Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168312.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23659
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Found at i:1404 original size:26 final size:26
Alignment explanation
Indices: 1375--1427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1365 CCGATCTGAT
1375 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
1401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
1427 C
1 C
1428 CTAAGTCACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:4273 original size:917 final size:868
Alignment explanation
Indices: 1795--4647 Score: 3483
Period size: 917 Copynumber: 3.2 Consensus size: 868
1785 ACGACTCGTT
* * * ** * *
1795 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGAGAAAAAAATATGGCACTAGCACATGCT
1 AGGTTCTCCGACGATGCTCAGACGATGGTGCCCCGGCAAAAAAAAATGCGGCACCAGCACATGCC
* ** * * * * * *
1860 CGAGCTGAGCATGTGTACCTGCAACCCTCGGTCCGATCCGATCTTAGGCTGGGAATGAACTCCGT
66 CAAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGT-TGATCTTAGACTGGGAATGAACTCCGT
* * * *
1925 GTGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTAAGCCGGCCAGAGGGGCAGGATACGCA
130 ATGCCTAAGTCAACCCACGAAATGAGCGTGC-GGCGCTCAGCCGGACAGAGGGGCAGGATGCGCA
* ** * * * *** * * *
1990 AG-CCAGGGATCGGCCGGGTCCCCCTCAACGTGCTGCCGATCTTGCTGCCGCAACCCTCGATC-C
194 AGTCGA-GGATCGATCGGGTCCCCCTCAGCATGCGGCCGATCAAACTACCACAACCCTCGATCGG
* * * * * * * * *
2053 AGTCTGATCTTAGACTGGGAATGAACTTCGTACGCCTAAGCCAACCGACAAAATGAGCGGGCGGG
258 A-TCCGATCTTAGACTAGGAATGAACTCCGTATGCCCAAACCAACCGAC-GAA--A-CGAGCGGA
* * * *
2118 CGGGCGGGCATTACACCGGGCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGT
318 CGGGCGGGCACTACACCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* ** *
2183 GGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGAAATTTTTATGGCTTGTAAATTCATAC
383 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTATAAATTCATAC
* * ** *
2248 AATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAAT
448 AATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACAAGTTTTCTATTTTTCACGAT
* *
2313 TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG-GCTTTTGGCCCCAAG
513 TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATGTTTTCAGAAGGAG-TTTTGGCCCCAAA
* ** * *
2377 CTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCGGCTAAAAACTCGAAG
577 CTTGGTAAACCTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
2441 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACA-GG
642 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTA-ATGG
* * *
2505 CAGCAAACCTGTAAAATCTCAAATACTCTCTAAGGGGGTGTGAGTTTTCAAAGTTTGATGAGGGA
706 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGA
** *
2570 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTGCATTATGTGCGCACACCCCCCCGG
771 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* * *
2635 CCACCCCCAATTGTCGAAACATCAATACCGTCGGTC
835 -CACCCCCAATTGTCGAACCCT-AATGCCGTCGGTC
** * * * * * * *
2671 AGGTTCTCTAACGATGCTCCGACGATGGCGGTCCGGGCGAAAAAAAATACGGCACAAGCACATGC
1 AGGTTCTCCGACGATGCTCAGACGATGG-TGCCCCGGCAAAAAAAAATGCGGCACCAGCACATGC
** * *
2736 TGAAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCG
65 CCAAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTT-GATCTTAGACTGGGAATGAACTCCG
* * *
2801 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGGCTCAGCCGGCCAGAGGGGCAGGATGCGGA
129 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGCGCTCAGCCGGACAGAGGGGCAGGATGCGCA
* * ** * * *
2866 AGTCGGGGATCGATCGGGTCCCCCTCGGCATGCGGTTGATCAAACTGCCGCAACCCTCGATCGGG
194 AGTCGAGGATCGATCGGGTCCCCCTCAGCATGCGGCCGATCAAACTACCACAACCCTCGATCGGA
* ** * *
2931 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCGAACCGACGAAACGAGCGGACGGGCG
259 TCCGATCTTAGACTAGGAATGAACTCCGTATGCCCAAACCAACCGACGAAACGAGCGGACGGGCG
*
2996 GGCACTACATCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
324 GGCACTACACCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
3061 AGGCGCATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
389 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGT
* * *
3126 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACAAGTTTTCTATTTTTCATGATTTTTGA
454 CCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACAAGTTTTCTATTTTTCACGATTTTTGA
* * *
3191 AACTTTTTACGGTTTGAGATTTTTTTAAAATGTTTTCAGAAGGATTTTTGGCCCCAAACTTTGTA
519 AACTTTTTACGGTTCGAGATTTTTTTAAAATGTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
3256 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTATCTAAAAACTCGAAGTGTACAG
584 AACCTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
3321 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACATCATGTGCGCACACCCCCCCAC
649 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG--ACA-C-T-T----------------
3386 CGCCCCAATCGTCGGAACCGAAATACCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
693 -----CAA---T-GG---C----TA--A-TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
3451 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGACAATATAAGGGCCAAATACCAGCAC
739 GGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
** * * *
3516 CCATCGCACATCATGTGCGCACACACCCCCGGCTTCCCCAATTGCCAGAACCCTAGTGCCATCGG
804 CCATCGCACATCATGTGCGCACAC-CCCCCGGCACCCCCAATTGTC-GAACCCTAATGCCGTCGG
3581 TC
867 TC
*
3583 AGGTTCTCCGACGATGCTCAGACGATGGTGCCCCAGGCAAAAAAAAATGTGGCACCAGCACATGC
1 AGGTTCTCCGACGATGCTCAGACGATGGTGCCCC-GGCAAAAAAAAATGCGGCACCAGCACATGC
3648 CCAAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCG
65 CCAAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGT-TGATCTTAGACTGGGAATGAACTCCG
* * * *
3713 TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGCCGCTCAGTCGGACAGAGGGGTAGGATGCGC
129 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGG-CGCTCAGCCGGACAGAGGGGCAGGATGCGC
* * *** * ** *
3778 AAGTCGAGGATCGGTCGGGTCCCCCTCAGCATGCTGCCGATCCTGCTACCATAACCCTCTTTCTG
193 AAGTCGAGGATCGATCGGGTCCCCCTCAGCATGCGGCCGATCAAACTACCACAACCCTCGATCGG
* * *
3843 ATCTGATCTTAGACTAGGAATGAACTCCGTATGCCCAAACCAACTGACGAAACGAGCGGGCGGGC
258 ATCCGATCTTAGACTAGGAATGAACTCCGTATGCCCAAACCAACCGACGAAACGAGCGGAC--G-
* *
3908 AGGCGGGCACTACACCGGTCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
320 -GGCGGGCACTACACCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
3973 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTATAAATTCATACA
384 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTATAAATTCATACA
*
4038 ATGGTCCTTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACAAGTTTTCTATTTTTCACGATT
449 ATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACAAGTTTTCTATTTTTCACGATT
* * *
4103 TTTGAAACTTTTTACGGTTCGAGATTTTTTTCAACTTTTTTCAGAAGGAGTTTTGGCCCCAAACT
514 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATGTTTTCAGAAGGAGTTTTGGCCCCAAACT
4168 TGGTAAACCTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACAT-GAAGT
579 TGGTAAACCTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGT
* * * *
4232 GTACAGGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATAGTA
643 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTAATGGCA
* *
4297 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAAGGCTA
708 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATA
* *
4362 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCGGCCC
773 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCAC
** * *
4427 CCTCCAATCATCGGAACACC-AATGCCGTAGATC
838 CC-CCAATTGTC-GAAC-CCTAATGCCGTCGGTC
* *** *
4460 AGGTTCTCCGACGATGCTCCAG-TGATGGTGCCCCGGGTGAAAAAAATGCAGCACCAGCACATGC
1 AGGTTCTCCGACGATGCT-CAGACGATGGTGCCCCGGCAAAAAAAAATGCGGCACCAGCACATGC
* * *
4524 CCGAGCCCAGTATGTGCACCCGCAACCCTCTG-TCTGGTTTGATCTTAGACTGGGAATGAACTCC
65 CCAAGCCCAGCATGTGCACCCGCAACCCTCGGTTC-GG-TTGATCTTAGACTGGGAATGAACTCC
* *
4588 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGG
128 GTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GGCGCTCAGCCGGACAGAGGGGCAGG
4648 TGGGCACTAA
Statistics
Matches: 1722, Mismatches: 193, Indels: 124
0.84 0.09 0.06
Matches are distributed among these distances:
872 282 0.16
873 67 0.04
875 7 0.00
876 287 0.17
877 282 0.16
878 7 0.00
880 2 0.00
884 1 0.00
887 2 0.00
888 1 0.00
891 2 0.00
899 2 0.00
902 1 0.00
903 2 0.00
906 1 0.00
910 2 0.00
911 5 0.00
912 165 0.10
913 254 0.15
914 1 0.00
915 4 0.00
917 344 0.20
918 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (868 bp):
AGGTTCTCCGACGATGCTCAGACGATGGTGCCCCGGCAAAAAAAAATGCGGCACCAGCACATGCC
CAAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTTGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAATGAGCGTGCGGCGCTCAGCCGGACAGAGGGGCAGGATGCGCAAG
TCGAGGATCGATCGGGTCCCCCTCAGCATGCGGCCGATCAAACTACCACAACCCTCGATCGGATC
CGATCTTAGACTAGGAATGAACTCCGTATGCCCAAACCAACCGACGAAACGAGCGGACGGGCGGG
CACTACACCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCC
CTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACAAGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGAGATTTTTTTAAAATGTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAA
CCTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTAATGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCACCCCCAATT
GTCGAACCCTAATGCCGTCGGTC
Found at i:6068 original size:26 final size:26
Alignment explanation
Indices: 6039--6091 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6029 TCGATCCGAT
** *
6039 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCATATG
6065 CTTAGACTAAGAATGAACTCCATATG
1 CTTAGACTAAGAATGAACTCCATATG
6091 C
1 C
6092 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCATATG
Found at i:8110 original size:375 final size:374
Alignment explanation
Indices: 7417--8148 Score: 1082
Period size: 375 Copynumber: 2.0 Consensus size: 374
7407 CTTTGTGGAT
* *
7417 GTGATCCTTGTATTTTTGTGAGCATGCACAAAAAAATTCAGCTAAAAAGTAGAAATGTATAGGAT
1 GTGATCCTTGTATTTTTGTGAGCATGCACAAAAAAATTCAGCTAAAAACTAGAAATGTACAGGAT
* * * *
7482 TTTGTGACCGTTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
66 TGTGTGACCATCTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTAGCAGCAAACCTG
* * * *
7547 TAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAA
131 TAAAATCTCAAATGCACTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAA
* *
7612 TATAAGGGCCAACTACCAGTACCCATCGCACATCATGTGCGCACACACCCCCACCCCCCCAATCG
196 TATAAGGGCCAACTACCAATACCCATCACACATCATGTGCGCACACACCCCCACCCCCCCAATCG
*
7677 TCAGAACCCCAACGTCGCCGGTCAGGTTCTCCAACGATGGTGGCCCAGGTGAAAAAAAAATGCTG
261 TCAGAACCCCAACGCCGCCGGTCAGGTTCTCCAACGATGGTGGCCCAGGTGAAAAAAAAATG-TG
7742 -CACCAGCACATGCTCGAGCCTAGCATGTGCACCAGCAACCCTCGGTGTAC
325 CCA-CAGCACATGCTCGAGCCTAGCATGTGCACCAGCAACCCTCGGTGTAC
* * *
7792 GTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCTGCTAAAAACTCA-AAGTGTACAGGA
1 GTGATCCTTGTATTTTTGTGAGCATGCACAAAAAAATTCAGCTAAAAACT-AGAAATGTACAGGA
* **
7856 TTGTGTGACCATCTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTTCTACTAGCAGCAAACCT
65 TTGTGTGACCATCTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTAGCAGCAAACCT
* *
7921 GTAAAATCTGAAATGCTCTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCA
130 GTAAAATCTCAAATGCACTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCA
* * * *
7986 ATATAAGGGCCAAGTACCAATTCCCATCACTCATCATGTGCGCACAC-CCGCCCTGCCCCCCCAA
195 ATATAAGGGCCAACTACCAATACCCATCACACATCATGTGCGCACACACC-CCC-ACCCCCCCAA
* * *
8050 TC-TCCTGAACCCCAATGCCGTCGGTCAGGTTCTCCGAA-GATGGTGG-CCAGG-GAGAAAAAAA
258 TCGT-CAGAACCCCAACGCCGCCGGTCAGGTTCTCC-AACGATGGTGGCCCAGGTGA-AAAAAAA
*
8111 TTGTGCCACAGCACATGCTCGAGCCTAGCATGTGCACC
320 ATGTGCCACAGCACATGCTCGAGCCTAGCATGTGCACC
8149 CGTAACCTTC
Statistics
Matches: 321, Mismatches: 29, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
374 36 0.11
375 236 0.74
376 47 0.15
377 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (374 bp):
GTGATCCTTGTATTTTTGTGAGCATGCACAAAAAAATTCAGCTAAAAACTAGAAATGTACAGGAT
TGTGTGACCATCTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTAGCAGCAAACCTG
TAAAATCTCAAATGCACTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAA
TATAAGGGCCAACTACCAATACCCATCACACATCATGTGCGCACACACCCCCACCCCCCCAATCG
TCAGAACCCCAACGCCGCCGGTCAGGTTCTCCAACGATGGTGGCCCAGGTGAAAAAAAAATGTGC
CACAGCACATGCTCGAGCCTAGCATGTGCACCAGCAACCCTCGGTGTAC
Found at i:8201 original size:26 final size:26
Alignment explanation
Indices: 8172--8224 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8162 CCGATCTGAT
*
8172 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
8198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
8224 C
1 C
8225 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:9106 original size:26 final size:26
Alignment explanation
Indices: 9070--9121 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
9060 CGGTCTAATT
9070 TTAGACTGGGAACGAACTCCGTATGC
1 TTAGACTGGGAACGAACTCCGTATGC
* *
9096 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAACGAACTCCGTATGC
9122 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAACGAACTCCGTATGC
Found at i:9960 original size:26 final size:26
Alignment explanation
Indices: 9924--9976 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9914 CTAGTCTGAT
*
9924 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
9950 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9976 C
1 C
9977 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10421 original size:5 final size:5
Alignment explanation
Indices: 10405--10504 Score: 84
Period size: 5 Copynumber: 19.8 Consensus size: 5
10395 TTAGTATCCT
* *
10405 TTTTA CTTTTA TTTTA TTTT- TTATTT TTTTA TTTTTG TTTTAA TTTT-
1 TTTTA -TTTTA TTTTA TTTTA TT-TTA TTTTA -TTTTA TTTT-A TTTTA
*
10452 TTTTA TTTTA TTTT- TTTTA TTTTCA CTTTTA TTTTG TTTTA --TTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTT-A -TTTTA TTTTA TTTTA TTTTA TTTTA
10501 TTTT
1 TTTT
10505 CTTTAAATAA
Statistics
Matches: 79, Mismatches: 5, Indels: 21
0.75 0.05 0.20
Matches are distributed among these distances:
3 3 0.04
4 10 0.13
5 45 0.57
6 17 0.22
7 4 0.05
ACGTcount: A:0.15, C:0.03, G:0.02, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:10436 original size:15 final size:14
Alignment explanation
Indices: 10411--10504 Score: 88
Period size: 14 Copynumber: 6.6 Consensus size: 14
10401 TCCTTTTTAC
10411 TTTTATTTTA--TT
1 TTTTATTTTATTTT
10423 TTTTATTTT-TTTAT
1 TTTTATTTTATTT-T
*
10437 TTTTGTTTTAATTTT
1 TTTTATTTT-ATTTT
10452 TTTTATTTTATTTT
1 TTTTATTTTATTTT
10466 TTTTATTTTCACTTTT
1 TTTTATTTT-A-TTTT
* *
10482 ATTTTGTTTTA-TTA
1 -TTTTATTTTATTTT
10496 TTTTATTTT
1 TTTTATTTT
10505 CTTTAAATAA
Statistics
Matches: 69, Mismatches: 5, Indels: 15
0.78 0.06 0.17
Matches are distributed among these distances:
12 9 0.13
13 9 0.13
14 25 0.36
15 10 0.14
16 8 0.12
17 8 0.12
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (14 bp):
TTTTATTTTATTTT
Found at i:10440 original size:26 final size:26
Alignment explanation
Indices: 10411--10504 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 26
10401 TCCTTTTTAC
10411 TTTTATTTT-ATTTTTTATTTTTTTAT
1 TTTTATTTTAATTTTTTATTTTTTT-T
*
10437 TTTTGTTTTAATTTTTTTTATTTTATTTT
1 TTTTATTTTAA--TTTTTTATTTT-TTTT
* * *
10466 TTTTATTTTCA-CTTTTATTTTGTTT
1 TTTTATTTTAATTTTTTATTTTTTTT
*
10491 TATTATTTT-ATTTT
1 TTTTATTTTAATTTT
10505 CTTTAAATAA
Statistics
Matches: 56, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
24 1 0.02
25 13 0.23
26 17 0.30
27 1 0.02
29 21 0.38
30 3 0.05
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (26 bp):
TTTTATTTTAATTTTTTATTTTTTTT
Found at i:10482 original size:36 final size:35
Alignment explanation
Indices: 10405--10509 Score: 102
Period size: 39 Copynumber: 2.8 Consensus size: 35
10395 TTAGTATCCT
* * **
10405 TTTTACTTTTATTTTATTTTTTATTTTTTTATTTTTG
1 TTTTAATTTT-TTTTATTTTAT-TTTTTTTATTTTAC
10442 TTTTAATTTTTTTTATTTTATTTTTTTTATTTTCAC
1 TTTTAATTTTTTTTATTTTATTTTTTTTATTTT-AC
* *
10478 TTTTATTTTGTTTTATTATTTTATTTTCTTTA
1 TTTTA-ATT-TTTT-TTATTTTATTTTTTTTA
10510 AATAAAAATC
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
35 12 0.21
36 15 0.26
37 11 0.19
38 4 0.07
39 16 0.28
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (35 bp):
TTTTAATTTTTTTTATTTTATTTTTTTTATTTTAC
Found at i:10502 original size:30 final size:30
Alignment explanation
Indices: 10421--10505 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
10411 TTTTATTTTA
* *
10421 TTTTTTATTTT-TTTATTTT-TGTTTTAATT
1 TTTTTTATTTTATTTATTTTAT-TTTCACTT
*
10450 TTTTTTATTTTATTTTTTTTATTTTCACTT
1 TTTTTTATTTTATTTATTTTATTTTCACTT
*
10480 TTATTTTGTTTTA-TTATTTTATTTTC
1 TT-TTTTATTTTATTTATTTTATTTTC
10506 TTTAAATAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
29 11 0.23
30 27 0.56
31 10 0.21
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (30 bp):
TTTTTTATTTTATTTATTTTATTTTCACTT
Found at i:10581 original size:59 final size:59
Alignment explanation
Indices: 10509--10978 Score: 560
Period size: 58 Copynumber: 7.9 Consensus size: 59
10499 TATTTTCTTT
* *
10509 AAATAAAA-ATCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* *** * *
10567 AAATAAAATTTCAAAACAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGA
1 AAATAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* * * *
10626 AAATCAAAGTTTCCAAAAAAATATTTTTGGGGAAAGGTTGAAAGTATCAATTTTCCTTAA
1 AAAT-AAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* *
10686 AAATAAAATTTCAAAAAAAA-GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 AAATAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* * *
10744 AAATCAAAGTTTC--CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 AAAT-AAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* *
10802 AAATCAAAATTTCCAAAAAAAAAAATATTTTTGGGGAAAAGATGAAAGTATCAATTTTCCTTAA
1 AAAT-AAAATTT-C---AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* * *
10866 AAATAAATTTTCAAAAAATCA-ATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT-A
1 AAATAAAATTTCAAAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAA
* * * *
10925 AATTAAAGTTTC-AAAACAATATTTTT-AGGGAAAAGTTAAAAGTATCAATTTTCC
1 AAATAAAATTTCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
10979 CCGCGCAAGA
Statistics
Matches: 355, Mismatches: 43, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
57 7 0.02
58 128 0.36
59 117 0.33
60 51 0.14
62 1 0.00
63 6 0.02
64 45 0.13
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (59 bp):
AAATAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:21362 original size:20 final size:20
Alignment explanation
Indices: 21337--21421 Score: 72
Period size: 18 Copynumber: 4.2 Consensus size: 20
21327 ACTATGCTTG
*
21337 AAAAAAT-AAAAAAGGTGAAA
1 AAAAAATGAAAAAA-ATGAAA
21357 AAAAAATGAAAAAAATG--A
1 AAAAAATGAAAAAAATGAAA
*
21375 AAAAAATGAAAAATGATGAAAA
1 AAAAAATGAAAAA-AATG-AAA
21397 ATGAAAAATG-AAAAAA-GAAA
1 A--AAAAATGAAAAAAATGAAA
21417 AAAAA
1 AAAAA
21422 GAAGTGAATG
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
18 18 0.33
19 3 0.05
20 13 0.24
21 7 0.13
22 3 0.05
23 4 0.07
24 7 0.13
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (20 bp):
AAAAAATGAAAAAAATGAAA
Found at i:21368 original size:7 final size:7
Alignment explanation
Indices: 21367--21418 Score: 50
Period size: 7 Copynumber: 6.7 Consensus size: 7
21357 AAAAAATGAA
21367 AAAAATG
1 AAAAATG
21374 AAAAAAATG
1 -A-AAAATG
21383 AAAAATGATG
1 -AAAA--ATG
21393 AAAAATG
1 AAAAATG
21400 AAAAATG
1 AAAAATG
*
21407 AAAAAAG
1 AAAAATG
21414 AAAAA
1 AAAAA
21419 AAAGAAGTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
7 21 0.52
8 4 0.10
9 12 0.30
10 3 0.08
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:21368 original size:10 final size:10
Alignment explanation
Indices: 21337--21397 Score: 56
Period size: 9 Copynumber: 6.3 Consensus size: 10
21327 ACTATGCTTG
21337 AAAAAAT-AA
1 AAAAAATGAA
**
21346 AAAAGGTGAAA
1 AAAAAATG-AA
21357 AAAAAATG-A
1 AAAAAATGAA
21366 AAAAAATG-A
1 AAAAAATGAA
21375 AAAAAATGAA
1 AAAAAATGAA
**
21385 AAATGATGAA
1 AAAAAATGAA
21395 AAA
1 AAA
21398 TGAAAAATGA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
9 23 0.53
10 12 0.28
11 8 0.19
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.11
Consensus pattern (10 bp):
AAAAAATGAA
Found at i:21377 original size:17 final size:16
Alignment explanation
Indices: 21356--21412 Score: 78
Period size: 17 Copynumber: 3.4 Consensus size: 16
21346 AAAAGGTGAA
21356 AAAAAAATGAAAAAAATG
1 AAAAAAATG--AAAAATG
21374 AAAAAAATGAAAAATG
1 AAAAAAATGAAAAATG
*
21390 ATGAAAAATGAAAAATG
1 A-AAAAAATGAAAAATG
21407 AAAAAA
1 AAAAAA
21413 GAAAAAAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
16 12 0.33
17 15 0.42
18 9 0.25
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (16 bp):
AAAAAAATGAAAAATG
Found at i:21398 original size:10 final size:9
Alignment explanation
Indices: 21356--21420 Score: 70
Period size: 9 Copynumber: 7.8 Consensus size: 9
21346 AAAAGGTGAA
21356 AAAAAAATG
1 AAAAAAATG
21365 AAAAAAATG
1 AAAAAAATG
21374 AAAAAAATG
1 AAAAAAATG
21383 --AAAAATG
1 AAAAAAATG
*
21390 ATGAAAAATG
1 A-AAAAAATG
21400 --AAAAATG
1 AAAAAAATG
21407 -AAAAAA-G
1 AAAAAAATG
21414 AAAAAAA
1 AAAAAAA
21421 AGAAGTGAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
7 15 0.29
8 11 0.22
9 18 0.35
10 7 0.14
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.11
Consensus pattern (9 bp):
AAAAAAATG
Found at i:21420 original size:17 final size:17
Alignment explanation
Indices: 21355--21424 Score: 56
Period size: 17 Copynumber: 4.1 Consensus size: 17
21345 AAAAAGGTGA
21355 AAAAAAAATGAAAAAA-
1 AAAAAAAATGAAAAAAG
*
21371 ATGAAAAAAATGAAAAATG
1 A--AAAAAAATGAAAAAAG
** *
21390 ATGAAAAATGAAAAATG
1 AAAAAAAATGAAAAAAG
21407 AAAAAAGAA--AAAAAAG
1 AAAAAA-AATGAAAAAAG
21423 AA
1 AA
21425 GTGAATGAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
16 9 0.20
17 18 0.41
18 16 0.36
19 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (17 bp):
AAAAAAAATGAAAAAAG
Found at i:22506 original size:42 final size:41
Alignment explanation
Indices: 22456--22607 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 41
22446 TACTTTCCCA
22456 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCC
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCC
*
22497 AAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTT-C
1 -AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCC
*
22538 --AGTCATGGTGCCTCTGTTTAGA-GAGCAATTTATGTTTCTC
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTTC-C
* * * *
22578 AATGTCGTTGAGCCTCTATTTTAGAGGAGC
1 AAAGTCGTGGTGCCTCT-GTTTAGAGGAGC
22608 TTTGGTAAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
37 10 0.11
38 24 0.25
40 1 0.01
41 1 0.01
42 49 0.52
43 6 0.06
44 4 0.04
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.36
Consensus pattern (41 bp):
AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCC
Found at i:22585 original size:80 final size:81
Alignment explanation
Indices: 22458--22607 Score: 216
Period size: 80 Copynumber: 1.9 Consensus size: 81
22448 CTTTCCCAAA
* *
22458 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAAGTCGTGGTGCCTCT-GTTTAGA
1 AGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAAGTCGTGGAGCCTCTAGTTTAGA
22522 GGAGCAATTTACTTTC
66 GGAGCAATTTACTTTC
* * *
22538 AGTCATGGTGCCTCTGTTTAGA-GAGCAATTTATGTTTCTC-AATGTCGTTGAGCCTCTATTTTA
1 AGTCATGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTTC-CAAAAGTCGTGGAGCCTCTAGTTTA
22601 GAGGAGC
64 GAGGAGC
22608 TTTGGTAAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
79 11 0.18
80 39 0.63
81 12 0.19
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (81 bp):
AGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAAGTCGTGGAGCCTCTAGTTTAGA
GGAGCAATTTACTTTC
Found at i:22635 original size:9 final size:8
Alignment explanation
Indices: 22614--22660 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 8
22604 GAGCTTTGGT
22614 AAAA-AAA
1 AAAACAAA
22621 AAAACAAA
1 AAAACAAA
22629 TAAAACAAAA
1 -AAAAC-AAA
22639 AAAAGCACAA
1 AAAA-CA-AA
22649 AAAACAAA
1 AAAACAAA
22657 AAAA
1 AAAA
22661 TGAAAATGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
7 4 0.11
8 9 0.26
9 12 0.34
10 10 0.29
ACGTcount: A:0.85, C:0.11, G:0.02, T:0.02
Consensus pattern (8 bp):
AAAACAAA
Found at i:22640 original size:19 final size:19
Alignment explanation
Indices: 22616--22660 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
22606 GCTTTGGTAA
22616 AAAAAAAAACA-AATAAAAC
1 AAAAAAAAACACAA-AAAAC
*
22635 AAAAAAAAGCACAAAAAAC
1 AAAAAAAAACACAAAAAAC
22654 AAAAAAA
1 AAAAAAA
22661 TGAAAATGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 22 0.92
20 2 0.08
ACGTcount: A:0.84, C:0.11, G:0.02, T:0.02
Consensus pattern (19 bp):
AAAAAAAAACACAAAAAAC
Found at i:22848 original size:15 final size:16
Alignment explanation
Indices: 22813--22850 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
22803 AATTCGATTC
22813 TTATTTTGTATTATTT
1 TTATTTTGTATTATTT
22829 TTATTTT-TATT-TTT
1 TTATTTTGTATTATTT
22843 TGTATTTT
1 T-TATTTT
22851 AGGCATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.19
15 10 0.48
16 7 0.33
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (16 bp):
TTATTTTGTATTATTT
Found at i:23000 original size:26 final size:27
Alignment explanation
Indices: 22895--23000 Score: 81
Period size: 26 Copynumber: 3.8 Consensus size: 27
22885 TTAATATATG
* * * *
22895 TATATCTTTATTTATTTTTTTGTTTTGT
1 TATATATTTA-TTATTTTTTTATATAGT
22923 TA-ATATTTATATGTATTTTATTTATATAGT
1 TATATA-TT-TAT-TATTTT-TTTATATAGT
* * *
22953 TATATATTTATTATTATATTATA-ATT
1 TATATATTTATTATTTTTTTATATAGT
*
22979 TATTTATTTATTATTTTTTTAT
1 TATATATTTATTATTTTTTTAT
23001 CTTGTAATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
26 21 0.33
27 7 0.11
28 10 0.16
29 11 0.17
30 11 0.17
31 3 0.05
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.68
Consensus pattern (27 bp):
TATATATTTATTATTTTTTTATATAGT
Found at i:23000 original size:37 final size:37
Alignment explanation
Indices: 22861--23000 Score: 106
Period size: 38 Copynumber: 3.6 Consensus size: 37
22851 AGGCATTTTA
* *
22861 TTATTTATTTATTATTACTATGTATTAATATATGTATATCT
1 TTATTTATTTATTATT--TATTTATTATTATATGTATA--T
* * *
22902 TTATTTATTT-TTTTGTTTTGTTAATATTTATATGTAT-T
1 TTATTTATTTATTAT-TTAT-TTATTA-TTATATGTATAT
* *
22940 TTATTTATATAGTTATATATTTATTATTATAT-TATAAT
1 TTATTTATTTA-TTATTTATTTATTATTATATGTAT-AT
*
22978 TTATTTATTTATTATTTTTTTAT
1 TTATTTATTTATTATTTATTTAT
23001 CTTGTAATAA
Statistics
Matches: 79, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
36 3 0.04
37 16 0.20
38 26 0.33
39 4 0.05
40 10 0.13
41 20 0.25
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (37 bp):
TTATTTATTTATTATTTATTTATTATTATATGTATAT
Found at i:23053 original size:20 final size:20
Alignment explanation
Indices: 22986--23057 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 20
22976 ATTTATTTAT
22986 TTATTATTTTT--TTATCTTG
1 TTATTATTTTTGATTATC-TG
* *
23005 TAATAATTTTTGGATTTATCT-
1 TTATTATTTTT-GA-TTATCTG
*
23026 TATTTTATTTTTGATTATCTG
1 T-TATTATTTTTGATTATCTG
23047 TTATTATTTTT
1 TTATTATTTTT
23058 TTTTCTTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
19 9 0.22
20 15 0.37
21 4 0.10
22 8 0.20
23 5 0.12
ACGTcount: A:0.21, C:0.04, G:0.07, T:0.68
Consensus pattern (20 bp):
TTATTATTTTTGATTATCTG
Found at i:23075 original size:31 final size:34
Alignment explanation
Indices: 23033--23104 Score: 114
Period size: 31 Copynumber: 2.2 Consensus size: 34
23023 TCTTATTTTA
23033 TTTTTGATTATCTG-TTATTATT-TTTTTTTC-T
1 TTTTTGATTATCTGATTATTATTATTTTTTTCAT
*
23064 TTTTTGTTTATCTGATTATTATTATTTTTTTCAT
1 TTTTTGATTATCTGATTATTATTATTTTTTTCAT
23098 TTTTTGA
1 TTTTTGA
23105 GGCTGTGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
31 13 0.36
32 8 0.22
33 8 0.22
34 7 0.19
ACGTcount: A:0.15, C:0.06, G:0.07, T:0.72
Consensus pattern (34 bp):
TTTTTGATTATCTGATTATTATTATTTTTTTCAT
Done.