Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168310.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23719
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:1269 original size:109 final size:106

Alignment explanation


    Indices: 1077--1272  Score: 293
    Period size: 109  Copynumber: 1.8  Consensus size: 106

       1067 AAACAATTTC

                    *                       *           **                   
       1077 GATCTTATGCTATTTTAGATTTTTTTTCTTTTTGTTTGTGCCATGTAATGCAGAATTTGACTGAT
          1 GATCTTATACTATTTTAGATTTTTTTTCTTTTCGTTTGTGCCATACAATGCAGAATTTGACTGAT

                  *      *                           
       1142 CTACCATGTAATATGCCTTCAATGCCTTTGCTTCTTCACAA
         66 CTACCACGTAATAGGCCTTCAATGCCTTTGCTTCTTCACAA

                                                                  *          
       1183 GATCTTATACTATTTTAGATTTTTTTTTTTCTTTTCGTTTGTGCCATACAATGCGGAATTTGACT
          1 GATCTTATACTATTTTAGA---TTTTTTTTCTTTTCGTTTGTGCCATACAATGCAGAATTTGACT

                   *                 
       1248 GATCTACTACGTAATAGGCCTTCAA
         63 GATCTACCACGTAATAGGCCTTCAA

       1273 ATGAGAATAC


Statistics
Matches: 79,  Mismatches: 8, Indels: 3
        0.88            0.09        0.03

Matches are distributed among these distances:
 106   18  0.23
 109   61  0.77

ACGTcount: A:0.22, C:0.17, G:0.14, T:0.46


Consensus pattern (106 bp):   
GATCTTATACTATTTTAGATTTTTTTTCTTTTCGTTTGTGCCATACAATGCAGAATTTGACTGAT
CTACCACGTAATAGGCCTTCAATGCCTTTGCTTCTTCACAA

Found at i:1732 original size:6 final size:6

Alignment explanation


    Indices: 1721--1764  Score: 52
    Period size: 6  Copynumber: 7.2  Consensus size: 6

       1711 TGACTTTTTT

                              *   *   *                        
       1721 TAATTA TAATTA TAATAA TTATTT TAAATTA TAATTA TAATTA T
          1 TAATTA TAATTA TAATTA TAATTA T-AATTA TAATTA TAATTA T

       1765 TTTTAATTTA


Statistics
Matches: 31,  Mismatches: 6, Indels: 2
        0.79            0.15        0.05

Matches are distributed among these distances:
   6   27  0.87
   7    4  0.13

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (6 bp):   
TAATTA

Found at i:1750 original size:25 final size:25

Alignment explanation


    Indices: 1717--1784  Score: 90
    Period size: 22  Copynumber: 2.9  Consensus size: 25

       1707 TTCTTGACTT

                                     
       1717 TTTTTAATTATAATTATAATAATTA
          1 TTTTTAATTATAATTATAATAATTA

                *                    
       1742 TTTTAAATTATAA-T-T-ATAATTA
          1 TTTTTAATTATAATTATAATAATTA

                            *     
       1764 TTTTTAATT-TAATTAAAATAA
          1 TTTTTAATTATAATTATAATAA

       1785 ATCTCATTGT


Statistics
Matches: 37,  Mismatches: 3, Indels: 7
        0.79            0.06        0.15

Matches are distributed among these distances:
  21    3  0.08
  22   16  0.43
  23    1  0.03
  24    5  0.14
  25   12  0.32

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (25 bp):   
TTTTTAATTATAATTATAATAATTA

Found at i:2612 original size:16 final size:17

Alignment explanation


    Indices: 2591--2628  Score: 51
    Period size: 16  Copynumber: 2.3  Consensus size: 17

       2581 TATGTAATCG

                   *    *    
       2591 TTTAAAATTAATTAT-T
          1 TTTAAAAATAATAATAT

                             
       2607 TTTAAAAATAATAATAT
          1 TTTAAAAATAATAATAT

                 
       2624 TTTAA
          1 TTTAA

       2629 TTAATAAATT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  16   13  0.68
  17    6  0.32

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (17 bp):   
TTTAAAAATAATAATAT

Found at i:7260 original size:59 final size:59

Alignment explanation


    Indices: 7168--7288  Score: 210
    Period size: 59  Copynumber: 2.1  Consensus size: 59

       7158 AAGAGATAAT

                                                                       
       7168 TGATCAAAGACCTAAAAAATCAACCTAAATCGGTAGATGATCTCGTAACTATA-CTTTC
          1 TGATCAAAGACCTAAAAAATCAACCTAAATCGGTAGATGATCTCGTAACTATACCTTTC

                                                                         
       7226 TGATCAAAGACGCT-AAAAATCAAACCTAAATCGGTAGATGATCTCGTAACTATACCTTTC
          1 TGATCAAAGAC-CTAAAAAATC-AACCTAAATCGGTAGATGATCTCGTAACTATACCTTTC

               
       7286 TGA
          1 TGA

       7289 GATAACATCT


Statistics
Matches: 60,  Mismatches: 0, Indels: 4
        0.94            0.00        0.06

Matches are distributed among these distances:
  58   18  0.30
  59   34  0.57
  60    8  0.13

ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27


Consensus pattern (59 bp):   
TGATCAAAGACCTAAAAAATCAACCTAAATCGGTAGATGATCTCGTAACTATACCTTTC

Found at i:22255 original size:48 final size:49

Alignment explanation


    Indices: 22181--22277  Score: 144
    Period size: 48  Copynumber: 2.0  Consensus size: 49

      22171 TTGAGAAAGA

                         *               *                    
      22181 AGGTAATTAAGACGGTGACACATATTCCTTGTGTTGTCCAACTGGCCAGG
          1 AGGTAATTAAGACAGTGACACATATTCCTAGTGTTGTCC-ACTGGCCAGG

                                 *                           
      22231 AGGT-ATT-AGACAGTGACACGTATTCCTAGTGTTGTCCACTGGCCAGG
          1 AGGTAATTAAGACAGTGACACATATTCCTAGTGTTGTCCACTGGCCAGG

      22278 TACATTCTTA


Statistics
Matches: 44,  Mismatches: 3, Indels: 3
        0.88            0.06        0.06

Matches are distributed among these distances:
  47   10  0.23
  48   27  0.61
  49    3  0.07
  50    4  0.09

ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28


Consensus pattern (49 bp):   
AGGTAATTAAGACAGTGACACATATTCCTAGTGTTGTCCACTGGCCAGG
Done.