Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168307.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_532, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23836
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Found at i:805 original size:26 final size:26
Alignment explanation
Indices: 768--820 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
758 GTTGACTTAG
768 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
820 G
1 G
821 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1707 original size:26 final size:26
Alignment explanation
Indices: 1671--1723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1661 GTTGACTTAG
*
1671 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1697 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1723 G
1 G
1724 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1824 original size:11 final size:11
Alignment explanation
Indices: 1810--1836 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
1800 GCACCATCAC
1810 CGGAGCATCGT
1 CGGAGCATCGT
1821 CGGAGCATCGT
1 CGGAGCATCGT
1832 CGGAG
1 CGGAG
1837 AACCTGACCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.26, G:0.41, T:0.15
Consensus pattern (11 bp):
CGGAGCATCGT
Found at i:2385 original size:26 final size:26
Alignment explanation
Indices: 2349--2401 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2339 GTTGACTTAG
2349 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2375 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2401 G
1 G
2402 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:4163 original size:26 final size:26
Alignment explanation
Indices: 4125--4177 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4115 GTTGACTTAG
4125 GCATACGATGTTCATTCCCAATCTAA
1 GCATACGATGTTCATTCCCAATCTAA
*
4151 GCATACGGA-GTTCATTCCCAGTCTAA
1 GCATAC-GATGTTCATTCCCAATCTAA
4177 G
1 G
4178 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGATGTTCATTCCCAATCTAA
Found at i:4406 original size:895 final size:890
Alignment explanation
Indices: 2056--6657 Score: 6027
Period size: 895 Copynumber: 5.2 Consensus size: 890
2046 AAATGGTCAC
*
2056 AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
2121 CGACTTGCGCATCCTGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCAG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCTCGTTTCGTCGG
* * * *
2186 TTGGCATAGGCATACAGAGTTCATTCCCAGTCTAAGA-TGAGACCGGATCGAGGGTTGCAGA-AG
127 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGA-AGAATCGAGGGTTGC-GATAG
** *
2249 CAGGATC-G-A-C-C-TAGAGGGGGACCCGA-CTGATCCCCGGCTTATGCATCCC-ACCCTACTG
190 CAGGATCGGCAGCACGTAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCT-CTG
* *
2307 GCCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
253 GCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGAGTTCATTCCCAGTC
* * *
2372 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGTC-GCACATGC
317 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GGCAGCACATGC
* * ** *
2436 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGAGGCACCATCACCGGAGCATCACCG
381 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGTCGGAGCATC-GCG
* * *
2501 GAGAACTTGACCGGCGGCATTGGGGTTCCAACGATCGAGGGGGTCGAGGGAGGGTGTGCGCACAT
444 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGG--GCGGG-GGGTGTGCGCACAT
*
2566 GATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
505 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
2631 ACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTTCTCCCAGTAGCCATTAAAGTATC
570 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
2696 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATT
635 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* ** *
2761 TCTTTGTGCATGCCAACAAAAATACAAGGATCACCACTACGAAGTTTGGGGCCAAAACTCCTTCC
700 T-TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
2826 GAAAAAATTTAAAAAAATCTGGAACCGTAAAAAGTTTTCAAAAATCATGAAAAATAAAAAACGAG
764 AAAAAAATTTTAAAAAATCTTGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAG
* * * *
2891 TCGTCTTGTCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC-TCT
828 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-A
2954 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
3019 CGGCATACGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCATTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG----CCCGCCCGCTCGTTTCG
* * * *
3084 TCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATAG-GACCGGA-CTGAGGGTTGCG
123 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGA-AGAATC-GAGGGTTGCG
* * * * * * * *
3147 GTAGCAAGATTGACAGCACGTAGAGGGGGACCCGGTCGATCCTCGGCTTGCACATCCCACCCCTC
186 ATAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
3212 CGGTCGGTTGAGCACCCGCATGCTCGTTTCGCGGGTTGACTTAGGCATAC--G----------G-
251 TGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGT
* * *
3264 ---AG--T------TT-ATTCCTAGTCTAAGATCAGACCAGACCGAGGGTCGCGGCAGCACATGC
316 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGC
* * *
3317 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCGCCGAAGCATCGCTG
381 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG-CACCATCGTCGGAGCATCGC-G
* * * * ** *
3382 GAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGTGTGCGTGCATGAAG
444 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATG
*
3447 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTC
509 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3512 ACACCCCCTTAAAAAGCATATT-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
574 ACACCCCCTTAAAGAGCAT-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
3576 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
638 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTT
* * ** *
3641 TTGTGCATGCTAATAAAAATACAAGGATCACGTCTACCAAGTTTGATG-TAAGAACTCCTTCCAA
702 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-AACTCCTTCCAA
* *
3705 AAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAGCGAGTCG
766 AAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
3770 TCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATA
831 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
3830 CAAATGGCATTGGCATGTGGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
3895 TGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCTCGCTCATTTCATCGGTTGG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
*
3960 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAGAAGAATCGAGGGTTGCGATAGTAGGA
131 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GAGAAGAATCGAGGGTTGCGATAGCAGGA
* * * * * *
4025 TCAGCAGCACGCAGAGGGGGGCCCGACCGATCCCCGACTTCCGCATCCCGCCCCTCTGGCCGGTT
195 TCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTT
*
4090 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGATGTTCATTCCCAATCTAAGCAT
260 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-GTTCATTCCCAGTCTAAGCAT
* *
4155 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGAGCTCG
324 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
** * * *
4220 GGCATGTGCTGGTATCGCATTTTTCTTCGCCTGGGTACCATCGTCGGAGCATCGTCGGGGAACCT
389 GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCG-CGGAGAACCT
* *
4285 GACCGGCGGCATTGGGGTTCCGACAATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGTGATG
452 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATG
* *
4350 GGTTCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
516 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
4414 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGA
581 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
4479 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTATGCAT
646 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCAT
*
4544 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACAAAAAAATTTT
710 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * * *
4609 AAAAAATCATGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCAT
775 AAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
4674 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATA
840 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * ** *
4725 AAAATGGCATTGTCACGTAGAAATTTGAAGATGTGCCTAAACCCACAAACCACCCTATCCATCCA
1 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
4790 TGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCTACCTGCCCGCCCACCCGCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-GCCCG----CCCGCTCGTTTCG
* * * * *
4855 TCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGA-TCAGACCAGACT-AAGGGTTGTG
123 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGA--AGAATCGAGGGTTGCG
* * ** *
4918 ATAGCAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCTTGGCTTGCGCATCCTGCCCCTC
186 ATAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* *
4983 TGGCCGGTCGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG
251 TGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAG
* * * * * * *
5048 TCTAAGCATATGGAGTTCATTCTC-GATCTAAGATCGAATCGGATCGAGGGTTGTGGCAGCACAT
315 TCTAAGCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
* *
5112 GTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA---TC---GC-T---
379 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCGC
* * *
5167 GGAGAACCTGACCGGCGGTATTGCGGTTCCGACGATCGGGGGGTC-GGGGGTGTGCGCACATGAT
443 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGAT
* *
5231 GTGCAATGGGTGCTAGTACTTGGCCCTTATATT-G-CCCCTATCCCTCATCAAACCTCGAGAACT
508 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
5294 CACACCCCCTTAAAAAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGG
573 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
5359 AATGGGGACACTTTTTTCAAATGGTCACGAAATCCTCTACACTTCAAGTTTTTAGCTGAATGTTT
638 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTT
* * * * * * * *
5424 TTGTGAAAGCCAACAAAAATACAAGGATCACGGCTACAAAGTTTGGGACAAAAACTCCTTCTAAA
702 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* **
5489 AAAATTTTAAAAAATCCTGAACCGCGAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
767 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
** * * *
5554 CTTGCCATGAAACTTCACGTGTCGGCTTAAGGGAGCATTCTATGAATTTACGAGCCATA
832 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
5613 AAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
5678 CGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTGGTCAG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * *
5743 TTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGA-TCAGACCGGACCGAGGGTTACGGTAGC
127 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGA-AGAATCGAGGGTTGCGATAGC
* * * * * * *
5807 AGGATCGGTAGCATGCAGAGGGGGACCCAATCGATCCCTGGCTTGCGCATCCTGCCCCTTTGGCC
191 AGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * *
5872 GGTTGAGCGCCCGCATGCTCATTTCGTGGGTTCACTTAGGCGTACAGAGTTAATACCCAGTCTAA
256 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
*
5937 GCATACGGAGTTC-TTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGG
320 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
6001 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGAGGCACCATCCTCGGAGCATCGCTGGAGA
385 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGTCGGAGCATCGC-GGAGA
* * ** * * *
6066 ACCTGACCGACAGCATTGAAGTTCCGACGATCGAGGGGCCAGGGGGGTGTGTGCACA--ATGTGC
448 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGTGTGCGCACATGATGTGC
*
6129 GATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCCAGAACTCACA
512 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
6193 CCCCCTTAAAGATCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
577 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
6258 GGG-CACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
642 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
* * **
6322 CAAGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
707 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* * ** **
6387 TTTAAAAAATCTCGAACCGTAAAAATTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
772 TTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
6452 CATGAAACTTCACGTCAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
837 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** *
6506 AAAATGGTGTTGGCACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
6571 CGCCTTACGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCAGCTCGTTTCGTCGGTTGG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
*
6636 CTTAGGCATACGGTGTTCATTC
131 CTTAGGCATACGGAGTTCATTC
6658 AACTTGCGCA
Statistics
Matches: 3256, Mismatches: 353, Indels: 199
0.86 0.09 0.05
Matches are distributed among these distances:
868 56 0.02
869 108 0.03
870 3 0.00
872 5 0.00
876 177 0.05
877 278 0.09
878 7 0.00
880 10 0.00
881 126 0.04
882 3 0.00
883 83 0.03
884 194 0.06
886 4 0.00
887 1 0.00
888 411 0.13
889 91 0.03
890 12 0.00
891 41 0.01
892 1 0.00
893 258 0.08
894 125 0.04
895 652 0.20
896 61 0.02
898 95 0.03
899 7 0.00
901 6 0.00
902 293 0.09
903 59 0.02
904 3 0.00
905 1 0.00
906 5 0.00
907 75 0.02
908 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGAAGAATCGAGGGTTGCGATAGCAGGAT
CGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGTCGGAGCATCGCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
TCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
Found at i:5077 original size:26 final size:26
Alignment explanation
Indices: 5027--5079 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5017 GTTGACTTAG
*
5027 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
*
5053 GCATATGGAGTTCATTCTCGA-TCTAA
1 GCATACGGAGTTCATTC-CGAGTCTAA
5079 G
1 G
5080 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTCTAA
Found at i:8805 original size:26 final size:26
Alignment explanation
Indices: 8776--8828 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8766 GTTGACTTAG
8776 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
8802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
8828 G
1 G
8829 ATTGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:8913 original size:901 final size:899
Alignment explanation
Indices: 6997--9805 Score: 3839
Period size: 901 Copynumber: 3.1 Consensus size: 899
6987 GTTGACTTAG
* * * * *
6997 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGTACCGAGGGTTGCGGCAGTACATGCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * * *
7062 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGTACCATCATCGGACCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGAAGA
* * * *
7127 ACCTGACCCAC-AGCATTGCGGTTCTGACGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATG
131 ACCTGACCGACGA-CATTG-GGTTCCGGCGATC-GGGGGGTCA-GGGGGGTGTGCGCACATGATG
*
7191 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTC
192 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
7256 ACACCCCCTAAAAGAGCATTTGGGATTTTACAGGTTTGCTAG-CAGTAGCCATTAAAGTGTCTGA
257 ACACCCCCTAAAGGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGA
* *
7320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATGTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
7385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *** ** * *
7450 AAAATTTAAAAAATCTCAAACTACAAAAAGTTTTGAAAGTCATGAAAAATAGAAAACGAGTTGTC
451 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
7515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
7580 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCGACCTACCACCATATCGATCCACGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGACTTG
* ** * * * * * * *
7645 CGTATCCCGTCTCTTTTACGGGCGTAGTGCTCGGCCGCCCGTCGGCTCGTTCGCTTCGTTGGTTG
645 CGTATCCCGTCTCTCTGGCAGGCGTAGTGCT-TGCCGCCCGCCCGCTCGATCGTTTCGTCGGTTG
* * *
7710 GCTTAGGCATACAGAGTGCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAAGA
709 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAAGA
* * * *
7775 TCGGTAGCATGCAGAGGGGGACCCGACCGGTGCCT-GGCTTGCGCATCCCGCCCCTCTTGTCGGC
774 TCGATAGCACGCAGAGGGGGACCCGACCGAT-CCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGC
* * * ** *
7839 TGAGCGCCCGCACGTTCATTTCGTGGGTTGACCTAGGCATACAAAGTTCATTTCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
7901 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
** * * *
7966 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGAAGA
*
8031 ACCTGACCGACGACATTAGGGTTCCGGTGATCGGGGGGTC-GGGGGGTGTGCGCACATGATGTAC
131 ACCTGACCGACGACATT-GGGTTCCGGCGATCGGGGGGTCAGGGGGGTGTGCGCACATGATGTAC
* *
8095 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
8160 ACCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTAAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
8225 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
8290 GCATGCCAAAAAAAATACAAAGATCACGTCTACCAATTTTGGGGCCAAAAATCCTTCCCAAAAAG
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-
* *
8355 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
8420 CCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
8485 TGGCATGCAGAAATATAAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGACTTGCGC
584 TGGCACGCAGAAATATGAAGATGTGCCTAAAC-CACCTACCACCCTATCGATCCACGACTTGCGT
*
8550 ATCCCGTCTCTCTGGCAGGCGTAGTGCTTGCCCGCCCGCCCGCTCGATCGTTTTGTCGGTTGGCT
648 ATCCCGTCTCTCTGGCAGGCGTAGTGCTTG-CCGCCCGCCCGCTCGATCGTTTCGTCGGTTGGCT
* * * *
8615 TGGGCATA-GGAGTTCATTCCCAGTCTAAAATCAGACTGGACCGAGGGTTACGGTAGCAAGATCG
712 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAAGATCG
* * * * * *
8679 ATAGCACCCAGAGGGGGACCCGACCGATCCTCGGCTTACACGTCCCGCCCCTCTGGCCGGCTGAA
777 ATAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAG
*
8744 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
8802 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCTAGGGTTACAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
8867 CTCGGGCATGTGCTGGTGCCGTATTTTCCTTCGTCGGGGAACCATCG-CTGGAGCATCGTC-AGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGTCGA-A
* * * * *
8930 GAACCTGACCGATGGCATTGGGGTTTCGGCGATCGAGCGGGTCGAGGGGGGTGTGCGCACAGGAT
129 GAACCTGACCGACGACATT-GGGTTCCGGCGATCG-GGGGGTC-AGGGGGGTGTGCGCACATGAT
* * *
8995 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAGCT
191 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
9060 CGCACCCCCATAAAGG-GCATTTGAGATTTGACAGATTTGCTACCAGTAGCCATTAAAGTGTCCG
256 CACACCCCC-TAAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* ** * *
9124 AAATAGGGACACTTTTTTCAAATGGTCATGAAATCTTGTACACTTCGAGCTTTTAGCTGAATTGT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
9189 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-
*
9254 AAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTG
449 AAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
9318 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
9383 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT-CCACCCTATCGATCCA-TAG
578 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGA-
* * * * * **
9446 CTTGCTTATCCCGTCTCTCTGGCCGACATA--G--T---GCCCGCCCGCTC-A---TTTCATCAA
641 CTTGCGTATCCCGTCTCTCTGGCAGGCGTAGTGCTTGCCGCCCGCCCGCTCGATCGTTTCGTCGG
* * *
9500 TTGGCTTAGACATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGTA
706 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCA
* * ** * * * * *
9565 GGATCGACAGCACGTGGAGGGGGACCTGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGTCG
771 AGATCGATAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCG
* * *
9630 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
9694 GCATACAGAGTTCATTCCCAATCTAAGATC-AGACCGGACCAAGGGTTGCGGCAGCACATGCT-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTAG
* * * *
9757 CGCTCGGGCATGTGCTAGTGTCGAATCTTTCTTCATCGGGGCACCATCG
65 -GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCG
9806 CCCTCTTGTT
Statistics
Matches: 1688, Mismatches: 197, Indels: 52
0.87 0.10 0.03
Matches are distributed among these distances:
891 19 0.01
892 250 0.15
894 1 0.00
895 12 0.01
899 1 0.00
900 6 0.00
901 557 0.33
902 240 0.14
903 50 0.03
904 539 0.32
905 13 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGAAGA
ACCTGACCGACGACATTGGGTTCCGGCGATCGGGGGGTCAGGGGGGTGTGCGCACATGATGTACG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTAAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGACTTGCGTATC
CCGTCTCTCTGGCAGGCGTAGTGCTTGCCGCCCGCCCGCTCGATCGTTTCGTCGGTTGGCTTAGG
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAAGATCGATAG
CACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:9698 original size:26 final size:26
Alignment explanation
Indices: 9668--9720 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
9658 GTTGACTTAG
*
9668 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
9694 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
9720 G
1 G
9721 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:10155 original size:158 final size:159
Alignment explanation
Indices: 9822--10201 Score: 467
Period size: 158 Copynumber: 2.4 Consensus size: 159
9812 TGTTTCGTCA
* * * * * * *
9822 GTTGGCTTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGACCGAACGGAGGGTTACGGCAGC
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGC
* * * *
9887 AGGATCGGCAGCATGCAGAAGGGGACCCGATCGATCCCCGGTTTACGTATCCCTCACCTCTGGCC
66 AGGATCGGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTACGCATCCCTAACCTCTGGCC
** * * *
9952 GGCTGAGTGCCTGCACGATCGTTTCATGG
131 GGCTGAGCCCCCGCACGATCATTCCATGG
* * *
9981 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTATGATAGC
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGC
** * * **
10046 AGGATCGGCAGCACGCAG-AGGGGACTTGGTTGATCCCCGGCTTGTGCATCCC-AACCTTCTGGC
66 AGGATCGGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTACGCATCCCTAACC-TCTGGC
* * *
10109 CGGCTGAGCCCCCGCATGCTCATTCCGTGG
130 CGGCTGAGCCCCCGCACGATCATTCCATGG
* *
10139 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGACA
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACA
10202 ACACATGCTA
Statistics
Matches: 188, Mismatches: 32, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
157 3 0.02
158 112 0.60
159 73 0.39
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGC
AGGATCGGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTACGCATCCCTAACCTCTGGCC
GGCTGAGCCCCCGCACGATCATTCCATGG
Found at i:11050 original size:26 final size:26
Alignment explanation
Indices: 11010--11062 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11000 GTTAACTTAG
*
11010 GCATACGGAGCTCATTCATAGTCTAA
1 GCATACGGAGCTCATTCACAGTCTAA
* *
11036 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCACAGTCTAA
11062 G
1 G
11063 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCACAGTCTAA
Found at i:11940 original size:26 final size:26
Alignment explanation
Indices: 11900--11951 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11890 TTGACTTAGG
*
11900 CATACGGAGTGCATTCCTAGTCTAAA
1 CATACGGAGTGCATTCCCAGTCTAAA
* *
11926 CATATGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTGCATTCCCAGTCTAAA
11952 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTGCATTCCCAGTCTAAA
Found at i:12837 original size:26 final size:26
Alignment explanation
Indices: 12801--12852 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12791 TTGGCTTAGA
12801 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
*
12827 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
12853 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:13161 original size:901 final size:899
Alignment explanation
Indices: 10149--23836 Score: 16189
Period size: 904 Copynumber: 15.3 Consensus size: 899
10139 GTTGACTTAG
* * * * * *
10149 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGACAACACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
*
10214 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * ** * *
10279 ACCTGACAGGCGGCATTGGGGTTCCGACGAT--------CGGGGGGGTGTACGTGCATGATATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGACGGGGGGGTGTGCGCACATGATGTGC
*
10336 GATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* **
10401 CCCCCTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTAACAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
10466 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGGTGAAGTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * *
10531 GCATGCCAACAAAAATGCAAGGACCATGTCTGCCACGTTTGGGGCCAAAAATCC-TTCTAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAA
** * *
10595 ATTTTAAAAAATCTCGAACCAAAAAAAGTTTCAAAAATCGA-GAAAAATAAAAAATGAGTCGTCT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTCT
* * *
10659 TGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGTCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
10724 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * * *
10789 CCATCCCATCTCTCTGGTCGGCGTAGT----GCCTGTCCGCCCGCTCATTTCATCAGTTCGTTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * * * * *
10850 GGCATACGAAGTTCATTACCAGTGTAAGATCAGACC-GAACTGTGGGTTACAGAAGCAGGATCGA
714 GGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCAG-ACCGAGGGTTGCGGCAGCAGGATCGG
* * * ** * * *
10914 TAGCACGCAGAGGGGGACCCGGCCGATCCTCGATTTACTCATCCCACCCCTCTGGCCGGCTGAGC
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * **
10979 GCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGCTCATTCATAGTCTAA
843 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
11036 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
** **
11100 GCTCGGGCATGTGCTGGTGCTACATTTTTCTTCACCGGGG------CA-C----CATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * * * *
11154 AACCTGACCGGCCGTATTGGGGTTCCGGA-GAT-GTCAGGGG-C-CGGGGGTGTACGCACATGAT
130 AACCTGACCGGCGGCATTGGGGTTCC-GACGATCG--GGGGGACGGGGGGGTGTGCGCACATGAT
* * *
11215 GTGCGATGGGTGCTGGTACTTGGCCCTTAGATT-GCCCCCTATCCCTTATCAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
11279 CACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
11344 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * * * *
11409 TTGTGCATGCCAAAAAAAATAAAAGGATCACATCTACAAAGTTTGGAGCTAAAACTCCTTCCAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * *
11474 AAAAGTTTAAAAAATCTAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGAGTCGT
452 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
11539 CTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
11604 GAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCATGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
11669 GCGCATCCCGTCTTTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG--C--CCGCTCGTTTCGTCGGTT
* ** ** * * *
11734 GGCTTAGGCATACAGAGTTCATTCATAGTCTAAGATCCAACCAGATCAAGGGTTGCGGCATCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGGTTGCGGCAGCAGG
* ** * * * * **
11799 ATCGACAGCACGCAGA-GGGGACCCGGGCGATCCCCGGCTTGCGCGTCTCACCTCTAAGGCCGGC
773 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * ** * * *
11863 TTAGCACCCGCACGCTTGTTTTATGGGTTGACTTAGGCATACGGAGTGCATTCCTAGTCTAA
838 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
11925 ACATATGGAGTTCATTCCCAGTCTAAAATCGAACC-AGACCGAGGGTTGCGGCCGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
** ** * * * ** * *
11989 GCTCGACCATGTGCTGGTGCCATAATTTTCTTCG-CTAGGACACCAT-AGTTGGAGCATCACTGG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCA-CCGGAGCATCGCCGG
* *
12052 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGCGGAACGGGGGGGTTGTGCGCACATGA
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGACGGGGGGG-TGTGCGCACATGA
* * * *
12117 TGTGAGATAGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
12182 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
12247 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
12312 TTTGTGCATGCCAAGAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* *
12377 AAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
451 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
12442 TCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
12507 GCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * *
12572 TACGCATCTCGTCTCTCTGGCCGATGTAGTGCCCGCCTGCCCACCCGCTCGTTTCATCGGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGC
**** * * * *
12637 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGGTCAGACCGAGGGTTACGGTAGTAGGAAC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * *
12702 GGCAGCACGCAGAGGAGGACCCGATCGATCCGCGGCTTGCGCATCTCGCCCCTCTGGCCGGTTGA
776 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
12767 GCACCTGCACGCTCGTTTCGTTGGTTGGCTTAGACATACGAAGTTCATTCCCAGTCTAA
841 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
12826 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
12891 CTCAGGCATGTGCTGGTGTTGCATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
*
12956 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAGGAACGGGGGGGTTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGACGGGGGGG-TGTGCGCACATGATGT
* * *
13021 GAGATAGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
13086 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
13151 TGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 TGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
13216 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTCGGGGCCAAAACTCCTTTCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * * *
13281 AAATTTAAAAAAATC-CTGAACCGCAAAACGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
453 AAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
13345 CTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATA
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
13410 GCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
13475 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCGCTCGTTTCGTCGGTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
13540 TAGGCATACGGAGTTCATTCCCAGTCTATGA-TAGGACCA-AGCTGAGGGTTACGGTAGTAAGAT
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTA-AACCAGA-CCGAGGGTTGCGGCAGCAGGAT
* *
13603 CGACAGCACGCAGA-GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
775 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
13667 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-TAGAGTTTATTCCCAGTCTAA
840 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * *
13727 GCATACGGAGTTCATTCCCAGTCTAAGATCGCA-CTAGACCGAGGGATGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
13791 GCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGCGGTACCATCATCGGAGAATTG-CGAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG-GA
* * * * * *
13855 GAACCTGATCGAG-AGCATTGGGGTTTCGATGATCGGGGGGGC-AGGGGGTGTGCGCACATGATG
129 GAACCTGACCG-GCGGCATTGGGGTTCCGACGATCGGGGGGACGGGGGGGTGTGCGCACATGATG
*
13918 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
13983 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
14048 ATGGTGACGCTTTTTTCAAACGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * * * * *
14113 TATGCATGCTGACAAAAATACAAGAATCATGTCTACCTAGTTTGGGGCCGAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * **
14178 AACTTTTAAAAAATCTCGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
14243 TTGCCATGAAACTTCATGTGAAGGCTTAAGGAACAATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
14308 CATTGGCATGCAGAAATATGAAGATTTGCCTCAGCCCACCTACCACCCTATCGGTCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
14373 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCCCGCTCGTTTTGGCG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCTGCCCGCCCGCTCGTTTCGTCG
* * * ** *
14438 GTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTGTGGCAGC
705 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGGTTGCGGCAGC
* * * * * * * * *
14503 AGGATCAGTAGCATGTAGAAGGGGACCCGACCGATCCCTGGCGTACGCATCCCACCCCTCTGGCC
770 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
14568 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAA
835 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
14633 G-AT-C--A----A-----A--C------C--A--G-ACCGA-GGATGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
14671 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
** * * ** *
14736 ACCTGACCGGCAACATTGGTGTTTCGGTGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGACGGGGGGGTGTGCGCACATGATGTG
* * * *
14801 CGATGGGTGCTAGTACTGGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCCAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
14866 ACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTATGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
14931 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
14996 TGCATGCCAA-AAACAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAA
390 TGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
* * * * * * *
15060 AAATTTAAAAAAATCTTGAACCGCAAGAGGTTTCGAAAATCATGAAAAATAGAAAGCGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
15125 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * *
15190 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGGTCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15255 CGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCACCCGCTCGTTTCATCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG----CCCGCTCGTTTCGTCGGTTG
* * * * ** * * * *
15319 GTTTGGGCATACGGAGTTCAGTCCCAGTCTAAGATTAGACTGGACTGAGGGTTACGACAGCAGAA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGGTTGCGGCAGCAGGA
* * **** ** ** *
15384 TCGGTAGCACGTAGATCAAGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCTAGTT
774 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
15449 GAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAA
839 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * *
15510 GCATACGGAGTTCATTCCTAGTCTAAGATCGAATC-AGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* ** * ** * * * *** *
15574 GCTTGGGCATGTGCTACTGTCATATATTTCTTCATCGAGGCACCATCGTAGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * *
15639 AACCTGACCGACGGCATTGGGGTTCCGGCGAT-GAAGGGGGCCGGGAGAGGGTGTGCGCACATGA
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCG--GGGGGACGGG-G-GGGTGTGCGCACATGA
*
15703 TGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
15768 TCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
15833 AAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTC
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
15898 TTTATGCATGCCAACAAAAATACAAGGATCACGACTACGAAGTTTGGGGCCAAAACCCCTTCCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * * * *
15963 AAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTTCAAAAATCGTGAAAAATAAAAAATGATTC
451 AAAAATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTC
** * *
16028 GTCTTGCCATGAAACTTCACGTGAAGGCTTAACAGACCATTGCATGAATTTACAAGCC-TCTAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAA
* *
16092 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGG
579 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
16157 CTTAG-GCATCCCGTCTCTCTGGCCGGTGTAATGCCCGCCCGCCTACCTGCCCGCTCGTTTCGTC
644 CTT-GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTG-C--CC-GCCCGCTCGTTTCGTC
** * ** * **
16221 AATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGGACTGGACCAAGGGTTGCGATA
704 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTA-AACCAGACCGAGGGTTGCGGCA
* * * *
16285 GCAGGATCGACAGCACGCAGAGGGGCACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCCGG
768 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
16350 TCGGCTGAACACCCGCACGCTCGTTTCG-CGG--G---T-----T--G-A---C-TT---AG---
833 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
16391 --
898 AA
* * **
16391 GCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** **
16456 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
** * * * *
16521 ACCTGACCGATGGCATTGGGGTTCTGGCGATCGGGAGGGTC-GGGGGGTGTGCGCGCATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGACGGGGGGGTGTGCGCACATGATGTG
16585 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16650 ACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16715 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
16780 TGCATGCTAACAAAAATACAAGGATCATGTCTACCATGTTTGATG-CAAGAACTCCTTTCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-AACTCCTTTCGAAAA
** * * ** *
16844 AATTTTAAAAAATCTTAAATCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
16909 CGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATAGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
16974 ATTGGCATGGAGAAATACGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * *
17039 GCATCTCGTCTCTCTGGCCGACGTAGTCGCCCACCCCCCCCGTACCGCTCGTTTCGGCGGTTGG-
649 GCATCCCGTCTCTCTGGCCGGCGTAGT-GCCC-GCCTGCCCG-CCCGCTCGTTTCGTCGGTTGGC
* * * * * *
17103 TTAGGCATACGGAGTTCATTCCCCAAGTCCTAAGATCACACAAGACTGAGGGTTGTGACAGCCAG
711 TTAGGCATACGGAGTTCATT-CCC-AGT-CTAAGATTAAACCAGACCGAGGGTTGCGGCAG-CAG
* * * * * * * ** * *
17168 GCATCAGTAGCATGTAGAAGGGGACCCGATCGATCCCTGGCTTATGCATCCCGCCCCTCTCGCTG
772 G-ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
17233 CCTGAGCGCCCACACGCTCATTTCGT--G-TG---T-----T-----G---A----C--T-TAA
836 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
17271 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
17336 CTCGGGGATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-TCGGAAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGG-AGCATCGCCGGAG
* * ** ** *
17400 AACCTGACCAGCGACATTGGGGTTCCGACGATATAGGGGCCCGGGGGGGTGTGCGCACATAATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGAT-CGGGGGGACGGGGGGGTGTGCGCACATGATGT
* * * *
17465 GCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACTTCCAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17530 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17595 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17660 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAA
* * * * * * *
17725 AAAGTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAGTAAAAAACAAATCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
17790 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
17855 CATTGGCACGTAAAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
17920 CGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * *
17985 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGTGTT-----------AT-GG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* *
18038 CAGCACCCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
18103 GCCCGCACGCTCGTTTCCG-GGGTTGACTTAGGCAAACGAAGTTCATTCCCAGTCTAA
843 ACCCGCACGCTCGTTT-CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
18160 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
18225 CTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCCGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * * * * * *
18290 ACCTGACCGTCGTCATT-GGTTTTCGACGATTGAGGGGGCCGGGGGTGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGACGGGGGGGTGTGCGCACATGATGTG
18354 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
18419 ACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
18484 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTATCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
18549 TGCATGCCAGCAAAAATTCAAGGATCACGTCTACTATGTTTGGGACCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
18614 ATTTTAAAAAAACCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
18679 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *** * *
18744 CTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** *
18809 CGTCCTATCTCTCTGGCCGGCGTAGTGCCGACCCGCCTGTCCGCCCATCCGCCCGCCCGTCTGCC
650 CATCCCGTCTCTCTGGCCGGCGTAGT---G-CCCGCC--T--G--C--CCGCCCGCTCGT-T---
* * * * * *
18874 CGCCCGCTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGG
699 ---TCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGG
* * * * * *
18939 TTGCTGCAGCAGGATTGGCAGCACACAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCAC
760 TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * * *
19004 CCCTCTGGCCAGCTGAACACCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
825 CCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
19069 CCCAGTCTAA
890 CCCAGTCTAA
* * * * ** *
19079 GCATACGGAGTTCATTCCCAGTCTAAGAACAGACTGGACCGAGGGTTGTAGAAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
19144 CTCCGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGCGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * ** * ** *
19209 ACCTAACCGACGGCATTGTGGTTCCGGGGATTAGGGGGG-CCAGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGACGGGGGGGTGTGCGCACATGATGTG
** * *
19273 CGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
19338 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
19403 GGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
19468 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCC-TTCTGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAA
* * * * *
19532 AATTTTAAAAAATCTCAAACCGCAGAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
19597 TGCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19662 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
19727 GCATCCCGTCTCTTTGGTCGACGTAGTGACCGCCCGCTCGGCCGCCCGCTCATTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CGC-CT-GCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
19792 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCCA-ACTGAGGGTTACGACAGCAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTA-AACCAGACCGAGGGTTGCGGCAGCAGGA
* * ** * * * * *
19856 TTGGCAACACAAAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATTCTGCCCCTCTGGTCGGTT
774 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
19921 GAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * * * *
19982 GCAAATGGAGTTAATTTCCAGTCTAAGATCAGACC-AGACCGAGGTTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
20046 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * * * *
20111 AACCTGACCGACGGCATTGGGGTTCCGGCAATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGACGGGGGGGTGTGCGCACATGATGT
* *
20176 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
20241 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
20306 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
20371 GTGCATGCCAACAAAAATACAAGGATCAGGTCTACCATGTTTGGGGCCAAAACTCC-TTCTGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
* * * * * **
20435 AATTTTTAAAAAATC-CTGAACCGT-AAAAGTATAAAAAATCATGAAAAATAGAAAATGAGGCAA
453 AAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * **
20498 CTTGCCATGGAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTTGAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
20563 GCACTGGCATGTA-AAATATGAAGATGTGCCTAAATCCACCTACCACTCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
20627 GCTCATCCCGTCTCTCTGGCCGCCGTATTGCCCGTCCATTCGCCCGTCCGCTCGTTTTGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC--T-GCCCGCCCGCTCGTTTCGTCGGTT
* * * * * **
20692 GGATTAGGCATACGGAGTTCATTCCCAGTATAAGCTCAGACTGGACCGAGGGTTGCGGCAGCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGGTTGCGGCAGCAGG
* * * * * * *
20757 ATCGGTAACACGCAGAGGGGGACCTGATCGATCTCCGGCTTACGCATCCCGCCCCTTTGGCCGGC
773 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
20822 TGAGCACCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCACACGAAGGTCATTCCCAGTCTAA
838 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
20884 GCATACGAAGTTCATTCCCAGTCTCAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
20949 CTCGGACATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG------CA-C----CATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * ** * *
21003 ACCTGACCGACGGCATTAGGGTTCCGGTGATCAGGGGGA--GGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGACGGGGGGGTGTGCGCACATGATGTGC
* *
21066 GATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CC-CATCTAAACCTCGAAAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCAC
*
21129 ACCCCCTTAAAGAGCATTTGAGA-TTTAGTCAAGATTTGCTGTGCCAGTAGCCATTAAAGTGTCT
260 ACCCCCTTAAAGAGCATTTGAGATTTTA--C-AGGTTTGC--TGCCAGTAGCCATTAAAGTGTCT
* * * * *
21193 GAAATAGGGACAC-TTTATCAAATGGTCACAAAATCTCTTGTACGCATCGAGTTTTTAGCAGAAT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAA--TCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * *
21257 TGTTTTGTTACATGCCAACAGAAATACAAGAATCACGTCTACCAAGTTTGGGGTCAAAATTTTCC
383 TTTTTTG-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA--CTCC
* * * * *
21322 -TTCGAAAAAATTTTAGAAAAATC-CCAACTG-CAAAACTTTCAAAAATCAT-AAAAATAAAAAA
445 TTTCGAAAAAATTTTA-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * **
21383 CGAGTCATCTTG-CATGGAACTTCATTATGAA-GCTTAAGGGACCATTGTATGAA-TTACAAGCC
509 CGAGTCGTCTTGCCATGAAACTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
21445 ATAAAAATGGCATTGGAACGCAAAAATA-GAAGATGTGCCTAAA-CCA-CTA-CAGCCC-ATCGA
573 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGA
* *
21505 TCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCACCCGCTCGT
637 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-T--GCCCGCCCGCTCGT
* * * * * *
21570 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTG
698 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGGTTG
* *** * * * * *
21635 TGGCAGCAGGATCGATGGCACGCCGAGGGGGACCCGATCGATCCTCGACTTACGCATCCCGCCCC
763 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
*** * * ** * * * * * *
21700 TCTGGCCGGCTGAGTGTCTGGACAATCATTTCATGGGTTGGCTTAGGCATATGGAGTT-ATTGCC
828 TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCC
21764 AGTCTAA
893 AGTCTAA
* * * * ** *
21771 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGTAGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
21836 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCACCGGTGCACCAT--------CAT---CAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * * * * *
21890 ACCTGACCGACGGTATTGGGGTTCCGGCGATCAGGGGAACCGGGGGGTGTGTGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGACGGGGGGGTGTGCGCACATGATGTGC
* * *
21955 GATGGTTGCTGGTACTTGGCCCTTATATTGGCCGCTTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
22020 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
22085 GGGACACTTTTTT-AAATGGTCACAAAATCTTTTACACTTCGAGTTCTTAGCTAAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
22149 GAATGCCAAAAAAAATACAAGGATCACGTTTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * *
22214 TTTAAAAAAAACCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
22279 CAATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
22344 TGGCACGCAGAAATATGAAGA--TGCCT-AACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
22406 ATCCCGTCTCTTTGGCCGACGTAGTG--C-CC-GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGG
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * * * **
22467 CATTCGGAGTTCATTCCCAGTCTTAGATCAGACCGGACCAAGGGTTGTGGCAACAAGATCGATAG
716 CATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * *** *
22532 CACACAGAGGGGGACCTGACCGATCATTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG-AGC
781 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-C
* * * *
22596 CCGCACGCTCGTTTCGTGGATAGACTTAGGCATGCGAAGTTCATTACCAGTCTAA
845 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
22651 GCATAAGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCTAATCTAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---C----C---GA----A-C---C
* * * * *
22716 TGACGGTTGCGGTAGTACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
41 -GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** ** * * *
22781 CACCATTGCCGGAGCATCATCGGAGAACCTGACCGGTGGCATT-GGGTTTCGACGATCGGGGGGG
105 CACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGA
* * * * * *
22845 CCGGGGGGTGTGCACAAATGATGTGCGATGGGTGCTAGTACTTGGCCTTTATATTGGCCCCTTAT
170 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
22910 CCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
22975 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
23040 TCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAGGTCTACCATGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
23105 TGGGGCTAAAACTCC-TTCTGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTATCAAAAAT
430 TGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAAT
* * * * *
23168 CAAGAAAAATAGAAAACGAGTCGGCTTGCCATCAAACTTCACGTGAACGCTTAAGGGAACATTGT
493 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
23233 ATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
23297 TACCACCCTATCGATCCACGGCTTACGCATCCCGTTTCTCTGGCCGGCGTATTGCCCGCCCACCC
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCT
* *
23362 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
684 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAAC
** * ** ** * *
23427 CAGATTGAGGGTTGCGGCAGTAGGATCGAAAGCACATAGAGGGGGACCTGACCGATCTCCGGCTT
749 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * *** *
23492 GCGCATCCCTCCCCTCTGGCCGGTTGAGCGTGCGCACGCTCGTTTCGTGGGTTGACTTAGGCACA
814 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
23557 C-AGAGTTCATTCACAGTCTAA
879 CGA-AGTTCATTCCCAGTCTAA
* * * * * * **
23578 GTATACGGAGTTCATTCCCAATCTAAGATCGGACTGGATCGAGGGTTACAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
23643 CTCGGGCATGTACTGGTGTCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * * * * **
23708 ACCTTACCGGCCGCTTTAGGGTTCCGGCGATCAGGGGGGTC-GGGGGGTGTGCATACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGACGGGGGGGTGTGCGCACATGATGTG
*
23772 CGAT-GGTGCTGGTACTTGGCCCTTATATTGGTCCCCTAT-CCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
23835 AC
260 AC
Statistics
Matches: 11096, Mismatches: 1380, Indels: 637
0.85 0.11 0.05
Matches are distributed among these distances:
863 69 0.01
864 4 0.00
865 1 0.00
866 2 0.00
869 1 0.00
873 13 0.00
875 21 0.00
876 59 0.01
877 372 0.03
878 314 0.03
879 306 0.03
880 295 0.03
881 691 0.06
882 813 0.07
883 112 0.01
884 59 0.01
885 42 0.00
886 106 0.01
887 540 0.05
888 565 0.05
889 382 0.03
890 154 0.01
891 130 0.01
892 69 0.01
893 71 0.01
894 31 0.00
895 16 0.00
896 2 0.00
897 308 0.03
898 150 0.01
899 17 0.00
900 157 0.01
901 759 0.07
902 806 0.07
903 463 0.04
904 825 0.07
905 124 0.01
906 567 0.05
907 225 0.02
908 1 0.00
910 4 0.00
911 11 0.00
914 3 0.00
915 2 0.00
916 182 0.02
917 259 0.02
918 7 0.00
919 752 0.07
920 15 0.00
921 3 0.00
923 1 0.00
924 1 0.00
925 1 0.00
926 5 0.00
927 208 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGACGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:13730 original size:26 final size:26
Alignment explanation
Indices: 13701--13753 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13691 GTTGACTTAG
* *
13701 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13727 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13753 G
1 G
13754 ATCGCACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15514 original size:26 final size:26
Alignment explanation
Indices: 15484--15536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15474 GTTGACTTAG
15484 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15510 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15536 G
1 G
15537 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19082 original size:26 final size:26
Alignment explanation
Indices: 19053--19105 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19043 GTTGACTTAG
19053 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19079 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19105 G
1 G
19106 AACAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19754 original size:919 final size:902
Alignment explanation
Indices: 10149--23836 Score: 15360
Period size: 882 Copynumber: 15.3 Consensus size: 902
10139 GTTGACTTAG
* * * *
10149 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACCGAGGGTTGC-GACAACACATGCTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGATCGAGGGTTGCAGA-AGCACATGCTG
* *
10212 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAA
64 GGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGA
* * * * ** *
10277 GAACCTGACAGGCGGCATTGGGGTTCCGACGATC---GGGG--GGGTGTACGTG--CATGATATG
129 GAACCTGACCGACGGCATT-GGGTTCCGGCGATCAGGGGGGCCGGGGGTGTGTGCACATGATGTG
* *
10335 TGATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* **
10400 ACCCCCTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTAACAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
10465 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGGTGAAGTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
* * * * * * *
10530 TGCATGCCAACAAAAATGCAAGGACCATGTCTGCCACGTTTGGGGCCAAAAATCCTTCTAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAA
** * *
10595 ATTTTAAAAAATCTCGAACCAAAAAAAGTTTCAAAAATCGA-GAAAAATAAAAAATGAGTCGTCT
453 ATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTCT
* * *
10659 TGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGTCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
10724 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
10789 CCATCCCATCTCTCTGGTCGGCGTAGTGC-C-T--G---TCCGCCCGCTC-AT--TTCATCAGTT
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGCTCGTTCGTCGGTT
* * * * * * *** * * *
10844 CGTTTAGGCATACGAAGTTCATTACCAGTGTAAGATCAGACCGAACTGTGGGTTACAGAAGCAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCTGCAGCAGG
** * * * ** * * *
10909 ATCGATAGCACGCAGAGGGGGACCCGGCCGATCCTCGATTTACTCATCCCACCCCTCTGGCCGGC
776 ATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * **
10974 TGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGCTCATTCATAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
11036 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
* ** **
11101 CTCGGGCATGTGCTGGTGCTACATTTTTCTTCACCGGGG------CA-C----CATCGCCGGAGA
66 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * * **
11155 ACCTGACCGGCCGTATTGGGGTTCCGGAGATGTCA--GGGGCCGGGGGTGTACGCACATGATGTG
131 ACCTGACCGACGGCATT-GGGTTCCGGCGA--TCAGGGGGGCCGGGGGTGTGTGCACATGATGTG
* * *
11218 CGATGGGTGCTGGTACTTGGCCCTTAGATT-GCCCCCTATCCCTTATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
11282 ACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
11347 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
* * * * * * * **
11412 TGCATGCCAAAAAAAATAAAAGGATCACATCTACAAAGTTTGGAGCTAAAACTCCTTCCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
11477 AGTTTAAAAAATCTAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAACCGAGTCGTCTT
453 ATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
11542 GCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
11607 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCATGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
11672 CATCCCGTCTTTCTGGCTGGCGTAGTGCCCGCCCG-C--CCGCCCGTCCGCTCGTTTCATCGGTT
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGCTCG-TTCGTCGGTT
* ** * * * *
11734 GGCTTAGGCATACAGAGTTCATTCATAGTCTAAGATCCA-ACCAGATCAAGGGTTGCGGCATCAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCGGACCAAGGGTTGCTGCAGCAG
* * ** * * * * **
11798 GATCGACAGCACGCAGA-GGGGACCCGGGCGATCCCCGGCTTGCGCGTCTCACCTCTAAGGCCGG
775 GATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * ** * *
11862 CTTAGCACCCGCACGCTTGTTTTATGGGTTGACTTAGGCATACGGAGTGCATTCCTAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * **
11925 ACATATGGAGTTCATTCCCAGTCTAAAATCGAACCAGACCGAGGGTTGCGGCCGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
* ** * * * ** * *
11990 CT-CGACCATGTGCTGGTGCCATAATTTTCTTCG-CTAGGACACCAT-AGTTGGAGCATCACTGG
66 CTCCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCA-CCGGAGCATCGCCGG
* * * *
12052 AGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGCGGAACGGGGGGGTTGTGCGCACATG
128 AGAACCTGACCGACGGCATT-GGGTTCCGGCGATCAGGG-GG-GC-CGGGGG-TGTGTGCACATG
* * * *
12116 ATGTGAGATAGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
188 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
12181 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
253 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
12246 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
318 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
* * * *
12311 TTTTGTGCATGCCAAGAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TC
383 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCT-
** *
12375 GAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
447 GAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
12440 CGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
511 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
12505 ATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGA
576 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * *
12570 CTTACGCATCTCGTCTCTCTGGCCGATGTAGT--GC--CCGCC-T--GCCCACCCGCTCGTTTCA
641 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGCTCG-TTCG
** ** * * * * *
12628 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGGTCAGACCGAGGGTTACGGT
705 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCTGC
* * * * * * *
12693 AGTAGGAACGGCAGCACGCAGAGGAGGACCCGATCGATCCGCGGCTTGCGCATCTCGCCCCTCTG
770 AGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * * *
12758 GCCGGTTGAGCACCTGCACGCTCGTTTCGTTGGTTGGCTTAGACATACGAAGTTCATTCCCAGTC
835 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
12823 TAA
900 TAA
* * * * **
12826 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
* ** *
12891 CTCAGGCATGTGCTGGTGTTGCATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCGCCGGAGA
66 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * * *
12956 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGAGGAACGGGGGGGTTGTGCGCACATGATG
131 ACCTGACCGACGGCATT-GGGTTCCGGCGATCAGGG-GG-GC-CGGGGG-TGTGTGCACATGATG
* * *
13020 TGAGATAGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13085 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13150 ATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 ATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
* * * * *
13215 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTCGGGGCCAAAACTCCTT-TCAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCT-GA
* * * *
13279 AAAAATTTAAAAAAATCCTGAACCGCAAAACGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCG
449 AAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
13344 TCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
13409 AGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
578 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
13474 TGCGCATCCCGTCTCTCTGGCCGACGTAGT--GC--CCGCC-T--GCCCGCTCGCTCGTTTCGTC
643 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGCTCG-TTCGTC
* * ** * * *
13532 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGAT-AGGACC-AAGCTGAGGGTTACGGT
707 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGA-CCAAGGGTTGCTGC
* * * * *
13595 AGTAAGATCGACAGCACGCAGA-GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTG
770 AGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
** *
13659 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTTATTCCCAGTC
835 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
13724 TAA
900 TAA
* * * * * *
13727 GCATACGGAGTTCATTCCCAGTCTAAGATCGCACTAGACCGAGGGATGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
* * * * * * * *
13792 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGCGGTACCATCATCGGAGAATTG-CGAGAG
66 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG-GAG
* * ** * * *
13856 AACCTGATCGA-GAGCATTGGGGTTTCGATGATCGGGGGGGCAGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACG-GCATT-GGGTTCCGGCGATCAGGGGGGCCGGGGGTGTGTGCACATGATGTG
*
13920 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
13985 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
14050 GGTGACGCTTTTTTCAAACGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
** * * * *
14115 TGCATGCTGACAAAAATACAAGAATCATGTCTACC-TAGTTTGGGGCCGAAACTCCTTCCGAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAT-GTTTGGGGCCAAAACTCCTTCTGAAAA
* * * **
14179 ACTTTTAAAAAATCTCGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
14244 TGCCATGAAACTTCATGTGAAGGCTTAAGGAACAATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
14309 ATTGGCATGCAGAAATATGAAGATTTGCCTCAGCCCACCTACCACCCTATCGGTCCACGGCTTGC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** ** * *
14374 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCCCGCTCGTTTTGGCGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCG-CCATCCGCCCGCCCGCTCG-TTCGTCGG
* * ***
14439 TTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTG-TGGCAGC
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCT-GCAGC
* * *** * * * * *
14503 AGGATCAGTAGCATGTAGAAGGGGACCCGACCGATCCCTGGCGTACGCATCCCACCCCTCTGGCC
773 AGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
14568 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAA
838 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
14633 G-AT-C--A----A-----A--C-CAGA-CCGA--GGAT---GCG--GC---AGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
* ** * *
14671 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGA
66 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* ** * * * *
14736 ACCTGACCGGCAACATTGGTGTTTCGGTGATC-GGAGGGGTCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGG-GTTCCGGCGATCAGG-GGGG-C-CGGGGGTGTGTGCACATGATGT
* * * *
14800 GCGATGGGTGCTAGTACTGGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCCAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
14865 CACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTATGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
14930 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
* * * **
14995 GTGCATGCCAA-AAACAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAA
387 GTGCATGCCAACAAA-AATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTT-CTGAA
* * * * * *
15059 AAAATTTAAAAAAATCTTGAACCGCAAGAGGTTTCGAAAATCATGAAAAATAGAAAGCGAGTCGT
450 AAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
15124 CTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
15189 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGGTCCACGGCTT
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
15254 GCGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--CCGTCCACCCGCTCGTTTCATCG
644 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGCTCG-TTCGTCG
* * * * * ** *
15315 GTTGGTTTGGGCATACGGAGTTCAGTCCCAGTCTAAGATTAGACTGGACTGAGGGTTAC-GACAG
708 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCTG-CAG
* * ** **** **
15379 CAGAATCGGTAGCACGTAGATCAAGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTCTGGC
772 CAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
** * * * *
15444 TAGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
837 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
15509 A
902 A
* * * * * *
15510 GCATACGGAGTTCATTCCTAGTCTAAGATC-GAATCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGATCGAGGGTTGCAGAAGCACATGCTGG
** ** * ** * * * *** *
15574 GCTTGGGCATGTGCTACTGTCATATATTTCTTCATCGAGGCACCATCGTAGGAGCATCGTCGGAG
65 GCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * *
15639 AACCTGACCGACGGCATTGGGGTTCCGGCGATGAAGGGGGCCGGGAGAGGGTGTGCGCACATGAT
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCAGGGGGGCC--G-G-GGGTGTGTGCACATGAT
*
15704 GTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
15769 CACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15834 AATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTG-AATTTC
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTT-
* * * * * *
15898 TTTATGCATGCCAACAAAAATACAAGGATCACGACTACGAAGTTTGGGGCCAAAACCCCTTCCGA
384 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGA
* * * * * *
15963 AAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTTCAAAAATCGTGAAAAATAAAAAATGATTC
449 AAAAATTTTAAAAAATC-CGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTC
** * *
16028 GTCTTGCCATGAAACTTCACGTGAAGGCTTAACAGACCATTGCATGAATTTACAAGCC-TCTAAA
512 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAA
*
16092 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGG
576 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
16157 CTTAG-GCATCCCGTCTCTCTGGCCGGTGTAATGCCCGCCCGCC-T--ACCTGCCCGCTCGTTTC
641 CTT-GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGCTCG-TTC
** *
16218 GTCAATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTGGACCAAGGGTTGC-
704 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCAAGGGTTGCT
* * * * *
16281 GATAGCAGGATCGACAGCACGCAGAGGGGCACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCT
768 G-CAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
16346 CCGGTCGGCTGAACACCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCA
832 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
16411 TTCTAA
897 GTCTAA
* *
16417 G-AT-C-G-G---A---CC-G-----GA-C---C--GA--G-GGTTATG--GCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGT-TGCAGAAGCACATGCTGG
* * * ** **
16455 GCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAG
65 GCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * * * *
16520 AACCTGACCGATGGCATTGGGGTTCTGGCGATC-GGGAGGGTCGGGGGGTGTGCGCGCATGATGT
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCAGGG-GGG-CCGGGGGTGTGTGCACATGATGT
16584 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16649 CACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
16714 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
* * * **
16779 ATGCATGCTAACAAAAATACAAGGATCATGTCTACCATGTTTGATG-CAAGAACTCCTT-TCGAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAA-AACTCCTTCT-GAA
** * ** *
16842 AAAATTTTAAAAAATCTTAAATCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
450 AAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
16907 CTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATA
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
16972 GCATTGGCATGGAGAAATACGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
17037 GCGCATCTCGTCTCTCTGGCCGACGTAGT-CGC--CCACC--CCCCCCGTACCGCTCGTTTCGGC
644 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCG-CCCGCTCG-TTCGTC
* ** **
17097 GGTTGG-TTAGGCATACGGAGTTCATTCCCCAAGTCCTAAGATCACACAAGACTGAGGGTTG-TG
707 GGTTGGCTTAGGCATACGGAGTTCATT-CCC-AGT-CTAAGATCAGACCGGACCAAGGGTTGCTG
* * *** * * * **
17160 ACAGCCAGGCATCAGTAGCATGTAGAAGGGGACCCGATCGATCCCTGGCTTATGCATCCCGCCCC
769 -CAG-CAGG-ATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * * * *
17225 TCTCGCTGCCTGAGCGCCCACACGCTCATTTCGTGTGTTGACTTAAGCATACGGAGTTCATTCCC
831 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
17290 AGTCTAA
896 AGTCTAA
** *
17297 G-AT-C-G-G---A----C---C---GA----AC-----CGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
* * * * *
17336 CTCGGGGATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-TCGGAAGCATCACCGGAG
66 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGG-AGCATCGCCGGAG
* * * * * *
17400 AACCTGACC-AGCGACATTGGGGTTCCGACGAT-ATAGGGGCCCGGGGGGGTGTGCGCACATAAT
130 AACCTGACCGA-CGGCATT-GGGTTCCGGCGATCA-GGGGGGCC--GGGGGTGTGTGCACATGAT
* * * *
17463 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACTTCCAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
17528 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
17593 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
* * * *
17658 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTG-A
* * * * * *
17723 AAAAAGTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAGTAAAAAACAAATCG
449 AAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
17788 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
17853 GGCATTGGCACGTAAAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCT
578 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
17918 TGCGCATCCCGTCTCTCTGGCAGGCGTAGT--GC--CCG-C--CCGCCCACCCGCTCATTTCATC
643 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGCTC-GTTCGTC
*
17976 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GA----ACC---GG--ACTG-AG
707 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCTGCAG
* * * *
18030 -TGTTAT-GGCAGCACCCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
772 CAG-GATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
18093 CCGGCTGAGCGCCCGCACGCTCGTTTCCG-GGGTTGACTTAGGCAAACGAAGTTCATTCCCAGTC
836 CCGGCTGAGCGCCCGCACGCTCGTTT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
18157 TAA
900 TAA
* * * *
18160 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
* * *
18225 CT-CGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCCGGGCACCATCACCGGAGCATCACCGGAG
66 CTCCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * * * * *
18289 AACCTGACCGTCGTCATTGGTTTTCGACGAT-TGAGGGGGCCGGGGGTGTGTGCACACATGATGT
130 AACCTGACCGACGGCATTGGGTTCCGGCGATCAG-GGGGGCCGGGGGTGTGTG--CACATGATGT
18353 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
18418 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
18483 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTATCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
* * * * *
18548 GTGCATGCCAGCAAAAATTCAAGGATCACGTCTACTATGTTTGGGACCAAAACTCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * *
18613 AATTTTAAAAAAACCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCT
452 AATTTT-AAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
18678 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * *
18743 ACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
18808 GCGTCCTATCTCTCTGGCCGGCGTAGTGCCGACCCGCCTGTCCGCCCATCCGCCCGCCCGTCTGC
646 GCATCCCGTCTCTCTGGCCGGCGTAGT---G---CG-C-GTCCG-CCATCCGCCCGCCCG-CT--
** *
18873 CCGCCCGCTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGG
699 -CGTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGG
* * * *
18938 GTTGCTGCAGCAGGATTGGCAGCACACAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCA
762 GTTGCTGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * *
19003 CCCCTCTGGCCAGCTGAACACCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
827 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
19068 TCCCAGTCTAA
892 TCCCAGTCTAA
* * * *
19079 GCATACGGAGTTCATTCCCAGTCTAAGAACAGACTGGACCGAGGGTTGTAGAAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
* * *
19144 CTCCGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGCGCACCATCACCGGAGCATCGCCGGAGA
66 CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * *
19209 ACCTAACCGACGGCATTGTGGTTCCGGGGATTAGGGGGGCCAGGGGGTGTGTGCACATGATGTGC
131 ACCTGACCGACGGCATTG-GGTTCCGGCGATCAGGGGGGCC-GGGGGTGTGTGCACATGATGTGC
** * *
19274 GATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
19339 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
19404 GGGACACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGT
* * *
19469 GCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
19534 TTTTAAAAAATCTCAAACCGCAGAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
19599 CCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
19664 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
19729 ATCCCGTCTCTTTGGTCGACGTAGTGAC-CGCCCG-C-T-CGGCCGCCCGCTCATTTCGTCGGTT
648 ATCCCGTCTCTCTGGCCGGCGTAGTG-CGCGTCCGCCATCCGCCCGCCCGCTC-GTTCGTCGGTT
* ** ** *
19790 GGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCCAACTGAGGGTTAC-GACAGCAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCTG-CAGCAG
* * * * * * *
19854 GATTGGCAACACAAAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATTCTGCCCCTCTGGTCGG
775 GATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
19919 TTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** * * *
19982 GCAAATGGAGTTAATTTCCAGTCTAAGATCAGACCAGACCGAGGTTTAC-GACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGA-AGCACATGCTGG
* * ** * *
20046 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAG
65 GCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * *
20111 AACCTGACCGACGGCATTGGGGTTCCGGCAATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCAGGGGGGCC--GGGGGTGTGTGCACATGATGT
* *
20176 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
20241 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
20306 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGTTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
*
20371 GTGCATGCCAACAAAAATACAAGGATCAGGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * * * * **
20436 ATTTTTAAAAAATCCTGAACCG-TAAAAGTATAAAAAATCATGAAAAATAGAAAATGAGGCAACT
452 AATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * **
20500 TGCCATGGAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTTGAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
20565 ACTGGCATGTA-AAATATGAAGATGTGCCTAAATCCACCTACCACTCTATCGATCCACGGCTTGC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
20629 TCATCCCGTCTCTCTGGCCGCCGTATTGCCCGT---CCATTCGCCCGTCCGCTCGTTTTGTCGGT
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGCTCG-TTCGTCGGT
* * * * * *
20691 TGGATTAGGCATACGGAGTTCATTCCCAGTATAAGCTCAGACTGGACCGAGGGTTGCGGCAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCTGCAGCAG
* * * * * * * *
20756 GATCGGTAACACGCAGAGGGGGACCTGATCGATCTCCGGCTTACGCATCCCGCCCCTTTGGCCGG
775 GATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
20821 CTGAGCACCCGCCCGCTCGTTTCGTGGGTTGACTTAGGCACACGAAGGTCATTCCCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
20884 GCATACGAAGTTCATTCCCAGTCTCAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
* *
20949 CT-CGGACATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG------CA-C----CATCGCCAGAG
66 CTCCGG-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* **
21002 AACCTGACCGACGGCATTAGGGTTCCGGTGATCAGGGGGAG--GGGGGTGTGCACACATGATGTG
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCAGGGGG-GCCGGGGGTGTGTGCACATGATGTG
* *
21065 CGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CC-CATCTAAACCTCGAAAACTCA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCA
*
21128 CACCCCCTTAAAGAGCATTTGAGA-TTTAGTCAAGATTTGCTGTGCCAGTAGCCATTAAAGTGTC
257 CACCCCCTTAAAGAGCATTTGAGATTTTA--C-AGGTTTGC--TGCCAGTAGCCATTAAAGTGTC
* * * * *
21192 TGAAATAGGGACAC-TTTATCAAATGGTCACAAAATCTCTTGTACGCATCGAGTTTTTAGCAG-A
317 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAA--TCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * * *
21255 ATTGTTTTGTTACATGCCAACAGAAATACAAGAATCACGTCTACCAAGTTTGGGGTCAAAATTTT
380 ATT-TTTTG-TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAA--CT
* * * *
21320 CCTTC-GAAAAAATTTTAGAAAAATCCCAACTGC-AAAACTTTCAAAAATCAT-AAAAATAAAAA
441 CCTTCTGAAAAAATTTTA-AAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * **
21382 ACGAGTCATCTTG-CATGGAACTTCATTATGAA-GCTTAAGGGACCATTGTATGAA-TTACAAGC
505 ACGAGTCGTCTTGCCATGAAACTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
21444 CATAAAAATGGCATTGGAACGCAAAAATA-GAAGATGTGCCTAAA-CCA-CTA-CAGCCC-ATCG
569 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCG
* * * *
21504 ATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCGTCCGCCCACCCGC
633 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGC
* *
21566 TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAA-
698 TCG-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC-AAG
*** * * * * * *
21630 GGTTG-TGGCAGCAGGATCGATGGCACGCCGAGGGGGACCCGATCGATCCTCGACTTACGCATCC
761 GGTTGCT-GCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * * ** * * * *
21694 CGCCCCTCTGGCCGGCTGAGTGTCTGGACAATCATTTCATGGGTTGGCTTAGGCATATGGAGTT-
825 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
21758 ATTGCCAGTCTAA
890 ATTCCCAGTCTAA
* * * *
21771 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGTAGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
* ** * *
21836 CT-CGAGCATGTGCTGGTGCTGCATTTTTCTTCACCGGTGCACCAT--------CAT---CAGAG
66 CTCCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* **
21889 AACCTGACCGACGGTATTGGGGTTCCGGCGATCAGGGGAACCGGGGGGTGTGTGCACATGATGTG
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCAGGGGGGCC-GGGGGTGTGTGCACATGATGTG
* * *
21954 CGATGGTTGCTGGTACTTGGCCCTTATATTGGCCGCTTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
22019 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
22084 GGGGACACTTTTTT-AAATGGTCACAAAATCTTTTACACTTCGAGTTCTTAGCT-AAATTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAA-TTTTTT
* * * *
22147 GTGAATGCCAAAAAAAATACAAGGATCACGTTTACCATGTTTGGGGCCAAAACTCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
22212 AATTTAAAAAAAACCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTT-TAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
22277 TGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
22342 ATTGGCACGCAGAAATATGAAGA--TGCCT-AACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
22404 GCATCCCGTCTCTTTGGCCGACGTAGT--GC--CCG-C--CCGCCCGCTCG-T--TTCGTCAGTT
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGCTCGTTCGTCGGTT
* * * *
22459 GGCTTAGGCATTCGGAGTTCATTCCCAGTCTTAGATCAGACCGGACCAAGGGTTG-TGGCAACAA
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCT-GCAGCAG
** * *** *
22523 GATCGATAGCACACAGAGGGGGACCTGACCGATCATTGGCTTGTGCATCCCGCCCCTCTGGCCGG
775 GATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
22588 CTGAGAGCCCGCACGCTCGTTTCGTGGATAGACTTAGGCATGCGAAGTTCATTACCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
22651 GCATAAGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCTAATCTAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G----------A-C-----T-GGATC-GA-
* * * * * *
22716 TGACGGTTGCGGTAGTACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
43 -G--GGTTGCAGAAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** ** ** * * *
22781 CACCATTGCCGGAGCATCATCGGAGAACCTGACCGGTGGCATTGGGTTTCGACGATCGGGGGGGC
105 CACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGTTCCGGCGATCAGGGGGGC
* * *
22846 CGGGGG-GTGTGCACAAATGATGTGCGATGGGTGCTAGTACTTGGCCTTTATATTGGCCCCTTAT
170 CGGGGGTGTGTGCAC--ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
22910 CCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
233 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
22975 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACT
298 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
23040 TCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAGGTCTACCATGTT
363 TCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTT
* *
23105 TGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTATCAAAAATCA
428 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCA
* * * * *
23170 AGAAAAATAGAAAACGAGTCGGCTTGCCATCAAACTTCACGTGAACGCTTAAGGGAACATTGTAT
492 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
23235 GAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTA
557 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
23299 CCACCCTATCGATCCACGGCTTACGCATCCCGTTTCTCTGGCCGGCGTATTGCCCG--C-CCACC
622 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATC
23361 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
687 CGCCCGCCCGCTCG-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* *** * * ** * * *
23426 CCAGATTGAGGGTTGCGGCAGTAGGATCGAAAGCACATAGAGGGGGACCTGACCGATCTCCGGCT
751 CCGGACCAAGGGTTGCTGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCT
* * ** *
23491 TGCGCATCCCTCCCCTCTGGCCGGTTGAGCGTGCGCACGCTCGTTTCGTGGGTTGACTTAGGCAC
816 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
23556 ACAGAGTTCATTCACAGTCTAA
881 ACGGAGTTCATTCCCAGTCTAA
* * *
23578 GTATACGGAGTTCATTCCCAATCTAAGATCGGACTGGATCGAGGGTTACA-ACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGA-AGCACATGCTGG
* * * * *
23642 GCTCGGGCATGTACTGGTGTCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCGCCGGAG
65 GCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * * * *
23707 AACCTTACCGGCCGCTTTAGGGTTCCGGCGATCAGGGGGGTCGGGGG-GTGTGCATACATGATGT
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCAGGGGGGCCGGGGGTGTGTGC--ACATGATGT
*
23771 GCGAT-GGTGCTGGTACTTGGCCCTTATATTGGTCCCCTAT-CCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
23834 CAC
257 CAC
Statistics
Matches: 11067, Mismatches: 1370, Indels: 715
0.84 0.10 0.05
Matches are distributed among these distances:
863 104 0.01
864 7 0.00
865 1 0.00
866 3 0.00
867 1 0.00
868 2 0.00
869 2 0.00
870 1 0.00
872 2 0.00
874 4 0.00
875 23 0.00
876 61 0.01
877 364 0.03
878 314 0.03
879 295 0.03
880 278 0.03
881 654 0.06
882 827 0.07
883 110 0.01
884 60 0.01
885 47 0.00
886 115 0.01
887 527 0.05
888 562 0.05
889 339 0.03
890 142 0.01
891 135 0.01
892 66 0.01
893 75 0.01
894 33 0.00
895 17 0.00
896 5 0.00
897 305 0.03
898 151 0.01
899 12 0.00
900 159 0.01
901 764 0.07
902 817 0.07
903 473 0.04
904 803 0.07
905 126 0.01
906 562 0.05
907 264 0.02
908 4 0.00
909 1 0.00
911 4 0.00
912 5 0.00
913 1 0.00
914 12 0.00
915 7 0.00
916 171 0.02
917 252 0.02
918 15 0.00
919 739 0.07
920 19 0.00
921 15 0.00
923 11 0.00
924 2 0.00
925 1 0.00
926 2 0.00
927 194 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGAAGCACATGCTGGG
CTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGTTCCGGCGATCAGGGGGGCCGGGGGTGTGTGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCGCGTCCGCCATCCGCCCGCCCGCTCGTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCTGCAGCAGGATCGG
CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:22662 original size:26 final size:26
Alignment explanation
Indices: 22633--22703 Score: 101
Period size: 26 Copynumber: 2.7 Consensus size: 26
22623 AGGCATGCGA
22633 AGTTCATTACC-AGTCTAAGCATAAGG
1 AGTTCATT-CCAAGTCTAAGCATAAGG
*
22659 AGTTCATTCCAAGTCTAAGCATACGG
1 AGTTCATTCCAAGTCTAAGCATAAGG
22685 AGTTCATTCCTAA-TCTAAG
1 AGTTCATTCC-AAGTCTAAG
22704 ATCGGATCAG
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
25 2 0.05
26 38 0.90
27 2 0.05
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
AGTTCATTCCAAGTCTAAGCATAAGG
Done.