Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168315.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_54, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 150814
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 3 of 4
Found at i:96415 original size:13 final size:14
Alignment explanation
Indices: 96369--96417 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
96359 ATAAATTCTT
96369 ATTAATT-AT-TTA
1 ATTAATTAATATTA
*
96381 ATATAATAGAATATTA
1 AT-TAAT-TAATATTA
96397 ATTAATTAATATT-
1 ATTAATTAATATTA
96410 ATTAATTA
1 ATTAATTA
96418 TCTAAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 2 0.06
13 12 0.39
14 6 0.19
15 6 0.19
16 5 0.16
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTAATTAATATTA
Found at i:96504 original size:17 final size:17
Alignment explanation
Indices: 96465--96506 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
96455 TTCAATTGTT
*
96465 TAATAAAATTAATATTA
1 TAATATAATTAATATTA
*
96482 TTATATAATTAA-ATTAA
1 TAATATAATTAATATT-A
96499 TAATATAA
1 TAATATAA
96507 CTATATAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 3 0.14
17 18 0.86
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATATAATTAATATTA
Found at i:96550 original size:13 final size:13
Alignment explanation
Indices: 96531--96561 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
96521 TTATATTATA
96531 ATAAATATTTAAT
1 ATAAATATTTAAT
*
96544 TTAAATATTTAAT
1 ATAAATATTTAAT
96557 ATAAA
1 ATAAA
96562 ATAATATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATAAATATTTAAT
Found at i:96587 original size:17 final size:17
Alignment explanation
Indices: 96481--96587 Score: 62
Period size: 17 Copynumber: 6.2 Consensus size: 17
96471 AATTAATATT
*
96481 ATTATATAATTAAATTA
1 ATTATATAATTAAATAA
* * *
96498 ATAATATAACTATATAA
1 ATTATATAATTAAATAA
96515 TATT-TATTATATTATAATAA
1 -ATTATA-TA-ATTA-AATAA
*
96535 A-TATTTAATTTAAAT-A
1 ATTATATAA-TTAAATAA
* *
96551 TTTA-AT-ATAAAATAA
1 ATTATATAATTAAATAA
96566 TATTATATAATTAAATAA
1 -ATTATATAATTAAATAA
96584 ATTA
1 ATTA
96588 AATATATTAT
Statistics
Matches: 66, Mismatches: 13, Indels: 22
0.65 0.13 0.22
Matches are distributed among these distances:
14 5 0.08
15 2 0.03
16 5 0.08
17 27 0.41
18 18 0.27
19 5 0.08
20 4 0.06
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (17 bp):
ATTATATAATTAAATAA
Found at i:96600 original size:34 final size:34
Alignment explanation
Indices: 96513--96600 Score: 81
Period size: 34 Copynumber: 2.6 Consensus size: 34
96503 ATAACTATAT
* * *
96513 AATATTTATTATATTATAATAAATATTTAATTTA
1 AATATTAAATATATTATAATAAATATATAATTTA
* ** *
96547 AATATTTAATATAAAATAAT-ATTATATAA-TTA
1 AATATTAAATATATTATAATAAATATATAATTTA
96579 AATAAATTAAATATATTATAAT
1 AAT--ATTAAATATATTATAAT
96601 GATAAACATT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
32 6 0.14
33 7 0.16
34 31 0.70
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (34 bp):
AATATTAAATATATTATAATAAATATATAATTTA
Found at i:97282 original size:181 final size:180
Alignment explanation
Indices: 96835--98046 Score: 970
Period size: 181 Copynumber: 6.8 Consensus size: 180
96825 TAAGTAGGAG
**
96835 ATTTAAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTG-CTATAAAACAATTGTTTCT
1 ATTTAAACAATTATCTATTTCAAATCATTATGACC-TTTGTTTTGTC-ATAAAACAATTGTTTCT
* ** * * *
96899 GTTCATACAAGTTTATTTC-AAATAAAATAATA-TAAATTTACTAA-ATTCCAAAGATTAATAAG
64 ATTCATACAAACTTA-TTCAAAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAG
* * * * * * * *
96961 TAA-AAATATATATAATAAATTTGTTTTTTGAA-CATGTTCAAAATAATTATGACC
127 TAAGAGATTTAAAAAATAAATCTGTTTATTGAATCA-GTTC-AAATAGTTATGACT
* *
97015 ATTTGAACAATTATCTATTTCAAATC--TATGACCTTTTGTTTTGTCATAAACCAATTGTTTCTA
1 ATTTAAACAATTATCTATTTCAAATCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTCTA
* *
97078 TTCATA-AAAGCTTATTCAAAATAAAATAATACTAATTTATTAAAATTGCAAAAATTAATAAGTA
65 TTCATACAAA-CTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTA
* * * * * *
97142 AAATATTTAAAAAATAAAAT-TGTTTACTGAGTGAGTTCAAATAATTATGACT
129 AGAGATTTAAAAAAT-AAATCTGTTTATTGAATCAGTTCAAATAGTTATGACT
* * * *
97194 ATTTAAATAATTATTTATTTCAAATCATTATGATCCTTTGTTTTGTAACAAAACAATTGTTTCTA
1 ATTTAAACAATTATCTATTTCAAATCATTATGA-CCTTTGTTTTGTCATAAAACAATTGTTTCTA
* * *
97259 TTCATACAAAATTGTTCAAAATAAAATAATACTAATTTATTAATATTTTAAAAA-T--TAA-TAA
65 TTCATACAAACTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAA
* * * * * * *
97320 GAGATTTAAAAACTATATCTGTTTA-TCAGACCAATTTAAATAGTTACGACT
130 GAGATTTAAAAAATAAATCTGTTTATTGA-ATCAGTTCAAATAGTTATGACT
* * * *** * * * * *
97371 ATTTGAATAATTATCTATCTCAAATTGGTATGAGCTTTTTTTTTTTCATAAAACAATTGTTTATG
1 ATTTAAACAATTATCTATTTCAAATCATTATGA-CCTTTGTTTTGTCATAAAACAATTGTTTCTA
* *** * * * ** *
97436 TCCATACAAACTTATTTGGAGTAAAATATTGCTAAACTAATAATA-TTCTAAAAATTAATAAGTA
65 TTCATACAAACTTATTCAAAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTA
* * * *
97500 AGAGATTTAAAAAATAAATGTATTTGTTGAA-CTAGTTCAAATAGTTAAGACT
129 AGAGATTTAAAAAATAAATCTGTTTATTGAATC-AGTTCAAATAGTTATGACT
* * * * * *
97552 A-TTATAATAATTATCTATTTCAAATCATTCTAATCTTTTGTTTAGTCATAAAATAATTG-TT-T
1 ATTTA-AACAATTATCTATTTCAAATCATTATGA-CCTTTGTTTTGTCATAAAACAATTGTTTCT
** ** ** *
97614 AGTTCATACATGCTTATTTGAAATAAAATAATACTCTTTTATTAACA-TTCAAAAAATTAATAAG
64 A-TTCATACAAACTTATTCAAAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAG
* * * *** * * *
97678 CAAG-GAATTAAAAAATAAATCTATTTACCAAATAATTTTAAATAGTTATGACT
127 TAAGAGATTTAAAAAATAAATCTGTTTATTGAATCAGTTCAAATAGTTATGACT
* ** * *
97731 ATTTAAACAATTATC-ATTTTAAAATTGTTATGACCTTTTGTTTTATCATAAAACAATTGCTTC-
1 ATTTAAACAATTATCTA-TTTCAAATCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTCT
* * * *
97794 ATTTCATA-AAAGCTTATCCAAAATAAAATAATATTACTTTATTAATATTTCAAAAATTAAGAAG
64 A-TTCATACAAA-CTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
** * * * * * *
97858 TTGGAGATTTAAAACATAAATAAT-TTTATTGAATCAATTCAAATACTTATGGCC
127 TAAGAGATTTAAAAAATAAAT-CTGTTTATTGAATCAGTTCAAATAGTTATGACT
* * * * *
97912 ATTTGAACAATTATATATTTCAAATCATTTTGAACTTTTGTTTTGTCATAAAACAATTGTTTTTC
1 ATTTAAACAATTATCTATTTCAAATCATTATG-ACCTTTGTTTTGTCATAAAACAATTGTTTCT-
* * * *
97977 A-TCATACAAGCCTAATT-AGAATAAAATAATACT-AGTTATTAATATTTCAAAAATTAATAAGT
64 ATTCATACAA-ACTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGT
98039 AAGAGATT
128 AAGAGATT
98047 ATCTGTTTAC
Statistics
Matches: 822, Mismatches: 171, Indels: 78
0.77 0.16 0.07
Matches are distributed among these distances:
176 7 0.01
177 129 0.16
178 70 0.09
179 138 0.17
180 190 0.23
181 270 0.33
182 17 0.02
183 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (180 bp):
ATTTAAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTCTAT
TCATACAAACTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAG
AGATTTAAAAAATAAATCTGTTTATTGAATCAGTTCAAATAGTTATGACT
Found at i:97867 original size:360 final size:352
Alignment explanation
Indices: 96835--98037 Score: 1043
Period size: 360 Copynumber: 3.3 Consensus size: 352
96825 TAAGTAGGAG
* * ** * *
96835 ATTTAAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTG-CTATAAAACAATTGTTTCT
1 ATTTAAATAATTATATATTTCAAATCATTATAATCTTTTGTTTTGTC-ATAAAACAATTG-TT-T
* * * *
96899 GTTCATACAAGTTTATTTCAAATAAAATAATA-TAAATTTACTAA-ATTCCAAAGATTAATAAGT
63 ATTCATACAAGCTTATTT-AAATAAAATAATACT--ATTTATTAATATT-CAAAAATTAATAAG-
* * * * * *** * *
96962 AAAAATATATATAATAAATTTGTTT-TTTGAAC-ATGTTCAAAATAATTATGACCATTTGAACAA
123 -AGAAT-TAAAAAATAAATCTATTTACCAGAACAAT-TT--AAATAGTTATGACTATTTGAACAA
* *
97025 TTATCTATTTCAAA-T-CTATGACCTTTTGTTTTGTCATAAACCAATTGTTTC-TATTCATAAAA
183 TTATCTATTTCAAATTGCTATGACCTTTTGTTTTATCATAAAACAATTG-TTCATATTCATAAAA
* * * *
97087 GCTTATTCAAAATAAAATAATACTAATTTATTAAAATTGCAAAAATTAATAAGTAAAATATTTAA
247 GCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAA
* * * *
97152 AAAATAAAATTGTTTACTGAGTGAGTTCAAATAATTATGACT
312 AAAAT-AAATTATTTATTGAATCAGTTCAAATAATTATGACT
* * * * *
97194 ATTTAAATAATTATTTATTTCAAATCATTATGATCCTTTGTTTTGTAACAAAACAATTGTTTCTA
1 ATTTAAATAATTATATATTTCAAATCATTATAATCTTTTGTTTTGTCATAAAACAATTG-TT-TA
** * * *
97259 TTCATACAAAATTGTTCAAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGAGA
64 TTCATACAAGCTTATT-TAAATAAAATAATACT-ATTTATTAATA-TTCAAAAATTAATAAGAGA
* * * * * * * *
97324 TTTAAAAACTATATCTGTTTATCAGACCAATTTAAATAGTTACGACTATTTGAATAATTATCTAT
126 ATTAAAAAATAAATCTATTTACCAGAACAATTTAAATAGTTATGACTATTTGAACAATTATCTAT
* * * * * * * * *
97389 CTCAAATTGGTATGAGCTTTTTTTTTTTCATAAAACAATTGTTTATGTCCATACAAA-CTTATTT
191 TTCAAATTGCTATGACCTTTTGTTTTATCATAAAACAATTGTTCATATTCATA-AAAGCTTATTC
** * * * ** *
97453 GGAGTAAAATATTGCTAAACTAATAATA-TTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAA
255 AAAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTTAAAAAATAA
* * *
97517 ATGTATTTGTTGAA-CTAGTTCAAATAGTTAAGACT
319 AT-TATTTATTGAATC-AGTTCAAATAATTATGACT
* * * *
97552 A-TTATAATAATTATCTATTTCAAATCATTCTAATCTTTTGTTTAGTCATAAAATAATTGTTTAG
1 ATTTA-AATAATTATATATTTCAAATCATTATAATCTTTTGTTTTGTCATAAAACAATTGTTTA-
* * *
97616 TTCATACATGCTTATTTGAAATAAAATAATACTCTTTTATTAACATTCAAAAAATTAATAAGCAA
64 TTCATACAAGCTTATTT-AAATAAAATAATACT-ATTTATTAATATTC-AAAAATTAATAAG--A
* *
97681 GGAATTAAAAAATAAATCTATTTACCA-AATAATTTTAAATAGTTATGACTATTTAAACAATTAT
124 -GAATTAAAAAATAAATCTATTTACCAGAACAA-TTTAAATAGTTATGACTATTTGAACAATTAT
* *
97745 C-ATTTTAAAATTGTTATGACCTTTTGTTTTATCATAAAACAATTGCTTCAT-TTCATAAAAGCT
187 CTA-TTTCAAATTGCTATGACCTTTTGTTTTATCATAAAACAATTG-TTCATATTCATAAAAGCT
* * * * ** *
97808 TATCCAAAATAAAATAATATTACTTTATTAATATTTCAAAAATTAAGAAGTTGGAGATTTAAAAC
250 TATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA
* * * * *
97873 ATAAATAATTTTATTGAATCAATTCAAATACTTATGGCC
315 ATAAATTA-TTTATTGAATCAGTTCAAATAATTATGACT
* * * *
97912 ATTTGAACAATTATATATTTCAAATCATTTTGAA-CTTTTGTTTTGTCATAAAACAATTGTTTTT
1 ATTTAAATAATTATATATTTCAAATCATTAT-AATCTTTTGTTTTGTCATAAAACAATTGTTTAT
* * *
97976 CATCATACAAGCCTAATTAGAATAAAATAATACTAGTTATTAATATTTCAAAAATTAATAAG
65 --TCATACAAGCTTATTTA-AATAAAATAATACTATTTATTAATA-TTCAAAAATTAATAAG
98038 TAAGAGATTA
Statistics
Matches: 680, Mismatches: 130, Indels: 67
0.78 0.15 0.08
Matches are distributed among these distances:
356 37 0.05
357 76 0.11
358 166 0.24
359 105 0.15
360 252 0.37
361 44 0.06
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (352 bp):
ATTTAAATAATTATATATTTCAAATCATTATAATCTTTTGTTTTGTCATAAAACAATTGTTTATT
CATACAAGCTTATTTAAATAAAATAATACTATTTATTAATATTCAAAAATTAATAAGAGAATTAA
AAAATAAATCTATTTACCAGAACAATTTAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
ATTGCTATGACCTTTTGTTTTATCATAAAACAATTGTTCATATTCATAAAAGCTTATTCAAAATA
AAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTATTT
ATTGAATCAGTTCAAATAATTATGACT
Found at i:98794 original size:14 final size:15
Alignment explanation
Indices: 98754--98802 Score: 57
Period size: 14 Copynumber: 3.3 Consensus size: 15
98744 ATTTAATTAT
*
98754 AAAATTAGTAAT-TA
1 AAAATTACTAATATA
*
98768 AATATTACTAATATA
1 AAAATTACTAATATA
98783 AAAATTA-TAATATTA
1 AAAATTACTAATA-TA
98798 AAAAT
1 AAAAT
98803 AAATTAATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 15 0.50
15 15 0.50
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (15 bp):
AAAATTACTAATATA
Found at i:99412 original size:20 final size:18
Alignment explanation
Indices: 99376--99424 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 18
99366 TAATACTAAT
*
99376 TTAATAGTATTTCAAAAA
1 TTAATAGTATTTAAAAAA
99394 TTAATAAGTGATTTAAAAAA
1 TTAAT-AGT-ATTTAAAAAA
*
99414 TAAAT-GTATTT
1 TTAATAGTATTT
99425 GCCAAATTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 4 0.15
18 7 0.26
19 3 0.11
20 13 0.48
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.41
Consensus pattern (18 bp):
TTAATAGTATTTAAAAAA
Found at i:99474 original size:18 final size:18
Alignment explanation
Indices: 99453--99500 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
99443 GTTAAGACTA
99453 CTATAATAATTA-ATATTT
1 CTATAATAATTACA-ATTT
*
99471 CTATAATTATTACAATTT
1 CTATAATAATTACAATTT
*
99489 GTAGTAATAATT
1 CTA-TAATAATT
99501 GAATTATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (18 bp):
CTATAATAATTACAATTT
Found at i:99519 original size:21 final size:21
Alignment explanation
Indices: 99493--99533 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
99483 CAATTTGTAG
99493 TAATAATTGAATTATTAAATT
1 TAATAATTGAATTATTAAATT
* *
99514 TAATAATTTATTTATTAAAT
1 TAATAATTGAATTATTAAAT
99534 AAATAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
TAATAATTGAATTATTAAATT
Found at i:99542 original size:21 final size:21
Alignment explanation
Indices: 99494--99544 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
99484 AATTTGTAGT
* * *
99494 AATAATTGAATTATTAAATTT
1 AATAATTTATTTATTAAATTA
99515 AATAATTTATTTATTAAA-TA
1 AATAATTTATTTATTAAATTA
99535 AATAAATTTA
1 AAT-AATTTA
99545 ATATTCCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
AATAATTTATTTATTAAATTA
Found at i:99590 original size:41 final size:36
Alignment explanation
Indices: 99516--99590 Score: 87
Period size: 41 Copynumber: 1.9 Consensus size: 36
99506 ATTAAATTTA
*
99516 ATAATTTATTTATTAAATAAATAAATTTAATATTCC
1 ATAATTTATTTATTAAATAAATAAATTAAATATTCC
*
99552 ATAATTTATATTATGTTAATAAAGTTATAATTAAATATT
1 ATAATTTAT-TTAT-TAAATAAA--TA-AATTAAATATT
99591 AAAATATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
36 9 0.28
37 4 0.12
38 7 0.22
40 2 0.06
41 10 0.31
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (36 bp):
ATAATTTATTTATTAAATAAATAAATTAAATATTCC
Found at i:100689 original size:10 final size:9
Alignment explanation
Indices: 100660--100708 Score: 52
Period size: 8 Copynumber: 5.8 Consensus size: 9
100650 AATTTAATAC
100660 TTATAATTA
1 TTATAATTA
*
100669 ATATTAATTA
1 TTA-TAATTA
100679 TTATAA--A
1 TTATAATTA
100686 TTATAA-TA
1 TTATAATTA
100694 TTAT-ATTA
1 TTATAATTA
100702 TTATAAT
1 TTATAAT
100709 GTTAATTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
7 8 0.24
8 11 0.32
9 7 0.21
10 8 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
TTATAATTA
Found at i:100827 original size:29 final size:29
Alignment explanation
Indices: 100794--100850 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
100784 AATTAACTAA
100794 TTTATTAAAATATTA-ATAATTATTTATTT
1 TTTATTAAAATATTATA-AATTATTTATTT
**
100823 TTTATTATTATATTATAAATTATTTATT
1 TTTATTAAAATATTATAAATTATTTATT
100851 ATCACATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 24 0.96
30 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (29 bp):
TTTATTAAAATATTATAAATTATTTATTT
Found at i:101953 original size:19 final size:19
Alignment explanation
Indices: 101917--101959 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
101907 ATTATTAAAA
* *
101917 TTAATAAGATTAATTTAAT
1 TTAATAAGAATAAATTAAT
*
101936 TTAATAATAATAAATTAAT
1 TTAATAAGAATAAATTAAT
*
101955 ATAAT
1 TTAAT
101960 TTATATTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
TTAATAAGAATAAATTAAT
Found at i:101970 original size:24 final size:25
Alignment explanation
Indices: 101911--101966 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
101901 ATTGTTATTA
* *
101911 TTAAAATTAATAAGATTAATTTAAT
1 TTAATATTAATAAGATTAATATAAT
*
101936 TTAATAATAATAA-ATTAATATAAT
1 TTAATATTAATAAGATTAATATAAT
101960 TT-ATATT
1 TTAATATT
101967 TAATTAATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 4 0.15
24 12 0.44
25 11 0.41
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
TTAATATTAATAAGATTAATATAAT
Found at i:104247 original size:33 final size:33
Alignment explanation
Indices: 104210--104295 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 33
104200 TTTGTTTAAT
*
104210 TTAAATTTAAATTAATTCA-TAAATAAATAAATA
1 TTAAATTTAAATTAATTAATTAAA-AAATAAATA
* * *
104243 TTAAATTTTATTTAATTAATTAAAATATAAATA
1 TTAAATTTAAATTAATTAATTAAAAAATAAATA
* *
104276 TTTAA-TTAAATATATTTAAT
1 TTAAATTTAAAT-TAATTAAT
104296 AACTATTATT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
32 4 0.09
33 35 0.81
34 4 0.09
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (33 bp):
TTAAATTTAAATTAATTAATTAAAAAATAAATA
Found at i:104501 original size:13 final size:14
Alignment explanation
Indices: 104472--104503 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
104462 AATAATTTAA
104472 TAAATTATATAATT
1 TAAATTATATAATT
104486 TAAATTATAT-ATT
1 TAAATTATATAATT
104499 TAAAT
1 TAAAT
104504 CATAAGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAAATTATATAATT
Found at i:104731 original size:19 final size:19
Alignment explanation
Indices: 104684--104732 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
104674 TGAAATATTA
104684 ATTAAATCATTCTATTAAAT
1 ATTAAAT-ATTCTATTAAAT
* *
104704 AGTATATATT-TAATTAAAT
1 ATTAAATATTCT-ATTAAAT
104723 ATTAAATATT
1 ATTAAATATT
104733 ATATAACTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 18 0.75
20 5 0.21
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (19 bp):
ATTAAATATTCTATTAAAT
Found at i:104736 original size:12 final size:12
Alignment explanation
Indices: 104676--104756 Score: 53
Period size: 12 Copynumber: 6.7 Consensus size: 12
104666 AAGTAATTTG
104676 AAATATTA-ATT
1 AAATATTATATT
*
104687 AAATCATTCTATT
1 AAAT-ATTATATT
104700 AAATAGTATATATT
1 AAATA-T-TATATT
* *
104714 TAAT-TAAATATT
1 AAATAT-TATATT
104726 AAATATTATA-T
1 AAATATTATATT
*
104737 AACTATTATA-T
1 AAATATTATATT
104748 AAATTATTA
1 AAA-TATTA
104757 AACCAAATTT
Statistics
Matches: 56, Mismatches: 8, Indels: 11
0.75 0.11 0.15
Matches are distributed among these distances:
11 17 0.30
12 22 0.39
13 9 0.16
14 8 0.14
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (12 bp):
AAATATTATATT
Found at i:105181 original size:11 final size:13
Alignment explanation
Indices: 105172--105204 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
105162 TATTATATTT
105172 ATTATATATTATA
1 ATTATATATTATA
105185 ATTATATA-TATA
1 ATTATATATTATA
*
105197 AATATATA
1 ATTATATA
105205 AATTTAATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTATATATTATA
Found at i:105365 original size:25 final size:24
Alignment explanation
Indices: 105337--105385 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
105327 TCGATCAAAT
*
105337 ATAATTTAATT-TGATATTTTAATTA
1 ATAATTT-ATTATGATA-CTTAATTA
105362 ATAATTTATTATGATACTTAATTA
1 ATAATTTATTATGATACTTAATTA
105386 CAATTCTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (24 bp):
ATAATTTATTATGATACTTAATTA
Found at i:105744 original size:21 final size:24
Alignment explanation
Indices: 105705--105752 Score: 75
Period size: 21 Copynumber: 2.1 Consensus size: 24
105695 TTATAATTAC
105705 TATAAATAAATTAATAATTATATT
1 TATAAATAAATTAATAATTATATT
105729 TATAAAT-AATT-A-AATTATATT
1 TATAAATAAATTAATAATTATATT
105750 TAT
1 TAT
105753 TCATAGGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 12 0.50
22 1 0.04
23 4 0.17
24 7 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TATAAATAAATTAATAATTATATT
Found at i:105821 original size:21 final size:21
Alignment explanation
Indices: 105778--105830 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
105768 TAAATATAGT
*
105778 TTATAATATATATAATTACTTA
1 TTATAATAT-TATAATTAATTA
*
105800 -TATAATATTATTATTATATTA
1 TTATAATATTATAATTA-ATTA
105821 TTATAA-ATTA
1 TTATAATATTA
105831 GATTACTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 7 0.26
21 15 0.56
22 5 0.19
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
TTATAATATTATAATTAATTA
Found at i:105888 original size:21 final size:21
Alignment explanation
Indices: 105860--105901 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
105850 CAATTATTTT
* *
105860 AATTTTAAATTA-ATAAGTAA
1 AATTTTTAATTATATAAATAA
105880 AATTTTTAATTATATAAATAA
1 AATTTTTAATTATATAAATAA
105901 A
1 A
105902 TTAGATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
AATTTTTAATTATATAAATAA
Found at i:106628 original size:92 final size:92
Alignment explanation
Indices: 106461--106630 Score: 232
Period size: 92 Copynumber: 1.8 Consensus size: 92
106451 TTGCATGAAC
* ** * * ** *
106461 AGAACCAATTATTTTATGACAAAACAAAATGTCATAATATTTTGAAATAGATAATTGTTTAGATA
1 AGAAACAATTATTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATAATTTAAATA
*
106526 GTCATAACTATTTCAACTTGATCGATA
66 GACATAACTATTTCAACTTGATCGATA
* *
106553 AGAAACAATTATTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAATAATTTAAATG
1 AGAAACAATTATTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATAATTTAAATA
*
106618 GACATGACTATTT
66 GACATAACTATTT
106631 GAATTGGTTC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
92 66 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (92 bp):
AGAAACAATTATTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATAATTTAAATA
GACATAACTATTTCAACTTGATCGATA
Found at i:107198 original size:16 final size:16
Alignment explanation
Indices: 107163--107201 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
107153 TATTTAATTA
**
107163 TATAATTTTAATATTGC
1 TATAA-TTTAATATAAC
107180 TATAATTTAATATAAC
1 TATAATTTAATATAAC
107196 TATAAT
1 TATAAT
107202 ATATTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.49
Consensus pattern (16 bp):
TATAATTTAATATAAC
Found at i:107561 original size:22 final size:25
Alignment explanation
Indices: 107526--107582 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 25
107516 TTATTAAAAC
* *
107526 TAATAAATATTTAAATAT-TT-T-A
1 TAATATATAATTAAATATATTGTAA
107548 TAATATATAATTAAATATATTGTAA
1 TAATATATAATTAAATATATTGTAA
107573 TAAT-TATAAT
1 TAATATATAAT
107583 ATAATAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 16 0.53
23 2 0.07
24 7 0.23
25 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (25 bp):
TAATATATAATTAAATATATTGTAA
Found at i:107674 original size:26 final size:27
Alignment explanation
Indices: 107623--107684 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 27
107613 TGTATCAAGT
*
107623 TATTAATATAATTTATATTTATTTTAA
1 TATTAATATAATTTATATTTAGTTTAA
*
107650 TATTAA-ATAGTTTATTATTT-GTTTAA
1 TATTAATATAATTTA-TATTTAGTTTAA
*
107676 -AATAATATA
1 TATTAATATA
107685 TATTAAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 4 0.13
26 15 0.50
27 11 0.37
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (27 bp):
TATTAATATAATTTATATTTAGTTTAA
Found at i:107702 original size:17 final size:15
Alignment explanation
Indices: 107672--107703 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
107662 TATTATTTGT
107672 TTAAAATAATATATA
1 TTAAAATAATATATA
107687 TTAAAATAATATATA
1 TTAAAATAATATATA
107702 TT
1 TT
107704 TATTATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAAAATAATATATA
Found at i:107934 original size:21 final size:21
Alignment explanation
Indices: 107908--107947 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
107898 TTTATATTAG
* *
107908 ATTAAATTTATTTAATTATCT
1 ATTAAATTCAGTTAATTATCT
107929 ATTAAATTCAGTTAATTAT
1 ATTAAATTCAGTTAATTAT
107948 ATAATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.53
Consensus pattern (21 bp):
ATTAAATTCAGTTAATTATCT
Found at i:108097 original size:17 final size:17
Alignment explanation
Indices: 108077--108114 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
108067 TATGAATCAT
108077 AATAATT-ATTTATTTTA
1 AATAATTAATTTA-TTTA
108094 AAT-ATTAATTTATTTA
1 AATAATTAATTTATTTA
108110 AATAA
1 AATAA
108115 ATAAATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AATAATTAATTTATTTA
Found at i:108193 original size:13 final size:14
Alignment explanation
Indices: 108168--108215 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
108158 TAATTATATG
108168 AAATTATAATAATT
1 AAATTATAATAATT
108182 AAATTA-AATAATTT
1 AAATTATAATAA-TT
* *
108196 TAATTTTAAT-ATT
1 AAATTATAATAATT
108209 AAATTAT
1 AAATTAT
108216 TAAAATGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
13 12 0.43
14 13 0.46
15 3 0.11
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATTATAATAATT
Found at i:108199 original size:22 final size:22
Alignment explanation
Indices: 108169--108217 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
108159 AATTATATGA
108169 AATTATAATAATTAA-ATTAAAT
1 AATTATAAT-ATTAATATTAAAT
* *
108191 AATTTTAATTTTAATATTAAAT
1 AATTATAATATTAATATTAAAT
*
108213 TATTA
1 AATTA
108218 AAATGATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTATAATATTAATATTAAAT
Found at i:108775 original size:19 final size:19
Alignment explanation
Indices: 108753--108871 Score: 74
Period size: 19 Copynumber: 6.3 Consensus size: 19
108743 ATAATTTCGC
108753 AATTATAATTAATTATAAT
1 AATTATAATTAATTATAAT
* *
108772 AATTATTA-TAATGATTAAT
1 AATTATAATTAATTA-TAAT
108791 -ATATATAATTAGATTAT-AT
1 AAT-TATAATTA-ATTATAAT
108810 ATATTA-AATT-ATTAATAAT
1 A-ATTATAATTAATT-ATAAT
* *
108829 AATTTATTATTATTTAT-AT
1 AA-TTATAATTAATTATAAT
108848 AATT-TAAATTAA-TATTAAT
1 AATTAT-AATTAATTA-TAAT
108867 AATTA
1 AATTA
108872 AATCCTAAAT
Statistics
Matches: 77, Mismatches: 8, Indels: 29
0.68 0.07 0.25
Matches are distributed among these distances:
17 6 0.08
18 17 0.22
19 37 0.48
20 10 0.13
21 7 0.09
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.50
Consensus pattern (19 bp):
AATTATAATTAATTATAAT
Found at i:108781 original size:12 final size:12
Alignment explanation
Indices: 108757--108801 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
108747 TTTCGCAATT
108757 ATAATTAATTATA
1 ATAATT-ATTATA
108770 ATAATTATTATA
1 ATAATTATTATA
* *
108782 ATGATTAATATA
1 ATAATTATTATA
108794 TATAATTA
1 -ATAATTA
108802 GATTATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 16 0.57
13 12 0.43
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (12 bp):
ATAATTATTATA
Found at i:108972 original size:20 final size:20
Alignment explanation
Indices: 108937--108983 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
108927 TAAAAATAAG
108937 TAAAAAT-ATAATAATTAGT
1 TAAAAATAATAATAATTAGT
*
108956 TAAAAATAAGTAA-AATTATT
1 TAAAAATAA-TAATAATTAGT
108976 TAAAAATA
1 TAAAAATA
108984 TTCATTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 7 0.28
20 15 0.60
21 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (20 bp):
TAAAAATAATAATAATTAGT
Found at i:109051 original size:16 final size:15
Alignment explanation
Indices: 109024--109054 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
109014 AAATAAGTAA
109024 AATTATTTATTTATC
1 AATTATTTATTTATC
109039 AATTATGTTATTTATC
1 AATTAT-TTATTTATC
109055 TAAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (15 bp):
AATTATTTATTTATC
Found at i:109089 original size:10 final size:10
Alignment explanation
Indices: 109076--109100 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
109066 TAATTATTTA
109076 TATATATAAT
1 TATATATAAT
109086 TATATATAAT
1 TATATATAAT
109096 TATAT
1 TATAT
109101 TATTTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TATATATAAT
Found at i:109121 original size:27 final size:26
Alignment explanation
Indices: 109039--109121 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 26
109029 TTTATTTATC
* * *
109039 AATTATGTTATTTATCTAAATATATTAT
1 AATTAT-TTATTTATATAATTA-ATAAT
*
109067 AATTATTTATATATATAATT-ATATAT
1 AATTATTTATTTATATAATTAATA-AT
*
109093 AATTATATTATTTATTTAATTAATAAT
1 AATTAT-TTATTTATATAATTAATAAT
109120 AA
1 AA
109122 CATATTGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
25 2 0.04
26 8 0.17
27 27 0.59
28 9 0.20
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (26 bp):
AATTATTTATTTATATAATTAATAAT
Found at i:109492 original size:16 final size:18
Alignment explanation
Indices: 109471--109505 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
109461 GTTAATTTAC
109471 AATAATA-TTAT-ATTGT
1 AATAATATTTATAATTGT
109487 AATAATATTTATAATTGT
1 AATAATATTTATAATTGT
109505 A
1 A
109506 TACAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 4 0.24
18 6 0.35
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (18 bp):
AATAATATTTATAATTGT
Found at i:109983 original size:25 final size:24
Alignment explanation
Indices: 109942--109989 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
109932 TAATAGCATA
109942 ATAATAATAAGAAAATTTAATATT
1 ATAATAATAAGAAAATTTAATATT
*
109966 ATAATATATAA-AATAATTTTATAT
1 ATAATA-ATAAGAA-AATTTAATAT
109990 AAAACAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
ATAATAATAAGAAAATTTAATATT
Found at i:110038 original size:14 final size:14
Alignment explanation
Indices: 110015--110064 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
110005 TATATATTTT
110015 TAAT-TAATTATTA
1 TAATATAATTATTA
*
110028 TAA-ATATATTATAA
1 TAATATA-ATTATTA
*
110042 TAATATAATTATTT
1 TAATATAATTATTA
110056 TATATATAA
1 TA-ATATAA
110065 ATAATTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 5 0.17
14 16 0.53
15 9 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATAATTATTA
Found at i:110048 original size:19 final size:20
Alignment explanation
Indices: 110026--110068 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
110016 AATTAATTAT
110026 TATAAATATATTATA-ATAA
1 TATAAATATATTATATATAA
* *
110045 TATAATTATTTTATATATAA
1 TATAAATATATTATATATAA
110065 -ATAA
1 TATAA
110069 TTTATATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TATAAATATATTATATATAA
Found at i:110258 original size:29 final size:31
Alignment explanation
Indices: 110225--110294 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
110215 TAGTAATTAG
* * *
110225 TAATTTATTTGATA-ATTTATATATATTATA
1 TAATTTATTTGATATAATTATAAATAATATA
*
110255 -AATTTATATTTATATAATTATAAATAATATA
1 TAATTTAT-TTGATATAATTATAAATAATATA
110286 TAATTTATT
1 TAATTTATT
110295 AATTTTTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
29 7 0.21
30 5 0.15
31 14 0.42
32 7 0.21
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (31 bp):
TAATTTATTTGATATAATTATAAATAATATA
Found at i:110260 original size:17 final size:16
Alignment explanation
Indices: 110238--110293 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
110228 TTTATTTGAT
110238 AATTTATATATATTATA
1 AATTTATATATA-TATA
*
110255 AATTTATATTTATAT-
1 AATTTATATATATATA
*
110270 AA-TTATAAATAATATA
1 AATTTATATAT-ATATA
110286 TAATTTAT
1 -AATTTAT
110294 TAATTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
16 3 0.09
17 13 0.41
18 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AATTTATATATATATA
Found at i:110285 original size:23 final size:23
Alignment explanation
Indices: 110239--110286 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
110229 TTATTTGATA
*
110239 ATTTATATATATTATAAATTTAT
1 ATTTATATATATTATAAATATAT
110262 ATTTATATA-ATTATAAATAATAT
1 ATTTATATATATTATAAAT-ATAT
110285 AT
1 AT
110287 AATTTATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTTATATATATTATAAATATAT
Found at i:110287 original size:25 final size:23
Alignment explanation
Indices: 110231--110298 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 23
110221 TTAGTAATTT
110231 ATTTGATAATTTATATATATTATAA
1 ATTT-ATAATTTATATA-ATTATAA
110256 ATTTAT-ATTTATATAATTATAA
1 ATTTATAATTTATATAATTATAA
110278 ATAATATATAATTTAT-TAATT
1 AT--T-TATAATTTATATAATT
110299 TTTATTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
22 9 0.23
23 9 0.23
24 3 0.08
25 12 0.31
26 6 0.15
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (23 bp):
ATTTATAATTTATATAATTATAA
Found at i:110994 original size:19 final size:20
Alignment explanation
Indices: 110972--111012 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
110962 TAAAAAAGTA
* *
110972 ATAATTAATTAATTAT-ATT
1 ATAATTAAATAAATATAATT
110991 ATAATTAAATAAATATAATT
1 ATAATTAAATAAATATAATT
111011 AT
1 AT
111013 TTATTAATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATAATTAAATAAATATAATT
Found at i:111072 original size:22 final size:22
Alignment explanation
Indices: 111030--111074 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
111020 TCTTATTTAT
* *
111030 TTATTAATTTAATTCATAATAA
1 TTATTAATTAAATTCAGAATAA
111052 TTATTAATATAAATT-AGAATAA
1 TTATTAAT-TAAATTCAGAATAA
111074 T
1 T
111075 ATTCAAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (22 bp):
TTATTAATTAAATTCAGAATAA
Found at i:111196 original size:23 final size:22
Alignment explanation
Indices: 111170--111218 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
111160 TTTATAATTA
*
111170 ATTAATT-GTAATTAATATATAAT
1 ATTAATTAGT-ATTAAT-TAAAAT
111193 ATTAATTAGTATTAATTAAAAT
1 ATTAATTAGTATTAATTAAAAT
111215 ATTA
1 ATTA
111219 TTTTAATGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 9 0.38
23 13 0.54
24 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
ATTAATTAGTATTAATTAAAAT
Found at i:111232 original size:27 final size:27
Alignment explanation
Indices: 111178--111232 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
111168 TAATTAATTG
* *
111178 TAATTAATATATAATATTAATTAGTAT
1 TAATTAAAATATAATATTAATGAGTAT
* * *
111205 TAATTAAAATATTATTTTAATGATTAT
1 TAATTAAAATATAATATTAATGAGTAT
111232 T
1 T
111233 TAATAACTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (27 bp):
TAATTAAAATATAATATTAATGAGTAT
Found at i:111671 original size:21 final size:20
Alignment explanation
Indices: 111635--111685 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
111625 ACTTAACTAT
*
111635 TTATATATAACTTAATGATA
1 TTATATATAACTTAATAATA
111655 TTATATA-ATACTATAATAATA
1 TTATATATA-ACT-TAATAATA
*
111676 TTAAATATAA
1 TTATATATAA
111686 GAGATTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 1 0.04
20 10 0.38
21 14 0.54
22 1 0.04
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (20 bp):
TTATATATAACTTAATAATA
Found at i:111844 original size:17 final size:17
Alignment explanation
Indices: 111822--111856 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
111812 ATTATTTTTG
*
111822 TTATAATTTTTTATAAT
1 TTATAATTTTTAATAAT
111839 TTATAATTTTTAATAAT
1 TTATAATTTTTAATAAT
111856 T
1 T
111857 AATTAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TTATAATTTTTAATAAT
Found at i:112163 original size:73 final size:67
Alignment explanation
Indices: 112049--112196 Score: 149
Period size: 73 Copynumber: 2.1 Consensus size: 67
112039 ACATAATATT
* *
112049 TATATATTATTTTATAATAAATCAAATATCTTTATATATATAAAGATTATTTAATTAAATAAGTT
1 TATATATTATTTTATAATAAATAAAATATCTTTATATATAT-AAGATAATTT-ATTAAATAA-TT
112114 AATAAA
63 -ATAAA
* * *
112120 TATATATTATATTTAATTATGAATAAAATAT-TATTAT-TCATATAATATAATTTATTAAATAAT
1 TATATATTAT-TTT-ATAATAAATAAAATATCT-TTATAT-ATATAAGATAATTTATTAAATAAT
*
112183 TATTAA
62 TATAAA
112189 TATA-ATTA
1 TATATATTA
112197 ATAACATATA
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
68 4 0.06
69 8 0.12
70 2 0.03
71 19 0.28
72 13 0.19
73 21 0.31
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (67 bp):
TATATATTATTTTATAATAAATAAAATATCTTTATATATATAAGATAATTTATTAAATAATTATA
AA
Found at i:112196 original size:12 final size:12
Alignment explanation
Indices: 112162--112196 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
112152 ATTATTCATA
112162 TAATATAATTTAT
1 TAATATAA-TTAT
112175 TAA-ATAATTAT
1 TAATATAATTAT
112186 TAATATAATTA
1 TAATATAATTA
112197 ATAACATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 11 0.52
13 3 0.14
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATATAATTAT
Found at i:112334 original size:16 final size:16
Alignment explanation
Indices: 112313--112343 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
112303 TAATATAATT
112313 ATACAATTATACTATA
1 ATACAATTATACTATA
112329 ATACAATTATACTAT
1 ATACAATTATACTAT
112344 TATTAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (16 bp):
ATACAATTATACTATA
Found at i:112336 original size:24 final size:24
Alignment explanation
Indices: 112301--112346 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
112291 TTCTTATATT
*
112301 TATAATATAATTATACAATTATAC
1 TATAATACAATTATACAATTATAC
*
112325 TATAATACAATTATACTATTAT
1 TATAATACAATTATACAATTAT
112347 TAGTAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (24 bp):
TATAATACAATTATACAATTATAC
Found at i:112369 original size:14 final size:13
Alignment explanation
Indices: 112341--112380 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 13
112331 ACAATTATAC
*
112341 TATTATTAGTAAT
1 TATTATTATTAAT
112354 TA--ATTATTAAT
1 TATTATTATTAAT
112365 TATTATTA-TAAT
1 TATTATTATTAAT
112377 TATT
1 TATT
112381 TATTTATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
11 10 0.42
12 8 0.33
13 6 0.25
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (13 bp):
TATTATTATTAAT
Found at i:112378 original size:19 final size:18
Alignment explanation
Indices: 112354--112398 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
112344 TATTAGTAAT
112354 TAATTATTAATTATTATTA
1 TAATTATTAATTATT-TTA
*
112373 TAATTATTTATTTATTTTA
1 TAATTA-TTAATTATTTTA
112392 TAATTAT
1 TAATTAT
112399 AAATAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 1 0.04
19 15 0.62
20 8 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TAATTATTAATTATTTTA
Found at i:113459 original size:16 final size:15
Alignment explanation
Indices: 113428--113487 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 15
113418 TTATTATTAT
113428 TATTTTATTAATTAAA
1 TATTTTATTAA-TAAA
113444 TATTATTATTAATAAA
1 TATT-TTATTAATAAA
* *
113460 -ATAATTACTAAATAAA
1 TAT-TTTA-TTAATAAA
113476 TATTTTATTAAT
1 TATTTTATTAAT
113488 TATTTTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
15 9 0.25
16 18 0.50
17 9 0.25
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTTTATTAATAAA
Found at i:113624 original size:17 final size:17
Alignment explanation
Indices: 113608--113651 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
113598 ACTAAAAATA
113608 ATTAAT-ATTTTATAAT
1 ATTAATAATTTTATAAT
*
113624 ATTAGTAATTTTATAAT
1 ATTAATAATTTTATAAT
* *
113641 GTTAGTAATTT
1 ATTAATAATTT
113652 AAATAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.55
Consensus pattern (17 bp):
ATTAATAATTTTATAAT
Found at i:113966 original size:15 final size:16
Alignment explanation
Indices: 113941--113972 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
113931 ATTAATTGTC
113941 ATATTATTTATTAAAA
1 ATATTATTTATTAAAA
113957 ATATTA-TTATTAAAA
1 ATATTATTTATTAAAA
113972 A
1 A
113973 ACATTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATTATTTATTAAAA
Found at i:113973 original size:16 final size:16
Alignment explanation
Indices: 113941--113984 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
113931 ATTAATTGTC
113941 ATATTATTTATT-AAAA
1 ATATTA-TTATTAAAAA
113957 ATATTATTATTAAAAA
1 ATATTATTATTAAAAA
*
113973 ACATTATT-TTAA
1 ATATTATTATTAA
113985 TTATAAGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 9 0.35
16 17 0.65
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTATTATTAAAAA
Found at i:114683 original size:18 final size:19
Alignment explanation
Indices: 114637--114685 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
114627 CATTTAAAGT
114637 TATTAATTAT-AT-TTTAA
1 TATTAATTATAATATTTAA
114654 TATTAATTATAATATTTAA
1 TATTAATTATAATATTTAA
*
114673 TA-TATTTATAATA
1 TATTAATTATAATA
114686 ATCAGTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 10 0.34
18 12 0.41
19 7 0.24
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTAATTATAATATTTAA
Found at i:114686 original size:21 final size:20
Alignment explanation
Indices: 114640--114687 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
114630 TTAAAGTTAT
* *
114640 TAATTATATTTTAATATTAA
1 TAATAATATTTAAATATTAA
* *
114660 TTATAATATTTAATATATTTA
1 TAATAATATTTAA-ATATTAA
114681 TAATAAT
1 TAATAAT
114688 CAGTTATTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TAATAATATTTAAATATTAA
Found at i:116458 original size:15 final size:17
Alignment explanation
Indices: 116440--116480 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
116430 AATTACATTG
116440 TATATAAT-AATA-GTT
1 TATATAATAAATATGTT
*
116455 TATATATTAAATATTGTT
1 TATATAATAAATA-TGTT
116473 TATATAAT
1 TATATAAT
116481 GTTAACAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 7 0.33
16 4 0.19
18 10 0.48
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TATATAATAAATATGTT
Found at i:116779 original size:18 final size:18
Alignment explanation
Indices: 116739--116797 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
116729 AATAGTATTA
*
116739 ATTAATATATTTCTAA-T
1 ATTAATATATTTGTAAGT
*
116756 AGTTAATACATTTGTAAGT
1 A-TTAATATATTTGTAAGT
116775 ATTAAATTATATTTGTAAGT
1 ATT-AA-TATATTTGTAAGT
116795 ATT
1 ATT
116798 TATTATATAC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 1 0.03
18 15 0.43
19 4 0.11
20 15 0.43
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.49
Consensus pattern (18 bp):
ATTAATATATTTGTAAGT
Found at i:117519 original size:180 final size:182
Alignment explanation
Indices: 117178--117608 Score: 553
Period size: 181 Copynumber: 2.4 Consensus size: 182
117168 TAATTAATTA
* * * * * * *
117178 AAAAAATAAATCTATTTACCGATCAAGTTTAAATAATTATAACAATTTGAACAATTATTTATTTA
1 AAAAAATAATTCTATTTACTGAACAAATTCAAATAATTATAACTATTTGAACAATTATCTATTTA
*
117243 AAATCGTTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAAA
66 AAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAAA
* *
117308 ATAAAATAATATTAATTTTTTAATATTTCAAAAATTAATAAGCAAGAG-TTT
131 ATAAAATAATAGTAATTTATTAATATTTCAAAAATTAATAAGCAAGAGATTT
* *
117359 AAAAAATTAATT-TGTTTACTGAACAAATTCAAATAGTTATAACTATTTGAACAATTATCTATTT
1 AAAAAA-TAATTCTATTTACTGAACAAATTCAAATAATTATAACTATTTGAACAATTATCTATTT
* * * * * *
117423 AAAATTATTATGACCTTTTGTTTTGTC-ATAAAACAATTGTTTCAGTTCATACAAGCTTATTCGA
65 AAAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAA
** *
117487 AATAAAATAATAGTAATTTATTAATATTTCAAAAATTAATAATTAAGTGATTT
130 AATAAAATAATAGTAATTTATTAATATTTCAAAAATTAATAAGCAAGAGATTT
* * ** * ** * * *
117540 AAAAAATGATTCTATTTATTGAATTAGTTCAAATAATTATGGCTATTTCAACAATTATGTATTTG
1 AAAAAATAATTCTATTTACTGAACAAATTCAAATAATTATAACTATTTGAACAATTATCTATTTA
117605 AAAT
66 AAAT
117609 ATATATAATA
Statistics
Matches: 214, Mismatches: 33, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
180 81 0.38
181 129 0.60
182 4 0.02
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (182 bp):
AAAAAATAATTCTATTTACTGAACAAATTCAAATAATTATAACTATTTGAACAATTATCTATTTA
AAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAAA
ATAAAATAATAGTAATTTATTAATATTTCAAAAATTAATAAGCAAGAGATTT
Found at i:118054 original size:6 final size:6
Alignment explanation
Indices: 118043--118084 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
118033 TTGTTATCTA
* *
118043 ATTAAT ATTAAT ATTAAT ATTTAT A-TAAT -TTAAT ATTTAT AT
1 ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT AT
118085 CATCTATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
5 7 0.23
6 24 0.77
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (6 bp):
ATTAAT
Found at i:118075 original size:16 final size:17
Alignment explanation
Indices: 118051--118084 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
118041 TAATTAATAT
118051 TAATATTAATATTTATA
1 TAATATTAATATTTATA
118068 TAAT-TTAATATTTATA
1 TAATATTAATATTTATA
118084 T
1 T
118085 CATCTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TAATATTAATATTTATA
Found at i:118426 original size:35 final size:35
Alignment explanation
Indices: 118387--118454 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
118377 TTAGAAACTA
*
118387 TATTACAAATAC-TATATATTTAAATAATTAATAAT
1 TATTACAAAT-CTTATATATATAAATAATTAATAAT
* *
118422 TATTACAAATCTTATATATATAATTTATTAATA
1 TATTACAAATCTTATATATATAAATAATTAATA
118455 TATTCTCATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 1 0.03
35 28 0.97
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (35 bp):
TATTACAAATCTTATATATATAAATAATTAATAAT
Found at i:118663 original size:25 final size:25
Alignment explanation
Indices: 118641--118689 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
118631 ATAATTATCT
*
118641 AATTAGTGTAATTATATAGTTATAA
1 AATTAGTATAATTATATAGTTATAA
*
118666 AATTATTATAATT-TATAGTTATAA
1 AATTAGTATAATTATATAGTTATAA
118690 TAAATATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (25 bp):
AATTAGTATAATTATATAGTTATAA
Found at i:118701 original size:24 final size:25
Alignment explanation
Indices: 118649--118713 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
118639 CTAATTAGTG
*
118649 TAATTATATAGTTATAA-AATTATTA
1 TAATT-TATAGTTATAATAAATATTA
118674 TAATTTATAGTTATAATAAATATT-
1 TAATTTATAGTTATAATAAATATTA
*
118698 TAA--TATATTTATAATA
1 TAATTTATAGTTATAATA
118714 TAACAAACCT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
22 12 0.32
24 14 0.38
25 11 0.30
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (25 bp):
TAATTTATAGTTATAATAAATATTA
Found at i:118765 original size:12 final size:13
Alignment explanation
Indices: 118736--118773 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
118726 AATTATTGTT
118736 TTATAATTAAATAA
1 TTATAA-TAAATAA
118750 TTATAATAAA-AA
1 TTATAATAAATAA
*
118762 TTATTATAAATA
1 TTATAATAAATA
118774 CATATTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 11 0.50
13 5 0.23
14 6 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
TTATAATAAATAA
Found at i:119042 original size:53 final size:55
Alignment explanation
Indices: 118984--119090 Score: 146
Period size: 53 Copynumber: 2.0 Consensus size: 55
118974 ATAGTAAGAT
*** * *
118984 ATTTAAAAAATAAATGTGTTTGCTGAACCAGTTTAAATAGTTAA-ACT-TATAAG
1 ATTTAAAAAATAAATCCATTTGCTAAACCAGTTCAAATAGTTAAGACTATATAAG
*
119037 ATTTAAAAAATAAATCCATTTGCTAAATCAGTTCAAATAGTTAAGACTATATAA
1 ATTTAAAAAATAAATCCATTTGCTAAACCAGTTCAAATAGTTAAGACTATATAA
119091 ACAATTATCT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 38 0.83
54 3 0.07
55 5 0.11
ACGTcount: A:0.46, C:0.09, G:0.10, T:0.35
Consensus pattern (55 bp):
ATTTAAAAAATAAATCCATTTGCTAAACCAGTTCAAATAGTTAAGACTATATAAG
Found at i:119437 original size:36 final size:36
Alignment explanation
Indices: 119397--119468 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
119387 TAAGATAACT
* *
119397 TTAATCTATTAACAATTCCTTTAAATATTTATTTTA
1 TTAATCTATTAACAATTACTTTAAATATTGATTTTA
119433 TTAATCTATTAACAATTACTTTAAATATTGATTTTA
1 TTAATCTATTAACAATTACTTTAAATATTGATTTTA
119469 CTTTATTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.38, C:0.10, G:0.01, T:0.51
Consensus pattern (36 bp):
TTAATCTATTAACAATTACTTTAAATATTGATTTTA
Found at i:119505 original size:29 final size:28
Alignment explanation
Indices: 119472--119540 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 28
119462 GATTTTACTT
*
119472 TATTAATTTTAAATCTATTTATTAATTTTA
1 TATTAA-TTTAAATCTA-TTATTAATATTA
119502 -ATTAA-TT-AATCTATTATTAATATTA
1 TATTAATTTAAATCTATTATTAATATTA
119527 TATTATATATTAAA
1 TATTA-AT-TTAAA
119541 AAAATTATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
25 11 0.33
26 10 0.30
27 3 0.09
29 7 0.21
30 2 0.06
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (28 bp):
TATTAATTTAAATCTATTATTAATATTA
Found at i:119570 original size:19 final size:18
Alignment explanation
Indices: 119546--119594 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
119536 TTAAAAAAAT
*
119546 TATAATAAATTTATAATTA
1 TATAATAAATAT-TAATTA
119565 TATAATAAATATTAATTA
1 TATAATAAATATTAATTA
119583 T-T--TAAATATTAA
1 TATAATAAATATTAA
119595 AATAAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 10 0.34
17 1 0.03
18 7 0.24
19 11 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TATAATAAATATTAATTA
Found at i:119628 original size:19 final size:18
Alignment explanation
Indices: 119601--119636 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
119591 TTAAAATAAA
*
119601 TATTTATAATATATATCAT
1 TATTAATAATAT-TATCAT
119620 TATTAATAATATTATCA
1 TATTAATAATATTATCA
119637 AAACTATTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTAATAATATTATCAT
Found at i:119631 original size:55 final size:56
Alignment explanation
Indices: 119523--119633 Score: 131
Period size: 55 Copynumber: 2.0 Consensus size: 56
119513 TATTATTAAT
* *
119523 ATTATATTATATATTAAAAAAATTATAATAAATTTATAATTATATAATAAATATTA
1 ATTATATTAAATATTAAAAAAATTATAATAAATATATAATTATATAATAAATATTA
* *
119579 ATTAT-TTAAATATTAAAATAAA-TATTTATAATATATATCATTAT-TAAT-AATATTA
1 ATTATATTAAATATTAAAA-AAATTA-TAATAA-ATATATAATTATATAATAAATATTA
119634 TCAAAACTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
55 21 0.44
56 17 0.35
57 10 0.21
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (56 bp):
ATTATATTAAATATTAAAAAAATTATAATAAATATATAATTATATAATAAATATTA
Found at i:119827 original size:21 final size:22
Alignment explanation
Indices: 119801--119849 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
119791 AATTAATAAG
119801 AAATATATATTA-AAAATAAAT
1 AAATATATATTATAAAATAAAT
* * *
119822 AAATAT-TTTTATAATATTAAT
1 AAATATATATTATAAAATAAAT
119843 AAATATA
1 AAATATA
119850 ACTAATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAATATATATTATAAAATAAAT
Found at i:120797 original size:19 final size:20
Alignment explanation
Indices: 120773--120815 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
120763 AATTAAATAT
120773 AAATAATTGTTAAT-ATTTA
1 AAATAATTGTTAATAATTTA
*
120792 AAATAATTGTTATTAATTTA
1 AAATAATTGTTAATAATTTA
120812 AAAT
1 AAAT
120816 GCTATTTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
AAATAATTGTTAATAATTTA
Found at i:120858 original size:22 final size:21
Alignment explanation
Indices: 120773--120858 Score: 65
Period size: 19 Copynumber: 4.1 Consensus size: 21
120763 AATTAAATAT
120773 AAAT-AATTG-TTAATATTTA
1 AAATGAATTGATTAATATTTA
*
120792 AAAT-AATTG-TTATTAATTTA
1 AAATGAATTGATTAAT-ATTTA
* *
120812 AAATGCTATTTCTATTAA-ATTTA
1 AAATG--AATT-GATTAATATTTA
120835 AAATGAATTAGATTAATATTTA
1 AAATGAATT-GATTAATATTTA
120857 AA
1 AA
120859 GATTAACCAT
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
19 13 0.25
20 9 0.17
21 8 0.15
22 7 0.13
23 13 0.25
25 3 0.06
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (21 bp):
AAATGAATTGATTAATATTTA
Found at i:120956 original size:23 final size:25
Alignment explanation
Indices: 120908--120957 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
120898 TTAATTAAAA
*
120908 TATAAATATTTAATTAAATTATTAT
1 TATAAATACTTAATTAAATTATTAT
*
120933 TATAAATACTT-A-TAATTTATTAT
1 TATAAATACTTAATTAAATTATTAT
120956 TA
1 TA
120958 ATTATCTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 12 0.52
24 1 0.04
25 10 0.43
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TATAAATACTTAATTAAATTATTAT
Found at i:120976 original size:26 final size:26
Alignment explanation
Indices: 120947--121013 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
120937 AATACTTATA
120947 ATTTATTATTAATTATCTGAA-TATTG
1 ATTT-TTATTAATTATCTGAATTATTG
* * * *
120973 ATTTTAATTTAAATATTTTAATTATTG
1 ATTTTTA-TTAATTATCTGAATTATTG
121000 ATTTTTATTAATTA
1 ATTTTTATTAATTA
121014 ATAGATATCT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.06
26 20 0.61
27 11 0.33
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.58
Consensus pattern (26 bp):
ATTTTTATTAATTATCTGAATTATTG
Found at i:120978 original size:27 final size:29
Alignment explanation
Indices: 120948--121015 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 29
120938 ATACTTATAA
120948 TTTATTATTAATTATCTGAA-TATTGA-T
1 TTTATTATTAATTATCTGAATTATTGATT
* * * *
120975 TTTAAT-TTAAATATTTTAATTATTGATT
1 TTTATTATTAATTATCTGAATTATTGATT
121003 TTTATTAATTAAT
1 TTTATT-ATTAAT
121016 AGATATCTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 10 0.32
27 11 0.35
28 6 0.19
30 4 0.13
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (29 bp):
TTTATTATTAATTATCTGAATTATTGATT
Found at i:121896 original size:157 final size:156
Alignment explanation
Indices: 121732--122028 Score: 434
Period size: 157 Copynumber: 1.9 Consensus size: 156
121722 TAAATCACTT
* **
121732 ATTAATTTTTGAAATATTAATAAATTTTTATTATTTTATTTCGAATAAGATTGTATGAACTGAAA
1 ATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTCGAATAAGATTGTATGAACTGAAA
* ** * *
121797 CAATTGTTTTATGACAAAACAAAAGGTCATGATGATTTTAAATAGATAGTTGTTCAAAT-AGTCA
66 CAATT-TTTTATGACAAAACAAAAGGTCATAACAATTTTAAATAAATAATTGTTCAAATGA-TCA
121861 TAACTATTTGAATTTATTCAGTAAACAA
129 TAACTATTTGAATTTATTCAGTAAACAA
* * * * *
121889 ATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTGGATAAGCTTTTATGAATTGAAA
1 ATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTCGAATAAGATTGTATGAACTGAAA
* *
121954 CAATTTTTTTTGTCAAAACAAAAGGTCATAACAATTTTAAATAAATAATTGTTCAAATGATCATA
66 CAATTTTTTATGACAAAACAAAAGGTCATAACAATTTTAAATAAATAATTGTTCAAATGATCATA
122019 ACTATTTGAA
131 ACTATTTGAA
122029 CTTGATCGAT
Statistics
Matches: 124, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
156 61 0.49
157 63 0.51
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (156 bp):
ATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTCGAATAAGATTGTATGAACTGAAA
CAATTTTTTATGACAAAACAAAAGGTCATAACAATTTTAAATAAATAATTGTTCAAATGATCATA
ACTATTTGAATTTATTCAGTAAACAA
Found at i:122294 original size:22 final size:19
Alignment explanation
Indices: 122268--122310 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 19
122258 AATTATCAAA
122268 TATTAAAATAGATAATAATTAT
1 TATTAAAATA-AT--TAATTAT
*
122290 TATTAATATAATTAATTAT
1 TATTAAAATAATTAATTAT
122309 TA
1 TA
122311 ACTATTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 9 0.45
21 2 0.10
22 9 0.45
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
TATTAAAATAATTAATTAT
Found at i:122339 original size:19 final size:18
Alignment explanation
Indices: 122287--122339 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 18
122277 AGATAATAAT
122287 TATTATTAA-TATAATTA
1 TATTATTAACTATAATTA
122304 -ATTATTAACTAT--TTA
1 TATTATTAACTATAATTA
122319 TATTATTAACTATAATGTA
1 TATTATTAACTATAAT-TA
122338 TA
1 TA
122340 AGATATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 3 0.10
16 20 0.65
17 3 0.10
18 1 0.03
19 4 0.13
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (18 bp):
TATTATTAACTATAATTA
Found at i:122448 original size:14 final size:13
Alignment explanation
Indices: 122419--122450 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
122409 TTTAATATAT
122419 TAATTTAATTTTA
1 TAATTTAATTTTA
122432 TAATTTAATTATTA
1 TAATTTAATT-TTA
122446 TAATT
1 TAATT
122451 AAAGATAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TAATTTAATTTTA
Found at i:123400 original size:24 final size:21
Alignment explanation
Indices: 123373--123419 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
123363 ATATAAATTC
123373 TTAATAATAACTATATTATTATAA
1 TTAATAATAA-TA-A-TATTATAA
*
123397 TTAATTATAATAATATTATAA
1 TTAATAATAATAATATTATAA
123418 TT
1 TT
123420 TTAATTGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 10 0.45
22 1 0.05
23 2 0.09
24 9 0.41
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAATAATAATAATATTATAA
Found at i:123467 original size:19 final size:18
Alignment explanation
Indices: 123443--123496 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 18
123433 AATTTTTAGT
123443 TAAATAAAATTAGATATTC
1 TAAATAAAATTA-ATATTC
123462 TAAATAAAA-TAATA--C
1 TAAATAAAATTAATATTC
123477 T-AAT-AAATTAATATTC
1 TAAATAAAATTAATATTC
123493 TAAA
1 TAAA
123497 AATTAATAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
13 3 0.10
14 8 0.26
15 2 0.06
16 2 0.06
17 5 0.16
18 2 0.06
19 9 0.29
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (18 bp):
TAAATAAAATTAATATTC
Found at i:123501 original size:15 final size:15
Alignment explanation
Indices: 123448--123504 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
123438 TTAGTTAAAT
123448 AAAATTAGATATTCTA
1 AAAATTA-ATATTCTA
*
123464 AATAA--AATAATACTA
1 AA-AATTAAT-ATTCTA
123479 ATAAATTAATATTCTA
1 A-AAATTAATATTCTA
123495 AAAATTAATA
1 AAAATTAATA
123505 AGTTGGAGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
14 2 0.06
15 18 0.53
16 9 0.26
17 5 0.15
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (15 bp):
AAAATTAATATTCTA
Found at i:124072 original size:181 final size:181
Alignment explanation
Indices: 123722--124160 Score: 474
Period size: 181 Copynumber: 2.4 Consensus size: 181
123712 TGAACACGTT
* * * * *
123722 CAAATAGTTATGACCCTTTGTTTTGTCATAAACCAATTGTTTCTATTCATGCAAATGTATTCAAA
1 CAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATGCAAATTTATTTAGA
** * *
123787 ATAAAAATAATACTAATTTCTTAATATTCCAAAAATTAATGAATAAAAAATTTAAAAAATAAATC
66 AT-AAAATAATACTAATTGATTAATACTCCAAAAATTAATGAATAAAAAATTTAAAAAATAAATA
* * **
123852 TGTTTACCAAGTTAGTTTAAATCATCATGATTGTTTGAACAATTATTTATTC
130 TGTTTACCAAGTAAGTTCAAATCATCATGATCATTTGAACAATTATTTATTC
* * * * *
123904 CAAATAGGTATGATCTTTTGTTTTGTCCTAAAACAATTGTTTCTATTCATAG-AAGTTTATTTGG
1 CAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT-GCAAATTTATTTAG
* * * * *
123968 AATAAAATAATACTAATTGATTAATACTCTAAAAATTAGT-AGGTAAGAGATTTAAAAAATAAAT
65 AATAAAATAATACTAATTGATTAATACTCCAAAAATTAATGA-ATAAAAAATTTAAAAAATAAAT
** * * *
124032 ATGTTTGTCGA-TCAAGTTCAAAT-AGTCATG-TCCATTTGAACAATTGTTTATTT
129 ATGTTTACCAAGT-AAGTTCAAATCA-TCATGAT-CATTTGAACAATTATTTATTC
* * * * * * *
124085 TAAATTGTTATGACCTTTTATTTCGTCATAAAACAATTGTTTCAATTCATGTAAAATTATTTAGA
1 CAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATGCAAATTTATTTAGA
124150 ATAAAATAATA
66 ATAAAATAATA
124161 TTGATCTATT
Statistics
Matches: 212, Mismatches: 39, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
180 5 0.02
181 151 0.71
182 55 0.26
183 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (181 bp):
CAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATGCAAATTTATTTAGA
ATAAAATAATACTAATTGATTAATACTCCAAAAATTAATGAATAAAAAATTTAAAAAATAAATAT
GTTTACCAAGTAAGTTCAAATCATCATGATCATTTGAACAATTATTTATTC
Found at i:124963 original size:181 final size:181
Alignment explanation
Indices: 124412--125206 Score: 801
Period size: 180 Copynumber: 4.4 Consensus size: 181
124402 GTTTTGCCAC
* * * **
124412 AAAAC-ATATGTTTCTATTCATACAAGTTTATTCGAAATAAAATAATACTAATCAATTAATA-TT
1 AAAACAAT-TGTTTCTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT
*** * * * * *
124475 CTAAAAATTAATAAGTTGGAGATTTAAAAAAAAAATTGTTTACCAAAC-AACTTTAAATAGTCAT
65 C-AAAAATTAATAAGTAAAAAATTTAAAAAATAAATTATTTACTAAACTAACTTCAAATAGTCAT
* * *
124539 GTCCATTTGAACTATTATCTATTTCAAATTGTTATGACATTTTGTTTTGTCCT
129 GTCCATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCCT
* * *
124592 AAAATAATTGTTTCTATTCAAACAAGCTTATTCTG-AATAAAATAATA-TAAATTTATTAATATT
1 AAAACAATTGTTTCTGTTCATACAAGCTTATT-TGAAATAAAATAATACT-AATTTATTAATATT
* * *** * *
124655 TCAAAAATTAATAAGT-AAAAATTTAAAAAATAAATATGTTTTCTAAA-TTTGTACAAATAGTTA
64 TCAAAAATTAATAAGTAAAAAATTTAAAAAATAAAT-TATTTACTAAACTAACTTCAAATAGTCA
* * * *
124718 TGACTC-TTTGAACAATTATCTATTTCAAATAGCTATGACCCTTTGTTTTGTCGT
128 TGTC-CATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCCT
* * * *
124772 CAACCAATTGTTTTTGTTCATACAAGCATATTTGAAATAAAATAATACTAATTTATTAATATTTC
1 AAAACAATTGTTTCTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC
* * * *
124837 AAAAATTAATAAGTAAAAAATTTAAAAAATAAATCTATTTACTGAGCTAA-TTCAAATCGTTATG
66 AAAAATTAATAAGTAAAAAATTTAAAAAATAAAT-TATTTACTAAACTAACTTCAAATAGTCATG
** * * * *
124901 AT-TGTTTGAATAATTTTTTATTTCAAATAGTTATGATCTTTTGTTTTGTCCT
130 -TCCATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCCT
* * * *
124953 AAAACAATTGTTTCTGTTCATACAAGTTTATTTGAAATAAAATAATATTAATTGATTAGTACTTT
1 AAAACAATTGTTTCTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA-TTT
* * * ** * * *
125018 -AAAAGTTAGTAGGTAGGAGATTT-AAAAA-AAATTATTTACTGAA-TAAGTTCAAATAGTCATG
65 CAAAAATTAATAAGTAAAAAATTTAAAAAATAAATTATTTACTAAACTAACTTCAAATAGTCATG
*
125079 TCCATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTT-TTTTGTCAT
130 TCCATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCCT
* * * ** ** * * *
125130 AAAACAATTATTTTTGTTCATGCAAAATTATTCAAAATAAAATAATACTGATCTATTAATATTTT
1 AAAACAATTGTTTCTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC
125195 AAAAATTAATAA
66 AAAAATTAATAA
125207 AAGATTTAAA
Statistics
Matches: 509, Mismatches: 89, Indels: 37
0.80 0.14 0.06
Matches are distributed among these distances:
176 3 0.01
177 70 0.14
178 56 0.11
179 22 0.04
180 197 0.39
181 157 0.31
182 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (181 bp):
AAAACAATTGTTTCTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC
AAAAATTAATAAGTAAAAAATTTAAAAAATAAATTATTTACTAAACTAACTTCAAATAGTCATGT
CCATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCCT
Found at i:126038 original size:8 final size:8
Alignment explanation
Indices: 126027--126051 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
126017 TATTTGTTTA
126027 TTAATTAT
1 TTAATTAT
126035 TTAATTAT
1 TTAATTAT
126043 TTAATTAT
1 TTAATTAT
126051 T
1 T
126052 ATTGATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TTAATTAT
Found at i:126215 original size:9 final size:8
Alignment explanation
Indices: 126203--126259 Score: 53
Period size: 9 Copynumber: 6.9 Consensus size: 8
126193 TTTATTATAT
126203 TAATATTTA
1 TAATA-TTA
126212 TAATATTA
1 TAATATTA
*
126220 CTAATAAT-
1 -TAATATTA
126228 TAATATTA
1 TAATATTA
* *
126236 TTATAGTA
1 TAATATTA
126244 TAATAATTA
1 TAAT-ATTA
126253 TAATATT
1 TAATATT
126260 TTTATAATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
7 6 0.15
8 15 0.38
9 18 0.46
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (8 bp):
TAATATTA
Found at i:126229 original size:25 final size:24
Alignment explanation
Indices: 126201--126276 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 24
126191 AATTTATTAT
126201 ATTAATATTTATAATATTACTAATA
1 ATTAATATTTATAATATTA-TAATA
* *
126226 ATTAATA-TTATTATAGTATAATA
1 ATTAATATTTATAATATTATAATA
126249 ATTATAATATTTTTATAATATTAGTAAT
1 A-T-TAATA--TTTATAATATTA-TAAT
126277 TTTGTTATCG
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
23 6 0.15
24 10 0.24
25 12 0.29
28 9 0.22
29 4 0.10
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (24 bp):
ATTAATATTTATAATATTATAATA
Found at i:126247 original size:16 final size:16
Alignment explanation
Indices: 126210--126257 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
126200 TATTAATATT
126210 TATAATATTACTAATAA
1 TATAATATTA-TAATAA
* *
126227 T-TAATATTATTATAG
1 TATAATATTATAATAA
126242 TATAATAATTATAATA
1 TATAAT-ATTATAATA
126258 TTTTTATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 5 0.19
16 12 0.46
17 9 0.35
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (16 bp):
TATAATATTATAATAA
Found at i:126993 original size:14 final size:14
Alignment explanation
Indices: 126968--127004 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
126958 AGTATTATTT
126968 TATTAA-TAAT-AA
1 TATTAATTAATAAA
126980 TATTTAATTAATAAA
1 TA-TTAATTAATAAA
126995 TATTAATTAA
1 TATTAATTAA
127005 ATTAATTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 4 0.18
14 12 0.55
15 4 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TATTAATTAATAAA
Found at i:127252 original size:19 final size:19
Alignment explanation
Indices: 127200--127258 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
127190 GTAGCACTTA
*
127200 AATTATTAAATGTTATTAAT
1 AATTATT-AATATTATTAAT
127220 -ATTATT-A-A--ATTAAT
1 AATTATTAATATTATTAAT
127234 AATTATTAATATTATTAAT
1 AATTATTAATATTATTAAT
*
127253 TATTAT
1 AATTAT
127259 ATAGTAGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
16 1 0.03
17 2 0.06
19 17 0.53
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
AATTATTAATATTATTAAT
Found at i:128553 original size:181 final size:180
Alignment explanation
Indices: 127775--129487 Score: 1015
Period size: 181 Copynumber: 9.6 Consensus size: 180
127765 AATACTTATT
* * * * * * * * * *
127775 ATTTGAAATAGATACTTATTCTAATAGTCTTAACTATTTCAACTGGTTCGACAAACACA-TT-TT
1 ATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGAAATTGTTC-ATAAATATATTTATT
* * * * * *
127838 TTTTAAA---TCT-CTTACTAATTTTTGGAATATTATTAAATTAGTATTATTTGAATT-GAATAA
65 TTTTAAATCTTCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAA
* * * * * *
127898 GC-CAGTATGAAAAGAAACACTTGTTTTATAACAAAA-TAAAGATCATAAAT-
130 GCTTA-TATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCAT-AATG
* * * * *
127948 ATTTGAGATAGATAATTGTTCAAATAATCATAAATATTT-AAACTAT-TTCGGTAAATAGATTT-
1 ATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGAAA-T-TGTTC-ATAAATATATTTA
* ** * * * **
128010 TATTTTTAAA---TCT-CTTATTAATTATCAAAATATTAATATATCAGTATTATTATATTTTGAA
63 T-TTTTTAAATCTTCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAA
* * * * * * *
128071 TAA-TTGTACATGAACAGAAATAATTGTTTTACGACAAAACAAAATGTCATTATG
127 TAAGCT-TATATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * *
128125 ATTTAAAATAGATAA-TAGTTCAAATAAACATGACTATTTGAACTTGTTCAGTAAACA-ATTTTT
1 ATTTGAAATAGATAATTA-TTCAAATAATCATAACTATTTGAAATTGTTCA-TAAATATATTTAT
* * * * * *
128188 TTTTTGAAT-GTCAAACTTATTAATTTTAG-AATACTAATAAATTAGTATTATTTTATTTGAAAT
64 TTTTTAAATCTTC-TACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAAT
** * * * * * * **
128251 AAAATTGTATGAATTG--A-AATTGTTTTATGGCAAAACGAAAGATCGTAACA
128 AAGCTTATATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * * *
128301 ATTTGAAATAAATAATTATTCCAATAGTTATAACTATTTGAACTTGCTCAGTAAATAAATTTATT
1 ATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGAAATTGTTCA-TAAATATATTTATT
* *
128366 TTTTAAATCTTCTACTTATTAATTTTTGAAATTTTAATAAATTAGTATTATTTTATTTCAAAAAA
65 TTTTAAATCTTCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAA
* * * * *
128431 GCTTTTATGAATAGAAACAGTTGGTTTATGACAAAACAAAAGGTTATAACG
130 GCTTATATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * *
128482 ATTTGAAATAGATAATTCTTCAAATAGTCATAACTATTTGAAATTGTTCATAAAATATATTTAAT
1 ATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGAAATTGTTCAT-AAATATATTTATT
* * * * *
128547 TTTTAAAGT-TT-TACTTATTAATTTTTGGAATATTAATAAATTTA-AATCACTTTATTTGAAAT
65 TTTTAAA-TCTTCTACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTCAAAT
* * * * *
128609 AAGCTTACATGAACAGAACCAATTGTTTAATGACAAAACAAAAGATCATAATG
128 AAGCTTATATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * * *
128662 TTTTGAAATAAATAATCA-T-AACT-AT-TTGAACTCATTCGGTAAA-----CATAAACATATTC
1 ATTTGAAATAGATAATTATTCAAATAATCAT-AACT-ATT-TG-AAATTGTTCATAAATATATT-
* * * * * *
128718 T-TTTTTTAATTC-TCTTACTCATTAAATTTT-AGAATATTAATGAATTAGTATTATCTTACTTC
61 TATTTTTTAAATCTTC-TACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTC
* * * * *
128780 AAATAAGCTTATATGAATTGAAACAAGTGTTTTTATTACAAAAGAAGAGGTCATAATG
124 AAATAAGCTTATATGAATAGAAACAATTG-TTTTATGACAAAACAAAAGGTCATAATG
* * * * *
128838 ATTTGAAATAGATAATTATTCAAATATTCATGACTATATGAACTTGTTTAGTAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGAAATTGTTCA-TAAATATATTTATT
* * * * *
128903 TTTTAAATCTTAC-ACTTATTAA-TTGTCAAATATTTATAAATTAATATTATTTTAATATT--AT
65 TTTTAAATCTT-CTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTT-AT-TTCAAA
* * * * *
128964 TAAACTTGTATGAATAGAAATAATTGTTTTATGACAAAACAAAAAGTCATAATA
127 TAAGCTTATATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * ** * * * * * ** * *
129018 AGTTGAAATAAATAATTGCTCTAGTAGTCGTAA-TGATTTGAACTTGTTTGGTAAACAGATTTAT
1 ATTTGAAATAGATAATTATTCAAATAATCATAACT-ATTTGAAATTG-TTCATAAATATATTTAT
* *
129082 TTTTTAAAACTTTTACTTATTAATTGTCTT--AATATTAATAAA-TATGTATTATTTTA-TTCGA
64 TTTTTAAATCTTCTACTTATTAATT-T-TTGAAATATTAATAAATTA-GTATTATTTTATTTC-A
* * * * **
129143 AATAAGCTTAGATGAATAGAAAAAAATTCTTTTATGACAAAACAAAAGGTTATCGCT-
125 AATAAGCTTATATGAATAG-AAACAATTGTTTTATGACAAAACAAAAGGTCAT-AATG
* * * * * * * * *
129200 ATTTCAAATAGATAATTATTTAAATAATCCTAATTATTT-AAATTTGTTTAGAAAATAGAGTCAT
1 ATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGAAA-TTGTTCA-TAAATATATTTAT
* * * * * **
129264 TTTTTAAATCTCTTTA-TTATAAAATTTTGGATTATTAATAAATTAGTATTATTTTATTTTGAAT
64 TTTTTAAATCT-TCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * * *
129328 AAGTTTATATGAATTGAAACAATTCTTTTATGACAAAGCAAAAGGTC------
128 AAGCTTATATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* ** * * ** * ** *
129375 A-TTGAAATAAATAATTATTCAAATTGTCATGATTATTTGATCTAGTGTGGTAAACATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGAAATTGT-TCATAAATATATTTATT
* * * * ** *
129439 TTTAAAATTTTTTACTTATTAATTGTCAAAATATTAACAAATTAGTATT
65 TTTTAAATCTTCTACTTATTAATTTTTGAAATATTAATAAATTAGTATT
129488 TTGACATAAT
Statistics
Matches: 1189, Mismatches: 272, Indels: 157
0.73 0.17 0.10
Matches are distributed among these distances:
172 2 0.00
173 48 0.04
174 97 0.08
175 107 0.09
176 156 0.13
177 86 0.07
178 61 0.05
179 44 0.04
180 208 0.17
181 211 0.18
182 154 0.13
183 14 0.01
184 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
ATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGAAATTGTTCATAAATATATTTATTT
TTTAAATCTTCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAG
CTTATATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
Found at i:128882 original size:537 final size:534
Alignment explanation
Indices: 128209--129190 Score: 1198
Period size: 537 Copynumber: 1.8 Consensus size: 534
128199 CAAACTTATT
* * * * *
128209 AATTTTAGAATACTAATAAATTAGTATTATTTTATTTGAAATAAAATTGTATGAATTGAAATTGT
1 AATTTTAGAATACTAATAAATTAGTATTATCTTACTTCAAATAAAATTATATGAATTGAAAGTGT
* * * *
128274 TTTATGGCAAAACGAAAGATCGTAACAATTTGAAATAAATAATTATTCCAATAGTTATAACTATT
66 TTTATGACAAAACGAAAGATCATAACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATA
* *
128339 TGAACTTGCTCAGTAAATAAATTTATTTTTTAAATCTT-CTACTTATTAATTTTTGAAAT-TTTA
131 TGAACTTGCTCAGTAAATAAATTTATTTTTTAAATCTTAC-ACTTATTAA-TTGTCAAATATTT-
* * *
128402 ATAAATTAGTATTATTTT-AT-TTCAAAAAAGCTTTTATGAATAGAAACAGTTGGTTTATGACAA
193 ATAAATTAATATTATTTTAATATT-AAAAAA-CTTGTATGAATAGAAACAATTGGTTTATGACAA
* * * * *
128465 AACAAAAGGTTATAACGATTTGAAATAGATAATT-CTTCAAATAGTCATAACT-ATTTGAAATTG
256 AACAAAAAGTCATAACAAGTTGAAATAAATAATTGC-TCAAATAGTCATAA-TGATTTGAAATTG
* * * *
128528 -TTCATAAAATATATTTAATTTTT-AAAGTTTTACTTATTAATT-T-TTGGAATATTAATAAATT
319 TTTCAT-AAACAGATTTAATTTTTAAAACTTTTACTTATTAATTGTCTT--AATATTAATAAATA
* ** *
128589 TAAATCACTTTATTTGAAATAAGCTTACATGAACAG-AACCAATTGTTTAATGACAAAACAAAAG
381 TAAATCACTTTATTCGAAATAAGCTTACATGAACAGAAAAAAATTCTTTAATGACAAAACAAAAG
128653 ATCATAATGTTTTGAAATAAATAATCATAACTATTTGAACTCATTCGGTAAACATAAACATATTC
446 ATCATAATGTTTTGAAATAAATAATCATAACTATTTGAACTCATTCGGTAAACATAAACATATTC
128718 TTTTTTTAATTCTCTTACTCATTA
511 TTTTTTTAATTCTCTTACTCATTA
* * **
128742 AATTTTAGAATATTAATGAATTAGTATTATCTTACTTCAAATAAGCTTATATGAATTGAAACAAG
1 AATTTTAGAATACTAATAAATTAGTATTATCTTACTTCAAATAAAATTATATGAATTG--A-AAG
* * ** * *
128807 TGTTTTTATTACAAAA-GAAGAGGTCATAATGATTTGAAATAGATAATTATTCAAATA-TTCATG
63 TG-TTTTATGACAAAACGAA-AGATCATAACAATTTGAAATAAATAATTATTCAAATAGTT-ATA
* * *
128870 ACTATATGAACTTGTTTAGTAAATATATTTATTTTTTAAATCTTACACTTATTAATTGTCAAATA
125 ACTATATGAACTTGCTCAGTAAATAAATTTATTTTTTAAATCTTACACTTATTAATTGTCAAATA
** * *
128935 TTTATAAATTAATATTATTTTAATATTATTAAACTTGTATGAATAGAAATAATTGTTTTATGACA
190 TTTATAAATTAATATTATTTTAATATTAAAAAACTTGTATGAATAGAAACAATTGGTTTATGACA
* * * * *
129000 AAACAAAAAGTCATAATAAGTTGAAATAAATAATTGCTCTAGTAGTCGTAATGATTTGAACTTGT
255 AAACAAAAAGTCATAACAAGTTGAAATAAATAATTGCTCAAATAGTCATAATGATTTGAAATTGT
** * **
129065 TTGGTAAACAGATTTATTTTTTAAAACTTTTACTTATTAATTGTCTTAATATTAATAAATATGTA
320 TTCATAAACAGATTTAATTTTTAAAACTTTTACTTATTAATTGTCTTAATATTAATAAATATAAA
* * * * *
129130 TTATTTTATTCGAAATAAGCTTAGATGAATAGAAAAAAATTCTTTTATGACAAAACAAAAG
385 TCACTTTATTCGAAATAAGCTTACATGAACAGAAAAAAATTCTTTAATGACAAAACAAAAG
129191 GTTATCGCTA
Statistics
Matches: 373, Mismatches: 59, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
533 50 0.13
535 2 0.01
536 125 0.34
537 166 0.45
538 28 0.08
539 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (534 bp):
AATTTTAGAATACTAATAAATTAGTATTATCTTACTTCAAATAAAATTATATGAATTGAAAGTGT
TTTATGACAAAACGAAAGATCATAACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATA
TGAACTTGCTCAGTAAATAAATTTATTTTTTAAATCTTACACTTATTAATTGTCAAATATTTATA
AATTAATATTATTTTAATATTAAAAAACTTGTATGAATAGAAACAATTGGTTTATGACAAAACAA
AAAGTCATAACAAGTTGAAATAAATAATTGCTCAAATAGTCATAATGATTTGAAATTGTTTCATA
AACAGATTTAATTTTTAAAACTTTTACTTATTAATTGTCTTAATATTAATAAATATAAATCACTT
TATTCGAAATAAGCTTACATGAACAGAAAAAAATTCTTTAATGACAAAACAAAAGATCATAATGT
TTTGAAATAAATAATCATAACTATTTGAACTCATTCGGTAAACATAAACATATTCTTTTTTTAAT
TCTCTTACTCATTA
Found at i:128991 original size:356 final size:354
Alignment explanation
Indices: 128364--129033 Score: 800
Period size: 356 Copynumber: 1.9 Consensus size: 354
128354 AATAAATTTA
* * * * *
128364 TTTTTTAAATCTTCTACTTATTAATTTTTGAAATTTTAATAAATTAGTATTATTTTATTTCAAAA
1 TTTTTTAAATCTTCTACTCATTAATTTTAGAAATATTAATAAATTAGTATTATCTTACTTCAAAA
* *
128429 AAGCTTTTATGAATAGAAACAGTTGGTTTATGACAAAACAAAAGGTTATAACGATTTGAAATAGA
66 AAGCTTATATGAATAGAAACAGTTGGTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGA
* * *
128494 TAATTCTTCAAATAGTCATAACTATTTGAAATTGTTCATAAAATATATTTAATTTTTAAAGTTTT
131 TAATTATTCAAATAGTCATAACTATATGAAATTGTTCATAAAATATATTTAATTTTTAAAGTTTC
* ** *
128559 ACTTATTAATTTTTGGAATATTAATAAATTTAAATCACTTTATTTGAAATAAGCTTACATGAACA
196 ACTTATTAATTTGTCAAATATTAATAAATTTAAATCACTTTATTT-AAATAAACTTACATGAACA
* ***
128624 GAACCAATTGTTTAATGACAAAAC-AAAAGATCATAATGTTTTGAAATAAATAATCATAACTATT
260 GAAACAATTGTTTAATGACAAAACAAAAAG-TCATAATAAGTTGAAATAAATAATCATAACTATT
128688 TGAACTCATTCGGTAAACATAAACATATTCT
324 TGAACTCATTCGGTAAACATAAACATATTCT
* *
128719 TTTTTTAATTC-TCTTACTCATTAAATTTTAG-AATATTAATGAATTAGTATTATCTTACTTCAA
1 TTTTTTAAATCTTC-TACTCATT-AATTTTAGAAATATTAATAAATTAGTATTATCTTACTTCAA
* * * * * * *
128782 ATAAGCTTATATGAATTGAAACAAG-TGTTTTTATTACAAAAGAAGAGGTCATAATGATTTGAAA
64 AAAAGCTTATATGAATAGAAAC-AGTTG-GTTTATGACAAAACAAAAGGTCATAACGATTTGAAA
* * * * *
128846 TAGATAATTATTCAAATATTCATGACTATATGAACTTGTTTAGT-AAATATATTTATTTTTTAAA
127 TAGATAATTATTCAAATAGTCATAACTATATGAAATTGTTCA-TAAAATATATTTAATTTTTAAA
* * * *
128910 -TCTTACACTTATTAA-TTGTCAAATATTTATAAA-TTAATATTATTTTAATATT-ATTAAACTT
191 GT-TT-CACTTATTAATTTGTCAAATATTAATAAATTTAA-ATCACTTT-AT-TTAAATAAACTT
** * * *
128971 GTATGAATAGAAATAATTGTTTTATGACAAAACAAAAAGTCATAATAAGTTGAAATAAATAAT
251 ACATGAACAGAAACAATTGTTTAATGACAAAACAAAAAGTCATAATAAGTTGAAATAAATAAT
129034 TGCTCTAGTA
Statistics
Matches: 263, Mismatches: 41, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
354 2 0.01
355 71 0.27
356 171 0.65
357 17 0.06
358 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.41
Consensus pattern (354 bp):
TTTTTTAAATCTTCTACTCATTAATTTTAGAAATATTAATAAATTAGTATTATCTTACTTCAAAA
AAGCTTATATGAATAGAAACAGTTGGTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGA
TAATTATTCAAATAGTCATAACTATATGAAATTGTTCATAAAATATATTTAATTTTTAAAGTTTC
ACTTATTAATTTGTCAAATATTAATAAATTTAAATCACTTTATTTAAATAAACTTACATGAACAG
AAACAATTGTTTAATGACAAAACAAAAAGTCATAATAAGTTGAAATAAATAATCATAACTATTTG
AACTCATTCGGTAAACATAAACATATTCT
Found at i:129699 original size:15 final size:12
Alignment explanation
Indices: 129663--129687 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
129653 TAAGATATTG
129663 AAATATTAATTA
1 AAATATTAATTA
129675 AAATATTAATTA
1 AAATATTAATTA
129687 A
1 A
129688 TAATTTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AAATATTAATTA
Found at i:129701 original size:21 final size:20
Alignment explanation
Indices: 129676--129764 Score: 67
Period size: 21 Copynumber: 4.2 Consensus size: 20
129666 TATTAATTAA
129676 AATATTAATTAATAATTTATT
1 AATATTAA-TAATAATTTATT
*
129697 AATATTAATAACT-ATATTATC
1 AATATTAATAA-TAAT-TTATT
* *
129718 AATTTTAAT-ATTATTGATATT
1 AATATTAATAATAATT--TATT
129739 AATTATTAAATAATAA-TTATT
1 AA-TATT-AATAATAATTTATT
129760 AATAT
1 AATAT
129765 GTTTATTAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 17
0.71 0.06 0.22
Matches are distributed among these distances:
19 2 0.04
20 11 0.20
21 32 0.58
22 3 0.05
23 4 0.07
24 3 0.05
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (20 bp):
AATATTAATAATAATTTATT
Found at i:129762 original size:36 final size:35
Alignment explanation
Indices: 129664--129764 Score: 100
Period size: 36 Copynumber: 2.9 Consensus size: 35
129654 AAGATATTGA
* *
129664 AATATTAATTA-AAATATTAATTAATAAT-TTATT
1 AATATTAATTATAAATAATAATTATTAATATTATT
* * *
129697 AATATTAATAACTATATTATCAATT-TTAATATTATT
1 AATATTAATTA-TAAATAAT-AATTATTAATATTATT
*
129733 GATATTAATTATTAAATAATAATTATTAATAT
1 AATATTAATTA-TAAATAATAATTATTAATAT
129765 GTTTATTAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
33 10 0.19
35 12 0.23
36 31 0.58
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.49
Consensus pattern (35 bp):
AATATTAATTATAAATAATAATTATTAATATTATT
Found at i:130142 original size:22 final size:23
Alignment explanation
Indices: 130103--130156 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
130093 TAATTGTTAT
*
130103 AATA-AATA-ATAATCTAATTTA
1 AATATAATATATAATCTAATTAA
*
130124 ATTATAATATATAAT-TAATTAA
1 AATATAATATATAATCTAATTAA
130146 AATATAATATA
1 AATATAATATA
130157 AATATTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.11
22 20 0.71
23 5 0.18
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
AATATAATATATAATCTAATTAA
Found at i:130303 original size:13 final size:13
Alignment explanation
Indices: 130287--130311 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
130277 AATACAAATA
130287 AATCTAATTATTT
1 AATCTAATTATTT
130300 AATCTAATTATT
1 AATCTAATTATT
130312 AATAAAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:130597 original size:18 final size:18
Alignment explanation
Indices: 130574--130608 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
130564 GTCCAATTAA
130574 ATTATATAATAAATAATT
1 ATTATATAATAAATAATT
*
130592 ATTATATAATATATAAT
1 ATTATATAATAAATAAT
130609 ATACAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTATATAATAAATAATT
Found at i:130609 original size:25 final size:25
Alignment explanation
Indices: 130576--130651 Score: 77
Period size: 25 Copynumber: 3.1 Consensus size: 25
130566 CCAATTAAAT
*
130576 TATATAATAAATAATTATTATATA-A
1 TATATAATAAATAATTATAAT-TACA
* *
130601 TATATAATATACAATTATAATTACA
1 TATATAATAAATAATTATAATTACA
*
130626 TATTATAATAATTAA-TATAATT-CA
1 TA-TATAATAAATAATTATAATTACA
130650 TA
1 TA
130652 AAATATTATT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 6 0.14
25 28 0.65
26 9 0.21
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
TATATAATAAATAATTATAATTACA
Found at i:130621 original size:13 final size:14
Alignment explanation
Indices: 130589--130635 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
130579 ATAATAAATA
*
130589 ATTATTATATA-AT
1 ATTATAATATACAT
130602 A-TATAATATACA-
1 ATTATAATATACAT
130614 ATTATAAT-TACAT
1 ATTATAATATACAT
130627 ATTATAATA
1 ATTATAATA
130636 ATTAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
12 13 0.45
13 16 0.55
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTATAATATACAT
Found at i:130657 original size:47 final size:44
Alignment explanation
Indices: 130567--130657 Score: 103
Period size: 47 Copynumber: 2.0 Consensus size: 44
130557 TATATATGTC
* *
130567 CAATTAAATTATATAATAAATAATTATTATATAATATATAATATA
1 CAATTAAATTACATAATAAATAATTA-TATATAATATAAAATATA
*
130612 CAATTATAATTACATATTATAATAATTA-ATATAATTCATAAAATAT
1 CAATTA-AATTACATAATA-AATAATTATATATAA-T-ATAAAATAT
130658 TATTAATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
45 12 0.31
46 11 0.28
47 16 0.41
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (44 bp):
CAATTAAATTACATAATAAATAATTATATATAATATAAAATATA
Found at i:131674 original size:30 final size:30
Alignment explanation
Indices: 131639--131695 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
131629 CTGGATATAG
* *
131639 TATTATTTTATTATTATTCTAAATAATAAT
1 TATTATTATATAATTATTCTAAATAATAAT
* *
131669 TATTATTATATAATTATTTTAACTAAT
1 TATTATTATATAATTATTCTAAATAAT
131696 TCAATAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (30 bp):
TATTATTATATAATTATTCTAAATAATAAT
Found at i:131808 original size:26 final size:26
Alignment explanation
Indices: 131779--131832 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
131769 CGTCTAAGCT
*
131779 TTATACTAA-TATATTATTAAAAATAA
1 TTATA-TAATTATATAATTAAAAATAA
**
131805 TTATATAATTATATAATTTTAAATAA
1 TTATATAATTATATAATTAAAAATAA
131831 TT
1 TT
131833 TAATTACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (26 bp):
TTATATAATTATATAATTAAAAATAA
Found at i:132440 original size:29 final size:28
Alignment explanation
Indices: 132407--132464 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
132397 GAATGTTAAT
132407 AATTAAAA-ATTTTAATATTTAAATATTTA
1 AATTAAAATA-TTTAAT-TTTAAATATTTA
* *
132436 AATTAAAATATTTAATTTTTATTATTTA
1 AATTAAAATATTTAATTTTAAATATTTA
132464 A
1 A
132465 TTATCGATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 11 0.42
29 14 0.54
30 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (28 bp):
AATTAAAATATTTAATTTTAAATATTTA
Found at i:132452 original size:13 final size:14
Alignment explanation
Indices: 132407--132450 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
132397 GAATGTTAAT
132407 AATTAAAA-ATTTTA
1 AATTAAAATA-TTTA
*
132421 ATATTTAAATATTTA
1 A-ATTAAAATATTTA
132436 AATTAAAATATTTA
1 AATTAAAATATTTA
132450 A
1 A
132451 TTTTTATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 14 0.54
15 11 0.42
16 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AATTAAAATATTTA
Found at i:132576 original size:15 final size:16
Alignment explanation
Indices: 132558--132592 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
132548 ATATTTTAAT
132558 TATTGATT-AATAAAC
1 TATTGATTCAATAAAC
*
132573 TATTGATTCAATAGAC
1 TATTGATTCAATAAAC
132589 TATT
1 TATT
132593 CATATATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.43
Consensus pattern (16 bp):
TATTGATTCAATAAAC
Done.