTTTAAAAAATCCTGA
326 CAAGGATCATGTCTACCAAGTTTGGGGCCAA-AACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
* * * * *
4028 ACCGTAAAAAGTTCCAAAAATCGTGAAAAAGATAAAACGAGACGTCTTGCCATGAAACTTCACGT
390 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
4093 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATCAAAATGGCATTGGCATGCAGAAATAT
455 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-A-TGGCATGCAGAAATAT
* * * *
4158 GAAGATGTGCCTAAACGCAGCTACCACCCT-T-GATCCACGGCTTGCGCATCCTGTCTCTCTGGC
518 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTGGC
* *
4221 CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTC
583 CGGCGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
4286 CCAGTATAAGATCGGACCGGATCGAGGATGGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
648 CCAGTCTAAGATCGGACCGGACCGAGGGTGGTGCCAACAGGATCGACAGCACGCAGAGGGGGACC
* * * *
4351 CGGTCAATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCAT
713 CGGTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
4416 GGGTTGAC-T-----TA--G-G--CA--------TAC-GGAGTTCATTCCCAGTCTAAGCATACG
778 GGGTTGACTTAGGCATACGGAGTTCATTCCCGTCTACAGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
4461 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGTTGGGCTCGAGC
843 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC-GTAGCACATGCTGGGCTCGAGC
4526 ATGTGCTGG
907 ATGTGCTGG
* * * * *
4535 TGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATTGCCAGA-AACCTGACCGGCGGCAT
1 TGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * * * *
4598 TAGGGTTCCGTCGATC-GGGGGCCGGGCAGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
66 TGGGGTTCCGACGATCGGGGGGTCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
4662 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCAT
130 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
4727 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGAGGACATTTTTTTCAA
195 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* * * *
4792 ATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAG
260 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
*
4857 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAGAA-TCCTTCCAAAAAAATTTTAAAAAATCCTG
325 ACAAGGATCATGTCTACCAAGTTTGGGGCCAA-AACTCCTTCCGAAAAAATTTTAAAAAATCCTG
* * *
4921 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCAAG
389 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
** * * *
4986 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTG--T-C-----CAC
454 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-ATGGCATGCAGAAATAT
* * * * **
5043 G--GCT-TG-C---A--CA--T--C-CCGTCTC--T-C-TGG---CCG-A---CG--T-AGT-GC
518 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTGGC
* * * * *
5079 C--C-----GCCCCCCCGCCCGT-CCGCTCGTTTTGTCAGTTCGCTTAGACATACGGAGTTCCTT
583 CGGCGTAGTGCCCGCCCGCCC-TCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
5136 TCCAATCTAAGATCGGACCGGACTGAGGGT--TGCGATAGCAGGATC-AGCAGCATGAAGAGTGG
647 CCCAGTCTAAGATCGGACCGGACCGAGGGTGGTGCCA-A-CAGGATCGA-CAGCACGCAGAGGGG
* * * * * * *
5198 GACCCGGCCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCATGCTCATT
709 GACCCGGTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
5263 TCGTGGGTTGACTTAGGCATACGGAGTTCATT--C--C--CA--A--TC--T---A----AA-AA
774 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGTCTACAGGAGTTCATTCCCAGTCTAAGCA
* * **
5308 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTC
839 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC-GTAGCACATGCTGGGCTC
*
5373 GGGCATGTGCTGG
903 GAGCATGTGCTGG
* * * *
5386 TGCCGCATTTTTCTTCTTCGGGGCACCATCG-CTGGAGCTTCG-CTGGAGAACCTGACCGACGAC
1 TGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGTC-GGAGAACCTGACCGGCGGC
*
5449 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
64 ATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
5514 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCA
129 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
5579 TTTGAGATTTTACAGTTTTACTGCCAGTAGCCATTAAAGTGTTTGAAATTGGGG-CACTTTTTTC
194 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAATGGGGACACTTTTTTC
* * * *
5643 AAATGGTCACAAAATCTTGTACACTACGAGTTTTTGGCTAAATTTCTTTGTGCATGCCAACAAAA
258 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
5708 ATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCTTTCCGAAAAAATTTTAAAAAATCCT
323 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
* *
5773 GAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAT
388 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
5838 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-TGGCATGCAAAAATAT
453 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGATGGCATGCAGAAATAT
* * * * *
5902 GAAGATGTGCCTGAACCCACCTATCACCCTATCGATCCACGACTTCCGCATCCCGTCTCTTTGGT
518 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTGGC
* * *
5967 CGACGTAGTGCCCGCCTGCCCTCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
583 CGGCGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
6032 CCTGTCTAAGATCGGACCAGACCGAGGGTGGTGCCAACAGGATCGACAACACGTAGAGGGGGACC
648 CCAGTCTAAGATCGGACCGGACCGAGGGTGGTGCCAACAGGATCGACAGCACGCAGAGGGGGACC
* *
6097 CGGTCAATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCACGCACGCTCGTTTCGT
713 CGGTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
6162 GGGTTGACTTAAGCATACGGAGTTCATTCCCGGTCTAAGCAGATGGAGTTCATTCCCAGTCTAAG
778 GGGTTGACTTAGGCATACGGAGTTCATTCCC-GTCT-A-C--A-GGAGTTCATTCCCAGTCTAAG
* *
6227 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTCGTAGCTCATGCTGGGC
837 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG-CGTAGCACATGCTGGGC
6292 TCGAGCATGTGCTGG
901 TCGAGCATGTGCTGG
** * *
6307 TGCCATATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACTTGATCGGCGGCAT
1 TGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
*
6372 TGAGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
66 TGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
6437 GGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
131 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
6502 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAAATGGGGACATTTTTTTCAAA
196 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* *
6567 TGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATA
261 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
6632 CAAGGATCATGTCTACCGAGTTTGGGGCCAAGAA-TCCTTCCAAAAAAATTTTAAAAAATCCTGA
326 CAAGGATCATGTCTACCAAGTTTGGGGCCAA-AACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
* * *
6696 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCAAGT
390 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
** * * *
6761 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTG--T-C-----CACG
455 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-ATGGCATGCAGAAATATG
* * * * **
6818 --GCT-TG-C---A--CA--T--C-CCGTCTC--T-C-TGG---CCG-A---CG--T-AGT-GCC
519 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTGGCC
* * * * * *
6854 --C-----GCCCCCCCGCCCGT-CCGCTCGTTTTGTCAGTTCGCTTAGACATACGGAGTTCCTTT
584 GGCGTAGTGCCCGCCCGCCC-TCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
6911 CCAATCTAAGATCGGACCGGACTGAGGGT--TGCGATAGCAGGATC-AGCAGCATGAAGAGTGGG
648 CCAGTCTAAGATCGGACCGGACCGAGGGTGGTGCCA-A-CAGGATCGA-CAGCACGCAGAGGGGG
* * * * * * *
6973 ACCCGGCCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCATGCTCATTT
710 ACCCGGTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
7038 CGTGGGTTGACTTAGGCATACGGAGTTCATT--C--C--CA--A--TC--T---A----AA-AAT
775 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGTCTACAGGAGTTCATTCCCAGTCTAAGCAT
* * **
7083 ACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGTAGCACATGCTGGGGGCT
840 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC-GTAGCACATGCT--GGGCT
*
7148 CGGGCATGTGCTGG
902 CGAGCATGTGCTGG
* * * *
7162 TGCCGCATTTTTCTTCTTCGGGGCACCATCG-CTGGAGCTTCG-CTGGAGAACCTGACCGACGAC
1 TGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGTC-GGAGAACCTGACCGGCGGC
*
7225 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
64 ATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
7290 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGC
128 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
7355 ATTTGAGATTTTACAGTTTTACTGCCAGTAGCCATTAAAGTGTTTGAAATTGGGG-CACTTTTTT
193 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAATGGGGACACTTTTTT
* * * *
7419 CAAATGGTCACAAAATCTTGTACACTACGAGTTTTTGGCTAAATTTCTTTGTGCATGCCAACAAA
257 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
7484 AATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCTTTCCGAAAAAATTTTAAAAAATCC
322 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
*
7549 TGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
387 TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
7614 TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAA
452 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-A-TGGCATGCAGAAA
* * * *
7679 TATGAAGATGTCCCCAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT-CC--CTCTCT
515 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCT
* * * * * * * *
7741 GGCTGGGGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGTAGTGCA
580 GGCCGGCGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
* * * * * * *
7806 TTCCCAGTCTAAGATTGGACCAGACTGAGGGTGGTGGCAGCAGGATCGATAGGCACGCGGAGGGG
645 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTGGTGCCAACAGGATCGACA-GCACGCAGAGGGG
* * * * * *
7871 GACCC-GACAGATCCTCGACTTGTGCAACCCGCCCCTCTGGCCAGCTGAGCGCCCACGACGCTCG
709 GACCCGGTCA-ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC-ACGCTCG
*
7935 -TTCATGGGTTGAC-T---C--A-GG-G--CA--------TAC-GGAGTTCATTCCCAGTCTAAG
772 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGTCTACAGGAGTTCATTCCCAGTCTAAG
* * * * *
7980 CATACGGGAGTTCTTTCCCAGTCTAAGATCGGTATCGGACTGAGGGTTTGCCGACAGGACCATGC
837 CATAC-GGAGTTCATTCCCAGTCTAAGATCGG-ACCAGACTGAGGG-TTG-CG-TAGCA-CATGC
*
8045 TGGGCTCGGGCATGTTGCTGG
896 TGGGCTCGAGCATG-TGCTGG
* * * * *
8066 TTCTGCA-TTTTCTTCGTCGGGGCACCATTCGTCGGAGCATCGTCGAAGAACCTGACCGACGGGC
1 TGCCGCATTTTTCTTCATCGGGGCACCA-TCGTCGGAGCATCGTCGGAGAACCTGACCGGC-GGC
* * *
8130 ATTGGGGTTCCGACGATCGGGGGACG-GGGGGGGTGTGCACACATGATGTGCGATCGGTGCTGGT
64 ATTGGGGTTCCGACGATCGGGGG--GTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
8194 ACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
127 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
8259 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
192 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* * * *
8324 CAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTCAACTGAATTGTTTTGTGCATGCCAACAAA
257 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
8389 AATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAACAATCC
322 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * *
8454 TGAACCACAAAAAGTTTCCAAAATCATGAAAATTAGAAAACGAGTAGTCTTGCCATGAAACTTCA
387 TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
8519 CGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAATGGCATGCAGAAA
452 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG--ATGGCATGCAGAAA
* *
8584 TATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
515 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCT
* * * * *
8649 GGCCGGCATAGTGCCCGCCCGCCCGCCGGCACGCTCGTTTCATCGGTCGGCTTAGGCATACGGAG
580 GGCCGGCGTAGTGCCCGCCCGCCC-TC--C-CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG
* * * * ** ** * * *
8714 TTCATTCCCAATC-AAGATCAGACCGGACCGAGGGTTGCGGTATTACGATCGGCAGCACGTAGAG
641 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTGGTGCCAACAGGATCGACAGCACGCAGAG
* * *
8778 GGGGACCCGGCCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
706 GGGGACCCGGTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
8843 GTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC--C---A----A---CCA---T-
771 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-GTCTACAGGAGTTCATTCCCAGTCTA
* * * *
8892 ---AT--GGAGTTCATACCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGG
835 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCG-TAGCACATGCTGG
* *
8952 GCTTGGGCATGTGCTGG
899 GCTCGAGCATGTGCTGG
* * * *
8969 TGCCGTATTTCTCTTCA------C-CGA--G--GGAGCATCTTCGGAGAACCTGACCGGCGGCAT
1 TGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * * *
9023 TGTGGTTTCGACGATCAGGGGGGTCGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGCACT
66 TGGGGTTCCGACGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
9088 TGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCAT
130 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
9153 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGTGGACACTTTTTTCAA
195 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* * *
9218 ATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTACGTGCCAA-AAAAAT
260 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * *
9282 TCAAGGATCATGTCTGCCAAGTTTGGGGACAAAAATCCTTTCGAAAAAATTTTAAAAAAT-CTCG
325 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-G
** ** *
9346 AATAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACG
389 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
9411 TGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGTAGAAATA
454 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-A-TGGCATGCAGAAATA
** * * * * *
9476 TGAAGATACGCCTAAACCCAGCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCACCCTGG
517 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTGG
* * * * * *
9541 CCGGCATAGTGCCTGCCCG----CCCACTCATTTCATC-GATTGAG-TTAGGCAGACGGAGTTCA
582 CCGGCGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCAG-TTG-GCTTAGGCATACGGAGTTCA
* * * * * * * ** * * *
9600 TTCCAAGTCCAAGATCGAATCGAACCAAAGGTTATGACAGCAAGATCGACAGCACGCAGAGGGGG
645 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTGGTGCCAACAGGATCGACAGCACGCAGAGGGGG
* * * * * * * *
9665 ACCCGGTCGATCCCTGACTTACGTA-CCTGCCCCTCTGGTCGGCTGAGCACCCGTACGCTCGTTT
710 ACCCGGTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
9729 CGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTA
775 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-GTCTA
9769 AGATCGGACC
Statistics
Matches: 7662, Mismatches: 839, Indels: 752
0.83 0.09 0.08
Matches are distributed among these distances:
849 3 0.00
850 2 0.00
851 262 0.03
852 14 0.00
853 450 0.06
854 21 0.00
855 88 0.01
856 386 0.05
857 12 0.00
858 4 0.00
859 6 0.00
860 3 0.00
861 5 0.00
862 5 0.00
863 4 0.00
864 1 0.00
865 4 0.00
866 3 0.00
867 2 0.00
868 4 0.00
869 3 0.00
870 3 0.00
871 4 0.00
872 4 0.00
873 5 0.00
874 4 0.00
875 1 0.00
876 4 0.00
877 6 0.00
878 4 0.00
879 181 0.02
880 4 0.00
881 4 0.00
882 110 0.01
883 68 0.01
884 3 0.00
885 3 0.00
886 5 0.00
887 4 0.00
888 4 0.00
889 7 0.00
890 257 0.03
891 233 0.03
892 32 0.00
893 13 0.00
894 425 0.06
895 189 0.02
896 141 0.02
897 136 0.02
898 210 0.03
899 101 0.01
900 186 0.02
901 76 0.01
902 262 0.03
903 284 0.04
904 167 0.02
905 520 0.07
906 312 0.04
907 73 0.01
908 119 0.02
909 52 0.01
910 303 0.04
911 195 0.03
912 76 0.01
913 41 0.01
914 42 0.01
915 77 0.01
916 16 0.00
917 27 0.00
918 46 0.01
919 2 0.00
920 16 0.00
921 896 0.12
922 229 0.03
923 25 0.00
924 168 0.02
925 4 0.00
927 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (915 bp):
TGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA
CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGATGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTGGCCGG
CGTAGTGCCCGCCCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACCGGACCGAGGGTGGTGCCAACAGGATCGACAGCACGCAGAGGGGGACCCGG
TCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCGTCTACAGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGTAGCACATGCTGGGCTCGAGCATGT
GCTGG
Found at i:4458 original size:26 final size:26
Alignment explanation
Indices: 4428--4480 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4418 GTTGACTTAG
4428 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4454 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4480 G
1 G
4481 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5317 original size:26 final size:26
Alignment explanation
Indices: 5281--5330 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5271 TGACTTAGGC
5281 ATACGGAGTTCATTCCCAATCTAAAA
1 ATACGGAGTTCATTCCCAATCTAAAA
*
5307 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAATCTAA
5331 GATCAGATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAAA
Found at i:6209 original size:26 final size:26
Alignment explanation
Indices: 6171--6252 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
6161 TGGGTTGACT
*
6171 TAAGCATACGGAGTTCATTCCCGGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
6197 TAAGCAGATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6223 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6249 TAAG
1 TAAG
6253 ATTGGACCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:7091 original size:26 final size:26
Alignment explanation
Indices: 7055--7104 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
7045 TGACTTAGGC
7055 ATACGGAGTTCATTCCCAATCTAAAA
1 ATACGGAGTTCATTCCCAATCTAAAA
*
7081 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAATCTAA
7105 GATCAGATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAAA
Found at i:7984 original size:26 final size:27
Alignment explanation
Indices: 7953--8006 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
7943 TTGACTCAGG
7953 GCATAC-GGAGTTCATTCCCAGTCTAA
1 GCATACGGGAGTTCATTCCCAGTCTAA
*
7979 GCATACGGGAGTTCTTTCCCAGTCTAA
1 GCATACGGGAGTTCATTCCCAGTCTAA
8006 G
1 G
8007 ATCGGTATCG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (27 bp):
GCATACGGGAGTTCATTCCCAGTCTAA
Found at i:8567 original size:905 final size:890
Alignment explanation
Indices: 6812--9769 Score: 3619
Period size: 905 Copynumber: 3.3 Consensus size: 890
6802 AATGGCATTG
* * * *
6812 TCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCCGCCCGTC-CGCTCG
1 TCCACGGCTTGCGCAT-CC--CTCTCTGGCCGGCATAGTGCCCGCCCGCCCG-CCG-CACGCTCG
** * * * * * * * *
6876 TTTTGTCAGTTC-GCTTAGACATACGGAGTTCCTTTCCAATCTAAGATCGGACCGGACTGAGGGT
61 TTTCATC-GGTCGGCTTAGGCATACGGAGTGCATTCCCAATC-AAGATCAGACCAGACCGAGGGT
* ** * * * * * * * * *
6940 TGCGATAGCAGGATC-AGCAGCATGAAGAGTGGGACCCGGCCGATCCCCGGCTTGCTCATCCCGC
124 GGCGGCAGCACGATCGA-CAGCACGCAGAGGGGGACCCGACAGATCCCCGACTTGCGCAACCCGC
* * *
7004 CCCTCTGGCCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
188 CCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * **
7069 CCCAATCTAAAAATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGTAGC
252 CCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTGCGACAGC
7134 ACATGCTGGGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTTCGGGGCACCATCGCTGGAG
316 ACATGCT--GGGCTCGGGCATGTGCTGGTGCCGCA-TTTTCTTC-TCGGGGCACCATCGC-GGAG
* *
7199 CTTCG-CTGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC
376 CATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG--GGGGGGTGTGC
7263 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
438 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
7328 TCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTACTGCCAGTAGCCATTAA
503 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
7393 AGTGTTTGAAATTGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTGG
568 AGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
7457 CTAAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAAC
632 CTGAATTT-TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAAC
*
7522 TCTTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAA
696 TCCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
7587 AACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
761 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
7652 CATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTCCCCAAACCCACCTACCACCCTATCGA
826 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGA
* * ** *
7717 TCCATGGCTTGCGCATCCCTCTCTGGCTGGGGTAGTGCCCGCCTGCCCG-C-C-CGCTCGTTTCA
1 TCCACGGCTTGCGCATCCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCGCACGCTCGTTTCA
* * * ** * *
7779 TCGGTTGGCTTAGGCATACGTAGTGCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTGGTGGC
66 TCGGTCGGCTTAGGCATACGGAGTGCATTCCCAATC-AAGATCAGACCAGACCGAGGGTGGCGGC
* * * * *
7844 AGCAGGATCGATAGGCACGCGGAGGGGGACCCGACAGATCCTCGACTTGTGCAACCCGCCCCTCT
130 AGCACGATCGACA-GCACGCAGAGGGGGACCCGACAGATCCCCGACTTGCGCAACCCGCCCCTCT
* * * *
7909 GGCCAGCTGAGCGCCCACGACGCTCGTTCATGGGTTGACTCAGGGCATACGGAGTTCATTCCCAG
194 GGCCGGCTGAGCGCCCGC-ACGCTCGTTCGTGGGTTGACTTA-GGCATACGGAGTTCATTCCCAG
* * * * *
7974 TCTAAGCATACGGGAGTTCTTTCCCAGTCTAAGATCGGTATCGGACTGAGGGTTTGCCGACAGGA
257 TCTAAACATAC-GGAGTTCATTCCCAGTCTAAGATC-G-ATCAGACCGAGGG-TTG-CGACAGCA
* *
8039 CCATGCTGGGCTCGGGCATGTTGCTGGTTCTGCATTTTCTTCGTCGGGGCACCATTCGTCGGAGC
317 -CATGCTGGGCTCGGGCATG-TGCTGGTGCCGCATTTTCTTC-TCGGGGCACCA-TCG-CGGAGC
* *
8104 ATCGTCGAAGAACCTGACCGACGGGCATTGGGGTTCCGACGATCGGGGGACGGGGGGGGTGTGCA
377 ATCGTCGGAGAACCTGACCGAC-GGCATTGGGGTTCCGACGATCGGGGG--GGGGGGGGTGTGCG
* *
8169 CACATGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCT
439 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
8234 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
504 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
8299 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTCAACT
569 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
8364 GAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CTAAAACT
634 GAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAC-AAAACT
* * * *
8428 CCTTCCGAAAAAATTTTAAACAATCCTGAACCACAAAAAGTTTCCAAAATCATGAAAATTAGAAA
697 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* *
8493 ACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCC
762 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
8558 ATAAAAATGGCAATGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGA
827 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGA
8622 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCGGCACGCTCGT
1 TCCACGGCTTGCGCAT-CC--CTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCC-GCACGCTCGT
* * *
8687 TTCATCGGTCGGCTTAGGCATACGGAGTTCATTCCCAATCAAGATCAGACCGGACCGAGGGTTGC
62 TTCATCGGTCGGCTTAGGCATACGGAGTGCATTCCCAATCAAGATCAGACCAGACCGAGGGTGGC
* ** * * * * * *
8752 GGTATTACGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCACCCCT
127 GGCAGCACGATCGACAGCACGCAGAGGGGGACCCGACAGATCCCCGACTTGCGCAACCCGCCCCT
8817 CTGGCCGGCTGAGCGCCCGCACGCTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
192 CTGGCCGGCTGAGCGCCCGCACGCTCGT-TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
8882 GTCCAACCATATGGAGTTCATACCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACAT
256 GTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCG-ATCAGACCGAGGGTTGCGACAGCACAT
* * * *
8947 GCTGGGCTTGGGCATGTGCTGGTGCCGTA-TTTC-TCT----TCACCGA--G-GGAGCATCTTCG
320 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTCTTCTCGGGGCACC-ATCGCGGAGCATCGTCG
* * * * *
9003 GAGAACCTGACCGGCGGCATTGTGGTTTCGACGATCAGGGGGGTCGGGGGGTGTGCGCACAAGAT
384 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-GGGGGGGTGTGCGCACATGAT
* * *
9068 GTGCGATGGGTGCTGGCACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
447 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
9133 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGA
512 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
9198 AATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTT
577 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * * * * *
9263 TTGTACGTGCCAA-AAAAATTCAAGGATCATGTCTGCCAAGTTTGGGGACAAAAATCCTTTCGAA
641 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAA
* **
9327 AAAATTTTAAAAAAT-CTCGAA-TAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
706 AAAATTTTAAAAAATCCT-GAACCA-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
9390 GTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAA
769 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
9455 TGGCATTGGCACGTAGAAATATGAAGAT-ACGCCTAAACCCAGCTACCACCCTATTGA
834 TGGCATTGGCATGCAGAAATATGAAGATGTC-CCTAAACCCACCTACCACCCTATCGA
* * *
9512 TCCACGGCTTGCGCATCCCGTCACCCTGGCCGGCATAGT----GCCTGCCCGCC-CA--CTCATT
1 TCCACGGCTTGCGCATCCC-T--CTCTGGCCGGCATAGTGCCCGCCCGCCCGCCGCACGCTCGTT
* * * * * * *
9570 TCATCGATTGAG-TTAGGCAGACGGAGTTCATT-CCAAGTCCAAGATC-GAATC-GAACCAAAGG
63 TCATCGGTCG-GCTTAGGCATACGGAGTGCATTCCCAA-T-CAAGATCAG-ACCAG-ACCGAGGG
*** * * * * * * *
9631 TTATGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGGTC-GATCCCTGACTTACG-TACCTG
123 TGGCGGCAGCACGATCGACAGCACGCAGAGGGGGACCC-GACAGATCCCCGACTTGCGCAACCCG
* * * *
9694 CCCCTCTGGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCAT
187 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTCGTGGGTTGACTTAGGCATACGGAGTTCAT
9759 TCCCAGTCTAA
251 TCCCAGTCTAA
9770 GATCGGACCA
Statistics
Matches: 1796, Mismatches: 211, Indels: 115
0.85 0.10 0.05
Matches are distributed among these distances:
881 4 0.00
882 106 0.06
883 59 0.03
884 4 0.00
886 10 0.01
887 1 0.00
888 1 0.00
889 5 0.00
890 237 0.13
891 228 0.13
892 31 0.02
894 1 0.00
896 4 0.00
897 3 0.00
898 68 0.04
899 70 0.04
900 37 0.02
901 26 0.01
902 40 0.02
903 45 0.03
904 68 0.04
905 496 0.28
906 6 0.00
907 13 0.01
908 49 0.03
909 39 0.02
910 72 0.04
911 30 0.02
912 43 0.02
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (890 bp):
TCCACGGCTTGCGCATCCCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCGCACGCTCGTTTCA
TCGGTCGGCTTAGGCATACGGAGTGCATTCCCAATCAAGATCAGACCAGACCGAGGGTGGCGGCA
GCACGATCGACAGCACGCAGAGGGGGACCCGACAGATCCCCGACTTGCGCAACCCGCCCCTCTGG
CCGGCTGAGCGCCCGCACGCTCGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AACATACGGAGTTCATTCCCAGTCTAAGATCGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTCTTCTCGGGGCACCATCGCGGAGCATCGTCGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGC
CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGA
Found at i:9919 original size:159 final size:158
Alignment explanation
Indices: 9554--9929 Score: 391
Period size: 158 Copynumber: 2.4 Consensus size: 158
9544 GCATAGTGCC
* * * * * * * *
9554 TGCCCGCCCACTCATTTCATCGATTGAGTTAGGCAGACGGAGTTCATTCCAAGTCCAAGATCGAA
1 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAA
* * * *
9619 TCGAACCAAAGGTTATGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCTGACT
66 CCGAACCAAAGGTTATGACAGCAAGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCGGACT
* ** *
9684 TACGTACCTGCCCCTCTGGTCGGCTGAG
131 TACATACCCACCCCTCTGGCCGGCTGAG
** * * * * *
9712 CACCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAA
* * * * * *
9777 CC-AGACCGAGGGTTGCT-ACAGCAGGATCAATAGCATGCAGAGGGGGACCCGATCGATCCCCGG
66 CCGA-ACCAAAGGTT-ATGACAGCAAGATCAACAGCACGCAGAGGGGGACCCGATCGAT-CCCGG
* * *
9840 CCTGTGCAT-CCCACCCCTCTGGCCGGTTGAG
128 ACT-TACATACCCACCCCTCTGGCCGGCTGAG
9871 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CATAGTCTAAG
1 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-AGTCTAAG
9930 CATACAAAGT
Statistics
Matches: 175, Mismatches: 38, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 95 0.54
159 76 0.43
160 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (158 bp):
TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAA
CCGAACCAAAGGTTATGACAGCAAGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCGGACT
TACATACCCACCCCTCTGGCCGGCTGAG
Found at i:11019 original size:26 final size:26
Alignment explanation
Indices: 10989--11041 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10979 GTTGACTTAG
10989 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
11015 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
11041 G
1 G
11042 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:12108 original size:27 final size:27
Alignment explanation
Indices: 12045--12124 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
12035 TGACTTAGGC
* *
12045 CATACGGAGTTCTTTCCTAGTCTAA-G
1 CATACGGAGTTCATTCCCAGTCTAAGG
*
12071 CATACGGAGTTCATTGCCAGTCTAAGG
1 CATACGGAGTTCATTCCCAGTCTAAGG
*
12098 CATATGGAGTTCATTCCCAGTCTAAGG
1 CATACGGAGTTCATTCCCAGTCTAAGG
12125 ATCGGACTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 22 0.46
27 26 0.54
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (27 bp):
CATACGGAGTTCATTCCCAGTCTAAGG
Found at i:12352 original size:20 final size:20
Alignment explanation
Indices: 12327--12370 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
12317 TGGTACTTGG
12327 CCCTTATATTCACCCCTTAT
1 CCCTTATATTCACCCCTTAT
**
12347 CCCTTATATTTGCCCCTTAT
1 CCCTTATATTCACCCCTTAT
12367 CCCT
1 CCCT
12371 CATCAAACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.41, G:0.02, T:0.41
Consensus pattern (20 bp):
CCCTTATATTCACCCCTTAT
Found at i:13044 original size:26 final size:26
Alignment explanation
Indices: 13006--13058 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12996 TTTGACTTAG
13006 GCATAAGGAGTTCATTCACAATCTAA
1 GCATAAGGAGTTCATTCACAATCTAA
* * * *
13032 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCACAATCTAA
13058 G
1 G
13059 ATCGGATAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCACAATCTAA
Found at i:14786 original size:26 final size:26
Alignment explanation
Indices: 14757--14806 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14747 GACTTAGGCG
14757 TACGGAGTTCATTCCCAGCCTAAGCA
1 TACGGAGTTCATTCCCAGCCTAAGCA
*
14783 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGCCTAAG
14807 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGCCTAAGCA
Found at i:16282 original size:894 final size:890
Alignment explanation
Indices: 13769--16432 Score: 3970
Period size: 892 Copynumber: 3.0 Consensus size: 890
13759 ACACGCAAAA
*
13769 GGGGACCCCG-TTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-AGCTGAGTGCCCGCACGC
1 GGGGA-CCCGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGC
* * * *
13832 TCGTTTCGTGGGTTGACTTAGGCATACGGTGTTGATTCCCAGTCTAAGCATGCGAGTTCATTCCC
64 TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCC
* * * * **
13897 AGTCTAAGATCCGATCGGATTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
129 AGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
*
13962 CACATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCACCGAAGAACCTGATCGGCGGCATTGG
194 CACATTTTTCTTCACCGAGGCACCAT---C---GC--CA--GAAGAACCTGA-CGGCGGCATTGG
* * * *
14027 GGTTCTGGTGATCGAGGGGGCC-AGGGGGTGTGCGCACATGATGTGTGATGGGTG-TGGTACTTG
248 GGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
14090 GCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
313 GCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
14155 GAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
377 GAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
14220 GGTCACAAAATCTTGTACACTTCGAATTTTTTGCTGAATTTTTTTGTGCAAGCAAAAAAAAATAC
442 GGTCACAAAATCTTGTACACTTCGAATTTTTTGCTGAATTTTTTTGTGCATGCAAAAAAAAATAC
* *
14285 AAGGATCAAGTCTACCAAGTTTGGGGCCAAAATGCCTTTCAAAAAAATTTTAAAAAATCCCGAAC
507 AAGGATCACGTCTACCAAGTTTGGGGCCAAAATGCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
14350 AGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGA
572 AGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGA
*
14415 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGAAATATGA
637 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* *
14480 AGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATCCCGTCTCTCTGGCCG
702 AGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
14545 GCGTAGTGTCCGCCCGCCTGCCCGCACGCTCGTTTAGTCGGTTGGCTTAGGCATACGGAGTTCAT
767 ACGTAGTGCCCGCCCGCCCGCCCG-TCGCTCGTTCAGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
14610 TCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAG
831 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAACAAGATCGACAGCAAGTAGAG
** * * * * * ** * * *
14670 GGGGACCCGACCGATCCCCAGCTTGCGTATCCTGCCCCTCTAGCTGGGTCAGCGCCCGTAGGCTC
1 GGGGACCCGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* *
14735 GTTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCA
66 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCA
* *
14800 GTCTAAGATCGGACCAGA-CTGAGAGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
130 GTCTAAGATCAGACCAGATC-GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * * ** * *
14864 CGTATTTTTCTTCGCCGGGGCACCATCACC-GAAGAACCTGACCGGTAGAATTGGGGTTTCGGCG
194 CACATTTTTCTTCACCGAGGCACCATCGCCAGAAGAACCTGA-CGGCGGCATTGGGGTTCCGGCG
* * *
14928 ATCGGGGGGGCCGAGGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCACTTTTAT
258 ATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
14993 T-GCCACCTGTCCCTCATAAAACCTCGAGAACTAACACCCGCTTAAAGAGCATTTGAGATTTTAC
323 TGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
15057 AGGTTTGCTGCGAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
387 AGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
15122 TCTTGTACACTTCGAATTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
452 TCTTGTACACTTCGAATTTTTTGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACG
*
15187 TCTACCAAGTTTGGGGCCAAAATGCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGT
517 TCTACCAAGTTTGGGGCCAAAATGCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGT
15252 TTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
15317 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * * *
15382 AAACCAACCTACCACCCTATCGATCCACGACTTGTGCATCCCGCCTCTTTGGCCGACGTAGTACC
712 AAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
*
15447 CGCCCGCCCGCCCGTCGCTCGTTCAGTCGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCTAA
777 CGCCCGCCCGCCCGTCGCTCGTTCAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15512 GATCAGACCAAACTGAGGGTTGCGGCAACAAGATCGACAGCAAGTAGAG
842 GATCAGACCAGACCGAGGGTTGCGGCAACAAGATCGACAGCAAGTAGAG
* * * * *
15561 GGGGACCCGATTAATCCCCGGTTTACGCATCCCGCCCCTTTGGCCGACTGAGCGCCCGCACGCTT
1 GGGGACCCGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
* * * * * *
15626 GTTTTGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCCTACCAGTTCTTTCCTAG
66 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAG
*
15691 TCTAAGATCAGACCAAATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
131 TCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
*
15756 CATTTTTCTTCACCGAGGCACCATCGCCAG-AGAACCTGACAGGCGGCATTTGGGTTCCGGCGAT
196 CATTTTTCTTCACCGAGGCACCATCGCCAGAAGAACCTGAC-GGCGGCATTGGGGTTCCGGCGAT
* * * *
15820 CGGGGGGGCCCGGGGGGGTGTGTGCCCATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATT
260 CGGGGGGG-CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
15885 GGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
324 GGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
15950 GGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
16015 CTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCAAAAAAAAAAATACAAGGATCAC
453 CTTGTACACTTCGAATTTTTTGCTGAATTTTTTTGTGCATGC--AAAAAAAAATACAAGGATCAC
*
16080 GTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAA
516 GTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAA
** * * *
16144 GTTTTGAAAATCGTGAAAAATAGAAAACGAGTCTTCTTGCCATGAAGA-TTCACGTGAATGCTTA
580 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAA-ACTTCACGTGAAGGCTTA
*
16208 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTG
644 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * * *
16273 CCAAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCAATGTAGT
709 CCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* *
16338 GCCCGCCTG-CC-CAC-TCGCTCGTTTCA-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
774 GCCCGCCCGCCCGCCCGTCGCTCG-TTCAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* *
16399 CTAAGATCGGATCAGACCGAGGGTTGCGGCAACA
838 CTAAGATCAGACCAGACCGAGGGTTGCGGCAACA
16433 CAAGCTGGGC
Statistics
Matches: 1587, Mismatches: 158, Indels: 46
0.89 0.09 0.03
Matches are distributed among these distances:
889 1 0.00
890 129 0.08
891 348 0.22
892 635 0.40
893 19 0.01
894 266 0.17
895 2 0.00
896 1 0.00
899 1 0.00
900 4 0.00
901 91 0.06
902 90 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GGGGACCCGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAG
TCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
CATTTTTCTTCACCGAGGCACCATCGCCAGAAGAACCTGACGGCGGCATTGGGGTTCCGGCGATC
GGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAATTTTTTGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAATGCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
CGCCCGCCCGTCGCTCGTTCAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCAGACCGAGGGTTGCGGCAACAAGATCGACAGCAAGTAGAG
Found at i:17288 original size:25 final size:26
Alignment explanation
Indices: 17251--17302 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17241 GTTGATTTAG
17251 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
17277 GCATAC-GAGTTCTTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17302 G
1 G
17303 TTCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18008 original size:25 final size:26
Alignment explanation
Indices: 17980--18029 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17970 GTTGGCTTAG
17980 GCATACGGAG-TCATTCCCAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
18005 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
18030 AGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:19641 original size:27 final size:26
Alignment explanation
Indices: 19611--19667 Score: 105
Period size: 27 Copynumber: 2.2 Consensus size: 26
19601 TCGGTTGGCT
19611 TAAGCATACGGAGTTCATTCCCAAGTC
1 TAAGCATACGGAGTTCATTCCC-AGTC
19638 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
19664 TAAG
1 TAAG
19668 ATCTGACCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:20387 original size:26 final size:26
Alignment explanation
Indices: 20357--20409 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20347 GTTGGCTTAG
20357 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20383 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20409 G
1 G
20410 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20448 original size:742 final size:739
Alignment explanation
Indices: 18859--21118 Score: 3325
Period size: 742 Copynumber: 3.1 Consensus size: 739
18849 AGCGCCCGCA
* * * * * *
18859 CGCTTGTTTCAT-GTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCGAGGCATACAGAGTTCA
1 CGCTCGTTTCATCG-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * * *
18923 TTTCCTAGTCCAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGTTCGAGCATGTGC
65 -TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGC
** ** * ** *
18988 TGGTGCCACATTTTTCTTCGCCGAGG-CACCA---TC--A-C--C--AGAGAACCTGACAAGCCG
129 TGGTGCCGTATTTTTCTTCATCG-GGTCACCATCGTCGGAGCATCGTCGAGAACCTGACCGGCAG
* * * * * *
19042 TATTGGGGTTCCGACGATCGGGGGGGCCCGGGGGGGTGTGTGCCCATGATGTGCGATGGGTGCTG
193 CATTTGGGTTTCGACGATCAGGGTGG-CCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTG
* * *
19107 GTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
257 GAACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * * *
19172 AGCATTTGAGATTTTATAGGTTTGCTACCAGTGGCCATTAAAGTGTCTGAAATGGGGATACTTTT
322 AGCATTTGAGATTTTACAGGTTTTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
19237 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATATTTTTGTGCATG-CAAAA
387 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAA
*
19301 AAAAATACAAGGATCACGTCTACC-AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
452 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAA
19365 TCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGAT
517 TCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG-AAACGAGTCGTCTTGCCATGAAGAT
* **
19430 TCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGTTACGTAG
581 TCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
*
19495 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
646 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT-CCGTCTC
19560 TCTGGCCAGCGTAGTGCCCGCCCGCCCACT
710 TCTGGCCAGCGTAGTGCCCGCCCGCCCACT
*
19590 CGCTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCAAGTCTAAGCATACGGAGTTCA
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCA
* * *
19655 TTCCCAGTCTAAGATCTGACCAGACCGAGGGTTACGGCAACACAAGCTGGGCTAGAGCTTGTGCT
65 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCT
19720 GGTGCCGTATTTTTCTTCATCGGGTCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCAGC
130 GGTGCCGTATTTTTCTTCATCGGGTCACCATCGTCGGAGCATCGTC-GAGAACCTGACCGGCAGC
**
19785 ATTTGGGTTTCGACGATCAGGGTGGCC-GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGA
194 ATTTGGGTTTCGACGATCAGGGTGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGA
*
19849 ACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACC-CAAGAACTCACACCCCCTTAAAGAG
259 ACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
19913 CATTTTGAGATTTTACAGGTTTTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
324 CA-TTTGAGATTTTACAGGTTTTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
19978 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAA
388 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAA
20043 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAAT
453 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAAT
** *
20108 CTAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGCAAACGAGTCGTGTTGCCCATGAAGAT
518 CCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG-AAACGAGTCGTCTTG-CCATGAAGAT
20173 TCACGTG-ATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
581 TCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
*
20237 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGTGCATCCTGTCT
646 -AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCC-GTCT
20302 CTCTGGCCAGCGTAGTGCCCGCCCGCCCACT
709 CTCTGGCCAGCGTAGTGCCCGCCCGCCCACT
*
20333 GGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
20398 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTCCTG
66 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTG
* *
20463 GTGCCGTATTTTTCTTCATCAGGTCACCATCGCCGGAGCATCGTCGAG-ACCTGACCGGCAGCAT
131 GTGCCGTATTTTTCTTCATCGGGTCACCATCGTCGGAGCATCGTCGAGAACCTGACCGGCAGCAT
*
20527 TTGGGTTTCGACGATCAGGGTGGCCGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGAAC
196 TTGGGTTTCGACGATCAGGGTGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGAAC
20592 TTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
261 TTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
20657 TTTGAGATTTTACAGGTTTTCTGCCTGTAGCCATTAAAGTATCTGAAATGGGGACACCTTTTTCA
326 TTTGAGATTTTACAGGTTTTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
20722 AATGGTCACAAAATCTTGT-CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC---ACAAA
391 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAA
* * * **
20783 ATACAAGGATCACGTCAATCAAGTTT-GGGCCAAAAATAT-TTCTGAAAAAATTTTAAAAAATCC
456 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-TCTTCCAAAAAAATTTTAAAAAATCC
* * * *
20846 CGAACCGCAAAACGTTTCGAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAA-ACTTC
520 CGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA-AACGAGTCGTCTTGCCATGAAGA-TTC
* * * *
20910 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAACT-GCATTGGCATGCAGA
583 ACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCACGTAGA
* * * *
20974 AATAGGAAGATGTGCCTAAACCCACCTACCACCTTATCGATACACGGCTTGCT-TATCCGATCTC
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-TGCATCCG-TCTC
* * * *
21038 TCTCGCC-GACGTAGTGCCCACCCGCCCGCC
710 TCTGGCCAG-CGTAGTGCCCGCCCGCCCACT
* ** * *
21068 CGCTCATTTTGTCGGTTGGCTTAGGCAAATGGAGTTCATTCCCAGTCTAAG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
21119 ATTGGATTGG
Statistics
Matches: 1395, Mismatches: 104, Indels: 56
0.90 0.07 0.04
Matches are distributed among these distances:
730 2 0.00
731 115 0.08
732 19 0.01
734 5 0.00
735 141 0.10
736 128 0.09
737 31 0.02
739 27 0.02
740 258 0.18
741 189 0.14
742 332 0.24
743 148 0.11
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (739 bp):
CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTG
GTGCCGTATTTTTCTTCATCGGGTCACCATCGTCGGAGCATCGTCGAGAACCTGACCGGCAGCAT
TTGGGTTTCGACGATCAGGGTGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGAAC
TTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAATCCC
GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAACGAGTCGTCTTGCCATGAAGATTCACG
TGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCGTCTCTCTGGC
CAGCGTAGTGCCCGCCCGCCCACT
Found at i:21286 original size:26 final size:26
Alignment explanation
Indices: 21250--21302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21240 GTTGACCTAG
*
21250 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
21276 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
21302 G
1 G
21303 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:22173 original size:26 final size:25
Alignment explanation
Indices: 22137--22188 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
22127 GTTGACTTAG
*
22137 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
*
22163 GCATATGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
22188 G
1 G
22189 ATCAGGTGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:23066 original size:28 final size:28
Alignment explanation
Indices: 23035--23090 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
23025 GTTGACTTAG
23035 GCATAACGCAATTCATT-CCCAGTCCTAA
1 GCAT-ACGCAATTCATTCCCCAGTCCTAA
* * *
23063 GCATATGGAGTTCATTCCCCAGTCCTAA
1 GCATACGCAATTCATTCCCCAGTCCTAA
23091 AATCAGACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
GCATACGCAATTCATTCCCCAGTCCTAA
Done.