Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168299.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_525, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23928
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Found at i:3201 original size:26 final size:26
Alignment explanation
Indices: 3165--3217 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3155 CCACTTTGAT
3165 CTTACACTGGGAAAGAACTCCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
* * *
3191 CTTAGACTGGGAATGATCTCCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
3217 C
1 C
3218 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAAAGAACTCCGTATG
Found at i:4356 original size:895 final size:893
Alignment explanation
Indices: 1--6975 Score: 8372
Period size: 895 Copynumber: 7.9 Consensus size: 893
* *
1 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACT-TTTTTCT
1 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
65 ATTTTTCACGATTTTTAAAACTTTTTACGATTC-GAGATTTTTTTAAAATTTTTTCAGAAGGAGC
66 ATTTTTCACGATTTTTGAAACTTTTTACGATTCAG-GATTTTTTT-AAATTTTTTCAGAAGGAGT
** * *
129 TTTCACCCCAGACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
129 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * * * *
194 AAAAACTCGAAGTGTACATGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAAACATTTTA
194 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
259 ATGGCTACTGGCAGCAAACCAGTAAAATCTCATATGCTCTATAAGGGGGTGTGAGTTCTCGAGGT
259 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * *
324 CTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCATACATCATGTGCGCA
324 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACA
* * * * * * **
389 CACCCCCCGTCCCCCTCCATCGTCGGAACCCCAATGTCACCGGTCAGGTTCTCCGGCGATGCTAT
389 CA-CCCCC-ACCCCC-CAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC
* * * *
454 GGCGGTGGTGCCCTGGGCG-AAAAAAAT-CTGGCACCAGCACATGCCCGAGCCCAACATGTGCAC
451 GACGATGGTGCCCCGGGCGAAAAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCAC
* **
517 CCACAACCCTCGGTCTA----G----T-C-C---G-AT---CT---TA--C----ACTGGGAATG
515 TCGTAACCCTCGGTCTAGTTCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * *
556 AACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
580 AACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAA
* * * * * * *
621 GATGCGCAAGCCGAGGATCGACTGGGTCTCCCCCTGCATGCTGCCGATCCTGTTGTCACAACCCT
645 GATGCGCAAGCCGGGGATCGACCGGGTC-CCCCCTGCGTGCTGCTGATCCTGCTGCCGCAACCCT
** ** * * * * *
686 TTGTTTGGTATGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCA
709 CAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * ** * * * ** * *
751 GGCAGGTGGGTAGGACACCAGCCAGAGAGGCGTGATGCATAAGCTGTGGATCGATGGGGTGGTAG
774 GGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
**
816 GTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAACCCATTTTTATGGCTT
839 GTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* * *
871 GTAAATTCAAACAATGGACCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCT
1 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
936 ATTTTTCACAATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGTAGGAGTT
66 ATTTTTCACGATTTTTGAAACTTTTTACGATTCAGGATTTTTTT-AAATTTTTTCAGAAGGAGTT
* * * *
1001 TT-GCCCCAAACTTGGTAGCCGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAATTTCAGCTA
130 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
*
1065 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-AAACTTTAA
195 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
1129 TGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGGT
260 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
1194 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCATATCATGTGCGCAC
325 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACAC
* * * ** * * *
1259 ACCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCATCGGTCAGGTTCT-CGGACGATGCTTCA
390 A-CCCCC-ACCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGG-TGATGCTCCG
* * * * * * * * *
1323 ACCATAGTGCCCGGGGTG-AAAAGAATGAGGCACCAGCACATGCTC-AACCCAGCATGTGCACCC
452 ACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTC
* * * *
1386 G-AAACC-C--T-T-G---G----T-C-C---G---G---TCCG-AT-CTTACATTGGGAATTAA
517 GTAACCCTCGGTCTAGTTCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
1425 CTTCGTATGCCTAAGTCAACCCAC-AAATGAGCATGCGGGCACTCAGTCGGCCAGAGGGGCAGGA
582 CTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGA
* * * * * * *
1489 TGTGCAAGCCGAGGATCGATCGGGTCCCCCCCTGTGTGCT-TTCGATCCTACTGCCACAACCCTC
647 TGCGCAAGCCGGGGATCGACCGGGT-CCCCCCTGCGTGCTGCT-GATCCTGCTGCCGCAACCCTC
* * * *
1553 AGTCCGGTCCAATCTTAGACTAGGAATTAACTCCGCATGCCTAAGCCAACCGACGAAACGAGC-G
710 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
*
1617 G-AGGGCGGGCACTAC-TCGGCCAGAGAGGCGGGATGCGCAAGGCCGTGGGATCGATTAGGGTTG
775 GCA-GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA-GCCGT-GGATCGA-TAGGG-TG
1680 GTAGGTTGGGTTTAAGGC-CATCTTCATTATTTCTGCCATG-CAATGCCATTTTTAATGGCTT
835 GTAGG-TGGGTTT-AGGCACATCTTCA-TATTTCTGCCATGCCAATGCCATTTTT-ATGGCTT
* *
1741 GTAAAATTCATAC-ATGGTCCCTTAA-CCTTCATGTGAAAGTTTCAATGGCAAGATTGACTCATT
1 GT-AAATTCATACAATGGTCCCTTAAGCCTTCATGTG-AAGTTTC-ATGGCAAGA-CGACTCGTT
* * * *
1804 TTCTATTTTTCACGATTTTCGAAACTTTTTTCGGTTCAGGATTTTTTTTAAGATTTCTTCAGAAG
62 TTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCAGGA-TTTTTTTAA-ATTTTTTCAGAAG
* * * *
1869 GTGTTTTGGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTC
125 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
* *
1934 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGAGCATTTGAGAAAAGTGTCCCCATTTCAGACAC
190 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
1999 TTTAATGGCTACTAGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
255 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
2064 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTG
320 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA--TG
* * * * * *
2129 TGCACAC-CCCCCACCCCCCAATCGCCGAAACCCTACTGCCGTCGATCAGGTTCTCCGGCGATGC
383 TGCACACACCCCCACCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGC
* * *
2193 TCCGACGATGGTGCCTCGGGTGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
448 TCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * ** * *
2258 A-TCCCTAACCCTCGGTCT-GGTCTGATCTTATGCTGGGAATGAACTCCGTATGCTTAGATTGGA
513 ACT-CGTAACCCTCGGTCTAGTTC-GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGG
* *
2321 AATG-ACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCGACCAGAGGG
576 AATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * ** * *
2385 GCAAGATGCGCAAGTCGGGGATC-AGCTGGGTCCCCCCCTACGTGCTACCAATCTTGCTACCGCA
641 GCAAGATGCGCAAGCCGGGGATCGA-CCGGGT-CCCCCCTGCGTGCTGCTGATCCTGCTGCCGCA
* * * * *
2449 ACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAAGCCAACTGACGAAAC
704 ACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
** * * * *
2514 GAGCTAGCGGGCGGCCACTATGCCGGCCAGAGAGGCGGCATGCGCAAGCCGTGGATCGATAGGGT
769 GAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
2579 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
834 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
2639 GTAAATTCATACAATGGTCCC-TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
1 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
2703 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTTTCAAAAGGAGTTT
66 ATTTTTCACGATTTTTGAAACTTTTTACGATTCAGGATTTTTTTAAATTTTTTCAGAAGGAGTTT
* * * * * * *
2768 TGGCCCCACACTTCGTAGACTTCATCCTTGTATTTTTGTTGGCATGCCCAAAACAATTCAGCTAA
131 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* *
2833 AAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAAT
196 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
2898 GGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTT
261 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
2962 GATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA
326 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACA
* * ** *
3027 CCCTCCACCCCCTCAATCATCGGAACCCCAATGCCATCGGTCAGATTCTCC----A-------AC
391 CCC-CCACCCCC-CAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGAC
** * * * *
3081 GATGGTGCCCCTAGCG-AAAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTTCACCCGT
454 GATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGT
* * * * * * *
3145 AATCCTTGGTCCACTTTGATCTTACACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGATCT
519 AACCCTCGGTCTAGTTCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** * *
3210 CCGTATGCCTAAGTCAACGTACAAAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGCAAGATG
584 CCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATG
* * * * ** * * * *
3275 CGTAAGTCGGGGATAGGCCACGTCCCCCTCTGCATGCTG-TCGATCCTGCTGTCGTAACCCAT-G
649 CGCAAGCCGGGGATCGACCGGGTCCCCC-CTGCGTGCTGCT-GATCCTGCTGCCGCAACCC-TCA
* * * *
3338 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGA
711 GTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * * * * * *
3403 CGGGCGAGCACTATGTCGACTAGAGAAGCGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGT
776 CAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * * **
3468 GCGTTTAGGCATATCATCCTATTTTTGCTGTGCCAATGCCATTTTTATGGCTT
841 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* *
3521 CTAAATTCATACAATGGTCCCTTAAGCCTTCATGTCAAGTTTCATGGCAAGACGACTCGTTTTCT
1 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
3586 ATTTTTCATGATTTTCGAAACTTTTTACGATTCAGGATTTTTTTAAATTTTTTTAGAAGGAGTTT
66 ATTTTTCACGATTTTTGAAACTTTTTACGATTCAGGATTTTTTTAAATTTTTTCAGAAGGAGTTT
** * * *
3651 TGGCCTGACACTTGGTAGATGTGATCCTTGTATTTTTTTTTTTGCATGCACAAAAAAATTCAGCT
131 TGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTTTTGGCATGCACAAAAAAATTCAGCT
* *
3716 AAAAACTCGAAGTGTACAGGA-TTTGTGAGCATTTGAAAAAATTGTCCCCATTTCAGACACTTTA
194 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
3780 ATGGCTACCGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGACGT
259 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
3845 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACA
324 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACA
* * * * *
3910 CACCCCCTTCCCCCCAATCGTCGGAACCCTAGTGCCGCCAGTCTGGTTCTTCGGTGATGCTCC-A
389 CACCCCC-ACCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGA
* * *
3974 GCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGACCAGCTTGTGCACTC
453 -CGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTC
* * * * * * * *
4039 GAAACCCTTGTTCTAGTTCGATCTTACACTGAGAATGAACTCTGTATGCTTAGAGTGGGGATGAG
517 GTAACCCTCGGTCTAGTTCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* ** * ** *
4104 CTTCGTATGAATAAGTCAACCCACGAAATGAGCGTGCAAGCGCTCAGCCGGCCAGAGGGGCAGGA
582 CTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGA
* * ** * *
4169 TGCGCAAGCCGGGGATCGACCGGGTCCCCCCTGCATGCTGCTGATCTTGCTGTTGTAACCCTCAT
647 TGCGCAAGCCGGGGATCGACCGGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCAG
* * * * *
4234 TTCGGTCTGATCTTCGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACTAAACGAGCGGGC
712 TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
*
4299 AGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
777 AGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
4364 TGTTTAGGCACATCTTCATATTTCTACCATACCAATGCCATTTTTATGGCTT
842 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* *
4416 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCGAGACAACTCGTTTTCT
1 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** *
4481 ATTTTTCACAATTTTTGAAACTTTTTAC-AGTTTGGGATTTTTTTTAAATTTTTTCAGAAGGATT
66 ATTTTTCACGATTTTTGAAACTTTTTACGA-TTCAGGA-TTTTTTTAAATTTTTTCAGAAGGAGT
* *
4545 TTTGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTT-GCATGCACAAAAAAATTCAGCT
129 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * * * *
4609 AAAAACTCGAAGTGTACAAGATTCTATGACCATTTGAGAAAAGTGTCCCCATTTTAGACACTTTA
194 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
4674 ATGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGT
259 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
4739 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACGCATCGCACATCATGTGCGCA
324 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT--GCA
* * * *
4804 CACCCCCCCGCCCCCCAATCGTCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG
387 CACACCCCCACCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCG
* **
4869 ACGATGGCGCCTTGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAC-
452 ACGATGGTGCCCCGGGCG-AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACT
* * * * * *
4933 CTGCAACCCTTGGTCTGGTCCGATCTTACACTGAGAATGAACTCCGTATGCTTAGACTGAGAATG
516 C-GTAACCCTCGGTCTAGTTCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * ** *
4998 AACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCACTCAGCAAGCCAGAGGGGCAG
580 AACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAA
* *** * * ***
5063 GATGCACAAGCCGGGGATCGGTTGGGT-CCCCCTGCGTGCTGCCGATCCTACTATTGCAACCCTC
645 GATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTC
* * * * * * *
5127 GGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGGCAACTGACGAAACGAACGG
710 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * *
5192 GCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGATAGG
775 GCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
5257 TGGGTTTAGGCACATCTTCTTATTTCTACCATGCCGATGCCATTTTTATGGCTT
840 TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
*
5311 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAACACGACTCGTTTTCT
1 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * * *
5376 ATTTTTCATGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTTAAAAGTTTTTCAAAAGGAGTT
66 ATTTTTCACGATTTTTGAAACTTTTTACGATTCAGGATTTTTTT-AAATTTTTTCAGAAGGAGTT
*
5441 TTGGCCCCAAACTAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
130 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* **
5506 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTGGACACTTTAA
195 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
5571 TGGCTACTGGCAGAAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
260 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
5636 TGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCACACATCATGTGCGCAC
325 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACAC
* **
5701 ACCCCCCGCCCCCCCAATCG-CGGGAAACCC-AATGCCGTGGGTCAGGTTCTCCGGTGATGCTCC
390 A-CCCCC-ACCCCCCAATCGTC-GG-AACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC
* ** * * * *
5764 GACGATGGTGCCCCGGGCGAAAAAAAATGTGAAACCGGCACATGCTCGAGTCCAGTATGTGCA-T
451 GACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACT
* * * ** * * *
5828 CCGTAACACTCGATCCAGTTCGATAATACACTGGGAGTGAACTCTGTATGCTTACACTGGGAATG
516 -CGTAACCCTCGGTCTAGTTCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * ** * *
5893 AACTCCGTATGCCTAGGTC-A-CCACGAAATGAGCGTGCGGGCGCTCAGCCGATCAAAGGGG-TA
580 AACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAA
* * * * * *
5955 GATGCGCAAGCCGGGGATCGACCGGTTCTGCCCCTACGTGCTGCCGATCCTGCTGCCACAACCTT
645 GATGCGCAAGCCGGGGATCGACCGGGTC-CCCCCTGCGTGCTGCTGATCCTGCTGCCGCAACCCT
* * * * *
6020 CAATCCGGTCCAATCTTAGACTAGGATTGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCG
709 CAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * *
6085 GGCAGGCGAGCACTACGCTGGCCAGAGAGGCGGGGTGCGCAAGCTGTGGATCGATAGGTTGGTAG
774 GGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
6150 GTGGGTTTTGGCAAATCTTCATATTTCTGTCATACCAATGCCATTTTTATGGCTT
839 GTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
*
6205 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCT
1 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* **
6270 ATTTTTCACGATTTTT-AAGACTTTTTAC-AGTTC-GAGATTTTTTAAAATTTTTTTCAGAATTA
66 ATTTTTCACGATTTTTGAA-ACTTTTTACGA-TTCAG-GATTTTTTTAAA-TTTTTTCAGAAGGA
* * *
6332 GTTTTGGCCCCAAACTTGGTAGATGTGATACTTGTATTTTTATTGGCATGCACAAAAAAATTCAG
127 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
6397 CTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAAGTGTCCCTATTTCAGACACT
192 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACT
* * *
6462 TTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCTA
256 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
6527 GGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCTATCACACATCATGTGC
321 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* ** * ** ** *
6592 GCACACCCCCCACCCCCCAATTATCGGAACCCCAATGCTACCGGTCAGGTTCTCTAGCGATGCTC
386 ACACA-CCCCCACCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTC
* * * * **
6657 TGGCGATGCTGCCCGGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAATATGTGCAC
450 CGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAC
* * * * *
6722 CCATAACCCTCGGTC-CGATCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
515 TCGTAACCCTCGGTCTAGTTC-GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * ** * *
6786 GAACTCCGAATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTTGGCTAGAGGGACA
579 GAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA
* * * * *
6851 AGATGCGCAAGCCGGGGATC-AGCTGGGTCCCCCCTGCATGCTG-TCAATCCTACTGCCACAACC
644 AGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCCTGCGTGCTGCT-GATCCTGCTGCCGCAACC
** *
6914 CTTGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
707 CTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
6976 AAGCCCAGGG
Statistics
Matches: 5285, Mismatches: 683, Indels: 248
0.85 0.11 0.04
Matches are distributed among these distances:
860 1 0.00
862 7 0.00
863 2 0.00
864 21 0.00
865 15 0.00
866 151 0.03
867 56 0.01
868 81 0.02
869 174 0.03
870 205 0.04
871 84 0.02
872 46 0.01
873 24 0.00
874 168 0.03
875 154 0.03
876 15 0.00
877 12 0.00
878 1 0.00
880 1 0.00
881 96 0.02
882 289 0.05
883 128 0.02
884 112 0.02
885 138 0.03
888 1 0.00
889 2 0.00
890 9 0.00
891 4 0.00
892 105 0.02
893 292 0.06
894 731 0.14
895 1008 0.19
896 789 0.15
897 51 0.01
898 44 0.01
899 28 0.01
900 11 0.00
901 32 0.01
902 158 0.03
903 16 0.00
904 23 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGATTCAGGATTTTTTTAAATTTTTTCAGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACA
CCCCCACCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGA
TGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGTAA
CCCTCGGTCTAGTTCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCG
CAAGCCGGGGATCGACCGGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCAGTCCG
GTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGC
GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
Found at i:4986 original size:26 final size:26
Alignment explanation
Indices: 4957--5009 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4947 CTGGTCCGAT
4957 CTTACACTGAGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
*
4983 CTTAGACTGAGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
5009 C
1 C
5010 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGTATG
Found at i:5894 original size:26 final size:26
Alignment explanation
Indices: 5854--5904 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5844 AGTTCGATAA
* *
5854 TACACTGGGAGTGAACTCTGTATGCT
1 TACACTGGGAATGAACTCCGTATGCT
5880 TACACTGGGAATGAACTCCGTATGC
1 TACACTGGGAATGAACTCCGTATGC
5905 CTAGGTCACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
TACACTGGGAATGAACTCCGTATGCT
Found at i:7245 original size:311 final size:311
Alignment explanation
Indices: 6677--7288 Score: 805
Period size: 311 Copynumber: 2.0 Consensus size: 311
6667 GCCCGGGGCG
* * * *
6677 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAATATGTGCACCCATAACCCTCGGTCCGATC
1 AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAACATATGCACCCACAACCCTCGGTCCGATC
6742 TGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGAATGCCTAAGTCA
66 TGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGAATGCCTAAGTCA
* * ** * * *
6807 ACCCACAAAACGAGCGTGCGGGCGCTCAGTTGGCTAGAGGGACAAGATGCGCAAGCCGGGGATCA
131 ACCCACAAAACGAGCGTGCAGGCACTCAGCCGACCAGAGGGACAAGATGCGCAAGCCAGGGATCA
* * * * * *
6872 GCTGGGTCCCCCCTGCATGCTGTCAATCCTACTGCCACAACCCTTGGTCCGGTCTAATCTTAGAC
196 GCCGAGTCCCCCCTGCATGCTGCCAATCCTACCGCCACAACCCTCGGTCCGGTATAATCTTAGAC
*
6937 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCCCAGGGTA
261 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCCCAGGGTA
* * ** *
6988 AAAAAAAATACGGCACCAGCACATGCCTGAGTCCAACATATGCACCTGCAACCTTCGGTCCGATC
1 AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAACATATGCACCCACAACCCTCGGTCCGATC
* * *
7053 TGATTTTACACTGGTAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
66 TGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGAATGCCTAAGTCA
* * * * ** * * *
7118 ACCCATAAAATGAGTGTGCAGGCACTCGGCCGACCAGAGGGGTAGGATGTGTAAGCCAGGGATC-
131 ACCCACAAAACGAGCGTGCAGGCACTCAGCCGACCAGAGGGACAAGATGCGCAAGCCAGGGATCA
* * * * * * *
7182 GACCGAGTCCCCCCCTGCGTGCTGCCAATCTTGCCGTCGCAA-CCTCGGTCTGGTATGATCTTAG
196 G-CCGAGT-CCCCCCTGCATGCTGCCAATCCTACCGCCACAACCCTCGGTCCGGTATAATCTTAG
*
7246 ATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAA
259 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAA
7289 CTGGGCTGGC
Statistics
Matches: 256, Mismatches: 43, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
310 1 0.00
311 229 0.89
312 26 0.10
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (311 bp):
AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAACATATGCACCCACAACCCTCGGTCCGATC
TGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGAATGCCTAAGTCA
ACCCACAAAACGAGCGTGCAGGCACTCAGCCGACCAGAGGGACAAGATGCGCAAGCCAGGGATCA
GCCGAGTCCCCCCTGCATGCTGCCAATCCTACCGCCACAACCCTCGGTCCGGTATAATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCCCAGGGTA
Found at i:15675 original size:26 final size:26
Alignment explanation
Indices: 15646--15698 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15636 CCCGTTCGAT
15646 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
**
15672 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15698 C
1 C
15699 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15903 original size:26 final size:26
Alignment explanation
Indices: 15867--15919 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15857 CTGGTCTGAT
15867 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
15893 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15919 C
1 C
15920 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17482 original size:896 final size:890
Alignment explanation
Indices: 15790--17681 Score: 2717
Period size: 896 Copynumber: 2.1 Consensus size: 890
15780 ACGATGACGC
* * * *
15790 CCCTGGCAAAAAAAAATACGACACCAGCACAT-CTCCGAGCCTAGCATGTGCACCCGCAACCCTC
1 CCCTGGCGAAAAAAAAT-CGGCACCAGCACATGCT-CGAGCCCAGCATGTGCA-CTGCAACCCTC
* * *
15854 GGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
63 GGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAATGCGAATGAACTCCGTATG
* * * * * * **
15919 CCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCTGTCGGCTAGTGGGGCAGGATGCGTAAGT
128 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGACAGGATGCACAAGT
* * * ** *
15984 GAAGGATCGACCAGGTCCCCCCTGCGTGCTATCGATCCTGTTACCGTAACCCTCGGTCCTGTCTG
193 GAAGGATCGACCAGGTCCCCCCTACATGCTATCGATCCTGCTACCACAACCCTCGATCCTGTCTG
* * *
16049 ATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAATGGGCAGGCCGGCA
258 ATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACCGACGAAACGAATGGGCAGGCCGGCA
* * * *
16114 CTACGCCAGCTAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGC
323 CTACACCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGCTTTAGGC
16179 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
388 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
16244 TAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACA
453 TAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTTGTTTTATATTTTTCACAATTTTTGAAACA
* * * * **
16309 TTTTATGGTTCGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCTAAACTTGGTAGATG
518 TTTTACGGTTCGAGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
16374 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTT
583 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTT
* **
16439 TGTCACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGTAGCAAACCTATA
648 TGTCACCATTTGAAAAAAATGTCCCCATTTAAGACACTTTAATGGCTACTGACAGCAAACCTATA
** *
16504 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAACA
713 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAACA
* * *
16569 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACACCCCCCGCCCCCCCAATCGTCA
778 TAAGGGCCAAGTACCAGCA-CCATCACACATCATGGGCGCACACCCCCCG-ACCACCAATCGTCA
*
16634 GAACCCCAATGAC-G-TCGGTCT-AGTTCTCCGGCGATGCTCCGGCGATGGTG
841 GAACCCCAATG-CTGCT-GGT-TAAGTTCTCCGGAGATGCTCCGGCGATGGTG
16684 CCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCATCTGCAACCCTC
1 CCCT-GGCGAAAAAAAAT-CGGCACCAGCACATGCTCGAGCCCAGCATGTGCA-CTGCAACCCTC
* * *
16749 GGTCTGGTCCAATTTTACACTAGGAATGAACTCCGTATGCTTAGAATGCGAATGAACTCCGTATG
63 GGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAATGCGAATGAACTCCGTATG
*
16814 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGACAGGATGCACAAGT
128 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGACAGGATGCACAAGT
* *
16879 CG-AGGATCGACC-GAGTCCCCCCCTACATG-T-TGCTGATCCTGCTATCACAACCCTTGATCCT
193 -GAAGGATCGACCAG-GT-CCCCCCTACATGCTAT-C-GATCCTGCTACCACAACCCTCGATCCT
* * *
16940 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAATCGACGAAACGAGTGGGCAGGC
253 GTCTGATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACCGACGAAACGAATGGGCAGGC
* * * *
17005 GGGCACTACACCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTT
318 CGGCACTACACCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGCTT
*
17070 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGG
383 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
17135 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTATATTTTTCACAATTTTTG
448 TCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTTGTTTTATATTTTTCACAATTTTTG
* * ** *
17200 AAACTTTTTACGGTTCGAGAATTTTTTAAACTTTTTTCAGAAGGTTTTTTGGCCCCAAATTTGGT
513 AAACATTTTACGGTTCGAGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* *
17265 AGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTATA
578 AGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* * *
17329 GGATTTTGTGACCATTTGAAAAAAATTTCCCCATTTTAGACACTTTAATGGCTACTGACAGCAAA
642 GGATTTTGTCACCATTTGAAAAAAATGTCCCCATTTAAGACACTTTAATGGCTACTGACAGCAAA
* *
17394 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGG
707 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGG
* * *
17459 CTAATATAAGGGCCAAGTACCAGCACCATCACACATCATGTGCGCACACCCCCCGACCACCAATC
772 CCAACATAAGGGCCAAGTACCAGCACCATCACACATCATGGGCGCACACCCCCCGACCACCAATC
* * * * *
17524 GTCGGAACCCTAATGCTGCTGGTTAAGTTCTCTGGAGATGCTTCGGTGATGGTG
837 GTCAGAACCCCAATGCTGCTGGTTAAGTTCTCCGGAGATGCTCCGGCGATGGTG
* * * * *
17578 CCCTAGGCGAGAAAAATAT-GGTACCAGCACATGC-CTGAGCCCAGTATGTACACTCGTAACCCT
1 CCCT-GGCGA-AAAAAAATCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCACT-GCAACCCT
* * *
17641 CAGTCTGATTCGATCTTACACTGGGAATGAACTCCGTATGC
62 CGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGC
17682 CTAAGTCAAC
Statistics
Matches: 889, Mismatches: 95, Indels: 29
0.88 0.09 0.03
Matches are distributed among these distances:
892 3 0.00
893 72 0.08
894 65 0.07
895 226 0.25
896 523 0.59
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (890 bp):
CCCTGGCGAAAAAAAATCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACTGCAACCCTCGGT
CTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAATGCGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGACAGGATGCACAAGTGAA
GGATCGACCAGGTCCCCCCTACATGCTATCGATCCTGCTACCACAACCCTCGATCCTGTCTGATC
TTAGACTAGGAATGAACTCCGTATGCCGAAGCCAACCGACGAAACGAATGGGCAGGCCGGCACTA
CACCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGCTTTAGGCACA
TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCATGTGAAGTTTAATGGCAAGACGACTTGTTTTATATTTTTCACAATTTTTGAAACATTT
TACGGTTCGAGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
TCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGT
CACCATTTGAAAAAAATGTCCCCATTTAAGACACTTTAATGGCTACTGACAGCAAACCTATAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAACATAA
GGGCCAAGTACCAGCACCATCACACATCATGGGCGCACACCCCCCGACCACCAATCGTCAGAACC
CCAATGCTGCTGGTTAAGTTCTCCGGAGATGCTCCGGCGATGGTG
Found at i:19605 original size:26 final size:26
Alignment explanation
Indices: 19569--19621 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19559 CCAGTCCAAA
19569 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
19595 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19621 C
1 C
19622 CTAACTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:22165 original size:26 final size:26
Alignment explanation
Indices: 22136--22188 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22126 CCAGTCCGAT
22136 CTTACACTGCAAATGAACTCCATATG
1 CTTACACTGCAAATGAACTCCATATG
* ** *
22162 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGCAAATGAACTCCATATG
22188 C
1 C
22189 CTAAGTCGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTACACTGCAAATGAACTCCATATG
Found at i:22736 original size:856 final size:847
Alignment explanation
Indices: 19925--23721 Score: 3790
Period size: 856 Copynumber: 4.3 Consensus size: 847
19915 CTTTTTATGA
** * * *
19925 TTCAGGATTTTTT-TTAATTTTTTCAGAAGGATTTTTGGCCCCAAACTT-AATAGACGTGATCCT
1 TTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGA-AGACATGATCCT
* * * * *
19988 TGTATTTTTGTTGGCTTGCATAAAAAAATTCAGCTGAAAACTCGAAGTGTACAGGATTTTGTGAC
65 TGTACTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
* * * *
20053 CACTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAACTGCAAAATCT
130 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
20118 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGG
195 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
20183 CTAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGTCCCCCTAATCGTCGGAACC
260 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCCCCCAATCGTC-GAACC
* * * * * * * *
20247 TCAATGCTGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGAGCAAAAAACAAATG
323 -CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGT-ACCCGAGCGAAAAA-AAATC
* *
20312 TGCCACCAGCACATGCCCGAGCCCAGCATGTGCA-CT-CGTAACCCTCGATTTGGTCCGATCTTA
385 AG-CACCAGCACATGCCCGAGCCCAGCATGTGCACCTAC--AACCCTC-----GGTCC-A--GT-
*
20375 CCCTAGGAATGAACTT-CGTATGCTTAGACAGGGAGTGAACTCCGTATGCCTAAGTCAACCCACA
438 -CC---G-AT---CTTAC--A--C-T-G-CA---AATGAACTCCGTATG-CTAAGT--A--CA-A
* * * ** * * *
20439 -AAACGAGCGTGCGGGTG-CTCAACCGACCAGACAGGCG--GGATGCACAAGTCGGGGATCGATC
479 GAAACGAAC-TCCGTGTGCCTCAGTCGGCCAGA-AGG-GAAGGAAGCGCAAGTCGGGGATCG-TC
* * * *
20500 GGGCCCCCCCTACGTGCTGTCGATCCTACTGCCACAACCCTTAGTCTGGTCCAATCTTAGACTGG
540 GGG--TCCCC--C-T--TG-C-ATGCTATTG---CAACCCTCAGTCTGGTCCAATCTTAGACTGG
* *
20565 GAATGAACTCCGTATGTCTAAGCCAATCGATGAAACGAGCAGGCGGGCAGGCACTGCAC-T-GGC
593 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCAGGCACT--ACGTCGGC
* *
20628 CAGAGAGACAGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
656 CAGAGAGAAAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* **
20693 ATTTTTGCCATTACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
721 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * **
20758 AGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAAATTTTTACTC
786 AGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTACGG
**
20821 TTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGAAGATGTGATCCTT
1 TTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGAAGACATGATCCTT
* * * * *
20886 GTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGCATTTTGGGACC
66 GTACTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
* * *
20951 ATTTGAAAAAAATG-CCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
131 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
21015 AAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGC
196 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
21080 TAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGCCCCCTCAATCGTCGAAAACC
261 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCC-CAATCGTCG--AACC
* * * *
21145 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTACCCCGGGTGAAAAAAAATAAG
323 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTA-CCCGAGCGAAAAAAAATCA-
** * ** *
21210 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGGTCGGATCTTACACT
386 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCTACAACCCTCGGTCCAGTCCGATCTTACACT
* * * *
21275 -CGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG-CTCAGTCGGCCA
451 GC-AAATGAACTCCGTATG-CTAAGT--A--CAAGAAACGAAC-TCCGTGTGCCTCAGTCGGCCA
* * * ** * * * * **
21338 GAGGGGTAGGATGTACAAGCCGGGGTTTGGTCGAGTCCCCTCCTGCGTGCTACTGACGCTGCTGC
509 GAAGGGAAGGAAGCGCAAGTCGGGG-ATCGTCGGGT-CCC-CCT---TGC-A-T---GCTATTG-
* * * * * *
21403 CATAGCCCTCAAT-TCGGTTCACTCTTAGACTGGGCATGAACTCTGTATGCTTAAGCCAACCGAT
562 CA-A-CCCTCAGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * **** * * *
21467 GAAATGAGCGGGCGGGCAGGCACTACGTCAATTAGAGAGGAGGGATGCGTAAGCCGTGGATCGAT
624 GAAACGAGCAGGCGGGCAGGCACTACGTCGGCCAGAGAGAAAGGATGCGCAAGCCGTGGATCGAT
* * *
21532 ATGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTAATGGCTT
689 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC-T
*
21597 TGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTC
753 TGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTC
**
21662 TATTTTTCACGATTTTTGAAACTTATTACGG
818 TATTTTTCACGATTTTCAAAACTT-TTACGG
* * * *
21693 TTC-GAGATTTTTTTAAAATATTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
1 TTCAG-GATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGAAGACATGATCCT
* * * *
21757 TGTATTTTTATTGGCATGCAGAAACAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
65 TGTACTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
*
21822 CATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCT
130 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
21886 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTTGATGAGGGATAGGGGGCCAATATAAG
195 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG--TTTGATGAGGGATAGGGGGCCAATATAAG
21951 GGCCAAGTA-CAGCA-CCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAATCGTCGAACC
258 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGAACC
** * *
22013 CTTTGCCGCCCGGTCAGGTTCTCCGGA-GATGCTCTGGCGATGGTGCTCCGAGCGGAAAAAAATG
323 CAATGCCG-CCGGTCAGGTTCTCC-GACGATGCTCTGGCGATGGTAC-CCGAGCGAAAAAAAAT-
* * * *
22077 CACCACCAGCCCATGCCCGAGCCCAACATGTGCACCTACAACCCTCGATCCAGTCCGATCTTACA
384 CAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTACAACCCTCGGTCCAGTCCGATCTTACA
* * ** * * * * *
22142 CTGCAAATGAACTCCATATGCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAA
449 CTGCAAATGAACTCCGTATGCTAAGTACAAGAAACGAACTCCGTGTGCCTCAGTCG-GCCA-GAA
** * * * *
22206 ACGAACGTGCAGGCGCTCAGTCGGGGATCGACCGGGTCCCCCTTGCATGCTATTGCAACCCTCGG
512 GGGAA-G-G-AAGCGC-AAGTCGGGGATCG-TCGGGTCCCCCTTGCATGCTATTGCAACCCTCAG
* *
22271 TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGATGAAACGAGC-GGA
572 TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGG-
* * *
22335 CGGGCAAGCACTACGTCGGCCAGAGAGAAAAGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
636 CGGGCAGGCACTACGTCGGCCAGAGAGAAAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
22400 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTTATGGCTTGTAAATTCATA
701 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATA
* *
22465 CAATGGTCCCTTAAGCCATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCACGA
765 CAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
*
22529 TTTTCAAAACTTTTAAAGG
830 TTTTCAAAACTTTT-ACGG
* * *
22548 TTCAGGATTTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAATCTTGGTAA-ACATGATCCT
1 TTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG-AAGACATGATCCT
* * * *
22612 TGTACTTTTCTTGGCATGCACAAAAATATTTAGTTAAAAACTTC-AAGTGTACAGGATTTTGTGA
65 TGTACTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAGGATTTTGTGA
* *
22676 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATC
129 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
22741 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGG
194 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
** * * * * *
22806 GAAAAGTACCAGCACCCATCACACGTCATGTGCGCACATGCCCTCCGGCCCCCCAATCGACGGAA
259 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCCGCCCCCCAATCGTC-GAA
* * * * *
22871 CCACAATGCCACCGGTCAGGTTCTCCGACGATGCTCCT-GAGACGGTACCTGAGCAAAAAAAAAA
321 CC-CAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CTGGCGATGGTACCCGAGC-GAAAAAAAA
* * * *
22935 TACGGCACCCGCACATGGCCTCGAGCCCAGCAATGTGGCAATCTCACAACCCTCGGT-CTGAT-C
383 T-CAGCACCAGCACAT-GCC-CGAGCCCAGC-ATGT-GC-ACCT-ACAACCCTCGGTCCAG-TCC
** ** * * *
22998 GATCTTACACTGGGAATG-ACTCCGTATGCTAAGTACAAGCCACAAAATGCAGCGTGGGGCGCTC
440 GATCTTACACTGCAAATGAACTCCGTATGCTAAGTACAAGAAACGAACT-C--CGT-GTGC-CTC
* * * * * *
23062 AGCCGGCCAGATGGGCAGGATAACGCAACT-AGGGATCGTCGGGTCCCCC-TGCATGCTGTCGAT
500 AGTCGGCCAGAAGGGAAGGA-AGCGCAAGTCGGGGATCGTCGGGTCCCCCTTGCATGC--T--A-
* * * *
23125 CCTGCTGGCAACAACCTTAAGTCCGGATCCGATC-TAGGACTGGGAAATGAACTAC-TACTGCCT
559 --T--T-GCAAC--CC-TCAGTCTGG-TCCAATCTTA-GACTGGG-AATGAACTCCGTA-TGCCT
* * * * * * * * ***
23188 AAGCCAACCAACG-AACCAACGGGCCGGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGC-
612 AAGCCAACCGATGAAACGAGCAGG-C-GGGCAGGCACTACGTCGGCCAGAGAGAAAGGATGCGCA
* * *
23251 AGTCGTGGATCGATAGGGGGTGGTTAGGTGGGTTTAAGGCACATCTTCAATATTTTTTGTCAATG
675 AGCCGTGGATCGATA--GGGTGG-TAGGTGGGTTT-AGGCACATCTTC-ATA-TTTCTG-CCATG
* * *
23316 CCAATGCCATTTTTATGG-TTGGAAATTCATACAATGGT-CCTTAACCCTTCATGTGAAGTTTCA
733 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCA
* *
23379 TGGCAAGACGACTCGTTTTTCTATTTTTCA-GAATTTTCGAAACGTTTTACGA
798 TGGCAAGACGACTCG-TTTTCTATTTTTCACG-ATTTTCAAAAC-TTTTACGG
* *
23431 TTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAACCTT-GAAGA-AGTGATCC
1 TTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA-CTTGGAAGACA-TGATCC
* * * *
23494 TTGTACTTTTTTTGGCATGCATAAAAAAATTCATCTAAAAACTTGAAAGTGTACAGGATTTTGTG
64 TTGTACTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAGGATTTTGTG
* * *
23559 ACCATTTGAAAAAAGTGTTCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
128 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
23624 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATCAGGGATAGGGGGCCAATATAAA
193 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
23689 GGCCAAGTACCAGCACCCATCGCACATCATGTG
258 GGCCAAGTACCAGCACCCATCGCACATCATGTG
23722 TGGACGCCCT
Statistics
Matches: 2481, Mismatches: 306, Indels: 240
0.82 0.10 0.08
Matches are distributed among these distances:
854 37 0.01
855 186 0.07
856 287 0.12
857 11 0.00
858 2 0.00
859 29 0.01
860 51 0.02
861 10 0.00
862 22 0.01
863 29 0.01
864 29 0.01
865 37 0.01
866 19 0.01
867 8 0.00
868 35 0.01
869 140 0.06
870 98 0.04
871 184 0.07
872 282 0.11
873 39 0.02
874 38 0.02
875 9 0.00
876 20 0.01
877 41 0.02
878 29 0.01
879 9 0.00
880 12 0.00
881 50 0.02
882 36 0.01
883 118 0.05
884 191 0.08
886 1 0.00
888 1 0.00
891 4 0.00
896 201 0.08
897 180 0.07
898 6 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (847 bp):
TTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGAAGACATGATCCTT
GTACTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGAACCCAA
TGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTACCCGAGCGAAAAAAAATCAGCACC
AGCACATGCCCGAGCCCAGCATGTGCACCTACAACCCTCGGTCCAGTCCGATCTTACACTGCAAA
TGAACTCCGTATGCTAAGTACAAGAAACGAACTCCGTGTGCCTCAGTCGGCCAGAAGGGAAGGAA
GCGCAAGTCGGGGATCGTCGGGTCCCCCTTGCATGCTATTGCAACCCTCAGTCTGGTCCAATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCAGGCACTACG
TCGGCCAGAGAGAAAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTAC
GG
Done.