Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168306.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_531, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23842
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Found at i:821 original size:26 final size:26
Alignment explanation
Indices: 791--843 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
781 GTTGACTTAG
791 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
817 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
843 G
1 G
844 ATCAGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1721 original size:26 final size:26
Alignment explanation
Indices: 1684--1734 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1674 GTTGACTTAG
*
1684 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1710 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
1735 TGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3577 original size:26 final size:26
Alignment explanation
Indices: 3539--3620 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
3529 TGGGTTGACT
*
3539 TAAGCATACGGAGTTCATTCCCGGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
3565 TAAGCAGATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
3591 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
3617 TAAG
1 TAAG
3621 ATCAGACCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:4495 original size:26 final size:26
Alignment explanation
Indices: 4465--4517 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4455 GTTGACTTAG
4465 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4491 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4517 G
1 G
4518 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5357 original size:26 final size:26
Alignment explanation
Indices: 5321--5370 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5311 TGACTTAGGC
5321 ATACCGAGTTCATTCCCAATCTAAAA
1 ATACCGAGTTCATTCCCAATCTAAAA
* *
5347 ATACGGAGTTCATTCCCAGTCTAA
1 ATACCGAGTTCATTCCCAATCTAA
5371 GATCAGATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (26 bp):
ATACCGAGTTCATTCCCAATCTAAAA
Found at i:5922 original size:853 final size:865
Alignment explanation
Indices: 3574--7686 Score: 4404
Period size: 897 Copynumber: 4.7 Consensus size: 865
3564 CTAAGCAGAT
3574 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
*
3639 TTACGGCAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
66 TTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * * *
3704 CGTCGGAGCATTGCCAGAGACCCTGACCGGCGGCATTAGGGTTCCGTCGATCGGGGGGCCGGGCA
131 CGTCGGAGCATTGCCAGAGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGCCGGGCA
3769 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
196 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
3834 TCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
261 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
3899 CCATTAAAGCGTCTGAAATGAGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATT
326 CCATTAAAGCGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
3964 TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTGGGGC
391 TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTGGGGC
* * *
4029 CAAGAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAATGTTCCAAAAATCGTGAAAA
456 CAAGAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* *
4094 AGATAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
521 ATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
4159 ACAAGCCATCAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACGCAGCTACCACCC
586 ACAAGCCATAAAAATGGCATTGG-ATGC----ATATG-AGATGTGCC-AAAC-CCG-TA-CACTC
* *
4224 TTGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
641 -TGATCCACGGC-T----A--GTG-CTC-CT-----GC-----GCCC-CCTGCCCGCCCGCTCGT
* * * * * * * * *
4289 TTCGTCAGTTGGCTTAGGCATACAGAGTTCA-TTCGCAGTATAAGATCGGACCGGATCGAGGATG
685 TTCGTC-GTTCGCTTAGGCATACGGAGTACATTTC-CAATCTAAGATAGGACCGGACCGAGGGTT
* * * *
4353 GTGGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGGTCAATCCTCGGCTTGCGCATCCCGCCC
748 GTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCTCATCCCGCCC
*
4418 CTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
813 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
4471 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
*
4536 TTACGGCAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
66 TTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * * *
4601 CGTCGGAGCATTGCCAGAGACCCTGACCGGCGGCATTAGGGTTCCGTCGATCGGGGGGCCGGGCA
131 CGTCGGAGCATTGCCAGAGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGCCGGGCA
4666 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
196 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
4731 TCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
261 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
4796 CCATTAAAGCGTCTGAAATGAGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATT
326 CCATTAAAGCGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
4861 TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTGGGGC
391 TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTGGGGC
* *
4926 CAAGAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
456 CAAGAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
4991 ATATAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTT
521 ATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** * * * * * *
5056 ACAAGAAATAAAAATGGCATT-G-T-C-CACG-GCT-TGCGC-ATCCCGT-CTCTCTG-GCCGAC
586 ACAAGCCATAAAAATGGCATTGGATGCATATGAGATGTGC-CAAACCCGTACACTCTGATCC-AC
* * * *
5112 -G-TAGTGC-CC-GC-CCCCCCGCCCGTCCGCTCGTTTTGTCAGTTCGCTTAGGCATACGGAGTT
649 GGCTAGTGCTCCTGCGCCCCCTGCCCGCCCGCTCGTTTCGTC-GTTCGCTTAGGCATACGGAGTA
* * * * * * *
5172 CCTTTCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATC-AGCAGCATGAAGAGT
713 CATTTCCAATCTAAGATAGGACCGGACCGAGGGTTGTGGCAGCAGGATCGA-CAGCACGCAGAGG
* * * *
5236 GGGACCCGGCCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCATGCTCA
777 GGGACCCGGCCGATCCTCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
5301 TTTCGTGGGTTGACTTAGGCATAC
842 TTTCATGGGTTGACTTAGGCATAC
* * ** * **
5325 CGAGTTCATTCCCAATCTAAAAATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
* * * * *
5390 TTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCAT
66 TTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
** *
5455 CG-CTGGAGC-TTCGCTGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGG
131 CGTC-GGAGCATT-GCCAGAGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGCCGGG
* *
5518 -GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
194 CAGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
5582 CATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTACTGCCAGT
259 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * * *
5647 AGCCATTAAAGTGTTTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGA
324 AGCCATTAAAGCGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
5712 GTTTTTGGCTAAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
389 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTGGG
* * * *
5777 GACAA-AACTCTTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGA
454 GCCAAGAA-TCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
5841 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAA
518 AAAATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
5906 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCCAAACCCACCTACCA
583 TTTACAAGCCATAAAAATGGCATTGG-ATGC----ATATG-AGATGT-GCCAAA-CC-CGTA-CA
* * *
5971 CCCTATCGATCCACGGCTTGCGCATCCCTCTCTGGCTGGGGTAGTGCCCGCCTGCCCGCCCGCTC
638 --CTCT-GATCCACGGC-T-AG--T-GCTC-CT-GC---------GCCC-CCTGCCCGCCCGCTC
* * * * * * * *
6036 GTTTCATCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATTGGACCAGACTGAGGGT
683 GTTTCGTC-GTTCGCTTAGGCATACGGAGTACATTTCCAATCTAAGATAGGACCGGACCGAGGGT
* * * * *
6101 TGTGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACAGATCCTCGACTTG-TGCAACCCGC
747 TGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCT-CATCCCGC
* * *
6165 CCCTCTGGCCAGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTCAGGCATAC
811 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* *
6220 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACTGAGG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGG
* * * * * **
6284 GTTGCGACAGGACATGCTGGGCTCGGGCATGTGCTGGTTCTGCATTTTTCTTCGTCGGGGCACCA
65 GTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
* * * *
6349 TCGTCGGAGCATCGTC-GAAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGACGA
130 TCGTCGGAGCATTGCCAG-AGAACCTGACCGACGACATTAGGGTTCCGACGATC-GGGGGGCCG-
** * *
6413 GGGGGGTGTGCACACATGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATAC
192 GGCAGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
6478 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
257 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
6543 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTC
322 GTAGCCATTAAAGCGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * * *
6608 GAGTTTTCAACTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
387 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTG
* * * * *
6673 GGGCTAA-AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAACGTTTCGAAAATCAT
452 GGGCCAAGAA-TCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGT
*
6737 GAAAAATAGAGAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
516 GAAAAATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
6802 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACTCACCTAC
581 AATTTACAAGCCATAAAAATGGCATTGG-A--T-G-CATATG-AGATGTGCC-AAAC-C-CGTA-
* * * *
6867 CACCCTATCCATCCACGGCTTGTGGATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTACCCGCC
636 CA--CTCT-GATCCACGGCTAGT-G----C-TC-C--T-----GC-----GCCC-CCTGCCCGCC
* * * * * * *
6932 TGTCGCTCG-TTCAGTCGGTTGGCTTAGGCACACGAAGTTCATTCCCAGTCTAAGATCA-GACCA
678 ---CGCTCGTTTC-GTC-GTTCGCTTAGGCATACGGAGTACATTTCCAATCTAAGAT-AGGACCG
* * * * * ** *
6995 AACTGAGGGTT-TGCAGTAGCAGGATCGACAGCAGGCA-A-AGGGACCCGATCGATACCCCGGCT
737 GACCGAGGGTTGTG--GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGAT-CCTCGGCT
* * * * * *
7057 TGCGCAT-CC-CACCT-TGGCC-GATGAGCGCTGCGCA-GCTTGTTTCGTGGGTTGA-TT-GGCA
799 TGCTCATCCCGCCCCTCTGGCCGGCTGAGCGC-CCGCACGCTCGTTTCATGGGTTGACTTAGGCA
7115 TAC
863 TAC
* * *
7118 AGAGTTCATTCCCAGTCTAAGCATAC-GAGTT-TTTTCC-GTCTAAGATC-GACACAGA-T---G
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAGACTGAGG
* * * * *
7175 G-TGCAGCAGC-C-TGCT--ACT---GCAATGTTGCTGGTG-CAGATCGTTTTCTTCGTCGAGGC
65 GTTACGGCAGCACATGCTGGGCTCGAGC-ATG-TGCTGGTGCCACAT--TTTTCTTCGTCGGGGC
* * *
7231 A-CA-------A--ATCG-CAGAGAACCTGACAG-CGACATTGGGGTTCCG-CGAT-GGGGGGCC
126 ACCATCGTCGGAGCATTGCCAGAGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGG-C
* * * *
7282 CGGG-GGGTTTGTGC-C-CAT-ATGTG-GAT-GGT-CT-GTA-ATGG-CCTTATA-TGG-GCCGT
190 CGGGCAGG--TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
7335 AT---TTATGAAACC-CGAGAACTCACA-CCCCTCAACAGAGCATTTGAGATTTTACAGGTTTGC
253 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA-AGAGCATTTGAGATTTTACAGGTTTGC
* * * *
7395 TGCCAGT-GGCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAACTGGTCACAAAATCTTGTAC
317 TGCCAGTAGCCATTAAAGCGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * *
7459 ACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAAATACGAGGATCACGTCTACCA
382 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC-AACAAAAAGACAAGGATCATGTCTACCA
* **
7524 AGTTTGGGGCCAA-AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAA
446 AGTTTGGGGCCAAGAA-TCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAA
* * * *
7588 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGA-TTCACGTGAATGCTTAAGAGACCA
510 AATCGTGAAAAATAGAAAACGAGACGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCA
7652 TTGTATGAATTTACAAGCCATAAAAATGGCATTGG
574 TTGTATGAATTTACAAGCCATAAAAATGGCATTGG
7687 CACGTAGAAA
Statistics
Matches: 2865, Mismatches: 252, Indels: 238
0.85 0.08 0.07
Matches are distributed among these distances:
852 2 0.00
853 383 0.13
854 337 0.12
855 6 0.00
856 94 0.03
857 224 0.08
858 9 0.00
861 7 0.00
862 5 0.00
863 7 0.00
864 5 0.00
865 5 0.00
866 4 0.00
867 6 0.00
868 6 0.00
869 6 0.00
870 9 0.00
871 9 0.00
872 11 0.00
873 7 0.00
874 19 0.01
875 12 0.00
876 7 0.00
877 1 0.00
878 4 0.00
879 5 0.00
880 4 0.00
881 1 0.00
882 2 0.00
883 4 0.00
884 9 0.00
885 12 0.00
886 21 0.01
888 6 0.00
889 1 0.00
890 6 0.00
891 2 0.00
893 1 0.00
894 10 0.00
895 336 0.12
896 17 0.01
897 607 0.21
898 461 0.16
899 5 0.00
900 25 0.01
901 29 0.01
902 4 0.00
903 19 0.01
904 71 0.02
905 22 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (865 bp):
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
TTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
CGTCGGAGCATTGCCAGAGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGCCGGGCA
GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGCGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTGGGGC
CAAGAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGATGCATATGAGATGTGCCAAACCCGTACACTCTGATCCACGG
CTAGTGCTCCTGCGCCCCCTGCCCGCCCGCTCGTTTCGTCGTTCGCTTAGGCATACGGAGTACAT
TTCCAATCTAAGATAGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGA
CCCGGCCGATCCTCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCATAC
Found at i:6244 original size:26 final size:26
Alignment explanation
Indices: 6214--6266 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6204 GTTGACTCAG
6214 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6240 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6266 G
1 G
6267 ATCGAATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6867 original size:898 final size:886
Alignment explanation
Indices: 5078--7836 Score: 3496
Period size: 898 Copynumber: 3.1 Consensus size: 886
5068 AATGGCATTG
* *
5078 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCCGCCCGTCCGCTCGT
1 TCCACGGCTTGCGCATCCC-TCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCCCGCTCGT
** * * * * * * *
5143 TTTGTCAGTTCGCTTAGGCATACGGAGTTCCTTTCCAATCTAAGATCGGACCGGACCGAGGGTTG
61 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG
* * * * * *
5208 CGGTAGCAGGATC-AGCAGCATGAAGAGTGGGACCCGGCCGATCCCCGGCTTGCT-CATCCCGCC
126 TGGTAGCAGGATCGA-CAGCACGCAGAGAGGGACCC-GACGATCCCCGGCTTG-TGCAACCCGCC
* * *
5271 CCTCTGGCCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATTC
188 CCTCTGGCC-GATGAGCGCCCGCA-GCTCGTTTCGTGGGTTGAC-TAGGCATACAGAGTTCATTC
* ** **
5336 CCAATCTAAAAATACGGAGTTCATTCCCAGTCTAAGATC-AGATCAGACCA-AGGGTTGCGGTAG
250 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATC-GA-CAGAGGGTTGCGACAG
* * *
5399 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCTGGAGC
312 GACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGC-GGAGC
* * *
5464 TTCGCTGGAGAACCTGACCGACGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGC
376 ATCGC-GAAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGC-C
5528 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
439 ACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTC
* * *
5593 GAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTACTGCCAGTAGCCATTAAAG
502 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * * *
5658 TGTTTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTGGCTA
567 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
5723 AATTTCTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCT
632 AATTT-TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCC
* * *
5788 TTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
695 TTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
*
5853 GAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
760 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
5918 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCCAAACCCACCTACCACCCTATCGA
825 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
5980 TCCACGGCTTGCGCAT-CC-CTCTCTGGCTGGGGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCAT
1 TCCACGGCTTGCGCATCCCTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCAT
* * *
6043 CGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCA
66 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGTA
* * * *
6108 GCAGGATCGATAGCACGCAGAGGGGGACCCGACAGATCCTCGACTTGTGCAACCCGCCCCTCTGG
131 GCAGGATCGACAGCACGCAGAGAGGGACCCGAC-GATCCCCGGCTTGTGCAACCCGCCCCTCTGG
* * * *
6173 CCAGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTCT
195 CC-GATGAGCGCCCGCA-GCTCGTTTCGTGGGTTGACT-AGGCATACAGAGTTCATTCCCAGTCT
*
6238 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGACAGGACATGCTG
257 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATC-GACAGAGGGTTGCGACAGGACATGCTG
* *
6303 GGCTCGGGCATGTGCTGGTTCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAA
321 GGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCG-CGAA
6368 GAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGACGAGGGGGGTGTGCACACATGAT
384 GAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGG-CG-GGGGGGTGTGC-CACATGAT
6433 GTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACT
446 GTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACT
*
6498 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
509 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
6563 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTCAACTGAATTGTT
574 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TT
6628 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAA
638 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCCGAA
* * *
6693 AAAATTTTAAAAAATCCTGAACCGCAAAACGTTTCGAAAATCATGAAAAATAGAGAACGAGACGT
702 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
6758 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
767 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
6823 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCCA
832 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * **
6878 TCCACGGCTTGTGGATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTACCCGCCTGTCGCTCG-T
1 TCCACGGCTTGCGCATCCC-TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC---CGCTCGTT
* * * *
6942 TCAGTCGGTTGGCTTAGGCACACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTT-
62 TCA-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG
* * *
7006 TGCAGTAGCAGGATCGACAGCAGGCA-A-AGGGACCCGATCGATACCCCGGCTTGCGC-ATCC-C
126 TG--GTAGCAGGATCGACAGCACGCAGAGAGGGACCCGA-CGAT-CCCCGGCTTGTGCAACCCGC
* * * *
7067 ACCT-TGGCCGATGAGCGCTGCGCAGCTTGTTTCGTGGGTTGA-TTGGCATACAGAGTTCATTCC
187 CCCTCTGGCCGATGAGCGC-CCGCAGCTCGTTTCGTGGGTTGACTAGGCATACAGAGTTCATTCC
* * *
7130 CAGTCTAAGCATAC-GAGTT-TTTTCC-GTCTAAGATCG-A-C-ACAGATGG-TGC-AGCA-G-C
251 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGACAGAGGGTTGCGA-CAGGAC
* * *
7185 CTGCT--ACT---GCAATGTTGCTGGTGCAG-ATCGTTTTCTTCGTCGAGGCA-CA------A--
315 ATGCTGGGCTCGGGC-ATG-TGCTGGTGCAGCAT--TTTTCTTCGTCGGGGCACCATCGCGGAGC
* * *
7235 ATCGC-AGAGAACCTGACAG-CGACATTGGGGTTCCG-CGAT-GGGGGGCCCGGGGGGTTTGTGC
376 ATCGCGA-AGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGG-GCGGGGGG-GTGTGC
* * * * *
7296 C-CAT-ATGTG-GATGGT-CT-GTA-ATGG-CCTTATA-TGG-GCCGTAT--TTATGAAACC-CG
438 CACATGATGTGCGATGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCG
* *
7349 AGAACTCACA-CCCCTCAACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GGCATTAAAG
503 AGAACTCACACCCCCTTAA-AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
7412 TGTCTGAAATGGGGACACTTTTTTCAACTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
567 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
7477 AATATTTTTGTGCATGCCAAAAAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
632 AAT-TTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTC
* * *
7542 CTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
694 CTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
* *
7607 CGAGTCGTCTTGCCATGAAGA-TTCACGTGAATGCTTAAGAGACCATTGTATGAATTTACAAGCC
759 CGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
7671 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
823 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
7735 TCCACGGCTTGCGCATCCCATCTCTCTGGCCAGCGTATTGCCCGCCCGCCCACTCGCTCGTTTCA
1 TCCACGGCTTGCGCATCCC-TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCA
7800 TCGGTTGGCTTAGGCATACGGAG-TCATTCCCAGTCTA
65 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
7837 TGCATACGGA
Statistics
Matches: 1665, Mismatches: 153, Indels: 127
0.86 0.08 0.07
Matches are distributed among these distances:
853 14 0.01
854 27 0.02
855 4 0.00
856 93 0.06
857 312 0.19
858 10 0.01
861 5 0.00
862 3 0.00
863 7 0.00
864 3 0.00
865 3 0.00
866 2 0.00
867 3 0.00
868 3 0.00
869 5 0.00
870 3 0.00
871 6 0.00
872 13 0.01
873 4 0.00
874 17 0.01
875 12 0.01
876 4 0.00
878 1 0.00
883 2 0.00
884 5 0.00
885 11 0.01
886 18 0.01
888 5 0.00
889 2 0.00
890 5 0.00
891 6 0.00
893 1 0.00
894 6 0.00
895 332 0.20
896 14 0.01
897 7 0.00
898 478 0.29
899 24 0.01
900 24 0.01
901 39 0.02
902 20 0.01
903 21 0.01
904 72 0.04
905 19 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
TCCACGGCTTGCGCATCCCTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCAT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGTA
GCAGGATCGACAGCACGCAGAGAGGGACCCGACGATCCCCGGCTTGTGCAACCCGCCCCTCTGGC
CGATGAGCGCCCGCAGCTCGTTTCGTGGGTTGACTAGGCATACAGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGAATCGACAGAGGGTTGCGACAGGACATGCTGGGCTC
GGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCGAAGAACCTG
ACCGACGACATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCCACATGATGTGCGATGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
Found at i:7154 original size:25 final size:24
Alignment explanation
Indices: 7112--7161 Score: 57
Period size: 23 Copynumber: 2.0 Consensus size: 24
7102 GGGTTGATTG
7112 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATT-CC-GTCTAA
**
7138 GCATAC-GAGTTTTTTCCGTCTAA
1 GCATACAGAGTTCATTCCGTCTAA
7161 G
1 G
7162 ATCGACACAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 7 0.32
24 2 0.09
25 7 0.32
26 6 0.27
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (24 bp):
GCATACAGAGTTCATTCCGTCTAA
Found at i:7841 original size:25 final size:26
Alignment explanation
Indices: 7813--7862 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
7803 GTTGGCTTAG
7813 GCATACGGAG-TCATTCCCAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
7838 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
7863 AGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:9473 original size:26 final size:26
Alignment explanation
Indices: 9443--9498 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
9433 TCGGTTGGCT
9443 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
9469 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
9495 TAAG
1 TAAG
9499 ATCTGACCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:10218 original size:26 final size:26
Alignment explanation
Indices: 10188--10240 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10178 GTTGGCTTAG
10188 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10214 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10240 G
1 G
10241 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10324 original size:742 final size:741
Alignment explanation
Indices: 8707--10954 Score: 3436
Period size: 742 Copynumber: 3.0 Consensus size: 741
8697 CATGTATTGA
* * * *
8707 CTTAGGCATACAGAGTTCATTCCCAGTCTAGGCATACAGAGTTCATTTCCTAGTCCAAGATCGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCTAGTCTAAGATCGGA
* * * * ** ** *
8772 CCAGACTGAGGGTTGCGGCAGCACATGCTGGGTTCGAGAATGTGCTGGTGCCACATTTTTCTTCG
65 CCAGACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCTTCA
* * * * * *
8837 CCGAGG-CACCA---T-----CA-C--CAGAGAACCTGACAAGCCGCATTGGGGTTCCGACGATC
130 TCG-GGTCACCATCGTCGGAGCATCGTCGGAGAACCTGACCAGCAGCATTTGGGTTTCGACGATC
* * * * * *
8890 GGGGGGGCCCGGGGGGGTGTGTGCCCATGATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTG
194 AGGGTGGCCC-GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATCG
*
8955 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
258 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * *
9020 GTTTGCTACCAGTGGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATC
323 GTTTTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
9085 TTGTACACTTCAAGTTTTTAGTTGAATATTTTTGTGCATGCCAAAAAAAAAATACAAGGATCACG
388 TTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAAAATACAAGGATCACG
*
9150 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
453 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CTGAACCGTAAAAAGT
9215 TTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGATTCACGTGAATGCTTAAGG
517 TTTGAAAATCGTGAAAAATAG-AAACGAGTCGTCTTGCCATGAAGATTCACGTGAATGCTTAAGG
* **
9280 GACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGTTACGTAGAAATATGAAGATGTGCCT
581 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
*
9345 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCT
646 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCC
9410 CGCCCGCCCACTCGCTCGTTTCATCGGTTGG
711 CGCCCGCCCACTCGCTCGTTTCATCGGTTGG
* * *
9441 CTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC
* *
9506 CAGACCGAGGGTTACGGCAACACAAGCTGGGCTAGAGCTTGTGCTGGTGCCGTATTTTTCTTCAT
66 CAGACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCTTCAT
*
9571 CGGGTCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCAGCATTTGGGTTTCGACGATCAG
131 CGGGTCACCATCGTCGGAGCATCGTCGGAGAACCTGACCAGCAGCATTTGGGTTTCGACGATCAG
**
9636 GGTGG-CCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATCGGCC
196 GGTGGCCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATCGGCC
9700 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
261 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
9765 TTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
326 TTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
9830 TACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAAAATACAAGGATCACGTCT
391 TACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAAAATACAAGGATCACGTCT
9895 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTAGAACCGTAAAAAGTTTT
456 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT-GAACCGTAAAAAGTTTT
* *
9960 GGAAATCGTGAAAAATAGCAAACGAGTCGTGTTGCCATGAAGATTCACGTGAATGCTTAAGGGAC
520 GAAAATCGTGAAAAATAG-AAACGAGTCGTCTTGCCATGAAGATTCACGTGAATGCTTAAGGGAC
10025 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
584 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
* * *
10090 CCCACCTACCACCCTATCAATCCACGGCTTGTGCATCCTGTCTCTCTGGCCAGCGTAGTGCCCGC
649 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGC
* *
10155 CCACCCACTGGCTCGTTTCATCGGTTGG
714 CCGCCCACTCGCTCGTTTCATCGGTTGG
10183 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC
** *
10248 TGGACCGAGGGTTGCGGCAACACAAGTTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCTTCAT
66 CAGACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCTTCAT
10313 CGGGTCACCATCGTCGGAGCATCGTCGGAGAACCTGACCAGCAGCATTTGGGTTTCGACGATCAG
131 CGGGTCACCATCGTCGGAGCATCGTCGGAGAACCTGACCAGCAGCATTTGGGTTTCGACGATCAG
* * * *
10378 GGTGGTCGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGAACTTGGCCCTTATATCAGCC
196 GGTGGCCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATCGGCC
10443 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
261 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
10508 TTCTGCCTGTAGCCATTAAAGTATCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTG
326 TTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
10573 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC--AACAAAAATACAAGGATCACGTCA
391 TACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAAAATACAAGGATCACGTCT
* * ** ** * * *
10636 ATCAAGTTT-GGGCCAAAAATATTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAACGTTTC
456 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CTGAACCGTAAAAAGTTTT
* *
10700 GAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGA
520 GAAAATCGTGAAAAATAGA-AACGAGTCGTCTTGCCATGAAGA-TTCACGTGAATGCTTAAGGGA
* * * * *
10764 CCATTGTATGAATTTAAAAGGCATAAAAACT-GCATTGGCATGCAGAAATAGGAAGATGTGCCTA
583 CCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
* * *
10828 AACCCACCTACCACCCTATGGATACACGGCTTGCGCATCCCATCTCTCTGGCC-GACGTAGTGCC
647 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCC
* * * * **
10892 CACCCGCCCGCCCGCTCATTTTGTCGGTTGG
711 CGCCCGCCCACTCGCTCGTTTCATCGGTTGG
*
10923 CTTAGGCATATGGAGTTCATTCCCAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
10955 ATTGGATTGG
Statistics
Matches: 1389, Mismatches: 106, Indels: 32
0.91 0.07 0.02
Matches are distributed among these distances:
732 2 0.00
733 77 0.06
734 41 0.03
736 1 0.00
739 3 0.00
740 267 0.19
741 36 0.03
742 703 0.51
743 222 0.16
744 37 0.03
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (741 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC
CAGACCGAGGGTTGCGGCAACACAAGCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCTTCAT
CGGGTCACCATCGTCGGAGCATCGTCGGAGAACCTGACCAGCAGCATTTGGGTTTCGACGATCAG
GGTGGCCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATCGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TTCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTGAACCGTAAAAAGTTTTG
AAAATCGTGAAAAATAGAAACGAGTCGTCTTGCCATGAAGATTCACGTGAATGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCC
GCCCACTCGCTCGTTTCATCGGTTGG
Found at i:11122 original size:26 final size:26
Alignment explanation
Indices: 11086--11138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11076 GTTGACCTAG
*
11086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
11112 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
11138 G
1 G
11139 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:12024 original size:26 final size:26
Alignment explanation
Indices: 11988--12040 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11978 GTTAACTTAG
*
11988 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12014 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12040 G
1 G
12041 ATCAGGTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13781 original size:26 final size:26
Alignment explanation
Indices: 13744--13796 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13734 GTTGACTTAG
13744 GCATACGAAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
* *
13770 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
13796 G
1 G
13797 ATTCAGTGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:14279 original size:887 final size:888
Alignment explanation
Indices: 10165--14502 Score: 5654
Period size: 866 Copynumber: 4.9 Consensus size: 888
10155 CCACCCACTG
* * *
10165 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * *
10230 CCTAGTCTAAGATCGGACTG-GACCGAGGGTTGCGGCAACACAAGTTGGGCTCGAGCTTGTGCTG
66 CCCAGTCTAAGATC--AGTGAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
10294 GTGCCGTATTTTTCTTCATCGGGTCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-AGCAGC
129 GTGCCGCATTTTTCTTCGTCGGGGCACCA---TC-G-G---C-TCGGAGAACCTGACCGA-CGGC
* * ** * * *
10358 ATTTGGGTTTCGACGATCAGGGTGGTCGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGA
184 ATTGGGGTTCCGACGATCAGGG-GG-CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
**
10423 ACTTGGCCCTTATATCAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
247 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
10488 CATTTGAGATTTTACAGGTTTTCTGCCTGTAGCCATTAAAGTATCTGAAATGGGGACACCTTTTT
312 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
10553 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
377 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * ** *
10618 AATACAAGGATCACGTCAAT-CAAGTTT-GGGCCAAAAATATTTCTGAAAAAATTTTAAAAAATC
442 AATACAAGGATCACGTC-TTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
10681 CTGAACCGCAAAACGTTTCGAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTC
506 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
10746 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGGCATAAAAACT-GCATTGGCATGCAGA
571 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCATACAGA
* * * *
10810 AATAGGAAGATGTGCCTAAACCCACCTACCACCCTATGGATACACGGCTTGCGCATCCCATCTCT
635 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
10875 CTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATATGGAGTT
700 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * ** **
10940 CATTCCCAGTCTAAGATTGGATTGGACCAAGGGTTGCAACAGCAGGATCGACAGCACGTAGAGGG
765 CATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGG
* * **
11005 GGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAATGCCCACAC
830 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCACAC
* * *
11064 GCTCG-TTAGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
11128 CCCAGTATAAGATCGGATCAGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGG
66 CCCAGTCTAAGATCAG-TGAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
11193 TGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATTGTCGGAGAACCTGACCGACGGCCT
130 TGCCGCATTTTTCTTCGTCGGGGCA-C--CATC-G-GC----TCGGAGAACCTGACCGACGGCAT
* * *
11258 TGGGGTTCCGACGATCGAGGGGGCCGAGGGGGGAGTGAGCACATGATATGCGATGGGTGCTGGTA
186 TGGGGTTCCGACGATC-AGGGGGCC-A-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
11323 CTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAAAACTCACA-CCCCTTAAAGAGC
248 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
11387 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
313 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
11452 AAATGGTCACAAAATTCTTGTACAC-TCTGAGTTTTTAGCTGACTGTTTTTGAGCATGCCAACAA
378 AAATGGTCACAAAA-TCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
11516 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATC
441 AAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* ** ** * * *
11581 TCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATGGAAAAGGAGACGTCTTGCCATGAAACTTC
506 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
11646 ACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCACACAAA
571 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATACAGA
* * **
11711 AATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCTTATCCCGTCTCT
635 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
11776 CTGGCCGGCGTAGTGCCCGCCCTCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
700 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * **
11841 CATTCCCAGTCTAAGA-CAGGACCAGACCGACGGTTGCGGCAGCAGGATCGGTAGCACGA-AGAG
765 CATTCCCAGTCTAAGATCA-GACTAGACCAAGGGTTGCGGCAGCAGGATCGACAGCAC-ACAGAG
* * * * *
11904 GGGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTATGGCCAGCTGAGCACCCGCAC
828 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCACAC
* * *
11965 GCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* **
12030 CCCAGTCTAAGATCAGGTCG-GACCGAGGGTTGCGGCAGCACATGTTGGGCTCAAGCATGTGCTG
66 CCCAGTCTAAGATCA-GT-GAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* *
12094 GTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGTCGGAGAACCTGACCGGCGGCAT
129 GTGCCGCATTTTTCTTCGTCGGGGCACCA---TCG-G---C-TCGGAGAACCTGACCGACGGCAT
* *
12159 TGGGGTTCCGGCGATC----GG---GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
186 TGGGGTTCCGACGATCAGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
12217 GGCCCTTATATTGGCCCCCTATCCATAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
251 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
12282 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
316 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
12347 TGGTCACAAAAACTTGTACACTTCGAGTTTTTAG-TAGAATGTTTTTGTGCATGCCAACAAAAAT
381 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
12411 ACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCATTCTGAAAAAATTTTAAAAAATCCCGA
445 ACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* *
12476 ACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
510 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
12541 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATAC
575 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATAT
* * *
12606 GAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGTATCCCGTCTCTCTAGC
640 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
12671 CGGCGTAGTGCCCGCCTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTT
705 CGGCGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * **
12736 ATTTCCAGTCTAAGATCAGACAAGACCGAGGGTTGTGGTAGCAGGATCGACAGCATGCAGAGGGG
766 ATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGG
**
12801 GACTGGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGC-CCTCACAC
831 GACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCC-CACAC
* * *
12859 GCTCGTTTCATGGGTTGACTTAGGCATACGCAATTCATTCCCAGTCTAAG-AT-C--AG------
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
12914 ---A--C------C----AGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGT
66 CCCAGTCTAAGATCAGTGAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
12964 GCTGCATTTTTTTTCGTCGGGGCACCATC--ATCGAAGAACCTGACCGGCGGCATTGGGGTTCCG
131 GCCGCATTTTTCTTCGTCGGGGCACCATCGGCTCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * * *
13027 ATGATCGGGGGGACCAGGGGGTGTGCACACATGATGTGGGATGGGTGATGGTACTTGGCCCTTAT
196 ACGATCAGGGGG-CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
13092 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
260 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
13157 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAA
325 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
13222 AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
390 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
13287 CGTGTAT-CAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
455 CGTCT-TCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* * * * *
13351 CA-TTTGAAAAATCGTGAAAAATAGAGAACGAGTCATCTTGCCATAAAACTTGACGTGAAGGCTT
519 -AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
13415 AAGGGACCATTGTATGAATTTACAAAGCC-TAAAAATTGCATTGGAATGCAGAAATATGAAGATG
583 AAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATG
* * * **
13479 TGCCTAAACCCACCTACAACCCTATCGATACACGGCTTGCGCATCCTGTCTCTCTGGCCGGTATA
647 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * *
13544 GTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTTATTCCCAGTCT
712 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
13609 AAGATCAGACTGGATCAAGGGTTACGGTAGCAGGATCGGCATCACACAGAAGGGGACCCGATCGA
777 AAGATCAGACTAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGA
*
13674 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GACTGAGCGCCCGCAC
842 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAG-CTGAGCGCCCACAC
* * * *
13721 ACTCGTTTCGGGGGTTGACTTAGGCATACGAAGTTCACTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * ***
13786 CCCAGTCTAAGATTCAGTGAGGCCGAGGGTTACAATAGCACATGCTGGGCTCGGGCATGTGCTGG
66 CCCAGTCTAAGA-TCAGTGAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
*
13851 TGCCGCATTTTTCTTCATCGGGGCACCATC-GC-CGGAGAACCTGACCGACGGCATTGGGGTTCC
130 TGCCGCATTTTTCTTCGTCGGGGCACCATCGGCTCGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
13914 GATGATCAAGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
195 GACGATC-AGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
13979 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACA-CCCCTTAAAGAGCATTTGAGATTT
259 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * ** *
14043 TATAGGTTTTCTGCCAGCAGCCATTAAAGTGTCTGAAATGACGACAATTATTTT-AAATGGTCAC
324 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT-TTTTCAAATGGTCAC
*
14107 AAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
388 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* ** *
14172 CACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTAAAAAAAAACCCGAACCGCAAA
453 CACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
*
14237 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTT
518 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
14302 AAGGCACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACACATAAATATGAAGATGT
583 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* * * * * *
14367 GCCTAAACCCACCTACCACCCAATCGATCCACGGCTTTCGCATCCCGTCTCTTTTGTCGGAGTAG
648 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
14432 TGCCCGCCCGCCTTCCCACCCGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAG
713 TGCCCGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
*
14497 TGTAAG
774 TCTAAG
14503 CATACGGAGT
Statistics
Matches: 3039, Mismatches: 310, Indels: 188
0.86 0.09 0.05
Matches are distributed among these distances:
858 36 0.01
861 1 0.00
862 193 0.06
863 6 0.00
864 2 0.00
865 2 0.00
866 458 0.15
867 7 0.00
868 67 0.02
873 1 0.00
875 1 0.00
877 1 0.00
879 1 0.00
881 1 0.00
884 1 0.00
886 7 0.00
887 370 0.12
888 193 0.06
889 5 0.00
890 97 0.03
891 329 0.11
892 94 0.03
893 6 0.00
894 190 0.06
895 3 0.00
896 2 0.00
897 2 0.00
898 258 0.08
899 158 0.05
900 125 0.04
901 283 0.09
902 137 0.05
903 1 0.00
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAGTGAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCGCATTTTTCTTCGTCGGGGCACCATCGGCTCGGAGAACCTGACCGACGGCATTGGGGTTCCG
ACGATCAGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
GTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACTAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCC
CGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCACAC
Found at i:14506 original size:26 final size:26
Alignment explanation
Indices: 14476--14528 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14466 GTTGACTTAG
*
14476 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14502 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14528 G
1 G
14529 ATAGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15116 original size:744 final size:731
Alignment explanation
Indices: 13733--15245 Score: 2320
Period size: 744 Copynumber: 2.1 Consensus size: 731
13723 TCGTTTCGGG
* *
13733 GGTTGACTTAGGCATACGAAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
13798 TTCAGTGAGGCCGAGGGTTACAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
66 TTCAGTGAGACCGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTT
13863 CTTCATCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCAAGGGGG
131 CTTCATCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCAAGGGGG
* *
13928 TCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
196 CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCAT
* * * *
13993 CCCTCATCAAACCTCGAGAGCTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTGCC
261 CCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCC
**
14058 AGCAGCCATTAAAGTGTCTGAAATGACGACAATTATTTTAAATGGTCACAAAATCTTGTACACTT
326 AGCAGCCATTAAAGTGTCTGAAATGACGACAATTATTTTAAATGGTCACAAAATCTTGTACACCA
* * *
14123 CGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTT
391 CGAGTTTTTAGCTAAATTCTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
*
14188 GGGGCCAAAACTCCTTCCAAAAAAATTAAAAAAAAACCCGAACCGCAAAAAGTTTCAAAAATCGT
456 GGGGCCAAAACTCCTTCCAAAAAAATTAAAAAAAAACCCCAACCGCAAAAAGTTTCAAAAATCGT
14253 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGCACCATTGTATG
521 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGCACCATTGTATG
*
14318 AATTTACAAGCCAAAAAAATGGCATTGGCACACATAAATATGAAGATGTGCCTAAACCCACCTAC
586 AATTTACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * **
14383 CACCCAATCGATCCACGGCTTTCGCATCCCGTCTCTTTTGTCGGAGTAGTGCCCGCCCGCCTTCC
651 CACCCAATCGATCCACGACTTGCGCATCCCGTCTC-TCTGCCGGAGTAGTGCCCGCCCGCCAGCC
*
14448 CACCCGCTCGTTTCATC
715 CACCCACTCGTTTCATC
*
14465 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
*
14530 -T-AG-GACCGAACTGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATT
66 TTCAGTGA--G-ACCGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
14592 TTTCTTCGTCGGGGCACCATCCCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTC
128 TTTCTTCATCGGGGCACCAT---C---G---C--CGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * *
14657 GGTGATC-GGGGGGCCCGAGGGGGTGTGTGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCT
182 GATGATCAAGGGGG-CC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
14721 TATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTCGAGATT
245 TATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTCGAGATT
* ** *
14786 TTACAGGTTTGCTGCCAGTAGCCATTAAA-TAGTCTGAAATGGGGACACTT-TTTTCAAATGGTC
310 TTACAGGTTTGCTGCCAGCAGCCATTAAAGT-GTCTGAAATGACGACAATTATTTT-AAATGGTC
*
14849 ACAAAATCTTGTACACCACGAGTTTTTAGCTGAATTCTTTTATGCATGCCAACAAAAATACAAGG
373 ACAAAATCTTGTACACCACGAGTTTTTAGCTAAATTCTTTTATGCATGCCAACAAAAATACAAGG
* * ** *
14914 ATCACGTCTACCAAGGTTT-GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCCAACCGC
438 ATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCAAAAAAATTAAAAAAAAACCCCAACCGC
*
14978 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
502 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGG
* * *
15043 CTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
567 CTTAAGGCACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGA
* *
15108 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGCCGGCGT
632 TGTGCCTAAACCCACCTACCACCCAATCGATCCACGACTTGCGCATCCCGTCTCTCTGCCGGAGT
* *
15173 AGTGCCCGCCCGCCAGCGCACCCACTCGTTTCGTC
697 AGTGCCCGCCCGCCAGCCCACCCACTCGTTTCATC
*
15208 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15246 ATCAGACCGA
Statistics
Matches: 708, Mismatches: 54, Indels: 27
0.90 0.07 0.03
Matches are distributed among these distances:
729 2 0.00
730 2 0.00
731 2 0.00
732 130 0.18
735 1 0.00
738 1 0.00
741 1 0.00
742 5 0.01
743 115 0.16
744 445 0.63
745 4 0.01
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (731 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TTCAGTGAGACCGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCATCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCAAGGGGG
CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCAT
CCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCC
AGCAGCCATTAAAGTGTCTGAAATGACGACAATTATTTTAAATGGTCACAAAATCTTGTACACCA
CGAGTTTTTAGCTAAATTCTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCAAAAAAATTAAAAAAAAACCCCAACCGCAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGCACCATTGTATG
AATTTACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCAATCGATCCACGACTTGCGCATCCCGTCTCTCTGCCGGAGTAGTGCCCGCCCGCCAGCCC
ACCCACTCGTTTCATC
Found at i:15414 original size:26 final size:26
Alignment explanation
Indices: 15378--15430 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15368 GTTGACTTAG
15378 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
15404 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15430 G
1 G
15431 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16311 original size:26 final size:26
Alignment explanation
Indices: 16275--16327 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16265 GTTGACCTAG
16275 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16301 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16327 G
1 G
16328 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16490 original size:897 final size:899
Alignment explanation
Indices: 14452--19693 Score: 7245
Period size: 897 Copynumber: 5.9 Consensus size: 899
14442 CCTTCCCACC
* * *
14452 CGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * ** *
14517 TCCCAGTCTAAGATAGGACCGAACTGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
*
14582 GTGCCGCATTTTTCTTCGTCGGGGCACCATCCCCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* ** * *
14647 TTGGGGTTTCGGTGATCG-GGGGGCCCGAGGGGGTGTGTGCACATGATGTGGGATGGGTGCTGGT
196 TTGGGGTTCCGACGATCGAGGGGG-CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
14711 ACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAG
259 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
14775 CATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TAGTCTGAAATGGGGACACTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCTGAAATGGGGACACTTTTT
** * *
14839 TCAAATGGTCACAAAATCTTGTACACCACGAGTTTTTAGCTGAATTCTTTTATGCATGCCAACAA
388 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
*
14904 AAATACAAGGATCACGTCTACCAAGGTTT-GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
453 AAATACAAGGATCACGTCTATCAA-GTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
*
14968 CCCCAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
517 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
15033 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCACACAGA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
*
15098 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
*
15163 CT-GCCGGCGTAGTGCCCGCCCGCCAGCGCACCCACTCGTTTCGTCGGTTGGCTTAGGCATACGG
712 CTGGCCGGCGTAGTGCCCGCCCGCC--CG--CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * *
15227 AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAAGATCGGCAGCACGCAG
773 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * * * *
15292 AGGGGGACCCGATCAATCCCCGGCTTGCGCATCCTGCCCTTCTGGCCGACTGAGCACCTGCA
838 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
15354 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * * * * *
15419 TTTCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTTGGCCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
15484 GTGCCACATTTTTCTTTGTAGGGACACCATCACTGGAGCATCGTCGAAGAACCTGACCGGCGGCA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * *
15549 TTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTA
196 TTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
15614 CGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
15679 ATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACCTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
15744 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
15809 ATACAAGGATCACGGCTATCAAGGTT-GGGCCAAAAATCC-TTCCAAAAAATTTTAAAAAATCTC
455 ATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
* * * *
15872 GAACCGCAAAACGTTTCGAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCAC
520 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * **
15937 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAACT-ACATTTGCATGCAGAAA
585 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCACACAGAAA
* *
16001 TAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCT
649 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * ** ** *
16066 GGCCGACGTAGTGCCCACCCGCCCGTTCGCTCGTTTCGTCGGTTAACTTCGGCATACGGAGTTCA
714 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * * * *
16131 TTCCTAGTCTAAGA-CTGGATTGGACCAAGGGTTGCAGCAACAGGATTGACAGCATGTAGAGGGG
779 TTCCCAGTCTAAGATC-AGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * *
16195 GACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGACTGAGCGCCCGCA
843 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
16252 CGCTTGTTT-GTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
16316 TCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTTGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * *
16381 GTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGTCGGAGAACCTGACCGACCGCC
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* *
16446 TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGAGCACATGATATGCGATGGGTGCTGGTA
196 TTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
16511 CTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAAAACTCACA-CCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
16575 ATTTGAGATTTTACAGGTTTGCGGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
16640 AAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT-AGCATGCCAACAA
390 AAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAA
*
16704 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
453 AAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
* * ** * *
16769 TCGAACCGTAAAAAGTTTTGAAAATCGTGAAAACTGGAAAACGAGTCGTCTTGCCATGAAACTTC
518 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* **
16834 ACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCATGCAGA
583 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACACAGA
* * *
16899 AAAATGAAGATGTGCCTAAACCC-CGCTACCACCCTATCGATCCATGGCTGGCGCATCCCGTCTC
647 AATATGAAGATGTGCCTAAACCCAC-CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
16963 TCTGGTCGGTGTAGTGCTCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
711 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
** ** * * * ** * *
17028 TCATTCCCAGTCTAAGATGGGACCAGACCAACGATTGCGGCAGCAGGATAAGTAGCACGTAGAGG
776 TCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * *
17093 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTATGGCCGGCTGAGCGCCTGCA
841 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
17152 CGCTCATTTCATGGGTTGACTTAGG----C--A----A-----A--C---G---A---AGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
17191 TCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** *
17256 GTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCG-CAGGAGAACCTGACTGGCGGC
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GGAGAACCTGACCGGCGGC
* *
17320 ATTGGGGTTCCG--G--CGA-----ACGGGGGGTGTGCGCACATGGTGT-CTGATGGGTGCTGGT
195 ATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC-GATGGGTGCTGGT
* *
17375 ACTTGGCCCTTATATTGGACCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
259 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
17440 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
17505 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-GGTAGAATGTTTTTGTGCATGCCAACAA
389 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAACAA
* * * * *
17569 AAATACAAGGATCACGTCTAACAATTTTGGGGCCAAAACT-CATTCTAAAAAAATTTTTAAAAAT
453 AAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAAT
*
17633 CCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
517 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
**
17698 CACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * *
17763 AATACGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
17828 CTGGCCGGCGTAGTGCCTGCCTGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGG
712 CTGGCCGGCGTAGTG-C--CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * *
17893 AATTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAG
773 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * *
17958 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACCGGCTGAGCGCTCACA
838 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
18020 CGCTCGTTTCGTGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
18085 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
18150 GTGCTGCATTTTTGTTCG-C-CGG-AGCATCA-C----CA------GAGAACCTGACCGACGGCA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * * * *
18201 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCTCACATGTTGTGGGATGGGTGATGGTAC
196 TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
18266 TTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCA
261 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
18331 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
326 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
18396 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
391 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
18461 TACAAGGATCACGTCTATCAAGTTTGGGGTCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCG
456 TACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
* *
18526 AACCGCAAAACA-TTTCAAAAATCGTGAAAAATAGAGAACGAGTCATCTTGCCATGAAACTTCAC
521 AACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * **
18590 AG-GAAGG-TTGAAGGGACCATTGTATGAATTTACAAAG-CGT-AAAATTGCATTGGCATGCAGA
585 -GTGAAGGCTT-AAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCACACAGA
*
18651 AATATGAAGA-GTTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTC
647 AATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * ** *
18715 TCTGGCCGGCGTAGTACAC-ACCGCCCGCCCGCTCGTTTCGTCAATTGGCTTAGGCATACAGAGT
711 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *
18779 TCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCAGCAGGATCGGCAGCATGCAGAGG
776 TCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * *
18844 GGGACCTGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
841 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
18903 CACTCGTTTCGAGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * * *
18968 TCCCAGTCTAAGATTCGG-TGGGGCCGAGGGTTACGACAGCACATGCTGGGCTCGGGTATGTGCT
66 TCCCAGTCTAAGA-TCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT
** * ** * * *
19032 GGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAATCGGCAGC
130 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGC
19097 ATTGGGGTTCCGACGATCGA-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
195 ATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
19161 CTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
** * * *
19226 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGACGACAATTATTTG
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
19291 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTGTGCATGCCAAAAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
19355 ATACAAGGATCATGTCT-TCCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAAAC
455 ATACAAGGATCACGTCTAT-CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-AAAAAATC
* *
19419 CCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
518 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
** * *
19484 ACGTGAAGGCTTAAATGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACACAAAA
583 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* * * *
19549 ATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTTCGCATCCCATCTCTT
648 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
19614 TCGTCGGCGTAGTGCCCGCCCTTCCCACCCGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTT
713 TGGCCGGCGTAGTGCCCGCCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
19679 CATTCCCAGTCTAAG
777 CATTCCCAGTCTAAG
19694 CATACGGAGT
Statistics
Matches: 3839, Mismatches: 406, Indels: 193
0.87 0.09 0.04
Matches are distributed among these distances:
864 105 0.03
865 272 0.07
866 85 0.02
867 1 0.00
868 171 0.04
871 3 0.00
872 1 0.00
873 1 0.00
874 2 0.00
875 129 0.03
878 2 0.00
880 28 0.01
881 1 0.00
882 1 0.00
883 280 0.07
884 7 0.00
885 4 0.00
886 8 0.00
887 3 0.00
888 94 0.02
889 360 0.09
890 11 0.00
891 10 0.00
892 2 0.00
893 1 0.00
894 82 0.02
895 77 0.02
896 379 0.10
897 461 0.12
898 163 0.04
899 173 0.05
900 240 0.06
901 213 0.06
902 309 0.08
903 159 0.04
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
TTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
Found at i:18073 original size:26 final size:26
Alignment explanation
Indices: 18044--18096 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18034 GTTGACTTAG
18044 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
* *
18070 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
18096 G
1 G
18097 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:19703 original size:26 final size:26
Alignment explanation
Indices: 19667--19719 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19657 GTTGACTTAG
19667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19719 G
1 G
19720 ACAGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20326 original size:741 final size:741
Alignment explanation
Indices: 18905--20437 Score: 2380
Period size: 741 Copynumber: 2.1 Consensus size: 741
18895 CGCCCGCACA
** * *
18905 CTCGTTTCGAGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
** * * * *
18970 CCAGTCTAAGATTCGGTGGGGCCGAGGGTTACGACAGCACATGCTGGGCTCGGGTATGTGCTGGT
66 CCAGTCTAAGA-TCGGTCAGACCGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGT
*
19035 GCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAATCGGCAGCATT
130 GCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGGCAGCATT
19100 GGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
195 GGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
19165 GCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
260 GCCCTTATATTGGCCCCTCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTC
* *
19230 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGACGACAATTATTTGAAAT
325 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGACGACAATTATTTCAAAT
** *
19295 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTGTGCATGCCAAAAAAAATACA
390 GGTCACAAAATCTTGTACACCACGAGTTTTTAGCTAAATTCTTTGTGCATGCCAAAAAAAATACA
* *
19360 AGGATCATGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAAACCCAAAC
455 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAAACCCAAAC
19425 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
520 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
*
19490 AGGCTTAAATGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACACAAAAATATGA
585 AGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACACAAAAATATGA
* * * *
19555 AGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTTCGCATCCCATCTCTTTCGTCG
650 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTCGCCG
**
19620 GCGTAGTGCCCG-C-CCTTCCCACCCG
715 GCGTAGTGCCCGCCGCCAGCCCACCCG
19645 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
19710 CCAGTCTAAGA-CAGGATCAGACCGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGG
66 CCAGTCTAAGATC-GG-TCAGACCGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGG
** ** * *
19774 TGCCGCATTTTTCTTCGTCGGGGCACCATC-CCAGGAGCATCGTCGGAGAACCTGACCGGCGGCA
129 TGCCGCATTTTTCTTCACCGGGGCACCATCGCC-GGAGCATCACCGGAGAACCTAACCGGCAGCA
* ** *
19838 TT-GGGTTTCGGTGATCGGGGGGCTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
193 TTGGGGTTCCGACGATCGAGGGGC-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
19902 CTTGGCCCTTATATTGGCCCAC-CATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
256 CTTGGCCCTTATATTGGCCC-CTCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
** * *
19966 CATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TAGTCTAAAATGGGGACACTTTTT
320 CATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCTAAAATGACGACAATTATT
* *
20030 TCAAATGGTCACAAAATCTTGTACACCACGAGTTTTTAGCTGAATTCCTTTGTGCATGCCAACAA
384 TCAAATGGTCACAAAATCTTGTACACCACGAGTTTTTAGCTAAATT-CTTTGTGCATGCCAAAAA
* * *
20095 AAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAAT
448 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAAA
* * * *
20159 CCCCAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
513 CCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* * * *
20224 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCACACAGA
578 CACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACACAAA
* *
20289 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
643 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCT
* *
20354 CTGGCCGGCGTAGTGCCCGCCCGCCAGCCCGCCCG
708 CTCGCCGGCGTAGTGCCCG-CCGCCAGCCCACCCG
* *
20389 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
20438 ATCGGACCGA
Statistics
Matches: 722, Mismatches: 60, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
738 1 0.00
739 21 0.03
740 172 0.24
741 401 0.56
742 70 0.10
743 1 0.00
744 56 0.08
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (741 bp):
CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGTCAGACCGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGGCAGCATTG
GGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCTCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTCG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGACGACAATTATTTCAAATG
GTCACAAAATCTTGTACACCACGAGTTTTTAGCTAAATTCTTTGTGCATGCCAAAAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAAACCCAAACC
GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
GGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACACAAAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTCGCCGG
CGTAGTGCCCGCCGCCAGCCCACCCG
Found at i:20606 original size:26 final size:26
Alignment explanation
Indices: 20570--20622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20560 GTTGACTTAG
20570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20596 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20622 G
1 G
20623 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21395 original size:903 final size:902
Alignment explanation
Indices: 19643--22542 Score: 3994
Period size: 903 Copynumber: 3.2 Consensus size: 902
19633 CCTTCCCACC
* *
19643 CGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * ** *
19708 TCCCAGTCTAAGA-CAGGATCAGACCGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCT
66 TCTCAGTCTAAGATCA-GACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT
*
19772 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCAGGAGCATCGTCGGAGAACCTGACCGGCGGC
130 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCCC-GGAGCATCGTCGGAGAACCTGACCGACGGC
* **
19837 ATT-GGGTTTCGGTGATC-GGGGGGCTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
194 ATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
19900 TACTTGGCCCTTATATTGGCCCACC-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
258 TACTTGGCCCTTATATTGGCCC-CCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
19964 AGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TAGTCTAAAATGGGGACACTTT
322 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCTGAAATGGGGACACTTT
* **
20028 TTTCAAATGGTCACAAAATCTTGTACACCA-CGAGTTTTTAGCTGAATTCCTTTGTGCATGCCAA
386 TTTCAAATGGTCACAAAATCTTGTACA-GATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
20092 CAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
450 CAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* *
20157 ATCCCCAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
515 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
20222 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCACACA
580 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
*
20287 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
645 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
20352 CTCTGGCCGGCGTAGTGCCCGCCCG-CCAGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
710 CTCTGGCCGGCGTAGTGCCCGCCCGCCCA-CCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
20416 CGGAGTTCATTCCTAGTCTAAGATCGGACC-GAACCGAGGGTTGTGGCAGCAAGATCGGCAGCAC
774 CGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
*
20480 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCTTCTGGCCGACTGAGCGCCTGC
838 GCAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCTTCTGGCCGGCTGAGCGCCTGC
20545 A
902 A
* *
20546 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
20611 TCTCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
66 TCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
20676 GTGCCGCATTTTTCTTTGTCGGGACACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACGGCA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTCGGAGAACCTGACCGACGGCA
20741 TTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
195 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
20805 CTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACTCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
20870 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAATAAAGTGTCCGAAATGGGGACACTTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
20935 AAATGGTCACAAAATCTTGTACAGATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
390 AAATGGTCACAAAATCTTGTACAGATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
21000 ATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCC
455 ATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCC
**
21065 AAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
520 AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * ** **
21130 ATGATGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCATGCAGAAAT
585 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
* * *
21195 ATGAAGATGAGCCGAACCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-G
650 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
21259 ACCGGCGTAGTGCCCGTCTGCCCACCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGT
715 GCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* *
21324 TCATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTTGGCGGCAGCAGGATTGACAGCACGCAGA
780 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-TT-GCGGCAGCAGGATCGACAGCACGCAGA
* * ** * * * *
21389 GGGGACCCGATC-ATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGGA
843 GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCTTCTGGCCGGCTGAGCGCCTGCA
* * *
21448 TGCTCATTTCATTGGTTGACTTAGTCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-
1 CGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
21500 T-T--G----A-AT-----CGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGAGCTG
66 TCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
21552 GTGCCGCATTTCTCTTCGCCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACAGCG
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTCGGAGAACCTGACCGACGGCA
*
21617 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTA
195 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
21682 CTTGGCCCTTATCTTGGCCCCCTATCCCTCT-TCAAACCTCGAGAACTCACACCCCCTTAAAGAG
260 CTTGGCCCTTATATTGGCCCCCTATCCCT-TATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
21746 CATTTGAGATTTTATAGGTTTACTGCCAGTGGCCATTAAAGTGTCTGAAATAGGGACACTTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
21811 CAAATGGTC-CAAAATCTTGTACAGATCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAA
389 CAAATGGTCACAAAATCTTGTACAGATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
21875 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-TCGAAAAAATTTTAAAAAATC
454 AATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATC
* * * * *
21939 TCGAACCGTAAAAACTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
518 CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
22004 ACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGAATTGGAACACAGAA
583 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
*
22069 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTC
648 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * **
22134 TGGCCTGCGTAGTGCCTGCCGGCCCGCCCACCCG-TTCGTTTCATCGGTTGGCTTAGGTGTACGG
713 TGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTT-GTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * *
22198 AGTTCATTCCCAATCT-AGATCAGACCAGACCAAGGATTACGGTAGCAGGATCGATAGCACGCAG
777 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* ** * *
22262 AAGGGGACCTGACCGATCCTTGGCTGGCGCAT-CTCGCCCTTCTGGCCGGCTGAACGCCTGCA
842 -AGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCTTCTGGCCGGCTGAGCGCCTGCA
* * *
22324 TGCTCGTTTCATTGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
22389 TGC-CAATCTAAGAT-TGTACGGGACCGAGGGTTACGG-AGCACATGCTGGGCTCAGACATGTTC
66 T-CTCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * *
22451 TGGTGCAGGCA-TTTTCTTTCAG-CGGGGCA-CATCGTCGGAGCTAAGCATCGCGTTAGAA-CTG
129 TGGTGC-CGCATTTTTC-TTC-GTCGGGGCACCATC-CCGGAGC--ATCGTCG-G--AGAACCTG
* *
22512 ACCGGCGGCATT-GGGTTTCGACGATCGGGGG
185 ACCGACGGCATTGGGGTTCCGACGATCGGGGG
22543 ACTGGACAGA
Statistics
Matches: 1774, Mismatches: 169, Indels: 107
0.87 0.08 0.05
Matches are distributed among these distances:
874 22 0.01
875 15 0.01
876 506 0.29
877 228 0.13
878 2 0.00
881 3 0.00
882 3 0.00
885 2 0.00
886 1 0.00
888 2 0.00
889 2 0.00
890 1 0.00
893 2 0.00
896 3 0.00
897 3 0.00
900 1 0.00
901 42 0.02
902 196 0.11
903 658 0.37
904 59 0.03
905 19 0.01
906 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (902 bp):
CGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
TGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACAGATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCA
AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCTTCTGGCCGGCTGAGCGCCTGCA
Found at i:22378 original size:26 final size:26
Alignment explanation
Indices: 22345--22400 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
22335 TTGGTTGACT
*
22345 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
* *
22371 TAAGCATATGGAGTTCATTGCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
22397 TAAG
1 TAAG
22401 ATTGTACGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:22634 original size:11 final size:11
Alignment explanation
Indices: 22618--22650 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
22608 GTCGGGGCAC
22618 CATCGTCGGAG
1 CATCGTCGGAG
22629 CATCGTCGGAG
1 CATCGTCGGAG
22640 CATCGTCGGAG
1 CATCGTCGGAG
22651 AACTTGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Done.