Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168314.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23625
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Found at i:793 original size:26 final size:26
Alignment explanation
Indices: 764--816 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
754 CCGGTTCGAT
764 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
816 C
1 C
817 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:3577 original size:26 final size:26
Alignment explanation
Indices: 3541--3593 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3531 CTGGTCTAAT
*
3541 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3567 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3593 C
1 C
3594 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4436 original size:26 final size:26
Alignment explanation
Indices: 4400--4452 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4390 CCAGTTTGAT
*
4400 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4426 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4452 C
1 C
4453 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4741 original size:859 final size:840
Alignment explanation
Indices: 3077--7839 Score: 5000
Period size: 859 Copynumber: 5.5 Consensus size: 840
3067 CATTTTTTAT
* *
3077 TTTTCACGATTTTTGAAACATTTTACGGTTCGGGATTTTTTGT-AAATTTTTTCAGAAGGAGTTT
1 TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT-TAAAATTTTTTCAGAAGGAGTTT
*
3141 TGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
65 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
3206 AAACTCGAAGTGTACAGGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
130 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
** * *
3271 GGCTACTCACAGCAAACCTGTCAAATCTCAAATGCTATTTAA-GGGGTGTGAGTTCTCGAGGTTT
195 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
3335 GATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACA
260 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
3400 CCTCCCCCACCCCCCCAATTGTCGGAACCGCAATGCCGTAGGTCAGGTTCTCCGGCGATGGTGCT
325 -C-CCCCCA-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCC
*
3465 CCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCATCATGTGCACCCGCAACCCTCGA
387 CCGGGCGAAAAAAAA-GCGGCACCAGCACATG-CCGAGCCCAGCATGTGCA-CCGCAA-CC-C--
*
3530 TCTGGTCTAATCTTAGACTGGGGATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
445 TC-GG----ATCTT---CT---G--G-A-TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCC
* * *
3595 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGGCAGAGGGGTAGGATGCGCAAGCCG
493 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * * * * * *
3660 AGGATCGATCGGGCCCCCCTCAGCATGCTACCGATCTTGCTGCCGCAATCCTCAGTCCGGTCCAA
558 -GGATCGATCGAGTCCCCCTCAGCGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCCGATCCAA
* * * * *
3725 TCTTAGAATGGGAATGAACTCCGTATGCCTAAGACAACCGACGAAACAAACGGGCGGGCGGGCGG
622 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGG
* *
3790 GCACTACGCCGGCCA-AGGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTT
687 GCACTACGCCGACCAGA-GAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
3854 AGGCACATCTTCATATTTTTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
751 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
3919 CCCGTAAGCCTTCAT-G-TGA-A-G
816 CCCTTAAGCCTTCATAGTTGAGACG
* *
3940 -TTTCACGATTTTTGAAACTTTTTACAGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
1 TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
* * *
4004 AGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAACAATTCAGCTAAA
66 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
4069 AAC-CTTATGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
131 AACTC-GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
4133 GGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGGTTT
195 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
4198 GATGAGGGATA-GGGGCCATTATGAGGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACA
260 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
*
4262 CCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGGTGCCCCG
325 CCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCG
* *
4327 GGCGAAAAAAAAGACGACACCAGTACATGCTCGAGCCCAGCATGTGCACCTGCAACCCTCGATCC
390 GGCGAAAAAAAAG-CGGCACCAGCACATGC-CGAGCCCAGCATGTGCACC-GCAA-CC-C--T-C
4392 AGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
447 -G---GATCTT---CT-GG-AT---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
4457 GTCAACCCACGAAACAAGCGTGCAGGCGCTCCGTCGGCCAAAGGGGCAGGATGCGCAAGCCAGGG
496 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC-GGG
* * * * * *
4522 TTCGATCCAGACCCCCTCAGCGTGCTACTGTTCCTGCTGTCGCAACCCTCGGTCCAATCCAATCT
560 ATCGATCGAGTCCCCCTCAGCGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCCGATCCAATCT
* * *
4587 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGATCAGGCGGACGGGCGGGCA
625 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCA
** * *
4652 CTATACCGACCAGAGAGACGGGATGCGCTAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
690 CTACGCCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
4717 TCATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
755 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
4782 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
820 TAAGCCTTCA--T--AG--T--T-----GA-GA--CG
*
4819 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTGGAGATTTTTTTAAAATTTTTTCA-AA
1 TTTTC-A-----C--GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
*
4883 GGAGTTTTGGCCCC-AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATT
58 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
4947 GAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAAAC
123 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGAC
* *
5012 ACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCT
187 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
5077 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATG
252 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
5142 TGTGCACACCCCCTCAGCCCCCCCAATCG-CTAGAACCCCAATGTCGTCGGTCAGGTTCTCCGGT
317 TGCGCACACCCCC-CA--CCCCCCAATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCC---
* * *
5206 GATGCTCCGGTGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAACACATGCCTGAG-CCAACA
375 G--G---C---GATGGTGCCCCGGGCGAAAAAAAA-GCGGCACCAGCACATGCC-GAGCCCAGCA
5270 TGTGCAACCGCAACCCTCGG----TCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
430 TGTGC-ACCGCAACCCTCGGATCTTCTGGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
5330 AAGTCAACCCATGAAATGAGCGTGCAGGCACTCAGCCAGCCAGAGGGGCATGATGCGTAAGCCGA
494 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG-
* * * * * ** **
5395 GGATCG-GCTGGGTCCCCCTCAGCGTGCTGCTGATCCTGCTGCCGCAATCCTCGATTTGATCTGA
558 GGATCGATC-GAGTCCCCCTCAGCGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCCGATCCAA
* * * *
5459 TCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAATCGACGAAACGAGC-GGAGGACGGGCGG
622 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGG
* * * *
5523 GCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGTCGTGGATTGATAGGGTGGTAGGTGGGTTTA
687 GCACTACGCCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* ** * *
5588 GGCACATCTTCATGTTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATTATTGCC
752 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
5653 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAGGACTCG
817 CCTTAAGCCTTCA--T--AG--T--T-----GA-GA--CG
* * * *
5693 TTTTCTATTTCTCACGATTTTTTAAACTTTTTACGATTCGTGATTTTTTT-AAATTTTTTTAGAA
1 -------TTT-TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
* *
5757 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATT
58 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
5822 CAGCTGAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
123 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
5887 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGCA-TTCT
188 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-AGTTCT
* * * **
5951 CGAGGTTTGATGAGGTATATGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATG
252 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * ** * * * *
6016 TGCGCAAAACCCCCGACCCCCTCAATCGCCGGAACCCTAATGCCACCGATCAAGTTCTCTGACGA
317 TGCGC-ACACCCCCCACCCCC-CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* * *
6081 TGGTGCCCCGGGTGAAAAAAAATACGGCACCAGCACGTGCCCGAGCCCAGCATGTGCACCGACAA
380 TGGTGCCCCGGGCGAAAAAAAA-GCGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCG-CAA
* * * *
6146 CCCTCGG---TTC-GG-TCCGATCTTATACTAGGAATGAACTCCATATGCCAAAGTCAACCCACG
442 CCCTCGGATCTTCTGGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * * *
6206 AAATGAGCGTGTGGGTGCTAAGCCGGCTAAAGGGGTAGGATGCACAAGCCGGGGATCGATC-AGG
507 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC-GGGATCGATCGA-G
* * * * * * * * * * *
6270 TCCCCCTCTGCATGCT-GTCGATCCCGCTACCACAACCCTTGGTCTGGTCCTATCTTAGACTAGG
570 TCCCCCTCAGCGTGCTACT-GATCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGG
* * * * * *
6334 AATGAACTCCGTATGCCTAAGCCAATCAATGAAATGAGCGGGCGGGCGGGAGGGCACTACGCC-A
634 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGA
* * *
6398 GCCAGAGAGACGGGATGCACAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
699 -CCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
6463 ATATTTCTGCTATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
763 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
6528 CTTGTGAAGTTTCATGGCAAGACGACTCG
828 C--AT--AG--T--T-----GA-GA--CG
* * *
6557 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAAAATTTTTTTAGAA
1 --------TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
* *
6622 GGAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATT
58 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
6686 CAGCTAAAAACT-GAAACTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTTAGAC
123 CAGCTAAAAACTCG-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
6750 ACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
187 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
6815 CGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTG
252 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
6880 TGCGCACACCCCTCC-CGCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCAGACGA
317 TGCGCACACCCC-CCAC-CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC---C--
* * * *
6944 TGCTCCAGCGATGGTGCCCCTGGCGAAAAAAATGCAGCACCAGCAAATGGCCGAGCCCAGCATGT
375 -G-----GCGATGGTGCCCCGGGCGAAAAAAAAGCGGCACCAGCACAT-GCCGAGCCCAGCATGT
* *
7009 GCACCCGCAACCCTC-GATC--C-GG-TCTGATCTTAGACTGGGAATGAACTCGGTATGCCTAAG
433 GCA-CCGCAACCCTCGGATCTTCTGGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
7069 TCAA-CCATGACACGAGCGTACGGGCGGCTCCAG-CGACCAGAGGGGCAGGATGGCGCAAGCCGG
497 TCAACCCACGAAACGAGCGTGCGGGC-GCT-CAGCCGGCCAGAGGGGCAGGAT-GCGCAAGCC-G
* * * * *
7132 GTGATCGGCTTGAGGT-CCCCTCTA-CGTGCTGCTCGATGCCTACTGCTGGCAACCTCTCGGGTC
558 G-GATC-GATCGA-GTCCCCCTC-AGCGTGCTACT-GAT-CCTGCTGC-CGCAACC-CTC-GGTC
* * *
7195 CGCATCCGATACTTAGACTGGGAATGAACTCCGTATGCCTAAACGCAACTGAC-AAAC-ATG-A-
614 CG-ATCCAAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CAACCGACGAAACGA-GCAG
* ** * * *
7256 GCGGGC-GGC-GACACTACGTAGTGCCAGAGAGGACGGGATCGGTGCAAGCCGTGGATCGATAGG
675 GCGGGCGGGCGGGCACTACGCCG-ACCAGAGA-GACGGGAT--GCGCAAGTCGTGGATCGATAGG
* *
7319 GTGGTAGGTGGGTTCACAGCACATCTTCATATTTCTGCCAGTGCCAATGCCATTTTTATGGCTTT
736 GTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTGCCA-TGCCAATGCCATTTTTATGGC-TT
7384 GTAAGATTCATTACATATGGTCCCTTAAGCCTCTCATGTGAAGTTTCATGGCAAAGTACG
798 GTAA-ATTCA-TACA-ATGGTCCCTTAAGCCT-TCA--T--AG--T--T-G---AG-ACG
* * *
7444 ACTCCATTTCTATTTTTTCACGATTGTTTGAAACTTTTTACAGTTCCAAATTTTTTTAAAATTTT
1 --------------TTTTCACGATT-TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
*
7509 TTCAGAAGGAGTTTTGGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
51 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
7574 AAAACTTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCCTCATT
116 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
7638 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
181 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
7703 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAAC
246 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * * *
7768 ATCATGTGTGCACACCCCCTGCTCCCCCAATCGCCGGAACCCCAATGTCGTCGTTCAGGTTCTCC
311 ATCATGTGCGCACACCCCCCAC-CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
7833 GGCGATG
375 GGCGATG
7840 CTCCGACGAT
Statistics
Matches: 3371, Mismatches: 366, Indels: 306
0.83 0.09 0.08
Matches are distributed among these distances:
854 1 0.00
855 3 0.00
857 3 0.00
858 4 0.00
859 445 0.13
860 10 0.00
861 4 0.00
862 306 0.09
863 266 0.08
864 406 0.12
865 64 0.02
869 2 0.00
870 1 0.00
872 21 0.01
873 131 0.04
874 388 0.12
875 287 0.09
876 17 0.01
877 11 0.00
878 5 0.00
879 15 0.00
880 15 0.00
881 24 0.01
882 10 0.00
883 76 0.02
884 25 0.01
885 22 0.01
886 106 0.03
887 109 0.03
888 105 0.03
889 20 0.01
890 14 0.00
891 40 0.01
892 1 0.00
893 16 0.00
894 276 0.08
895 57 0.02
896 3 0.00
897 1 0.00
899 1 0.00
900 2 0.00
901 15 0.00
902 42 0.01
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (840 bp):
TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGG
GCGAAAAAAAAGCGGCACCAGCACATGCCGAGCCCAGCATGTGCACCGCAACCCTCGGATCTTCT
GGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGATCGATCGAGTCCCCCTCAGCGTGCT
ACTGATCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGC
GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATAGTTGAGACG
Found at i:5669 original size:874 final size:877
Alignment explanation
Indices: 3940--7990 Score: 4851
Period size: 864 Copynumber: 4.6 Consensus size: 877
3930 TCATGTGAAG
* * *
3940 TTTCACGATTTTTGAAACTTTTTACAGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTA
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* *
4005 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAACAATTCAGCTAAAA
66 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
4070 AC-CTTATGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
131 ACTC-GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
4134 GCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGGTTTG
195 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
4199 ATGAGGGATA-GGGGCCATTATGAGGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACAC
260 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* *
4263 CCCC-C-ACCCCCCAATCG-TCGGAACCCCAAT---GCC-GTC-GG---TCAGGT--T-CTCCGG
325 CCCCTCGCCCCCCCAATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGG
* *
4314 TGATGGTGCCCCGGGCGAAAAAAAA-GACGACACCAGTACATG-CTCGAGCCCAGCATGTGCACC
389 TGATGGTGCCCCGGGCGAAAAAAAATG-CGGCACCAGCACATGCCT-GAGCCCAGCATGTGCACC
4377 TGCAACCCTCGATCCAGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGA
452 -GCAA-CC-C--T-C-G---G----T---CT-GG-AT---C--CG-AT-CTTAGACTGGGAATGA
* * * *
4442 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCCGTCGGCCAAAGGGGCAGG
491 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAAAGGGGCAGG
* ** * * * *
4507 ATGCGCAAGCC-AGGGTTCGATCCAGACCCCCTCAGCGTGCTACT-GTTCCTGCTGTCGCAACCC
556 ATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCAGCGTGCTGCTCGATCCTGCTGCCGCAACCC
* * * * * *
4570 TCGGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGATC
620 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAATCGACGAAACGAGC
** * * *
4635 AGGCGGACGGGCGGGCACTATACCGACCAGAGAGACGGGATGCGCT-AGTCATGGATCGATAGGG
685 AGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG-TAAGCCGTGGATCGATAGGG
* *
4699 TGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAA
749 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
4764 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
814 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
4828 TTTCATGATTTTTGAAACTTTTTACGGTTGGAGATTTTTTTAAAATTTTTTCA-AAGGAGTTTTG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* *
4892 GCCCC-AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTGAGCTAAAA
66 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
4956 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAAACACTTTAATT
131 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATG
*
5021 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTG
195 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
5086 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTGCACAC
260 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
5151 CCCCTCAGCCCCCCCAATCGCTAGAACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGG
325 CCCCTC-GCCCCCCCAATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGG
* * *
5216 TGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAACACATGCCTGAG-CCAACATGTGCAACCG
389 TGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGC-ACCG
*
5280 CAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
453 CAACCCTCGGTCTGGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
5344 AATGAGCGTGCAGGCACTCAGCCAGCCAGAGGGGCATGATGCGTAAGCCGAGGATCG-GCTGGGT
518 AACGAGCGTGCAGGCGCTCAGCCAGCCAAAGGGGCAGGATGCGCAAGCCGAGGATCGATC-GGGT
* * ** *
5408 CCCCCTCAGCGTGCTGCT-GATCCTGCTGCCGCAATCCTCGATTTGATCTGATCTTAGACTGGGA
582 CCCCCTCAGCGTGCTGCTCGATCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGA
*
5472 ATGAACTCCGTATGCCTAAACCAATCGACGAAACGAGC-GGAGGACGGGCGGGCACTACGCCGGC
647 ATGAACTCCGTATGCCTAAACCAATCGACGAAACGAGCAGGCGGACGGGCGGGCACTACGCCGGC
* * *
5536 CAGAGAGGCGGGATGCGTAAGTCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
712 CAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* ** * *
5601 GTTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATTATTGCCCCTTAAGCCTTCA
777 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
5666 TGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATT
842 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
5702 TCTCACGATTTTTTAAACTTTTTACGATTCGTGATTTTTTT-AAATTTTTTTAGAAGGAGTTTTG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* * *
5766 GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTGAAA
66 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
5831 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
131 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
5896 CTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGCA-TTCTCGAGGTTTG
196 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-AGTTCTCGAGGTTTG
* * * ** * *
5960 ATGAGGTATATGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGCAAAA
260 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * * *
6025 CCCC-CGACCCCCTCAATCGCCGGAACCCTAATGCCACCGATCAAGTTCT-C--TGA-----C--
325 CCCCTCG-CCCCCCCAATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGG
* * * *
6079 -GATGGTGCCCCGGGTGAAAAAAAATACGGCACCAGCACGTGCCCGAGCCCAGCATGTGCACCGA
389 TGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCG-
* * * *
6143 CAACCCTCGGT-TCGG-TCCGATCTTATACTAGGAATGAACTCCATATGCCAAAGTCAACCCACG
453 CAACCCTCGGTCT-GGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* ** * * * * * * * *
6206 AAATGAGCGTGTGGGTGCTAAGCCGGCTAAAGGGGTAGGATGCACAAGCCGGGGATCGATCAGGT
517 AAACGAGCGTGCAGGCGCTCAGCCAGCCAAAGGGGCAGGATGCGCAAGCCGAGGATCGATCGGGT
* * * * * * * * * *
6271 CCCCCTCTGCATGCTG-TCGATCCCGCTACCACAACCCTTGGTCTGGTCCTATCTTAGACTAGGA
582 CCCCCTCAGCGTGCTGCTCGATCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGA
* * * * * * * *
6335 ATGAACTCCGTATGCCTAAGCCAATCAATGAAATGAGCGGGCGGGCGGGAGGGCACTACGCCAGC
647 ATGAACTCCGTATGCCTAAACCAATCGACGAAACGAGCAGGCGGACGGGCGGGCACTACGCCGGC
** *
6400 CAGAGAGACGGGATGCACAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
712 CAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
6465 ATTTCTGCTATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCT
777 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
6530 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
842 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
6566 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTCAAAATTTTTTTAGAAGGAGTTTTG
1 TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* *
6631 GCCCCAAACCTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAA
66 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
6695 ACT-GAAACTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTTAGACACTTTAATG
131 ACTCG-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
6759 GCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
195 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
6824 ATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTGTGCGCACA-
260 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* ** *
6888 CCCCTC-CCGCCCCCAATCG-TCGGAACCCCAATGCCGCCGGTCAGGTTCTCAGACGATGCTCCA
325 CCCCTCGCC-CCCCCAATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCG
* * * *
6951 GCGATGGTGCCCCTGGCG-AAAAAAATGCAGCACCAGCAAATGGCC-GAGCCCAGCATGTGCACC
388 GTGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACAT-GCCTGAGCCCAGCATGTGCA-C
* * * * *
7014 CGCAACCCTCGATCCGG-TCTGATCTTAGACTGGGAATGAACTCGGTATGCCTAAGTCAA-CCAT
451 CGCAACCCTCGGTCTGGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
7077 GACACGAGCGTACGGGCGGCTCCAGCGA-CCAGAGGGGCAGGATGGCGCAAGCCGGGTGATCGGC
516 GAAACGAGCGTGCAGGC-GCT-CAGCCAGCCAAAGGGGCAGGAT-GCGCAAGCCGAG-GATC-GA
* * *
7141 TTGAGGT-CCCCTCTA-CGTGCTGCTCGATGCCTACTGCTGGCAACCTCTCGGGTCCGCATCCGA
576 TCG-GGTCCCCCTC-AGCGTGCTGCTCGAT-CCTGCTGC-CGCAACC-CTC-GGTCCG-ATCCGA
*
7204 TACTTAGACTGGGAATGAACTCCGTATGCCTAAACGCAA-CTGAC-AAAC-ATG-A-GCGGGC-G
634 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAAC-CAATC-GACGAAACGA-GCAGGCGGACGG
* **
7263 GC-GACACTACGTAGTGCCAGAGAGGACGGGAT-CGGTGCAAGCCGTGGATCGATAGGGTGGTAG
695 GCGGGCACTACGCCG-GCCAGAGA-GACGGGATGC-GT--AAGCCGTGGATCGATAGGGTGGTAG
* *
7326 GTGGGTTCACAGCACATCTTCATATTTCTGCCAGTGCCAATGCCATTTTTATGGCTTTGTAAGAT
755 GTGGGTTTA-GGCACATCTTCATATTTCTGCCA-TGCCAATGCCATTTTTATGGC-TTGTAA-AT
**
7391 TCATTACATATGGTCCCTTAAGCCTCTCATGTGAAGTTTCATGGCAAAGTACGACTCCATTTCTA
816 TCA-TACA-ATGGTCCCTTAAGCCT-TCATGTGAAGTTTCATGGC-AAG-ACGACTCGTTTTCTA
7456 TTT
876 -TT
* * *
7459 TTTCACGATTGTTTGAAACTTTTTACAGTTCCAAATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
1 TTTCACGATT-TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
* *
7524 GGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAA
65 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
7589 AACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCCTCATTTCAGACACTTTAATG
130 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
7653 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
195 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
7718 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGTGCACAC
260 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * * *
7783 CCCCT-GCTCCCCCAATCGCCGGAACCCCAATGTCGTCGTTCAGGTTCTCCGGCGATGCTCCGAC
325 CCCCTCGCCCCCCCAATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCT-C--C
* * *
7847 GATGCTCCAACGATGGTGGCCCGGGC-AAAAAAAATGTGGCTCCAGCACAT-CC-GAGCCCAGCA
387 G--G-T-----GATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCA
** * * * * * * * *
7909 TGTGTGCCTGTAACCCTTGATCCGG-TCCAATCTTAGACTGGGAATGAACTCTGTATGCCTATGC
444 TGTGCACC-GCAACCCTCGGTCTGGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
*
7973 CAACCGACGAAACGAGCG
508 CAACCCACGAAACGAGCG
7991 GGCCGGCGGG
Statistics
Matches: 2742, Mismatches: 314, Indels: 198
0.84 0.10 0.06
Matches are distributed among these distances:
862 49 0.02
863 233 0.08
864 413 0.15
865 58 0.02
866 2 0.00
870 3 0.00
871 1 0.00
872 17 0.01
873 143 0.05
874 397 0.14
875 280 0.10
876 17 0.01
877 10 0.00
878 5 0.00
879 14 0.01
880 13 0.00
881 19 0.01
882 8 0.00
883 69 0.03
884 25 0.01
885 22 0.01
886 104 0.04
887 107 0.04
888 108 0.04
889 17 0.01
890 18 0.01
891 24 0.01
892 15 0.01
893 12 0.00
894 279 0.10
895 67 0.02
896 4 0.00
897 2 0.00
899 7 0.00
900 2 0.00
901 15 0.01
902 50 0.02
903 70 0.03
904 11 0.00
905 32 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCTCGCCCCCCCAATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTG
ATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCGCAA
CCCTCGGTCTGGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCAGGCGCTCAGCCAGCCAAAGGGGCAGGATGCGCAAGCCGAGGATCGATCGGGTCCCC
CTCAGCGTGCTGCTCGATCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAACCAATCGACGAAACGAGCAGGCGGACGGGCGGGCACTACGCCGGCCAGA
GAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATT
Found at i:8829 original size:707 final size:705
Alignment explanation
Indices: 7193--10076 Score: 4026
Period size: 699 Copynumber: 4.1 Consensus size: 705
7183 ACCTCTCGGG
* * *
7193 TCCGCATCCGATACTTAGACTGGGAATGAACTCCGTATGCCTAAACGCAACTGAC-AAAC-A-TG
1 TCCG-ATCCGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CAACCGACGAAACGAGCG
* * * * *
7255 AGCGGGC-GGC-GACACTACGTAGTGCCAGAGAGGACGGGATCGGTGCAAGCCGTGGATCGATAG
63 GGCGGGCGGGCGGGCACTACGTCG-GCCAGAGAGG-CGGGAT--GCGCAAGCCATGGATCGATAG
* *
7318 GGTGGTAGGTGGGTTCACAGCACATCTTCATATTTCTGCCAGTGCCAATGCCATTTTTATGGCTT
124 GGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTGCCA-TGCCAATGCCATTTTTATGGC-T
7383 TGTAAGATTCATTACATATGGTCCCTTAAGCCTCTCATGTGAAGTTTCATGGCAAAGTACGACTC
186 TGTAA-ATTCA-TACA-ATGGTCCCTTAAGCCT-TCATGTGAAGTTTCATGGC-AAG-ACGACTC
**
7448 CATTTCTATTTTTTCACGATTGTTTGAAACTTTTTACAGTTCCAA-ATTTTTTTAAAATTTTTTC
245 GTTTTCTA-TTTTTCACGATT-TTTGAAACTTTTTACAGTT-CAAGATTTTTTTAAAATTTTTTC
*
7512 AGAAGGAGTTTTGGCCCCAAAC-TTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
307 AGAAGGAGTTTTGGCCCCAAACTTTG-TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
7576 AACTTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCCTCATTTC
371 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTC
*
7640 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
436 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
7705 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGA-ACA
501 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-ACACA
* * * ** * * *
7769 TCATGTGTGCACACCCCCTGCTCCCCCAATCGCCGGAACCCCAATGTCGTCGTTCAGGTTCTCCG
565 TCATGTGCGCACACCCCCCGCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCA
** *
7834 GCGATGCTCCGACGATGCTCCAACGATGGTGGCCCGGGCAAAAAAAATGTGGCTCCAGCACAT--
630 GCGA---T--G--G-TGC-CC--C----G-GG--C--G-AAAAAAAATACGGCACCAGCACATGC
** * *
7897 CCGAGCCCAGCATGTGTGCCTGTAACCCTTGA
674 CCGAGCCCAGCATGTGCACCCGTAACCCTCGA
* * * *
7929 TCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTATGCCAACCGACGAAACGAGCGGGC
1 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * *
7994 CGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAGGCCATGGATCGATAGGGTGGTG
66 GGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
*
8059 GGTTGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
131 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
8124 TACAATGGTCCCTTAAGCCTTCATGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
196 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
*
8189 GATTTTTGAAACTCTTTACAGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
261 GATTTTTGAAACTTTTTACAGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
*
8254 AACTTTGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
326 AACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
8319 AGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATAGCTACAG
391 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTG
*
8384 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
456 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
* *
8449 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACAGCCCCCAC
521 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCC-C
* * * * * * * *
8514 GCCCCCCCAACCATC-GAGACTCGAACGCCGTCGATCATGTTCTCCGGCGATGGTGCCCTGGGCG
584 GCCCCCCCAATCATCGGA-ACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGGTGCCCCGGGCG
** *
8578 AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTTGTAACCCAC-A
648 AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGA
* * * *
8635 GTCCGGTCTGATCTTATACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGG
1 -TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * *
8700 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGAATGCGCAAGCCATGGATCGATAGGGTGGT
65 CGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGT
*
8765 AGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATTTTTATGGCTTGTAAATTC
130 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
8830 ATACAATGGTCCCTTAAGCCTTCTTGTGAAGCTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
195 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * ** *
8895 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCC
260 CGATTTTTGAAACTTTTTACAGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* * *
8960 AAACTTGGTAGAGGTGATCCTTGTATTTTTTTTGCCATGCACAAAAAAATTCAGCTAAAAACTCG
325 AAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
9025 AAGTGTA-AGAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
390 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACT
*
9089 GGCAGCAAACCTATAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
455 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* *
9154 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCTG
520 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCG
* * * *
9219 -CCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCAGCGATGGTGCCCCGGGTGAA
585 CCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGGTGCCCCGGGCGAA
* * * * * * * *
9283 AACAAATACGGCACTAGAACATTCCCTAGCCCAGCATGTGCACCCGCAACCCTTGG
650 AAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGA
* *
9339 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-TGAGC
1 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * *
9400 GGGCGGGCGGGCACTACGTCGGCCAGAGGGGCGGGACGCGCAAGCCGTGGATCGATAGGGTGGTA
66 GGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
9465 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
131 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
9530 TATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCCATTTTTCAC
196 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
9595 AATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAACTTTTTTCAGAAGGAGTTTTGGCCCCA
261 GATTTTTGAAACTTTTTACAGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* *
9660 AACTTTGTAGATGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCCAAAAACTCGA
326 AACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
9724 AGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTG
391 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTG
* *
9789 GCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
456 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
* * * *
9854 ATAGGGGGACAATATAAGGGCCAAGTACCAGCACACATCACACATCATGTGCGCCCACCCCCCGG
521 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGC
* * *
9919 CCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGTGACGGTGCCCCGAGCGAAA
586 CCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGGTGCCCCGGGCGAAA
* * * * **
9984 ACAAATGCAGCTCCAGCACATGCCCGAGCCCAGCATGTGTGCCCGTAACCCTCGA
651 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGA
* * *
10039 TCCGATCTGATCTTAGATTGGGAATGAACTCCTTATGC
1 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
10077 TTAGACTGGG
Statistics
Matches: 1952, Mismatches: 177, Indels: 74
0.89 0.08 0.03
Matches are distributed among these distances:
698 29 0.01
699 459 0.24
700 137 0.07
702 3 0.00
703 141 0.07
704 3 0.00
705 26 0.01
706 172 0.09
707 394 0.20
708 1 0.00
710 2 0.00
711 1 0.00
717 2 0.00
718 3 0.00
719 1 0.00
721 1 0.00
722 3 0.00
723 140 0.07
724 164 0.08
725 20 0.01
726 40 0.02
727 18 0.01
728 16 0.01
729 4 0.00
730 5 0.00
731 6 0.00
732 21 0.01
733 29 0.01
734 66 0.03
735 6 0.00
736 16 0.01
737 13 0.01
738 10 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (705 bp):
TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
GGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTGAAACTTTTTACAGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
AACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTG
GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGC
CCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGGTGCCCCGGGCGAAA
AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGA
Found at i:10086 original size:26 final size:26
Alignment explanation
Indices: 10050--10102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10040 CCGATCTGAT
* *
10050 CTTAGATTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10076 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10102 C
1 C
10103 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11244 original size:874 final size:871
Alignment explanation
Indices: 9326--11619 Score: 3256
Period size: 874 Copynumber: 2.6 Consensus size: 871
9316 GCATGTGCAC
*
9326 CCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CCGCAACCCTTGGTCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *
9391 -AAA--ATG-AGCGGGCGGGCGGGCACTACGTCGGCCAGAGGGGCGGGACGCGCAAGCCGTGGAT
66 GAAAGGA-GCAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
*
9452 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
130 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* *
9517 GCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
9582 TTCCATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAACTTTTTTCAGAAGG
260 TTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTTAA-TTTTTTCAGAAGG
* * * * *
9647 AGTTTTGGCCCCAAACTTTGTAGATGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCA
324 TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCA
* *
9711 GCCAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACT
389 GCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* **
9776 TTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
9841 GGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACACATCACACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACACATCACACATCATGTGC
* * *
9906 GCCCACCCCCCGGCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGTGACGGT
584 GCACACCCCCCGGCCCCCCAATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTCCAGTGACGGT
* * * ** *
9971 GCCCCGAGCGAAAACAAATGCAGCTCCAGCACATGCCCGAGCCCAGCATGTGTGCCCGTAACCCT
649 GCCCCGAGCAAAAACAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCT
*
10036 CGATCCGATCTGATCTTAGATTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTAT
714 CGA--CGATC---TC------------TGAACTCCTAATGCTTAGACTGGGAATGAACTCCGTAT
* * * * *
10101 GCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATTCAGAAG
762 GCCTAAGTCAACCCACAAAACAAGCGTACGAGCGCTCAGTCGGCCAGAGGGACAGGATGCAGAAG
* * * **
10166 TCGGGGATCGATCGGGTCCCCCTCAACGTGCTGCTGATCCTACTA
827 CCGGGGATCGACCGGGTCCCCCTCAACATGCTGCCAATCCTACTA
** * * *
10211 CCATAACCCTCGATCC-AGTCAGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGA
1 CCGCAACCCTTGGTCCGA-TCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
10275 CGAAAGGAGCGGGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGGCGGGATGCGCAAGCCGTGGA
65 CGAAAGGAGC-AGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
*
10340 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTAT
129 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* *
10405 GGCTTGTAAATTCATACAACGGTGCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
*
10470 TTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGTGATTTTTTTTAATTTTTTC-GAAGG
259 TTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTTAATTTTTTCAGAAGG
* * *
10534 TTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGGTGGGCATGCACAATAAAATTCA
324 TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCA
*
10599 GCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC-GAACAC
389 GCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACAC
* * *
10663 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGCGTTCTTG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
* * *
10728 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACACATCACACATCATGTG
*** * * *
10793 CGCACACCCCCTCGGCCCCCTTGTCGTTGGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATG
583 CGCACACCCCC-CGGCCCCCCAATCATCGGAACCCCAATGCCGCCAGTCAGGTTCT-C--C-A-G
* * *
10858 CTCCGACGATGGTGCCCCGGGCAAAAAGAAATGCAGCACGAGCACATGCCCAAGCCCAGCATGTG
642 -T--GAC---GGTGCCCCGAGCAAAAACAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTG
** *
10923 CACTTGCAACCCTC-A-G-TC-C-G-A-TCC-AAT-CTTAGACTGGGAATGAACTCTGTATGCCT
701 CACCCGCAACCCTCGACGATCTCTGAACTCCTAATGCTTAGACTGGGAATGAACTCCGTATGCCT
** *
10979 AAGTCAACCCACAAAATGAGTGTACGAGCGCTCAGTCGGCCAGAGGGACAGGATGC-GCAAGCCG
766 AAGTCAACCCACAAAACAAGCGTACGAGCGCTCAGTCGGCCAGAGGGACAGGATGCAG-AAGCCG
** * * * *
11043 GGGATCGACCGGGTCCTTCTCAGCATGCTGCCAATTCTGCTG
830 GGGATCGACCGGGTCCCCCTCAACATGCTGCCAATCCTACTA
* * ** *
11085 CCGCAACTCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAAACCTAAGGCAACCGAC
1 CCGCAACCCTTGGTCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* ** *
11150 GAAAGGAGCAGACGGGCGGGCGGGCGCTACGTCGGCCAGACTGGCAGGATGCGCAAGCCGTGGAT
66 GAAAGGAGCAG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
11215 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
130 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* *
11280 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTATGTGAAGTTTCATGGCAAGATGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
11345 TTCTATGTTTCACGATTTTCGAAACTTTTTATGATTCGAGATTTTTTTTAAATTTTTTCAGAAGG
260 TTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTT-AATTTTTTCAGAAGG
*
11410 TGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCA
324 TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCA
11475 GCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
11540 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
11605 GGTTTGATGAGGGAT
519 GGTTTGATGAGGGAT
11620 TGTAGACACC
Statistics
Matches: 1268, Mismatches: 115, Indels: 61
0.88 0.08 0.04
Matches are distributed among these distances:
873 2 0.00
874 391 0.31
875 12 0.01
876 208 0.16
877 2 0.00
878 1 0.00
884 1 0.00
885 57 0.04
886 3 0.00
887 53 0.04
888 208 0.16
889 259 0.20
890 1 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 3 0.00
896 1 0.00
897 3 0.00
899 1 0.00
900 58 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (871 bp):
CCGCAACCCTTGGTCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAAGGAGCAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
AATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTTAATTTTTTCAGAAGGTG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
TTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACACATCACACATCATGTGCGC
ACACCCCCCGGCCCCCCAATCATCGGAACCCCAATGCCGCCAGTCAGGTTCTCCAGTGACGGTGC
CCCGAGCAAAAACAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCG
ACGATCTCTGAACTCCTAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
ACAAGCGTACGAGCGCTCAGTCGGCCAGAGGGACAGGATGCAGAAGCCGGGGATCGACCGGGTCC
CCCTCAACATGCTGCCAATCCTACTA
Found at i:11712 original size:6 final size:6
Alignment explanation
Indices: 11701--11726 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
11691 TTATTTTGTA
11701 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
11727 TGTATTTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:11732 original size:21 final size:22
Alignment explanation
Indices: 11691--11734 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
11681 AATTCGGTTC
11691 TTATTTTGTATTATTTTTATTT
1 TTATTTTGTATTATTTTTATTT
11713 TTATTTT-TATT-TTTTGTATTT
1 TTATTTTGTATTATTTT-TATTT
11734 T
1 T
11735 AGGCATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 4 0.19
21 10 0.48
22 7 0.33
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.80
Consensus pattern (22 bp):
TTATTTTGTATTATTTTTATTT
Found at i:11923 original size:21 final size:21
Alignment explanation
Indices: 11892--11945 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
11882 TCTTGTAATA
*
11892 TTTTTTGGATTTATC-TTATT
1 TTTTTTTGATTTATCGTTATT
11912 TTATTTTTGA-TTATCTGTTATT
1 TT-TTTTTGATTTATC-GTTATT
*
11934 TTTTTTTAATTT
1 TTTTTTTGATTT
11946 TTAATTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 9 0.32
ACGTcount: A:0.17, C:0.04, G:0.07, T:0.72
Consensus pattern (21 bp):
TTTTTTTGATTTATCGTTATT
Found at i:11953 original size:6 final size:7
Alignment explanation
Indices: 11936--11961 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
11926 CTGTTATTTT
11936 TTTTTAA
1 TTTTTAA
11943 TTTTTAA
1 TTTTTAA
11950 TTTTTAA
1 TTTTTAA
11957 TTTTT
1 TTTTT
11962 TTCTTTTTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAA
Found at i:11992 original size:13 final size:13
Alignment explanation
Indices: 11957--11997 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
11947 TAATTTTTAA
11957 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
** *
11970 CGTTTATCTTTTT
1 TTTTTTTCTTTTT
11983 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
11996 TT
1 TT
11998 GAGGCTGTGA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.02, C:0.10, G:0.02, T:0.85
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:20259 original size:26 final size:26
Alignment explanation
Indices: 20223--20275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20213 CTTGTCCAAT
*
20223 CTTAGGCTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
20249 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
20275 C
1 C
20276 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:22437 original size:874 final size:863
Alignment explanation
Indices: 18368--23622 Score: 5898
Period size: 900 Copynumber: 6.0 Consensus size: 863
18358 TTATGTGGAA
* * * *
18368 CAGGTTCTCCGATGATGCTCCAGCGATGGTGCCCCAGGCAAAAAAAAATACGGCACCAGCACATG
1 CAGGTTCTCCGGT-ATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATG
* * * ** * *
18433 CCCGAGCCCAGCATGTGTACCTGCAACCCTCAG-TCCAATTCAATCTTAGACTGGGAATGAACTC
65 CCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCTGATGCGATCTTAGACTGGGAATGAACTC
*
18497 CGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
130 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * * * *
18562 TCAAGCCAGGGATCGACCGGGTCCCCCTCAGCGTGCTGCCAATCTTGCTGTCATAACCCTCGGTT
195 GCAAGCCGGGGATC-ACTGGGTCCCCCTCAGCATGCTGCCGATC-T-CTGCCATAA--CTC----
** * * * * * *
18627 TGGTCCAATCTTAGACTCGGAATTAACTCCATATGCCTAAGACAACCAACGAAACGAGCGGACGG
251 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G
* *
18692 GAGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGG
315 GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * ** * ** * *
18757 TGGTTTTAGGCACGTCTTCATATTTCAGCTTTTCCAATGCTGTATTTATGGCTTTTAAATTCATA
380 TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
18822 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTC-TTGTCAAGACGACTCGTTTTCTATTTTTCACG
445 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGT-AAGACGACTCGTTTTCTATTTTTCACG
* * *** *
18886 ATTTTTTAAACTTTCTACGGTTCAAGATTTTTTTAAATTTTTTCAGAAGGATTTTTGGCCCCAAA
509 ATTTTTGAAACTTTTTACGGTTTGGGA-TTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * * * * *
18951 CTTGGTAGACATGATACTTGTATCTTTCTGGGAATGCAAAAAAAAATTCAGCTAAAAACTCAAAG
573 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
19016 TGTATAGG-TTTTCGTGACCATTTGAAAAAAATG-CCCCATTTCAGACACTTTAGTGGCTACTGG
638 TGTACAGGATTTT-GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
19079 CGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGA
702 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
19144 TAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
767 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* *
19208 CCCCCAATCG-CTGGAACCCCAATGTCGCCGGT
832 CCCCCAATCGTC-GGAACCCCAATGCCGTCGGT
* * * * * **
19240 CAGGTTCTCCGGTGATGCTCTGGCGATGTTGCCCTGGGCGAAAAAAAATACAACACCAGCACATG
1 CAGGTTCTCCGGT-ATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATG
* * * * * * *
19305 CCTGAGCCCAGCATGTACACCCGCAAACCTCGG-CCCGATCCGATCTTAGACTGGGAATGAAATC
65 CCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCTGATGCGATCTTAGACTGGGAATGAACTC
* *
19369 TGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
130 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * ** * *
19434 GCAAGCCGGGGATTGACCGGGTCCCCCTCAGTGTGCTGCCTATC-CTGCCACCACAACCCTCGGT
195 GCAAGCCGGGGA-TCACTGGGTCCCCCTCAGCATGCTGCCGATCTCTG---CCATAA--CTC---
* * *
19498 TTGATCTGATCTTAGACTGGGAATGAACTGCGTAAGCCTAAGCCAACCGACGAAACGAGCGGGCG
251 -TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-
* * *
19563 GGCGGGCGGGCACTACGTCGGCCAGAGAGGCTGGATGCGCAAGCGGTGGATCGATAGGGTGGTAG
314 GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
19628 GTGGGTTTAGACACATCTTTATATTTCTACCCTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
379 GTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
19693 ATAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
444 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCACG
* **
19758 ATTTTGGAAACTTTTTACGGTTTGGGAGTTTTTTAAAATTTTTTCAGAAGGCA-TTTTGGCTTCA
509 ATTTTTGAAACTTTTTACGGTTTGGGA-TTTTTT-AAATTTTTTCAGAAGG-AGTTTTGGCCCCA
* * * * *
19822 AACTTGGTTGACGTGATCCTTGTACTTTTGGTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
571 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * *
19887 AGTGTACAGGATTTTTTGACCATTTGAAAAAAGTGTCACCGTTTTAGACACTTTAATGGCTACTG
636 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
19952 GCAGCAAACCTGCAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
701 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
* * * *
20017 ATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAAGTGCGCATACCCCCCGG
766 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-G
*
20082 GCCCCCCAATCGTCGGAACCTCAATGCCGTCGGT
830 GCCCCCCAATCGTCGGAACCCCAATGCCGTCGGT
* **** * * *
20116 CAGGTTCTCTGGTGATGCTAAAACGATGGTGGCCCGGGC-GAAAAAAATGCGACACCAG-ACATG
1 CAGGTTCTCCGGT-ATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATG
* * ** *
20179 -CCGAAGCCTAGCATGTGCACCCACAACACTTGATCTTGTCCAATCTTAGGCTGGGAACGAACTC
65 CCCG-AGCCCAGCATGTGCACCCGCAAC-C-----C---T-C--GGTT---CT------G-A-TG
* * *
20243 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTG
106 CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * ** * * *
20308 CTCAGTCGGCCAGAGGGGCAGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCACTA-CGTGCTA
169 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCACT-GGGTCCCCCTC-AGCATGCTG
* * * ** *
20372 TCGATCCTGCTACCGTAACCCTTCATCTGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCT
232 CCGAT-CT-CTGCCATAA-----C-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
20437 AAGCCAACCGACGAAACAAGCGGGGCGGCGGGTGGGCACTATGCCGACCAGAGAGGCGGGATGCG
289 AAGCCAACCGACGAAACGAGC-GGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCG
* * *
20502 CAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCATT
353 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
*
20567 GCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTA
418 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTA
* * * * *
20632 GGACGACTTGTTTTCTATTTTGCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAAAA
483 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTT--AAAT
* ***
20697 ATTTTCAGAAGG-GCTTTTGGCCCCAAACTTGGTAGACGCCATCCTTGTATTTTTGTTGGCATGC
546 TTTTTCAGAAGGAG-TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
* * * *
20761 AAAAAAAAATTCATCCAAAAACTCGTAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
610 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
20826 CATTTCAGACACTTTAATGGCTACTGGCAGCAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
675 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
20891 TCTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
740 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
20956 ACACATCATGTGCGCACACCCCCTGGTCCCCCCAATCGTCAGAACCCCAATGTCGCCGGT
805 GCACATCATGTGCGCACACCCCCCGG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGT
* *
21016 CAGG-T-T-C----T--T-CGACGATGGTGCCCCGGGCAAAAAAAAATGTGGCACCAGCACATGC
1 CAGGTTCTCCGGTATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATGC
* *
21071 CCGAGCCTAGCATGTGCACTCGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCA
66 CCGAGCCCAGCATGTGCACCCGCAACCC----T-C-G---G---TT---CT--G-ATG-----C-
* * * *
21136 TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGAGCGCT
107 GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * ** * * *
21201 TAGCCAGCCAAAGGGGCAGGATGCACAAGACGGGGATCGGTCAGGTCCCCGTCAGCATGCTGCCA
171 CAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCACT-GGGTCCCCCTCAGCATGCTGCCG
* * * *
21266 ATCTTGCTGCCACAACCCTCAGTCCATTTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
235 ATC-T-CTGCCATAACTCT-GGT-C----TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * **
21331 CCAACCGACGAAA--A--------CGAGC-GGCACT---CC-GCCAGAGAATGC-GCA-AAGCAA
292 CCAACCGACGAAACGAGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAG-AGGCGGGATGCGCAA
* * * * * *
21379 -TCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCATCATATATCTACCATGCTAATGCC
356 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
* * *
21443 ATTTTTATGGCTTGTAAATTCATACACTGGTCGCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
421 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGA
* * * **
21508 CGACTTGTTTTCTATTTTTCACGATGTTTAAAACTTTTTACGGTTTGGGATTTTTTTAAAACATT
486 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGA-TTTTTT-AAATTTT
*
21573 TTCAGAAGGAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAA
549 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* *
21637 AAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTCTGACCATTTGAAAAAAGTGTCCCCATT
614 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
21702 CCAGACACTTTAATGGCTACTGGCAGCAGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTC
679 TCAGACACTTTAATGGCTACTGGCAGC--AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
21767 TGAGTTCTTGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
742 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
21832 GCATCATGTGCGCGCACCCCCCGACCCTCCCAATCGTCGGAACCCCAATGCCGTCGAT
807 ACATCATGTGCGCACACCCCCCGGCCC-CCCAATCGTCGGAACCCCAATGCCGTCGGT
* * *
21890 CAGGTTCTCTGGCTATGCTCCGGCGATGGTGGCCCGGGC-AAAAAAAATGTGGCACCAGCACATG
1 CAGGTTCTCCGG-TATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATG
* ** * * *
21954 CTCGAGCGTAACATGTGCACTCGCAACCCTCGGTTC-GGTGCGATCTTAGACTGGGAATGAACTC
65 CCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCTGATGCGATCTTAGACTGGGAATGAACTC
* * * * * *
22018 CATATGCTTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTAGGATGC
130 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* *
22083 GCAAGCCGGGGATCAACTGAGTCCCCCTCAGCATGCTGCTGATC-CTG-C-TAA-TCTGGTCTGA
195 GCAAGCCGGGGATC-ACTGGGTCCCCCTCAGCATGCTGCCGATCTCTGCCATAACTCTGGTCTGA
* * **
22144 TCTTAGACTGGGAATGAACTCTGTATGGCTAAGCCAACCGAAAAAACGAGCGGGCGTGCGGGCGG
259 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GCGGGCGG
* *
22209 GCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTATA
323 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
22274 GGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA-ACAATGGTC
388 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
22338 CCTTAAGCCTTCATGTAAAGTTTCATGGTAGGATGACTCGTTTTCTATTTTTCACGATTTTTGAA
453 CCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
22403 AATTTTTATGGTTTGGGATTTTTTAAAAATTTTTTTC-GAAGGAGTTTTGTCTCCAAACTTGGTA
518 ACTTTTTACGGTTTGGGATTTTTT--AAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
*
22467 GACGA-GATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACA
580 GAC-ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
22531 GG-TTTTGTGACCATTTGAAAAAAGTGTCACCA-TTCTAGACACTTTAATGGCTACTGGTAGCAA
644 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAA
* **
22594 ACCTGTATAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
708 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
* * * * *
22659 GCCAATATAAGGGCGAAGTACCATCACCCATTGCACATTATGTGCGCACACCACCCTGGCCCCCC
773 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCC
* *
22724 AATCGTCAGAACCCCAATACCGTCGGT
837 AATCGTCGGAACCCCAATGCCGTCGGT
* * * *
22751 CAGGTTCTCCGACG-ATGCTCCGGTGATGGTGCCCCGGGCGAAAAAGAATGCAGCACCAGCACAT
1 CAGGTTCTCCG--GTATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACAT
* * ** * * *
22815 GCCCTAGTCCAGCATGTGCACCCATAACCCTTGG-TCTGATCCGATCTTAAACTGGGAATGAACT
64 GCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCTGATGCGATCTTAGACTGGGAATGAACT
* * * *
22879 CTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGCCTGCCAGAGGGGCAGGATG
129 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATG
* ** * * * * *
22944 CGCAAGCCAGGGATCGGTCGGGTCACCCTCAGCGTGCTGCCGATCCTACTACTGCA-ACCCTCAG
194 CGCAAGCCGGGGATCACT-GGGTCCCCCTCAGCATGCTGCCGAT-CT-CTGC--CATA-ACTCTG
* * * * * * * *
23008 CCCAATTTGATTTTAGACTGCGAATGAACACCGTATGCCTAAACCAACCGACGAAATGA-C-TG-
253 ----GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
** * *
23070 AACGGGAGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAG
314 GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* **
23135 GTGGGTTTAGGCACATCTTCTTATTTCTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
379 GTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * ** *
23200 ACAACGGTCTCTTAAGCGTTCATGTGAAGTTTCATGGCAAGGTGACTCGTTTTCTACTTTTCACG
444 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCACG
* * *
23265 ATTTTTGAAACTTTTTATGGTTTGGGATTTCTTTAAATTTTTTCAGAAGGAGTCTTGACCCCAAA
509 ATTTTTGAAACTTTTTACGGTTTGGGATTT-TTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * *
23330 CCTGGTAGACGTGATCCTTGTATTTATGTTGGCATGCACAAAAAAGTTCAGCTAAAAACTCGAAG
573 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
23395 TGTACATGATATTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
638 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
23460 AGCAAACC-GATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
703 AGCAAACCTG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
* * *
23524 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCTCAGC
767 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * *
23589 CCCTCCAATCATTGGAACCCCAATGCCGCCGGT
832 CCC-CCAATCGTCGGAACCCCAATGCCGTCGGT
23622 C
1 C
23623 GGG
Statistics
Matches: 3753, Mismatches: 484, Indels: 293
0.83 0.11 0.06
Matches are distributed among these distances:
846 44 0.01
848 1 0.00
850 1 0.00
851 2 0.00
852 2 0.00
853 2 0.00
854 1 0.00
855 3 0.00
857 4 0.00
858 112 0.03
859 3 0.00
860 1 0.00
861 175 0.05
862 183 0.05
863 154 0.04
864 157 0.04
865 5 0.00
866 1 0.00
868 2 0.00
869 11 0.00
870 218 0.06
871 273 0.07
872 610 0.16
873 297 0.08
874 334 0.09
875 69 0.02
876 67 0.02
877 1 0.00
878 1 0.00
879 7 0.00
880 5 0.00
882 1 0.00
883 1 0.00
884 53 0.01
885 20 0.01
886 8 0.00
887 4 0.00
889 17 0.00
890 21 0.01
891 194 0.05
892 4 0.00
896 1 0.00
897 1 0.00
898 5 0.00
899 12 0.00
900 654 0.17
901 6 0.00
903 3 0.00
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (863 bp):
CAGGTTCTCCGGTATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATGC
CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCTGATGCGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
CAAGCCGGGGATCACTGGGTCCCCCTCAGCATGCTGCCGATCTCTGCCATAACTCTGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGGCA
CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCATGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTACGGTTTGGGATTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGTCGG
AACCCCAATGCCGTCGGT
Done.