genome.fa.s473.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168298.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_524, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23940

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387--432	14	2.7	19	75	25	57	45	0	2	52	1.13
417--458	13	3.3	13	84	12	52	42	0	0	57	0.99
387--457	33	2.1	33	82	7	81	45	0	1	53	1.09
620--653	17	1.9	17	88	5	50	50	5	2	41	1.42
900--954	26	2.1	26	83	6	67	50	5	1	41	1.36
917--972	29	1.9	29	82	13	71	53	1	0	44	1.11
1415--1481	7	9.1	8	76	16	58	53	0	1	44	1.09
1415--1479	15	4.5	14	78	19	64	53	0	1	44	1.09
1416--1489	28	2.7	28	78	19	84	52	0	1	45	1.09
1422--1481	14	4.0	16	80	12	74	53	0	1	45	1.10
1577--1637	25	2.5	24	84	12	79	49	0	1	49	1.10
1851--1974	13	9.8	13	66	18	57	48	3	3	45	1.34
1934--1980	14	3.6	13	75	18	53	51	0	0	48	1.00
1935--1991	25	2.3	25	85	11	82	50	0	0	49	1.00
1897--1980	39	2.2	38	83	12	100	48	1	1	48	1.16
2861--2899	19	2.1	19	95	0	69	56	2	0	41	1.13
3741--3806	10	6.2	10	75	18	62	50	0	3	46	1.16
4263--4322	10	6.0	10	77	11	61	51	3	1	43	1.28
4275--4322	21	2.3	21	89	7	71	54	4	2	39	1.32
4379--4419	19	2.1	20	82	13	50	39	2	7	51	1.43
4680--4769	6	15.7	6	69	23	52	52	0	2	45	1.13
4675--4769	18	5.5	17	73	17	63	51	0	2	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4716--4766	21	2.4	21	83	0	66	50	0	1	47	1.12
5120--5158	16	2.4	16	86	4	51	35	0	2	61	1.10
5133--5170	16	2.2	18	90	9	62	36	0	2	60	1.11
5231--5290	15	3.8	16	77	18	63	48	0	3	48	1.18
5232--5303	15	4.9	14	74	17	56	47	0	2	50	1.15
5485--5537	23	2.4	22	81	9	63	45	0	3	50	1.19
5639--5669	15	2.0	16	93	6	55	45	6	3	45	1.45
6232--6277	24	2.0	23	86	4	65	52	4	2	41	1.33
6983--7053	19	3.2	23	69	25	71	43	1	5	49	1.35
8797--8836	21	1.9	21	85	10	55	32	5	0	62	1.17
9014--9056	17	2.5	17	84	3	59	46	4	6	41	1.51
10247--10292	14	2.7	19	75	25	57	45	0	2	52	1.13
10277--10318	13	3.3	13	84	12	52	42	0	0	57	0.99
10247--10317	33	2.1	33	82	7	81	45	0	1	53	1.09
10480--10513	17	1.9	17	88	5	50	50	5	2	41	1.42
10685--10751	29	2.4	26	75	22	64	49	1	2	46	1.26
10760--10814	26	2.1	26	83	6	67	50	5	1	41	1.36
10777--10832	29	1.9	29	82	13	71	53	1	0	44	1.11
11273--11338	15	4.3	15	81	12	73	56	0	1	42	1.08
11300--11350	16	3.1	16	80	8	59	54	0	0	45	0.99
11273--11349	23	3.3	23	76	21	79	55	0	1	42	1.07
11437--11491	25	2.2	25	87	6	76	49	0	1	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11437--11506	26	2.6	28	78	13	85	47	1	1	50	1.19
11713--11836	13	9.8	13	66	18	57	48	3	3	45	1.34
11796--11842	14	3.6	13	75	18	53	51	0	0	48	1.00
11797--11853	25	2.3	25	85	11	82	50	0	0	49	1.00
11759--11842	39	2.2	38	83	12	100	48	1	1	48	1.16
12242--12285	22	2.0	23	86	13	65	45	2	2	50	1.27
12721--12759	19	2.1	19	95	0	69	56	2	0	41	1.13
12730--12772	14	2.9	15	80	13	54	53	0	0	46	1.00
13601--13666	10	6.2	10	75	18	62	50	0	3	46	1.16
14123--14182	10	6.0	10	77	11	61	51	3	1	43	1.28
14135--14182	21	2.3	21	89	7	71	54	4	2	39	1.32
14239--14279	19	2.1	20	82	13	50	39	2	7	51	1.43
14542--14631	6	15.7	6	69	23	52	52	0	2	45	1.13
14537--14631	18	5.5	17	73	17	63	51	0	2	46	1.12
14578--14628	21	2.4	21	83	0	66	50	0	1	47	1.12
14983--15021	16	2.4	16	86	4	51	35	0	2	61	1.10
14996--15033	16	2.2	18	90	9	62	36	0	2	60	1.11
15094--15153	15	3.8	16	77	18	63	48	0	3	48	1.18
15095--15165	15	4.8	14	74	17	54	47	0	2	49	1.16
15349--15401	23	2.4	22	81	9	63	45	0	3	50	1.19
15503--15533	15	2.0	16	93	6	55	45	6	3	45	1.45
16099--16144	24	2.0	23	86	4	65	52	4	2	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16850--16920	19	3.2	23	69	25	71	43	1	5	49	1.35
18664--18703	21	1.9	21	85	10	55	32	5	0	62	1.17
18881--18923	17	2.5	17	84	3	59	46	4	6	41	1.51
20101--20164	31	2.1	31	82	5	76	46	0	4	48	1.23
20313--20363	27	1.9	26	84	11	68	50	1	1	45	1.24
20664--20718	26	2.1	26	83	6	67	50	5	1	41	1.36
20681--20736	29	1.9	29	82	13	71	53	1	0	44	1.11
21176--21241	15	4.3	15	81	12	73	56	0	1	42	1.08
21203--21253	16	3.1	16	80	8	59	54	0	0	45	0.99
21176--21252	23	3.3	23	76	21	79	55	0	1	42	1.07
21339--21400	25	2.4	25	83	2	79	46	1	1	50	1.20
21889--21930	16	2.5	17	80	7	50	40	4	0	54	1.21
22816--22859	19	2.4	18	82	14	54	43	2	2	52	1.26
23410--23443	15	2.3	15	90	5	52	44	0	0	55	0.99

Tables:   1

The End!