Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167830.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87221
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.42
Warning! 1000 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:744 original size:180 final size:180
Alignment explanation
Indices: 471--971 Score: 502
Period size: 180 Copynumber: 2.8 Consensus size: 180
461 TCCTTAGGAT
* * * * * ** * ** * *
471 ATTAGTAAATTTATATTATTTTATTCAAAATAAGCTTGTATGAACGTAAACAATTATTTTATGAC
1 ATTAATAAATTAATATTATTTTAATCCAAATAAGCCTAAATAAACAAAAACAATTGTCTTATGAC
* * ** *
536 AAAATAAAAGGTCTTAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTTA
66 AAAACAAAAGATCAAAAT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTTA
* *** *
601 TTC-AGTAAATAAATTTATTTTTTAAATCTCTTACTCATTAATTTTTTGAAT
130 TTCGA-TAAATAAATTTATTTTTTAAATCTCTTACTCATTAATTATCAAAAC
* * * * * *** *
652 ATTAATAAGTTAGTATTGTTTTATTTCAAATAAGCCTAAATAAATTGATACAATT-TCTTATGAC
1 ATTAATAAATTAATATTATTTTAATCCAAATAAGCCTAAATAAACAAAAACAATTGTCTTATGAC
* * * *
716 GAAACAAAAGATCAAAATAATTTGAAATAGATAATTATTTAAATAGTTATTACTATTTGAATTTA
66 AAAACAAAAGATCAAAAT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTTA
* * * * *
781 TTTGATAAACATATTTATTTTTTAAATCTTTTACTTATTAATTATCAAAAC
130 TTCGATAAATAAATTTATTTTTTAAATCTCTTACTCATTAATTATCAAAAC
* * ** * * *
832 ATTAATAAATTAATATTATTTTAATCCGAATAAGCTTTTATGAACAAAAATAATTGTTTTATGAC
1 ATTAATAAATTAATATTATTTTAATCCAAATAAGCCTAAATAAACAAAAACAATTGTCTTATGAC
* * * *
897 AAAACAAAAGGTCATAATATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTAT
66 AAAACAAAAGATCAAAATATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTTAT
962 TCGATAAATA
131 TCGATAAATA
972 GATTATAAAT
Statistics
Matches: 256, Mismatches: 62, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
180 192 0.75
181 64 0.25
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (180 bp):
ATTAATAAATTAATATTATTTTAATCCAAATAAGCCTAAATAAACAAAAACAATTGTCTTATGAC
AAAACAAAAGATCAAAATATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTTAT
TCGATAAATAAATTTATTTTTTAAATCTCTTACTCATTAATTATCAAAAC
Found at i:1079 original size:120 final size:119
Alignment explanation
Indices: 860--1095 Score: 327
Period size: 120 Copynumber: 2.0 Consensus size: 119
850 TTTTAATCCG
860 AATAAGCTTTTATGAACAAAAATAATTGTTTTATGACAAAACAAAAGGTCATAATATTTGAAATA
1 AATAAGCTTTTATGAACAAAAATAATTGTTTTATGACAAAACAAAAGGTCATAATATTTGAAATA
*
925 AATAATTATTCAAATAGTCATAACTATTTGAACTTATTC-GATAAATAGATTATA
66 AATAATTATTCAAATAGCCATAACTATTTGAACTTATTCAG-TAAATAGATTATA
* * *
979 AATAAG-TTTGTATGAATAGAAAA-AATTGTTTTATGACAAAACATATGGTCATAGCA-ATTTGA
1 AATAAGCTTT-TATGAACA-AAAATAATTGTTTTATGACAAAACAAAAGGTCATA--ATATTTGA
* * * *
1041 AGTAGATAATTGTTCAAATAGCCATAACTATTTGAACTTGTTCAGTAAATAGATT
62 AATAAATAATTATTCAAATAGCCATAACTATTTGAACTTATTCAGTAAATAGATT
1096 CATTTTTTAA
Statistics
Matches: 104, Mismatches: 8, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
118 3 0.03
119 41 0.39
120 58 0.56
121 2 0.02
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.35
Consensus pattern (119 bp):
AATAAGCTTTTATGAACAAAAATAATTGTTTTATGACAAAACAAAAGGTCATAATATTTGAAATA
AATAATTATTCAAATAGCCATAACTATTTGAACTTATTCAGTAAATAGATTATA
Found at i:1298 original size:181 final size:181
Alignment explanation
Indices: 979--1306 Score: 394
Period size: 181 Copynumber: 1.8 Consensus size: 181
969 ATAGATTATA
* * * ** * *
979 AATAAGTTTGTATGAATAGAAAAAATTGTTTTATGACAAAACATATGGTCATAGCAATTTGAAGT
1 AATAAGCTTGTATGAACAGAAAAAATTGTTTTATGACAAAACAAAAAGTCATAACAATTTGAAAT
* * * *
1044 AGATAATTGTTCAAATAGCCATAACTATTTGAACTTGTTCAGTAAATAGATTCATTTTTTAAATC
66 AGATAATTGTTCAAATAGCCATAACTATTTGAACTTGTTCAGCAAACAGATACATTTTCTAAATC
1109 TCTTACTTATAAATTTTTGGAATATTAATAAATTAGAATTATGTTATTTCG
131 TCTTACTTATAAATTTTTGGAATATTAATAAATTAGAATTATGTTATTTCG
* * *
1160 AATAAGCTTGTATGAACAGAAACAATTGTTTTGTGACAAAACAAAAAGTCATAACGATTTGAAAT
1 AATAAGCTTGTATGAACAGAAAAAATTGTTTTATGACAAAACAAAAAGTCATAACAATTTGAAAT
* * * * * * *
1225 AGATATTTTTTCAAGCT-GTCATAACTATTTGCAC-TGATT-AGGCCAACATATACATTTTCTAA
66 AGATAATTGTTCAA-ATAGCCATAACTATTTGAACTTG-TTCA-GCAAACAGATACATTTTCTAA
*
1287 ATC-CATTACTTATTAATTTT
128 ATCTC-TTACTTATAAATTTT
1307 GAATTAGCAT
Statistics
Matches: 121, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
180 4 0.03
181 116 0.96
182 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.38
Consensus pattern (181 bp):
AATAAGCTTGTATGAACAGAAAAAATTGTTTTATGACAAAACAAAAAGTCATAACAATTTGAAAT
AGATAATTGTTCAAATAGCCATAACTATTTGAACTTGTTCAGCAAACAGATACATTTTCTAAATC
TCTTACTTATAAATTTTTGGAATATTAATAAATTAGAATTATGTTATTTCG
Found at i:2215 original size:177 final size:178
Alignment explanation
Indices: 1965--2691 Score: 727
Period size: 177 Copynumber: 4.1 Consensus size: 178
1955 TTAATTGTCA
* * * * *
1965 AAATATTAATAAATTAGTATTATTTTAATCCAAATAAGCTTGTATGAATAGAAACAATTGTTTTA
1 AAATATTAATAAATTAGTATTATTTTATTCCTAATAAACTTATATGAACAGAAACAATTGTTTTA
* * * * * *
2030 TAACAAAACAAAATGTCATAAAGATTTGAAATAAATAATTGCTT-AAATAGTCATAATTATGTGA
66 TGACAAAACAAAATGTCATAACGATTTGAAATATATAATTG-TTCAAATAGTCATAACTATTTAA
** *
2094 ACAAGTTTGATAAATAGATTTATTTTTTAAATCACTTT-TTAATTTTTG
130 ACTGGTTTGATAAACAGATTTATTTTTTAAATCACTTTATTAATTTTTG
* * * *
2142 AAATATTAATAGATTAGTATTACTTTATTCCTATTAAACTTATATGAACA-AAACCATTTGTTTT
1 AAATATTAATAAATTAGTATTATTTTATTCCTAATAAACTTATATGAACAGAAA-CAATTGTTTT
* * * * *
2206 ATGACAAAACAAAAAAGTAATAATGATTTGAAATATGTAATTGTTCAAATAGTCATAATTATTTA
65 ATGACAAAAC-AAAATGTCATAACGATTTGAAATATATAATTGTTCAAATAGTCATAACTATTTA
* * * * * *
2271 AACTGATTAGGTAAATAGAATTATTTTTTAAATCTC-TTATTAATTTTTG
129 AACTGGTTTGATAAACAGATTTATTTTTTAAATCACTTTATTAATTTTTG
* * ** * *
2320 AAATATTAATAAATTCA-TTTTATTTTATTCCTAATAAGC-TAGTATGAATTGGGAA-AATTCTT
1 AAATATTAATAAATT-AGTATTATTTTATTCCTAATAAACTTA-TATGAA-CAGAAACAATTGTT
* * * * * * *
2382 TTATGACAAGACAAAAGGTCATAACGATTTGAATTAGATAATTGTTCATATATTCTTAACTATTT
63 TTATGACAAAACAAAATGTCATAACGATTTGAAATATATAATTGTTCAAATAGTCATAACTATTT
** * *
2447 AAACTGGTTTGGCAAGCAAATTTATTTTTTAAATCACTTTGTTATTAATTTTTG
128 AAACTGGTTTGATAAACAGATTTATTTTTTAAATCAC--T-TTATTAATTTTTG
* * * * * * * *
2501 GAATATTATTAGATTAGTATTGTTTTATTTCGAATAAACTTATATGAACAGAAATAATTATTTTA
1 AAATATTAATAAATTAGTATTATTTTATTCCTAATAAACTTATATGAACAGAAACAATTGTTTTA
* * * * *
2566 TGGCATAACAAAATGTTATAACGATTTGAAGTATAGAATTGTTCAAATAGTCATAACTA-TTAGA
66 TGACAAAACAAAATGTCATAACGATTTGAAATATATAATTGTTCAAATAGTCATAACTATTTA-A
* * *
2630 ACTGGTTCGATAAACAGATTCATTTTTTAAATC-TTTTATTAA-TTTTG
130 ACTGGTTTGATAAACAGATTTATTTTTTAAATCACTTTATTAATTTTTG
*
2677 AAAGATTAATAAATT
1 AAATATTAATAAATT
2692 GTTATTTTTA
Statistics
Matches: 447, Mismatches: 87, Indels: 33
0.79 0.15 0.06
Matches are distributed among these distances:
176 19 0.04
177 145 0.32
178 138 0.31
179 1 0.00
180 9 0.02
181 133 0.30
182 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (178 bp):
AAATATTAATAAATTAGTATTATTTTATTCCTAATAAACTTATATGAACAGAAACAATTGTTTTA
TGACAAAACAAAATGTCATAACGATTTGAAATATATAATTGTTCAAATAGTCATAACTATTTAAA
CTGGTTTGATAAACAGATTTATTTTTTAAATCACTTTATTAATTTTTG
Found at i:3146 original size:138 final size:138
Alignment explanation
Indices: 2898--3176 Score: 558
Period size: 138 Copynumber: 2.0 Consensus size: 138
2888 GTTTTATGAC
2898 AAAATAAAGATCACAAAGATTTGAGATAGATAATTGTTCAAATAGTCATAAATATTTGAACTATT
1 AAAATAAAGATCACAAAGATTTGAGATAGATAATTGTTCAAATAGTCATAAATATTTGAACTATT
2963 TCGGTAAATAGATTTTATTTTTAAATCTCTTATTAATTATCAAAATATTAATAGATCAGTATTAT
66 TCGGTAAATAGATTTTATTTTTAAATCTCTTATTAATTATCAAAATATTAATAGATCAGTATTAT
3028 TATATTCT
131 TATATTCT
3036 AAAATAAAGATCACAAAGATTTGAGATAGATAATTGTTCAAATAGTCATAAATATTTGAACTATT
1 AAAATAAAGATCACAAAGATTTGAGATAGATAATTGTTCAAATAGTCATAAATATTTGAACTATT
3101 TCGGTAAATAGATTTTATTTTTAAATCTCTTATTAATTATCAAAATATTAATAGATCAGTATTAT
66 TCGGTAAATAGATTTTATTTTTAAATCTCTTATTAATTATCAAAATATTAATAGATCAGTATTAT
3166 TATATTCT
131 TATATTCT
3174 AAA
1 AAA
3177 TAATTGTACA
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 141 1.00
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.40
Consensus pattern (138 bp):
AAAATAAAGATCACAAAGATTTGAGATAGATAATTGTTCAAATAGTCATAAATATTTGAACTATT
TCGGTAAATAGATTTTATTTTTAAATCTCTTATTAATTATCAAAATATTAATAGATCAGTATTAT
TATATTCT
Found at i:3760 original size:180 final size:180
Alignment explanation
Indices: 3054--4588 Score: 1166
Period size: 180 Copynumber: 8.6 Consensus size: 180
3044 GATCACAAAG
* * * * * *
3054 ATTTGAGATAGATAATTGTTCAAATAGTCATAAATATTTGAACTAT-TTCGGTAAATAGATTT-T
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT-TGTTCAGTAAACATATTTAT
* * * * * *
3117 ATTTTTAAATC--T-CTTATTAATTATCAAAATATTAATAGATCAGTATTATTATA-TTCTAAAT
65 -TTTTTAAATCTTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTC-AAAT
* * * * * **
3178 AA--TTGTACATGAACATAAATAATTGTTTT-TCGACAAAACAAAAATGTCATTATG
128 AAGCTTGT--ATGAATAGAAACAATTGTTTTAT-GACAAAAC-AAAAGGTCATAACA
** * * *
3232 ATTTGAAATAGATAA-TAGTTCAAATAAACATGACTATTTGAACTTGTTCAGTAAATAAATTTAT
1 ATTTGAAATAGATAATTA-TTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTAT
** * * *
3296 TTTTTAAATCTCAAACTTATTTATTTTTAGAATACTAATAAATTAGTATTATTTTATTTTAAATA
65 TTTTTAAATCT-TTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATA
** * *
3361 AAATTGTATGAATAGAAATAATTGTTTTATGACAAAACAAAAGATCATAACA
129 AGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * * * * *
3413 ATTTAAAACAAATAATTATTCCAATAATCATAACTATTTGAACTTGCTT-GGTAAACAGATTTAT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG-TTCAGTAAACATATTTAT
* * *
3477 TTTTTAAATCTTCTACTTATTAATTTTTGGAATTTTAATAAATTAGTATTATTTTATTTCAAAAA
65 TTTTTAAATCTT-TACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATA
* *
3542 AGCTTTTATGAATAGAAACAATTGGTTTATG-CAAAACAAAAGGTCATAACA
129 AGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * *
3593 ATTTGAAATAGATAATTCTTCAAATAGTCATAACTATTTGAAATTGTTCAGAAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTATT
* * * * *
3658 TTTTAAAGT-TTTAGTTATTAATTTTTGGAATATTAATAAATTTA-AATTACTTTATTTGAAATA
66 TTTTAAA-TCTTTACTTATTAATTTTTAGAATATTAATAAA-TTAGTATTATTTTATTTCAAATA
* * * * * **
3721 AGCTTGCATGAATAGAACCAATTGTTTAATGAGAAAACAAAAGATCATAATG
129 AGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * * *
3773 TTTTGAAATAGATAATTGTTCAGATAGTCATAACTATTTGAACTTATTCGGTAAACATATTCT-T
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATT-TAT
* * * * * * *
3837 TTTTTAATTCTCTTACTCATTAATTTTCAAAATATTAATGAATTAGTATTATCTTACTTCAAATA
65 TTTTTAAATCT-TTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATA
* * * * * **
3902 AGCTTATATG-ATTGAAACAAGTGTTTTATTACAAAAGAAAAGGTCATAATG
129 AGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * * *
3953 ATTTGAAAAAGATAATTATTCAAATATTCATGACTATTTGAACTTGTTTAGTAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTATT
* * * * * * *
4018 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTTATAAATTAATATTATTTTAATCCAAATAA
66 TTTTAAATC-TTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAA
* * * * *
4083 ACTTGTATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAACA
130 GCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * ** * * ** *
4134 AGTTGAAATAAATAATTGCTCAAAAAAGCCATAA-TGATTTGAACTTGTTTGGTAAACAAATTTA
1 ATTTGAAATAGATAATTATTC-AAATAGTCATAACT-ATTTGAACTTGTTCAGTAAACATATTTA
* * *
4198 TTTTTTAAATATTTTACTTATTAATTGTCTT--AATATTAATAAAATATGTATTATTTTATTTGA
64 TTTTTTAAAT-CTTTACTTATTAATT-T-TTAGAATATTAATAAATTA-GTATTATTTTATTTCA
* * * * * *
4261 AATAAGCTTAG-ATGAATAGAAAAAAAATTCTTTTATGACAAAACAAAATGTTATAGCT
125 AATAAGCTT-GTATGAATAG--AAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * * *
4319 ATTTCAAATAGAT-A--ATT---AT--T--TAA--ATTTG----T-TT-AGAAAACAGAGTCATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTATT
* * ** **
4366 TTTTAAATCTCTTTA-TTATAAATTTTTGGTTTATTAATAAATTAGTATTATTTTATTTTGAATA
66 TTTTAAA--TCTTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATA
** * * * * *
4430 AATTTATATGAATTGAAACAATTTTTTTATGACGAAGCAAAAGG---T--C-
129 AGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * * * * *
4476 A-TTGAAATAGATAATTATTCAAATTGTCGTGATTATTTGATCTAGTGT-GGTAAACATATTTAT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGT-TCAGTAAACATATTTAT
* * * * * *
4539 TTTTAAAATTTTTTACTTATTAATTGTCAAAATATTAACAAATTAGTATT
65 TTTTTAAA-TCTTTACTTATTAATTTTTAGAATATTAATAAATTAGTATT
4589 TTGACATAAT
Statistics
Matches: 1087, Mismatches: 212, Indels: 120
0.77 0.15 0.08
Matches are distributed among these distances:
156 10 0.01
157 2 0.00
158 1 0.00
159 3 0.00
160 1 0.00
162 2 0.00
163 24 0.02
164 3 0.00
165 29 0.03
166 40 0.04
167 6 0.01
168 7 0.01
172 5 0.00
173 6 0.01
174 47 0.04
177 2 0.00
178 61 0.06
179 73 0.07
180 310 0.29
181 237 0.22
182 141 0.13
183 29 0.03
184 7 0.01
185 41 0.04
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTATT
TTTTAAATCTTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAAG
CTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
Found at i:4712 original size:32 final size:31
Alignment explanation
Indices: 4668--4743 Score: 73
Period size: 32 Copynumber: 2.4 Consensus size: 31
4658 TTAATTATCT
* *
4668 ATTATTTAAATTAAAAATTT-ATTTTATATTAA
1 ATTATTT-AATTAAAAATTTGA-ATTAAATTAA
**
4700 ATTATATTAATTATTAATTTGAATTAAATTAA
1 ATTAT-TTAATTAAAAATTTGAATTAAATTAA
4732 ATTATTTTAATT
1 ATTA-TTTAATT
4744 TTGAATAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
32 33 0.89
33 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (31 bp):
ATTATTTAATTAAAAATTTGAATTAAATTAA
Found at i:4763 original size:26 final size:25
Alignment explanation
Indices: 4695--4757 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
4685 TTTATTTTAT
*
4695 ATTAAATTATATTAATTATTAATTTGA
1 ATTAAATTAAATT-ATT-TTAATTTGA
4722 ATTAAATTAAATTATTTTAATTTTGA
1 ATTAAATTAAATTATTTTAA-TTTGA
4748 A-TAATATTAA
1 ATTAA-ATTAA
4758 TATATTGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
25 7 0.21
26 14 0.42
27 12 0.36
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (25 bp):
ATTAAATTAAATTATTTTAATTTGA
Found at i:4869 original size:17 final size:16
Alignment explanation
Indices: 4845--4908 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 16
4835 TAATATGTTT
4845 AATAATTAATTATTAA
1 AATAATTAATTATTAA
*
4861 AACTAATTAA-TATATGA
1 AA-TAATTAATTAT-TAA
*
4878 AATTATTAATTAATTAA
1 AATAATTAATT-ATTAA
4895 AATAATTAACTTAT
1 AATAATTAA-TTAT
4909 GTAATATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
16 11 0.28
17 24 0.62
18 4 0.10
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (16 bp):
AATAATTAATTATTAA
Found at i:6132 original size:177 final size:176
Alignment explanation
Indices: 5667--6383 Score: 505
Period size: 177 Copynumber: 4.0 Consensus size: 176
5657 GCTAATTATA
*
5667 TTTTAAATCTCTTACTTATTATTTTTTGAAATATTAATAAATTCATT-TTATTTTATTTCGAATA
1 TTTTAAATC-CTTACTTATTA-TTTTTGAAATATTAATAAATT-ATTATTATTTTATTTTGAATA
* * * *
5731 AGCTAGTATGAATTAAGAAAATTGTTTTTATAACAAGACAAAAGGTCATAACGATTTGAAATATA
63 AGCT-GTATG-ATAAAAAAAATTG-TTTTATGACAA-ACAAAAGATCATAACGATTTGAAATATA
* * * * *
5796 TAATTGTTCATATAGTCTTAACTATTTCAATTGGTTCGACAAACAAATTTATT
124 GAATTGTTCAAATAGTCATAACTATTTCAACTGGTTCGACAAACAAATTCATT
* * * * * *
5849 TTTTAAATCCCTTAATTATTAATTTTTGGAATATTATTAGATTAGTATTGTTTTATTTTGAATAA
1 TTTTAAAT-CCTTACTTATT-ATTTTTGAAATATTAATAAATTATTATTATTTTATTTTGAATAA
* * * *
5914 GCTTGTATGA-ACAGAAATAATTGTTTTATGACATAACAAAAGATTATAATGATTT-AAAGTATG
64 GC-TGTATGATA-A-AAAAAATTGTTTTATGACA-AACAAAAGATCATAACGATTTGAAA-TATA
* * ** *
5977 GAATTGTTCAAATAGTCATAACTATTTGAACTGGTTTGGTAAACAGATTCATT
124 GAATTGTTCAAATAGTCATAACTATTTCAACTGGTTCGACAAACAAATTCATT
* * *
6030 TTTTAAAT-C-T-CTTATTCATTTTTAAAAGATTAATAAATTATTATTATTTTATTTTGAATAAT
1 TTTTAAATCCTTACTTATT-ATTTTTGAAATATTAATAAATTATTATTATTTTATTTTGAATAAG
* * * * *
6092 CATGTATGATAAAAAACAATTGTTATATGACCAAACAAAAGGTGATAACGATTTGAAATAAATAA
65 C-TGTATGATAAAAAA-AATTGTTTTATGA-CAAACAAAAGATCATAACGATTTGAAATATAGAA
* * * ** * * * * *
6157 TTGTTGAAAT-GACCAT-A--ATTTGAACTAATTTGGA-AAATAGATTTACT
127 TTGTTCAAATAG-TCATAACTATTTCAACT-GGTTCGACAAACAAATTCATT
* * *
6204 TTTTAAATCACTTA-TTGATTGATTTTTGGAATATTAATAAATTATAAGTATTTTATTTTGAATA
1 TTTTAAATC-CTTACTT-ATT-ATTTTTGAAATATTAATAAATTATTATTATTTTATTTTGAATA
* * * * * * * * * *
6268 AACTTGTATGA-ACTGAAACAATTATTTTATG----ACAAAACATCACAATGATTTTAAATAGAC
63 AGC-TGTATGATA--AAAAAAATTGTTTTATGACAAACAAAAGATCATAACGATTTGAAATATAG
* * * * * * * *
6328 AATTGTTTAAATAGTCATAACTATATGAATTTGCTCGATAAACAAATTTATT
125 AATTGTTCAAATAGTCATAACTATTTCAACTGGTTCGACAAACAAATTCATT
6380 TTTT
1 TTTT
6384 TTAAACTCTT
Statistics
Matches: 425, Mismatches: 84, Indels: 58
0.75 0.15 0.10
Matches are distributed among these distances:
173 35 0.08
174 29 0.07
175 6 0.01
176 27 0.06
177 101 0.24
178 67 0.16
179 4 0.01
180 3 0.01
181 84 0.20
182 66 0.16
183 3 0.01
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (176 bp):
TTTTAAATCCTTACTTATTATTTTTGAAATATTAATAAATTATTATTATTTTATTTTGAATAAGC
TGTATGATAAAAAAAATTGTTTTATGACAAACAAAAGATCATAACGATTTGAAATATAGAATTGT
TCAAATAGTCATAACTATTTCAACTGGTTCGACAAACAAATTCATT
Found at i:7184 original size:13 final size:13
Alignment explanation
Indices: 7137--7185 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
7127 TTTAAAATAT
7137 ATAAATATTTTAA
1 ATAAATATTTTAA
* *
7150 ATAGAGATTATTAA
1 ATAAATATT-TTAA
*
7164 CT-AATATTTTAA
1 ATAAATATTTTAA
7176 ATAAATATTT
1 ATAAATATTT
7186 GTATTTAATT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
12 5 0.18
13 18 0.64
14 5 0.18
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (13 bp):
ATAAATATTTTAA
Found at i:8105 original size:19 final size:19
Alignment explanation
Indices: 8081--8117 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8071 TATTTATCAA
*
8081 ACCAGTTTAAATAATTATG
1 ACCAGTTCAAATAATTATG
*
8100 ACCAGTTCAAATAGTTAT
1 ACCAGTTCAAATAATTAT
8118 TACTATTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.35
Consensus pattern (19 bp):
ACCAGTTCAAATAATTATG
Found at i:9341 original size:19 final size:20
Alignment explanation
Indices: 9313--9354 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
9303 ATTGTTTAAC
*
9313 AATTATTAATTA-ATAATTA
1 AATTAATAATTATATAATTA
*
9332 AATTAATAATTATATGATTA
1 AATTAATAATTATATAATTA
9352 AAT
1 AAT
9355 AATTTATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
AATTAATAATTATATAATTA
Found at i:9370 original size:19 final size:19
Alignment explanation
Indices: 9335--9421 Score: 65
Period size: 19 Copynumber: 4.6 Consensus size: 19
9325 ATAATTAAAT
9335 TAATAATTA-TATGATTAA-A
1 TAAT-ATTATTAT-ATTAATA
*
9354 TAATTTATATTATATTAATA
1 TAATAT-TATTATATTAATA
*
9374 TAATATTATTATATTATTA
1 TAATATTATTATATTAATA
* *
9393 T-ATATAATTAAATTAA-A
1 TAATATTATTATATTAATA
*
9410 TTAATGTTATTA
1 -TAATATTATTA
9422 AATATTATTA
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
17 1 0.02
18 14 0.25
19 31 0.56
20 9 0.16
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TAATATTATTATATTAATA
Found at i:9435 original size:16 final size:16
Alignment explanation
Indices: 9360--9461 Score: 56
Period size: 16 Copynumber: 6.6 Consensus size: 16
9350 TAAATAATTT
*
9360 ATATTA-TATTAATATA
1 ATATTATTATTATTA-A
*
9376 ATATTATTATATTATTAT
1 ATATTA-T-TATTATTAA
* *
9394 ATATAATTA-AATT-A
1 ATATTATTATTATTAA
* *
9408 A-ATTAATGTTATTAA
1 ATATTATTATTATTAA
9423 ATATTATTATTA-TAA
1 ATATTATTATTATTAA
*
9438 ATTATTATAATTA-TAA
1 A-TATTATTATTATTAA
9454 A-ATTATTA
1 ATATTATTA
9462 CTATATTTAA
Statistics
Matches: 66, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
13 4 0.06
14 10 0.15
15 9 0.14
16 30 0.45
17 1 0.02
18 5 0.08
19 7 0.11
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (16 bp):
ATATTATTATTATTAA
Found at i:9548 original size:30 final size:30
Alignment explanation
Indices: 9508--9581 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 30
9498 ATATTTAAAA
* *
9508 ATTTATTAATTA-ATGATTATAATCTATTCA-T
1 ATTTA-TAATTATATGAATATAA-ATATT-ATT
9539 ATTTATAATTATATGAATATAAATATTATT
1 ATTTATAATTATATGAATATAAATATTATT
*
9569 ATTTATAAATATA
1 ATTTATAATTATA
9582 GTATAATAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
29 1 0.03
30 23 0.61
31 14 0.37
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (30 bp):
ATTTATAATTATATGAATATAAATATTATT
Found at i:9709 original size:24 final size:25
Alignment explanation
Indices: 9663--9709 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
9653 ATTAATTATT
* *
9663 ATAATTAGATATTATTAATTAATTA
1 ATAATTAGATATTATAAAATAATTA
9688 ATAATTA-ATATTATAAAATAAT
1 ATAATTAGATATTATAAAATAAT
9710 ATTTATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (25 bp):
ATAATTAGATATTATAAAATAATTA
Found at i:9794 original size:19 final size:19
Alignment explanation
Indices: 9554--9794 Score: 51
Period size: 19 Copynumber: 12.3 Consensus size: 19
9544 TAATTATATG
*
9554 AATATAA-ATATTATTATT
1 AATATAATATATTATAATT
* *
9572 TATA-AATATAGTATAA-T
1 AATATAATATATTATAATT
9589 AATATCTATATTATAATT-TAATT
1 AATA--TA-A-TAT-ATTATAATT
* *
9612 ATTATAAAATTATTATAA-T
1 AATATAATA-TATTATAATT
* * *
9631 ATTATAAAGTTTATTATATTT
1 AATAT-AA-TATATTATAATT
9652 AAT-TAAT-TATTATAATT
1 AATATAATATATTATAATT
* *
9669 AGATATTAT-TAAT-TAATT
1 A-ATATAATATATTATAATT
* *
9687 AATA-ATTAATATTATAAAAT
1 AATATAAT-ATATTAT-AATT
*
9707 AATAT-TTATATTAGTAAATCAT
1 AATATAATATATTA-T-AAT--T
* * *
9729 AACAATATTTATATTATTATT
1 AA-TATA-ATATATTATAATT
9750 AATTATAATA-A-T-TAATT
1 AA-TATAATATATTATAATT
9767 AGACTTATAATATATTATAATT
1 A-A--TATAATATATTATAATT
9789 AATATA
1 AATATA
9795 TAATAATCAT
Statistics
Matches: 167, Mismatches: 25, Indels: 61
0.66 0.10 0.24
Matches are distributed among these distances:
16 1 0.01
17 24 0.14
18 24 0.14
19 38 0.23
20 32 0.19
21 14 0.08
22 15 0.09
23 10 0.06
24 1 0.01
25 8 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
AATATAATATATTATAATT
Found at i:9807 original size:16 final size:15
Alignment explanation
Indices: 9772--9809 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
9762 TAATTAGACT
*
9772 TATAATATATTATAA
1 TATAATATATAATAA
9787 T-TAATATATAATAA
1 TATAATATATAATAA
9801 TCATAATAT
1 T-ATAATAT
9810 TAAGCATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 13 0.65
15 1 0.05
16 6 0.30
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (15 bp):
TATAATATATAATAA
Found at i:10034 original size:24 final size:24
Alignment explanation
Indices: 9989--10032 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
9979 GAAAATTCAA
9989 TTAAACTATATTATAATTATAATT
1 TTAAACTATATTATAATTATAATT
10013 TTAAA-TA-ATTATAA-TATAAT
1 TTAAACTATATTATAATTATAAT
10033 AAATATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 7 0.35
23 2 0.10
24 5 0.25
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
TTAAACTATATTATAATTATAATT
Found at i:10053 original size:16 final size:16
Alignment explanation
Indices: 10004--10055 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
9994 CTATATTATA
*
10004 ATTAT-AATTTTAAAT
1 ATTATAAATATTAAAT
*
10019 AATTATAATATAATAAAT
1 -ATTATAA-ATATTAAAT
10037 ATTATAAATATTAAAT
1 ATTATAAATATTAAAT
10053 ATT
1 ATT
10056 TTATTATTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 16 0.52
17 8 0.26
18 7 0.23
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTATAAATATTAAAT
Found at i:10300 original size:14 final size:15
Alignment explanation
Indices: 10281--10311 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10271 TTAATTATGT
10281 AATTAT-TAAATTTA
1 AATTATATAAATTTA
10295 AATTATATAAATTTA
1 AATTATATAAATTTA
10310 AA
1 AA
10312 ATAACAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTATATAAATTTA
Found at i:10363 original size:22 final size:21
Alignment explanation
Indices: 10322--10366 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
10312 ATAACAATTA
*
10322 TTAATATTATAATAATTTAAT
1 TTAATATTAGAATAATTTAAT
*
10343 TTAATTATTAGAATTAATTAAAT
1 TTAA-TATTAGAA-TAATTTAAT
10366 T
1 T
10367 ATTGATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 7 0.35
23 9 0.45
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
TTAATATTAGAATAATTTAAT
Found at i:10377 original size:18 final size:18
Alignment explanation
Indices: 10336--10374 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
10326 TATTATAATA
*
10336 ATTTAATTTAATTATTAG
1 ATTTAATTAAATTATTAG
*
10354 AATTAATTAAATTATT-G
1 ATTTAATTAAATTATTAG
10371 ATTT
1 ATTT
10375 TAAATTTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
ATTTAATTAAATTATTAG
Found at i:10775 original size:16 final size:17
Alignment explanation
Indices: 10749--10782 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
10739 ATTTTATTAA
10749 TTATAAATAATACTATT
1 TTATAAATAATACTATT
*
10766 TTAT-AATAATATTATT
1 TTATAAATAATACTATT
10782 T
1 T
10783 GAATAACATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATAAATAATACTATT
Found at i:10841 original size:16 final size:17
Alignment explanation
Indices: 10799--10851 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 17
10789 CATCTTATAC
*
10799 ATTATATTTAATAATATA
1 ATTATAGTTAATAAT-TA
10817 A--ATAGTTAATAATTA
1 ATTATAGTTAATAATTA
10832 ATTATA-TTAATAATT-
1 ATTATAGTTAATAATTA
10847 ATTAT
1 ATTAT
10852 TATCTATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 8 0.25
16 20 0.62
17 3 0.09
18 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
ATTATAGTTAATAATTA
Found at i:11376 original size:181 final size:181
Alignment explanation
Indices: 11099--11620 Score: 637
Period size: 181 Copynumber: 2.9 Consensus size: 181
11089 ACCAATCAAG
* * *
11099 TTCAAATAGTTATGACTATTTGAACAATTATTTATTTAAAATCATTATGACCTTTTGTTTTGACA
1 TTCAAATAATTATGACTATTTAAACAATTATTTATTTAAAATCATTATGACCTTTTGTTTTGTCA
* * *
11164 AAAAACAATTGTTTCAATTCATAAAAGCTTATCCAAAATAAAATAATAATAATTTCTTAATATTT
66 TAAAACAATTGTTTCAATTCATACAAGCTTATCCAAAATAAAATAATAATAATTTATTAATATTT
*
11229 CAAAAATTAATAAGCAAGAG-TTAAAAAAAATTAATT-TGTTTA-CTGAACAAA
131 CAAAAATTAATAAGTAAGAGATT-AAAAAAA-TAATTATGTTTATC-GAACAAA
*
11280 TTCAAATAATTATGATTATTTAAACAATTATTTATTTAAAATCATTATGACCTTTTGTTTTGTCA
1 TTCAAATAATTATGACTATTTAAACAATTATTTATTTAAAATCATTATGACCTTTTGTTTTGTCA
* *
11345 TAAAACAATTGTTTCAGTTCATACAAGCTTATTCC-AAATAAAATAATAGTAATTTATTAATATT
66 TAAAACAATTGTTTCAATTCATACAAGCTTA-TCCAAAATAAAATAATAATAATTTATTAATATT
* * * ** *
11409 TCAAAAATTAATAAGTAAGTGATTTAAAAAATGATTATGTTTATCGAATTAG
130 TCAAAAATTAATAAGTAAGAGATTAAAAAAATAATTATGTTTATCGAACAAA
* * * * * * *
11461 TTCAAATAATTATGGCTATTTCAACAATTATCTATTTGAAATCAATATTACCTTTTGTTTGGTCA
1 TTCAAATAATTATGACTATTTAAACAATTATTTATTTAAAATCATTATGACCTTTTGTTTTGTCA
* * ** * * * *
11526 TATAACAGTTGGTTTTTA-TCATACAAGC-T-T-CAGAATAAAAAAATACTAATTTATTAATCTT
66 TAAAACAATT-GTTTCAATTCATACAAGCTTATCCAAAATAAAATAATAATAATTTATTAATATT
* * *
11587 TCAAAAGTTAATAAGTAAGAAATTTAAAAAATAA
130 TCAAAAATTAATAAGTAAGAGATTAAAAAAATAA
11621 ATTTATTTAT
Statistics
Matches: 298, Mismatches: 37, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
177 1 0.00
178 56 0.19
180 5 0.02
181 226 0.76
182 10 0.03
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (181 bp):
TTCAAATAATTATGACTATTTAAACAATTATTTATTTAAAATCATTATGACCTTTTGTTTTGTCA
TAAAACAATTGTTTCAATTCATACAAGCTTATCCAAAATAAAATAATAATAATTTATTAATATTT
CAAAAATTAATAAGTAAGAGATTAAAAAAATAATTATGTTTATCGAACAAA
Found at i:11967 original size:15 final size:16
Alignment explanation
Indices: 11942--11972 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
11932 TATATATTTA
11942 TTAATATTTATTAATT
1 TTAATATTTATTAATT
11958 TTAA-ATTTATTAATT
1 TTAATATTTATTAATT
11973 AATTATATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTAATATTTATTAATT
Found at i:12204 original size:22 final size:19
Alignment explanation
Indices: 12179--12231 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 19
12169 AATTATCAGT
12179 AATAATAATATATCAATATTAC
1 AATAATAATA-AT-AATATT-C
* *
12201 AATAATTATAATAATATTT
1 AATAATAATAATAATATTC
*
12220 AATAATATTAAT
1 AATAATAATAAT
12232 TTAATTTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 10 0.37
20 6 0.22
21 2 0.07
22 9 0.33
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (19 bp):
AATAATAATAATAATATTC
Found at i:12238 original size:19 final size:19
Alignment explanation
Indices: 12216--12255 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
12206 TTATAATAAT
*
12216 ATTTAA-TAATATTAATTTA
1 ATTTAATTAATAAT-ATTTA
12235 ATTTAATTAATAATATTTA
1 ATTTAATTAATAATATTTA
12254 AT
1 AT
12256 CTTCATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTAATTAATAATATTTA
Found at i:12798 original size:10 final size:10
Alignment explanation
Indices: 12783--12823 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
12773 TGTTATAACT
12783 TAATTACTTA
1 TAATTACTTA
*
12793 TAATTAATTA
1 TAATTACTTA
12803 TTAATT--TTA
1 -TAATTACTTA
12812 TAATTACTTA
1 TAATTACTTA
12822 TA
1 TA
12824 TAATAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
8 5 0.19
9 3 0.11
10 14 0.52
11 5 0.19
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (10 bp):
TAATTACTTA
Found at i:12814 original size:19 final size:20
Alignment explanation
Indices: 12790--12827 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
12780 ACTTAATTAC
12790 TTATAATTAATTAT-TAATT
1 TTATAATTAATTATATAATT
*
12809 TTATAATTACTTATATAAT
1 TTATAATTAATTATATAAT
12828 AATAAACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (20 bp):
TTATAATTAATTATATAATT
Found at i:13127 original size:22 final size:21
Alignment explanation
Indices: 13086--13155 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
13076 AATTTATTAG
**
13086 TAATTTATTAATAAGTAAAAT
1 TAATTTATTAATAACAAAAAT
13107 TAATATTATTAATAACAAAAA-
1 TAAT-TTATTAATAACAAAAAT
* *
13128 TATTTGTAATAATAACACAAAAAT
1 TAATT-TATTAAT-A-ACAAAAAT
13152 TAAT
1 TAAT
13156 AATAATTATT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
20 1 0.03
21 13 0.33
22 15 0.38
23 7 0.18
24 3 0.08
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (21 bp):
TAATTTATTAATAACAAAAAT
Found at i:13158 original size:21 final size:20
Alignment explanation
Indices: 13102--13161 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
13092 ATTAATAAGT
13102 AAAATTAATATTATTAATAACAA
1 AAAATTAATA--A-TAATAACAA
**
13125 AAATATTTGTAATAATAACACA
1 AAA-ATTAATAATAATAACA-A
13147 AAAATTAATAATAAT
1 AAAATTAATAATAAT
13162 TATTAATAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
21 18 0.58
22 5 0.16
23 3 0.10
24 5 0.16
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAATTAATAATAATAACAA
Found at i:13431 original size:13 final size:14
Alignment explanation
Indices: 13385--13433 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
13375 ATAAATTCTT
13385 ATTAATT-AT-TTA
1 ATTAATTAATATTA
*
13397 ATATAATAAAGTATTA
1 AT-TAATTAA-TATTA
13413 ATTAATTAATATT-
1 ATTAATTAATATTA
13426 ATTAATTA
1 ATTAATTA
13434 TCTAAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 2 0.06
13 12 0.39
14 5 0.16
15 7 0.23
16 5 0.16
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTAATTAATATTA
Found at i:13521 original size:21 final size:18
Alignment explanation
Indices: 13486--13548 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 18
13476 TTGTTTAATA
13486 AAATTAATATTATTATAT
1 AAATTAATATTATTATAT
13504 AAATTAATAATGTAATTATAT
1 AAATTAAT-AT-T-ATTATAT
*
13525 AATATTTAT-TATATTATAAT
1 AA-ATTAATAT-TATTAT-AT
13545 AAAT
1 AAAT
13549 ATTTAATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
18 8 0.21
19 9 0.24
20 7 0.18
21 9 0.24
22 5 0.13
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
AAATTAATATTATTATAT
Found at i:13551 original size:21 final size:21
Alignment explanation
Indices: 13481--13566 Score: 67
Period size: 21 Copynumber: 4.2 Consensus size: 21
13471 TTCAATTGTT
13481 TAATAAA-A-TTAATATTATTA
1 TAATAAATATTTAATA-TATTA
* *
13501 T-ATAAAT-TAATAATGTAATTA
1 TAATAAATAT-TTAATAT-ATTA
*
13522 T-AT-AATATTTATTATATTA
1 TAATAAATATTTAATATATTA
*
13541 TAATAAATATTTAATATATAA
1 TAATAAATATTTAATATATTA
13562 TAATA
1 TAATA
13567 TTATATAATT
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
19 10 0.19
20 11 0.21
21 31 0.60
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (21 bp):
TAATAAATATTTAATATATTA
Found at i:13586 original size:17 final size:18
Alignment explanation
Indices: 13481--13599 Score: 68
Period size: 18 Copynumber: 6.2 Consensus size: 18
13471 TTCAATTGTT
*
13481 TAATAAAATTAATATTATTA
1 TAAT-AAATT-ATATAATTA
13501 T-ATAAATTA-ATAATGTAA
1 TAATAAATTATATAAT-T-A
13519 TTATATAATATT-TATTATATTA
1 -TA-ATAA-ATTATA-TA-ATTA
*
13541 TAATAAA-TATTTAATATA
1 TAATAAATTATATAAT-TA
13559 TAATAATATTATATAATTA
1 TAATAA-ATTATATAATTA
*
13578 -AATAAATTAAATATATTA
1 TAATAAATTATATA-ATTA
13596 TAAT
1 TAAT
13600 GATAAACATT
Statistics
Matches: 80, Mismatches: 4, Indels: 31
0.70 0.03 0.27
Matches are distributed among these distances:
16 4 0.05
17 11 0.14
18 26 0.32
19 11 0.14
20 12 0.15
21 6 0.08
22 5 0.06
23 3 0.04
24 2 0.03
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (18 bp):
TAATAAATTATATAATTA
Found at i:14647 original size:25 final size:25
Alignment explanation
Indices: 14603--14650 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14593 TTAAGGATAG
**
14603 ATTTATAATTTTTAAGTAAATAATT
1 ATTTATAATTAATAAGTAAATAATT
*
14628 ATTTATAATTAATAATTAAATAA
1 ATTTATAATTAATAAGTAAATAA
14651 ATAGCTTGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (25 bp):
ATTTATAATTAATAAGTAAATAATT
Found at i:15008 original size:45 final size:48
Alignment explanation
Indices: 14954--15049 Score: 108
Period size: 47 Copynumber: 2.1 Consensus size: 48
14944 ATTTATTAAA
* * *
14954 ATAACTAATAAATTATA-TT-CGATATATTAAACTAATATATAAAA-T
1 ATAACTAATAAACTATAGTTACAATATATAAAACTAATATATAAAACT
* * * *
14999 ATAATTAATATACTATAGTTATAATATATAAAATTAATATATAAAACT
1 ATAACTAATAAACTATAGTTACAATATATAAAACTAATATATAAAACT
15047 ATA
1 ATA
15050 TATGATATTA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
45 14 0.34
46 2 0.05
47 21 0.51
48 4 0.10
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (48 bp):
ATAACTAATAAACTATAGTTACAATATATAAAACTAATATATAAAACT
Found at i:15036 original size:13 final size:13
Alignment explanation
Indices: 15020--15044 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15010 ACTATAGTTA
15020 TAATATATAAAAT
1 TAATATATAAAAT
15033 TAATATATAAAA
1 TAATATATAAAA
15045 CTATATATGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TAATATATAAAAT
Found at i:15579 original size:19 final size:20
Alignment explanation
Indices: 15543--15585 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
15533 TATTAATAGC
15543 ATTTTAAATTAATAACAATT
1 ATTTTAAATTAATAACAATT
*
15563 ATTTTAAA-TATTAACAATT
1 ATTTTAAATTAATAACAATT
15582 ATTT
1 ATTT
15586 ATATTTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTTAAATTAATAACAATT
Found at i:15799 original size:26 final size:25
Alignment explanation
Indices: 15747--15799 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
15737 CTACTCAGCC
*
15747 ATTATTATTAATATTAATAATTCAAT
1 ATTATTATTAATATTAAT-ATTAAAT
15773 ATTATTATTAAAATATTAAT-TTAAAT
1 ATTATTATT--AATATTAATATTAAAT
15799 A
1 A
15800 ATTAATAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 15 0.62
28 9 0.38
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTATTATTAATATTAATATTAAAT
Found at i:15915 original size:27 final size:25
Alignment explanation
Indices: 15885--15938 Score: 63
Period size: 27 Copynumber: 2.1 Consensus size: 25
15875 TATTAATTCA
15885 TTATATTATAATAAAATAATATACTTT
1 TTATATTATAATAAAATAAT-TA-TTT
* * *
15912 TTATTTTGTCATAAAATAATTATTT
1 TTATATTATAATAAAATAATTATTT
15937 TT
1 TT
15939 GTTAATATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.21
26 2 0.08
27 17 0.71
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (25 bp):
TTATATTATAATAAAATAATTATTT
Found at i:16319 original size:22 final size:22
Alignment explanation
Indices: 16289--16333 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
16279 ATAGATTAAC
* **
16289 TAAATTATATTTTTAAATATAA
1 TAAAATATATTTAAAAATATAA
16311 TAAAATATATTTAAAAATATAA
1 TAAAATATATTTAAAAATATAA
16333 T
1 T
16334 TATTATAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TAAAATATATTTAAAAATATAA
Found at i:16368 original size:28 final size:27
Alignment explanation
Indices: 16293--16369 Score: 73
Period size: 28 Copynumber: 2.7 Consensus size: 27
16283 ATTAACTAAA
*
16293 TTATATTTTTAAATATAATAAAATATATT
1 TTATA-TTTTAATTAT-ATAAAATATATT
* * * *
16322 TAAAAATATAATTATTATAAAATATATTT
1 TTATATTTTAATTA-TATAAAATATA-TT
16351 TTATATTTTAATTATATAA
1 TTATATTTTAATTATATAA
16370 TTAAAAAATA
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
28 21 0.57
29 16 0.43
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TTATATTTTAATTATATAAAATATATT
Found at i:16381 original size:19 final size:19
Alignment explanation
Indices: 16359--16397 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
16349 TTTTATATTT
*
16359 TAATTATATAATTAAA-AAA
1 TAATT-TATAAATAAATAAA
16378 TAATTTATAAATAAATAAA
1 TAATTTATAAATAAATAAA
16397 T
1 T
16398 TTTATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TAATTTATAAATAAATAAA
Found at i:16595 original size:26 final size:27
Alignment explanation
Indices: 16566--16625 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
16556 TTATATTAGA
* *
16566 TAATATAATT-TTTATATATTTAAAAT
1 TAATATAATTCATTATATAATTAAAAT
*
16592 TAAT-TAATTCATTATATAATTAATAT
1 TAATATAATTCATTATATAATTAAAAT
*
16618 TATTATAA
1 TAATATAA
16626 CTAAATAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 5 0.18
26 20 0.71
27 3 0.11
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (27 bp):
TAATATAATTCATTATATAATTAAAAT
Found at i:17633 original size:16 final size:16
Alignment explanation
Indices: 17597--17659 Score: 62
Period size: 16 Copynumber: 4.0 Consensus size: 16
17587 AAAATTATTT
17597 TAATAT-TTAA-AATA
1 TAATATGTTAATAATA
*
17611 TTAAATATGTTATTAATA
1 -T-AATATGTTAATAATA
17629 TAATAT-TTAATAATA
1 TAATATGTTAATAATA
17644 TAA-ATAGTTAATAATA
1 TAATAT-GTTAATAATA
17660 AATTAAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
14 2 0.05
15 12 0.29
16 19 0.46
17 4 0.10
18 4 0.10
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
TAATATGTTAATAATA
Found at i:17635 original size:32 final size:31
Alignment explanation
Indices: 17597--17659 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 31
17587 AAAATTATTT
*
17597 TAATATTTAA-AATATTAAATATGTTATTAATA
1 TAATATTTAATAATA-TAAATA-GTTAATAATA
17629 TAATATTTAATAATATAAATAGTTAATAATA
1 TAATATTTAATAATATAAATAGTTAATAATA
17660 AATTAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 9 0.31
32 16 0.55
33 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (31 bp):
TAATATTTAATAATATAAATAGTTAATAATA
Found at i:18092 original size:25 final size:23
Alignment explanation
Indices: 18047--18109 Score: 56
Period size: 25 Copynumber: 2.6 Consensus size: 23
18037 TATAATTAGC
18047 TATT-TTATTATATAATTTAATCAA
1 TATTATTATTAT-TAATTTAAT-AA
*
18071 TATTATTATTATTAGTTATAATAA
1 TATTATTATTATTAATT-TAATAA
*
18095 AATTTATTATATATT
1 TA-TTATTAT-TATT
18110 TTTCAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 11 0.33
25 18 0.55
26 4 0.12
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
TATTATTATTATTAATTTAATAA
Found at i:18137 original size:16 final size:16
Alignment explanation
Indices: 18100--18139 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
18090 AATAAAATTT
18100 ATTA-TATATTTTTCA
1 ATTATTATATTTTTCA
**
18115 AAAATTATATTTTTCA
1 ATTATTATATTTTTCA
18131 ATTATTATA
1 ATTATTATA
18140 ATTTAGTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTATTATATTTTTCA
Found at i:18277 original size:29 final size:27
Alignment explanation
Indices: 18245--18333 Score: 81
Period size: 29 Copynumber: 3.1 Consensus size: 27
18235 AATTAATTGA
*
18245 AATAAATATAAAATAATATTTAATAAATT
1 AATAAA-ATAATATAA-ATTTAATAAATT
* *
18274 AATAACAATTATATAAATTTAATACTATT
1 AATAA-AATAATATAAATTTAATA-AATT
* *
18303 AATTAAATAATATAAGATTT-ATAATTT
1 AATAAAATAATATAA-ATTTAATAAATT
18330 AATA
1 AATA
18334 TATTATATAT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
27 5 0.10
28 20 0.41
29 23 0.47
30 1 0.02
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.40
Consensus pattern (27 bp):
AATAAAATAATATAAATTTAATAAATT
Found at i:18344 original size:19 final size:19
Alignment explanation
Indices: 18281--18344 Score: 55
Period size: 19 Copynumber: 3.5 Consensus size: 19
18271 ATTAATAACA
18281 ATTATATA-AATTTAATACT
1 ATTATATATAATTTAATA-T
*
18300 ATTA-AT-TAA-ATAATAT
1 ATTATATATAATTTAATAT
** *
18316 AAGATTTATAATTTAATAT
1 ATTATATATAATTTAATAT
18335 ATTATATATA
1 ATTATATATA
18345 CAAAATAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
16 3 0.09
17 6 0.18
18 7 0.21
19 17 0.52
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (19 bp):
ATTATATATAATTTAATAT
Found at i:18778 original size:19 final size:16
Alignment explanation
Indices: 18755--18800 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 16
18745 ATTAATTTAT
18755 TATTAATTAGTATAATTA
1 TATTAATTA-TA-AATTA
18773 TAATTAATTATAAA-TA
1 T-ATTAATTATAAATTA
18789 TATTAATTATAA
1 TATTAATTATAA
18801 TATACTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 11 0.41
16 3 0.11
17 2 0.07
18 3 0.11
19 8 0.30
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
TATTAATTATAAATTA
Found at i:18869 original size:22 final size:22
Alignment explanation
Indices: 18844--18885 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
18834 ACTAATTAGT
*
18844 TTTAATTTATTTAA-TAATATTA
1 TTTAAATTA-TTAATTAATATTA
18866 TTTAAATTATTAATTAATAT
1 TTTAAATTATTAATTAATAT
18886 ATTGATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTAAATTATTAATTAATATTA
Found at i:18876 original size:12 final size:13
Alignment explanation
Indices: 18846--18930 Score: 54
Period size: 12 Copynumber: 6.6 Consensus size: 13
18836 TAATTAGTTT
18846 TAAT-TTATTTAA
1 TAATATTATTTAA
18858 TAATATTATTTAA
1 TAATATTATTTAA
* *
18871 -ATTATTAATTAA
1 TAATATTATTTAA
18883 T-ATATTGA-TTAA
1 TAATATT-ATTTAA
* *
18895 TATTATTA-ATAA
1 TAATATTATTTAA
*
18907 TAAATATTAATATTAT
1 T-AATATT-AT-TTAA
18923 TAATATTA
1 TAATATTA
18931 ATAACTATTA
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
12 28 0.49
13 18 0.32
14 2 0.04
15 6 0.11
16 3 0.05
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (13 bp):
TAATATTATTTAA
Found at i:18898 original size:22 final size:21
Alignment explanation
Indices: 18873--18933 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 21
18863 TTATTTAAAT
*
18873 TATTAATTAATAT-ATTGATTAA
1 TATT-ATTAATATAAAT-ATTAA
18895 TATTATTAATAATAAATATTAA
1 TATTATTAAT-ATAAATATTAA
*
18917 TATTATTAATATTAATA
1 TATTATTAATATAAATA
18934 ACTATTAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 12 0.34
22 21 0.60
23 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTATTAATATAAATATTAA
Found at i:18907 original size:28 final size:25
Alignment explanation
Indices: 18854--18940 Score: 69
Period size: 22 Copynumber: 3.5 Consensus size: 25
18844 TTTAATTTAT
*
18854 TTAATAATATT-AT-TTAAATTATTAA
1 TTAATAATATTAATATT--ATTAATAA
18879 TTAATATATTGATTAATATTATTAATAA
1 TTAATA-A-T-ATTAATATTATTAATAA
18907 -T-A-AATATTAATATTATTAAT-A
1 TTAATAATATTAATATTATTAATAA
18928 TTAATAACTATTA
1 TTAATAA-TATTA
18941 GTAATAAATA
Statistics
Matches: 52, Mismatches: 1, Indels: 18
0.73 0.01 0.25
Matches are distributed among these distances:
21 1 0.02
22 16 0.31
23 2 0.04
24 3 0.06
25 12 0.23
26 2 0.04
27 2 0.04
28 10 0.19
29 2 0.04
30 2 0.04
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (25 bp):
TTAATAATATTAATATTATTAATAA
Found at i:18926 original size:19 final size:20
Alignment explanation
Indices: 18898--18951 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
18888 TGATTAATAT
18898 TATTAATAATAAATATTAA-
1 TATTAATAATAAATATTAAC
* * *
18917 TATTATTAAT-ATTAATAAC
1 TATTAATAATAAATATTAAC
*
18936 TATTAGTAATAAATAT
1 TATTAATAATAAATAT
18952 GATATAATAA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 6 0.22
19 18 0.67
20 3 0.11
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
TATTAATAATAAATATTAAC
Found at i:19085 original size:25 final size:26
Alignment explanation
Indices: 19035--19085 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
19025 TACTTGTTTA
* *
19035 TTTATTATAATATAATAACTAGATAT
1 TTTATTATAACATAATAAATAGATAT
19061 TTTA-TATAACATAATATAATA-ATAT
1 TTTATTATAACATAATA-AATAGATAT
19086 ATATTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (26 bp):
TTTATTATAACATAATAAATAGATAT
Found at i:19250 original size:22 final size:23
Alignment explanation
Indices: 19213--19276 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
19203 GATTTAATGA
*
19213 TAAATATTAAGTTTATTAATTTAAT
1 TAAATATTAA--TTATTAACTTAAT
*
19238 T-AATATTAATTATTTACTTAAT
1 TAAATATTAATTATTAACTTAAT
19260 TAAATATTATATT-TTAA
1 TAAATATTA-ATTATTAA
19277 AATTTATTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 12 0.35
23 10 0.29
24 11 0.32
25 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
TAAATATTAATTATTAACTTAAT
Found at i:21617 original size:14 final size:13
Alignment explanation
Indices: 21580--21627 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
21570 AATTGAGAAG
*
21580 AGAAAAAGAAAAA
1 AGAAAAAGAAATA
*
21593 ATAAAAA-AAATA
1 AGAAAAAGAAATA
21605 AGAAATAAGAAATA
1 AGAAA-AAGAAATA
21619 AGGAAAAAG
1 A-GAAAAAG
21628 GAAAAAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 8 0.28
13 8 0.28
14 9 0.31
15 4 0.14
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (13 bp):
AGAAAAAGAAATA
Found at i:22560 original size:63 final size:63
Alignment explanation
Indices: 22413--22833 Score: 458
Period size: 63 Copynumber: 6.7 Consensus size: 63
22403 CAATGGATGA
* * * *
22413 AATTTGTTTTGGAATGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTG-TAGAAGATAA
1 AATTTGTTCTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAATAG
* ** *
22475 AATTTGTTCTGAAATGGCTAGTGCGGAGAAGCCTATGAATGGTGACCAAGTGATAGAAAATAG
1 AATTTGTTCTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAATAG
* *
22538 AATTTGTTCTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGAGATAGAAGATAG
1 AATTTGTTCTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAATAG
* * * * *
22601 AATTTGTT-TGAAACT-GCTAATGCTAAGAAGCCTGTGAGTGGTGACCAAATAAT-GAAAA-ATG
1 AATTTGTTCTGGAA-TGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAATA-G
* * * * *
22662 AAATTTGTTTTAGAATGGCTAGTGATAAGAAGCCTACGAGTGGTGATCAAGTGATAGAAAATAG
1 -AATTTGTTCTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAATAG
** * * * * * *
22726 AATTTGTTCTGGAATGGCTAGTATTGAGAAGCTTATGAGTGCTAACCAAGTGATAGAATACAG
1 AATTTGTTCTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAATAG
* * * * **
22789 AATTTATTTTGAAACT-GCTAGTGCTAAAAAGCCCGTGAGTGGTGA
1 AATTTGTTCTGGAA-TGGCTAGTGCTAAGAAGCCTATGAGTGGTGA
22834 TGAAATGATG
Statistics
Matches: 298, Mismatches: 52, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
60 1 0.00
61 5 0.02
62 94 0.32
63 190 0.64
64 7 0.02
65 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (63 bp):
AATTTGTTCTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAATAG
Found at i:22568 original size:125 final size:125
Alignment explanation
Indices: 22413--22833 Score: 501
Period size: 125 Copynumber: 3.4 Consensus size: 125
22403 CAATGGATGA
* *
22413 AATTTGTTTTGGAATGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTG-TAGAAGATAAAA
1 AATTTGTTTTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAGATAGAA
* *
22477 TTTGTTCTGAAATGGCTAGTGCGGAGAAGCCTATGAATGGTGACCAAGTGATAGAAAATAG
66 TTTGTTCTGAAATGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAA-AG
* *
22538 AATTTGTTCTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGAGATAGAAGATAGAA
1 AATTTGTTTTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAGATAGAA
* * * * *
22603 TTTGTT-TGAAACT-GCTAATGCTAAGAAGCCTGTGAGTGGTGACCAAATAAT-GAAAAATG
66 TTTGTTCTGAAA-TGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAAA-G
* * * * *
22662 AAATTTGTTTTAGAATGGCTAGTGATAAGAAGCCTACGAGTGGTGATCAAGTGATAGAAAATAGA
1 -AATTTGTTTTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAGATAGA
* ** * * * *
22727 ATTTGTTCTGGAATGGCTAGTATTGAGAAGCTTATGAGTGCTAACCAAGTGATAGAATACAG
65 ATTTGTTCTGAAATGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGATAGAA-AAAG
* * * **
22789 AATTTATTTTGAAACT-GCTAGTGCTAAAAAGCCCGTGAGTGGTGA
1 AATTTGTTTTGGAA-TGGCTAGTGCTAAGAAGCCTATGAGTGGTGA
22834 TGAAATGATG
Statistics
Matches: 249, Mismatches: 38, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
123 1 0.00
124 6 0.02
125 150 0.60
126 85 0.34
127 5 0.02
128 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (125 bp):
AATTTGTTTTGGAATGGCTAGTGCTAAGAAGCCTATGAGTGGTGACCAAGTGATAGAAGATAGAA
TTTGTTCTGAAATGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGATAGAAAAAG
Found at i:22715 original size:188 final size:188
Alignment explanation
Indices: 22429--22863 Score: 552
Period size: 188 Copynumber: 2.3 Consensus size: 188
22419 TTTTGGAATG
* * * * * *
22429 GCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGT-AGAAGATAAAATTTGTTCTGAAATGGC
1 GCTAGTGCTAAGAAGCCTGTGAGTGGTGACCAAATATGA-AAGATGAAATTTGTTTTGAAATGGC
* * *
22493 TAGTGCGGAGAAGCCTATGAATGGTGACCAAGTGATAGAAAATAGAATTTGTTCTGGAATGGCTA
65 TAGTGAGAAGAAGCCTACGAATGGTGACCAAGTGATAGAAAATAGAATTTGTTCTGGAATGGCTA
* * * *
22558 GTGCTAAGAAGCCTATGAGTGGTGACCAAGAGATAGAAGATAGAATTT-GTTTGAAACT
130 GTACTAAGAAGCCTATGAGTGCTAACCAAGAGATAGAAGACAGAATTTAGTTTGAAACT
* *
22616 GCTAATGCTAAGAAGCCTGTGAGTGGTGACCAAATAATGAAAAATGAAATTTGTTTT-AGAATGG
1 GCTAGTGCTAAGAAGCCTGTGAGTGGTGACCAAAT-ATGAAAGATGAAATTTGTTTTGA-AATGG
* * *
22680 CTAGTGATAAGAAGCCTACGAGTGGTGATCAAGTGATAGAAAATAGAATTTGTTCTGGAATGGCT
64 CTAGTGAGAAGAAGCCTACGAATGGTGACCAAGTGATAGAAAATAGAATTTGTTCTGGAATGGCT
* * * * * *
22745 AGTATTGAGAAGCTTATGAGTGCTAACCAAGTGATAGAATACAGAATTTATTTTGAAACT
129 AGTACTAAGAAGCCTATGAGTGCTAACCAAGAGATAGAAGACAGAATTTAGTTTGAAACT
* * ** *
22805 GCTAGTGCTAAAAAGCCCGTGAGTGGTGATGAAATGATGAAGGATGAAATTTGTTTTGA
1 GCTAGTGCTAAGAAGCCTGTGAGTGGTGACCAAAT-ATGAAAGATGAAATTTGTTTTGA
22864 TGGGGACTTG
Statistics
Matches: 211, Mismatches: 32, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
187 32 0.15
188 119 0.56
189 59 0.28
190 1 0.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (188 bp):
GCTAGTGCTAAGAAGCCTGTGAGTGGTGACCAAATATGAAAGATGAAATTTGTTTTGAAATGGCT
AGTGAGAAGAAGCCTACGAATGGTGACCAAGTGATAGAAAATAGAATTTGTTCTGGAATGGCTAG
TACTAAGAAGCCTATGAGTGCTAACCAAGAGATAGAAGACAGAATTTAGTTTGAAACT
Found at i:23220 original size:21 final size:21
Alignment explanation
Indices: 23194--23386 Score: 181
Period size: 21 Copynumber: 8.8 Consensus size: 21
23184 GTGAACCCTC
23194 AAATGAGAATCTTTGAGTCTT
1 AAATGAGAATCTTTGAGTCTT
* *
23215 AAATGAGAATCTTTTAGTATT
1 AAATGAGAATCTTTGAGTCTT
* * *
23236 AAATGAGAATTTTTAAAAAATCTT
1 AAATGAGAATCTTT---GAGTCTT
*
23260 CAAATGAGAATCTTTGAGTTTT
1 -AAATGAGAATCTTTGAGTCTT
23282 AAATGAGAATCTTTGAGTCTT
1 AAATGAGAATCTTTGAGTCTT
* * *
23303 AAATGAAAATCTTTAAAAAATCTT
1 AAATGAGAATCTTT---GAGTCTT
* *
23327 AAAATAAAAATCTTTGAGTCTTT
1 -AAATGAGAATCTTTGAGTC-TT
23350 AAATGAGAATCTTTGAGT-TT
1 AAATGAGAATCTTTGAGTCTT
*
23370 CAAATGAGAATATTTGA
1 -AAATGAGAATCTTTGA
23387 AAAATGAAAC
Statistics
Matches: 142, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.01
21 80 0.56
22 23 0.16
23 2 0.01
24 9 0.06
25 26 0.18
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (21 bp):
AAATGAGAATCTTTGAGTCTT
Found at i:23268 original size:67 final size:66
Alignment explanation
Indices: 23192--23391 Score: 283
Period size: 67 Copynumber: 3.0 Consensus size: 66
23182 TTGTGAACCC
* *
23192 TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTTAGTATTAAATGAGAATTTTTAAAAAAT
1 TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTGAGT-TTAAATGAGAATATTTAAAAAAT
23257 CT
65 CT
* * *
23259 TCAAATGAGAATCTTTGAGTTTTAAATGAGAATCTTTGAGTCTTAAATGAAAATCTTTAAAAAAT
1 TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTGAGT-TTAAATGAGAATATTTAAAAAAT
23324 CT
65 CT
* * * *
23326 TAAAATAAAAATCTTTGAGTCTTTAAATGAGAATCTTTGAGTTTCAAATGAGAATATTTGAAAAA
1 TCAAATGAGAATCTTTGAGTC-TTAAATGAGAATCTTTGAGTTT-AAATGAGAATATTTAAAAAA
23391 T
64 T
23392 GAAACCATGA
Statistics
Matches: 119, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
67 81 0.68
68 38 0.32
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (66 bp):
TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTGAGTTTAAATGAGAATATTTAAAAAATC
T
Found at i:23552 original size:47 final size:43
Alignment explanation
Indices: 23420--23553 Score: 128
Period size: 43 Copynumber: 3.0 Consensus size: 43
23410 AGATGTGAAT
* *
23420 ACTCGAATGAGAAGCTTTGAACTTTTGGATGTGAGTCTCCAAA
1 ACTCGAATAAGAAGCTTTGAACTTTTGGATGTGAATCTCCAAA
* * * * *
23463 ATTCAAATGAAAAAG-TTTAAACTTTTTGGATGTGAA-CCCCAAA
1 ACTCGAAT-AAGAAGCTTTGAAC-TTTTGGATGTGAATCTCCAAA
*
23506 TTTACCTCGAATAAGAAGCTTTGAACTTTTGGATGTAAATCTCCAAA
1 ---A-CTCGAATAAGAAGCTTTGAACTTTTGGATGTGAATCTCCAAA
23553 A
1 A
23554 TTCAAATGCA
Statistics
Matches: 70, Mismatches: 13, Indels: 15
0.71 0.13 0.15
Matches are distributed among these distances:
43 18 0.26
44 17 0.24
46 18 0.26
47 17 0.24
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (43 bp):
ACTCGAATAAGAAGCTTTGAACTTTTGGATGTGAATCTCCAAA
Found at i:23877 original size:43 final size:40
Alignment explanation
Indices: 23802--23891 Score: 110
Period size: 43 Copynumber: 2.2 Consensus size: 40
23792 GATTGTCAAT
* *
23802 GAGCCTTTATTTTTCAAAGTTGTTATGCCTCTATTTAGAG
1 GAGCCTTTATTTTTCAAAGTCGTTATGCCTCTATTTAAAG
*
23842 GAGCCATTTATTTTTCTCAAAGTCGTTGA-GTCTCTATTTAAAG
1 GAGCC-TTTA-TTTT-TCAAAGTCGTT-ATGCCTCTATTTAAAG
23885 GAGCCTT
1 GAGCCTT
23892 GTTTACTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
40 5 0.12
41 4 0.09
42 6 0.14
43 27 0.63
44 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (40 bp):
GAGCCTTTATTTTTCAAAGTCGTTATGCCTCTATTTAAAG
Found at i:24153 original size:12 final size:11
Alignment explanation
Indices: 24136--24193 Score: 62
Period size: 12 Copynumber: 4.9 Consensus size: 11
24126 TTTAATGGGC
24136 TTTATTTTTTAT
1 TTTA-TTTTTAT
*
24148 TTTATTCTTAT
1 TTTATTTTTAT
24159 TCTTATTTTTAT
1 T-TTATTTTTAT
*
24171 TTTGATTTTGAT
1 TTT-ATTTTTAT
24183 TTTCATTTTTA
1 TTT-ATTTTTA
24194 GATAATAGGA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
11 9 0.23
12 30 0.77
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.74
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:24172 original size:6 final size:6
Alignment explanation
Indices: 24136--24193 Score: 55
Period size: 6 Copynumber: 9.7 Consensus size: 6
24126 TTTAATGGGC
* * * *
24136 TTTATT TTT-TAT TTTATT CTTATT CTTATT TTTATT TTGATT TTGATT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
24184 TTCATT TTTA
1 TTTATT TTTA
24194 GATAATAGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
5 1 0.02
6 43 0.96
7 1 0.02
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:25221 original size:16 final size:16
Alignment explanation
Indices: 25173--25330 Score: 55
Period size: 16 Copynumber: 10.1 Consensus size: 16
25163 TATTTATACA
25173 ATATATATTAATCTAA-
1 ATATATATTAAT-TAAT
**
25189 ATAT-TA-TAATTTTT
1 ATATATATTAATTAAT
25203 ATATATATTAATTAAT
1 ATATATATTAATTAAT
* * *
25219 ATATTTA-TGATAAAT
1 ATATATATTAATTAAT
*
25234 ATATGATA-TAATTACT
1 ATAT-ATATTAATTAAT
* * * *
25250 ATTATAAAGTATTTATT
1 A-TATATATTAATTAAT
* *
25267 ATATTTAATAA-TAAT
1 ATATATATTAATTAAT
*
25282 AT-TATTATTAATCAAT
1 ATATA-TATTAATTAAT
* * *
25298 A-ATAAAATAA-TAAA
1 ATATATATTAATTAAT
*
25312 ATTATCTATTAATTAAT
1 A-TATATATTAATTAAT
25329 AT
1 AT
25331 TAAATTTTAA
Statistics
Matches: 100, Mismatches: 30, Indels: 24
0.65 0.19 0.16
Matches are distributed among these distances:
13 1 0.01
14 12 0.12
15 28 0.28
16 45 0.45
17 14 0.14
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (16 bp):
ATATATATTAATTAAT
Found at i:25290 original size:19 final size:18
Alignment explanation
Indices: 25263--25301 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
25253 ATAAAGTATT
25263 TATTATATTTAAT-AATAA
1 TATTATA-TTAATCAATAA
25281 TATTATTATTAATCAATAA
1 TATTA-TATTAATCAATAA
25300 TA
1 TA
25302 AAATAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTATATTAATCAATAA
Found at i:25308 original size:30 final size:31
Alignment explanation
Indices: 25273--25334 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
25263 TATTATATTT
*
25273 AATAATAATATTAT-TATTAATCAATAATAA
1 AATAATAAAATTATCTATTAATCAATAATAA
* *
25303 AATAATAAAATTATCTATTAATTAATATTAA
1 AATAATAAAATTATCTATTAATCAATAATAA
25334 A
1 A
25335 TTTTAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.46
31 15 0.54
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.40
Consensus pattern (31 bp):
AATAATAAAATTATCTATTAATCAATAATAA
Found at i:25993 original size:55 final size:57
Alignment explanation
Indices: 25817--26032 Score: 223
Period size: 55 Copynumber: 3.9 Consensus size: 57
25807 AAATATATCT
* * * * *
25817 AATTATTTCACTATTTGGGTCAAATTAG-AAGTATTTTC----TCTTTTGAATTTCTA
1 AATT-TTTCACCATTTGGGTCAATTTAGAAATTATTTTCTTATTTTTTTTAATTTCTA
* * * *
25870 AATTTTCCACCATTTGGG-CATATTTAGAAATTCTCTTTATTTATTTTTTTTTATTTCTA
1 AATTTTTCACCATTTGGGTCA-ATTTAGAAATTAT-TTT-CTTATTTTTTTTAATTTCTA
25929 AATTTTTCACCATTTGGGTCAATTTAGAAA-TATTTTCTT-TTTTTTTTAATTTCTA
1 AATTTTTCACCATTTGGGTCAATTTAGAAATTATTTTCTTATTTTTTTTAATTTCTA
* * * *
25984 AATTTTTCACCATTTGGGCCTATTTAGAAATTCTTTTTTTATTTTTTTT
1 AATTTTTCACCATTTGGGTCAATTTAGAAATTATTTTCTTATTTTTTTT
26033 TGAAGGGGAA
Statistics
Matches: 135, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
51 2 0.01
52 17 0.13
53 8 0.06
54 3 0.02
55 43 0.32
56 9 0.07
57 11 0.08
58 2 0.01
59 38 0.28
60 2 0.01
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.55
Consensus pattern (57 bp):
AATTTTTCACCATTTGGGTCAATTTAGAAATTATTTTCTTATTTTTTTTAATTTCTA
Found at i:26008 original size:114 final size:110
Alignment explanation
Indices: 25817--26033 Score: 319
Period size: 114 Copynumber: 1.9 Consensus size: 110
25807 AAATATATCT
* *
25817 AATTATTTCACTATTTGGGTCAAATTAGAAGTATTTTCTCTTTTGAATTTCTAAATTTTCCACCA
1 AATTATTTCACCATTTGGGTCAAATTAGAAATATTTTCTCTTTTGAATTTCTAAATTTTCCACCA
25882 TTTGGGCATATTTAGAAATTCTCTTTATTTATTTTTTTTTATTTCTA
66 TTTGGGCATATTTAGAAATTCT-TTT-TTTATTTTTTTTTATTTCTA
* * * *
25929 AATT-TTTCACCATTTGGGTCAATTTAGAAATATTTTCTTTTTTTTTTAATTTCTAAATTTTTCA
1 AATTATTTCACCATTTGGGTCAAATTAGAAATATTTTC---TCTTTTGAATTTCTAAATTTTCCA
*
25993 CCATTTGGGCCTATTTAGAAATTCTTTTTTTATTTTTTTTT
63 CCATTTGGGCATATTTAGAAATTCTTTTTTTATTTTTTTTT
26034 GAAGGGGAAT
Statistics
Matches: 95, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
111 30 0.32
112 17 0.18
113 3 0.03
114 45 0.47
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.55
Consensus pattern (110 bp):
AATTATTTCACCATTTGGGTCAAATTAGAAATATTTTCTCTTTTGAATTTCTAAATTTTCCACCA
TTTGGGCATATTTAGAAATTCTTTTTTTATTTTTTTTTATTTCTA
Found at i:26603 original size:25 final size:25
Alignment explanation
Indices: 26557--26605 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
26547 ATATTAATGA
* *
26557 ATATAAAATTATAATTATATTAATC
1 ATATAAAATTATAATAAAATTAATC
* *
26582 ATATAATATTCTAATAAAATTAAT
1 ATATAAAATTATAATAAAATTAAT
26606 TATTAGTAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
ATATAAAATTATAATAAAATTAATC
Found at i:26617 original size:19 final size:19
Alignment explanation
Indices: 26593--26635 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
26583 TATAATATTC
26593 TAATAAAATTAATTATTAG
1 TAATAAAATTAATTATTAG
26612 TAATAAAATTAATTATTAG
1 TAATAAAATTAATTATTAG
26631 TAATA
1 TAATA
26636 TATTATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
TAATAAAATTAATTATTAG
Found at i:26686 original size:19 final size:20
Alignment explanation
Indices: 26600--26730 Score: 80
Period size: 19 Copynumber: 6.7 Consensus size: 20
26590 TTCTAATAAA
* * *
26600 ATTAATTATTAGTAATAA-A
1 ATTAATTATAATTAATAATT
* *
26619 ATTAATTATTAGTAATATATT
1 ATTAATTATAATTAATA-ATT
* *
26640 ATTAATAAATATTTAAATAA-T
1 ATTAAT-TATAATT-AATAATT
*
26661 GTT-ATTATAATTAATAATT
1 ATTAATTATAATTAATAATT
26680 A-TAATTAATAA--AATAATT
1 ATTAATT-ATAATTAATAATT
26698 ATTAATT-T-ATTATATAATT
1 ATTAATTATAATTA-ATAATT
*
26717 ATTACTTATAATTA
1 ATTAATTATAATTA
26731 CTTATAATTA
Statistics
Matches: 89, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
16 1 0.01
17 1 0.01
18 15 0.17
19 43 0.48
20 8 0.09
21 13 0.15
22 4 0.04
23 4 0.04
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTAATTATAATTAATAATT
Found at i:26876 original size:22 final size:23
Alignment explanation
Indices: 26849--26929 Score: 84
Period size: 22 Copynumber: 3.7 Consensus size: 23
26839 TATTATTGTA
*
26849 TAATAATTAAT-ATTAATATTAT
1 TAATAATTAATAATTAATATAAT
26871 TAATAATT-ATAATT-AT-TAAT
1 TAATAATTAATAATTAATATAAT
26891 TAATAATTTAATAATTTAATATAAT
1 TAATAA-TTAATAA-TTAATATAAT
*
26916 AAAT-A-TAATAATTA
1 TAATAATTAATAATTA
26930 TTTATTTATA
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
20 9 0.18
21 9 0.18
22 21 0.41
23 2 0.04
24 3 0.06
25 7 0.14
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TAATAATTAATAATTAATATAAT
Found at i:27364 original size:21 final size:20
Alignment explanation
Indices: 27308--27365 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
27298 AATATTTGTT
27308 ATTA-ATTAATAATATT-ATA
1 ATTATATTAAT-ATATTAATA
*
27327 ATTATATTTATATTATTAATA
1 ATTATATTAATA-TATTAATA
*
27348 ATTGTAGTTAATATATTA
1 ATTATA-TTAATATATTA
27366 TTTGAATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 5 0.16
20 9 0.28
21 13 0.41
22 5 0.16
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (20 bp):
ATTATATTAATATATTAATA
Found at i:27410 original size:14 final size:14
Alignment explanation
Indices: 27391--27431 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
27381 TAATATAATT
27391 TATAATAATTATAA
1 TATAATAATTATAA
27405 TATAATAATTATTAA
1 TATAATAATTA-TAA
27420 TAT-ATAATTATA
1 TATAATAATTATA
27432 TTTATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.08
14 18 0.69
15 6 0.23
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TATAATAATTATAA
Found at i:28897 original size:13 final size:13
Alignment explanation
Indices: 28879--28903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28869 ATGTTATTGA
28879 TATAATTATTAAT
1 TATAATTATTAAT
28892 TATAATTATTAA
1 TATAATTATTAA
28904 AATTTAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATAATTATTAAT
Found at i:29814 original size:6 final size:6
Alignment explanation
Indices: 29803--29842 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
29793 TCGATATTGT
* * *
29803 TTAATA TTAATA CTAATT TTAATA TTGATA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
29843 GCCTTTTATT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:32023 original size:14 final size:13
Alignment explanation
Indices: 32003--32051 Score: 59
Period size: 14 Copynumber: 3.8 Consensus size: 13
31993 AAAAAATAAA
32003 TATAATTATATAT
1 TATAATTATATAT
32016 TAATAATTATTATAT
1 T-ATAATTA-TATAT
32031 TATAATTAT-TA-
1 TATAATTATATAT
32042 TA-AATTATAT
1 TATAATTATAT
32052 TAAATAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
10 6 0.18
11 3 0.09
12 2 0.06
13 2 0.06
14 14 0.42
15 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TATAATTATATAT
Found at i:32093 original size:21 final size:20
Alignment explanation
Indices: 32068--32121 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
32058 AAATATTCAA
*
32068 ATAATATATTAACTACAATT
1 ATAATATATTAAATACAATT
*
32088 ATTAATA-ATATAAATATAATT
1 A-TAATATAT-TAAATACAATT
32109 ATAATATTATTAA
1 ATAATA-TATTAA
32122 TTAATAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 8 0.29
21 18 0.64
22 2 0.07
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (20 bp):
ATAATATATTAAATACAATT
Found at i:32135 original size:16 final size:16
Alignment explanation
Indices: 32082--32143 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 16
32072 TATATTAACT
32082 ACAATTATTAA-TAATA
1 ACAA-TATTAATTAATA
32098 TA-AATA-TAATT-ATA
1 -ACAATATTAATTAATA
* *
32112 ATATTATTAATTAATA
1 ACAATATTAATTAATA
*
32128 ACAATATTATTTAATA
1 ACAATATTAATTAATA
32144 TTTTAATAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 8 0.22
16 18 0.49
17 1 0.03
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
ACAATATTAATTAATA
Found at i:32684 original size:9 final size:9
Alignment explanation
Indices: 32636--32694 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
32626 ATTATAAGTA
32636 ATAATTA-T
1 ATAATTATT
*
32644 ATAATAAATT
1 ATAAT-TATT
32654 AATAATTATT
1 -ATAATTATT
*
32664 -TTATTAATT
1 ATAATT-ATT
32673 ATAATTATT
1 ATAATTATT
*
32682 ATAATTATA
1 ATAATTATT
32691 ATAA
1 ATAA
32695 CATTATTTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 9 0.22
9 19 0.46
10 8 0.20
11 5 0.12
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (9 bp):
ATAATTATT
Found at i:32688 original size:19 final size:20
Alignment explanation
Indices: 32634--32737 Score: 76
Period size: 19 Copynumber: 5.2 Consensus size: 20
32624 TAATTATAAG
*
32634 TAATAATTA-TATAATAAAT
1 TAATAATTATTATAATTAAT
*
32653 TAATAATTATT-TTATTAAT
1 TAATAATTATTATAATTAAT
32672 T-ATAATTATTATAATT-A-
1 TAATAATTATTATAATTAAT
* *
32689 TAATAACATTATTTAAATATTTAT
1 TAAT-A-ATTA-TTATA-ATTAAT
32713 TAATAATATATTACTAA-TAAT
1 TAATAAT-TATTA-TAATTAAT
32734 TAAT
1 TAAT
32738 TTTATTAGAA
Statistics
Matches: 68, Mismatches: 6, Indels: 20
0.72 0.06 0.21
Matches are distributed among these distances:
17 1 0.01
18 12 0.18
19 21 0.31
20 5 0.07
21 11 0.16
22 9 0.13
23 5 0.07
24 4 0.06
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TAATAATTATTATAATTAAT
Found at i:32762 original size:25 final size:25
Alignment explanation
Indices: 32732--32792 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
32722 ATTACTAATA
* *
32732 ATTAATTTTATTAGAATATTATATG
1 ATTAATATAATTAGAATATTATATG
* * *
32757 ATTAATATAATTATAATTTTATATTC
1 ATTAATATAATTAGAATATTATA-TG
32783 ATTAATATAA
1 ATTAATATAA
32793 AAGTTTATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 19 0.63
26 11 0.37
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (25 bp):
ATTAATATAATTAGAATATTATATG
Found at i:33376 original size:55 final size:54
Alignment explanation
Indices: 33317--33490 Score: 174
Period size: 55 Copynumber: 3.1 Consensus size: 54
33307 CCACTTCAAA
*
33317 AAAAATAAAAAAAGAATTTTTCAATAGGTCCCAAATGGTGAAAAATTTAGAAATT
1 AAAAATAAAAAAAGAATTTTTCAATATG-CCCAAATGGTGAAAAATTTAGAAATT
* *
33372 AAAAA-AAAAAGAA-AATATTTCTAA-ATTGACCCAAATGGTGAAAAATTTAGAAATAAAA
1 AAAAATAAAAA-AAGAATTTTTC-AATA-TG-CCCAAATGGTGAAAAATTTAGAAAT---T
* * *
33430 AAAAATAAATAAAGAGAATTTCTAAATATGCCCAAATGGTGGAAAATTTAGAAATT
1 AAAAATAAA-AAA-AGAATTTTTCAATATGCCCAAATGGTGAAAAATTTAGAAATT
*
33486 CAAAA
1 AAAAA
33491 GAGAAAATAC
Statistics
Matches: 98, Mismatches: 10, Indels: 21
0.76 0.08 0.16
Matches are distributed among these distances:
54 13 0.13
55 35 0.36
56 4 0.04
58 5 0.05
59 28 0.29
60 7 0.07
61 6 0.06
ACGTcount: A:0.56, C:0.07, G:0.12, T:0.25
Consensus pattern (54 bp):
AAAAATAAAAAAAGAATTTTTCAATATGCCCAAATGGTGAAAAATTTAGAAATT
Found at i:33434 original size:114 final size:112
Alignment explanation
Indices: 33314--33530 Score: 296
Period size: 111 Copynumber: 1.9 Consensus size: 112
33304 TTCCCACTTC
* *
33314 AAAAAAAATAAA-AAA-AGAATTTTTCAATAGGTCCCAAATGGTGAAAAATTTAGAAATTAAAAA
1 AAAAAAAATAAATAAAGAGAATTTCTAAATAGG-CCCAAATGGTGAAAAATTTAGAAATT---AA
* *
33377 AAAAAGAAAATATTTCTAAATTGACCCAAATGGTGAAA-AATTTAGAAATA
62 AAAAAGAAAATACTTCTAAATTGACCCAAATAGTGAAATAATTTAGAAATA
* * * *
33427 AAAAAAAATAAATAAAGAGAATTTCTAAATATGCCCAAATGGTGGAAAATTTAGAAATTCAAAAG
1 AAAAAAAATAAATAAAGAGAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTAAAAAA
*
33492 AGAAAATACTTCTAATTTGACCCAAATAGTGAAATAATT
66 AGAAAATACTTCTAAATTGACCCAAATAGTGAAATAATT
33531 AGATATATTT
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
111 35 0.38
112 4 0.04
113 12 0.13
114 28 0.30
115 13 0.14
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.25
Consensus pattern (112 bp):
AAAAAAAATAAATAAAGAGAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTAAAAAA
AGAAAATACTTCTAAATTGACCCAAATAGTGAAATAATTTAGAAATA
Found at i:33480 original size:59 final size:57
Alignment explanation
Indices: 33314--33484 Score: 215
Period size: 59 Copynumber: 3.0 Consensus size: 57
33304 TTCCCACTTC
* * * *
33314 AAAAAAAATAAAAAAAGAATTTTTCAATAGGTCCCAAATGGTGAAAAATTTAGAAATT
1 AAAAAAAATAAAAAAAGAATTTCTAAATATGACCCAAATGGTGAAAAATTTAGAAA-T
* *
33372 AAAAAAAA-AAGAAAA-TATTTCTAAAT-TGACCCAAATGGTGAAAAATTTAGAAAT
1 AAAAAAAATAAAAAAAGAATTTCTAAATATGACCCAAATGGTGAAAAATTTAGAAAT
*
33426 AAAAAAAAATAAATAAAGAGAATTTCTAAATATG-CCCAAATGGTGGAAAATTTAGAAAT
1 -AAAAAAAATAAA-AAA-AGAATTTCTAAATATGACCCAAATGGTGAAAAATTTAGAAAT
33485 TCAAAAGAGA
Statistics
Matches: 98, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
54 1 0.01
55 33 0.34
56 10 0.10
57 9 0.09
58 9 0.09
59 34 0.35
60 2 0.02
ACGTcount: A:0.56, C:0.07, G:0.12, T:0.25
Consensus pattern (57 bp):
AAAAAAAATAAAAAAAGAATTTCTAAATATGACCCAAATGGTGAAAAATTTAGAAAT
Found at i:34081 original size:20 final size:19
Alignment explanation
Indices: 34046--34085 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
34036 TTTTATTATT
34046 TTATTATTGATTAATAATAA
1 TTATTATTGATTAAT-ATAA
34066 TTATTATT-ATTAAATATAA
1 TTATTATTGATT-AATATAA
34085 T
1 T
34086 AAATACTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
TTATTATTGATTAATATAA
Found at i:35857 original size:44 final size:42
Alignment explanation
Indices: 35719--35858 Score: 122
Period size: 43 Copynumber: 3.1 Consensus size: 42
35709 AAAGATTTGC
*
35719 ATTTGAATTTTGGAGATTTACATCCAAAAGTTCAAAGCTTCTT
1 ATTTGAATTTTGGAGATTCACATCCAAAAGTTCAAAGCTT-TT
* * * *
35762 ATTCGAGGTAAATTTGG-GGTTCACATCCAAAAAGTTTAAA-CTTTTT
1 ATT---TG-AATTTTGGAGATTCACATCC-AAAAGTTCAAAGC-TTTT
*
35808 CATTTGAATTTTGGAGACTCACATCCAAAAGTTCAAAGCTTTAT
1 -ATTTGAATTTTGGAGATTCACATCCAAAAGTTCAAAGCTTT-T
35852 AATTTGA
1 -ATTTGA
35859 GTATTCAATC
Statistics
Matches: 76, Mismatches: 11, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
43 23 0.30
44 18 0.24
46 13 0.17
47 22 0.29
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (42 bp):
ATTTGAATTTTGGAGATTCACATCCAAAAGTTCAAAGCTTTT
Found at i:35979 original size:21 final size:21
Alignment explanation
Indices: 35955--36066 Score: 111
Period size: 21 Copynumber: 5.2 Consensus size: 21
35945 TTAAAGAAAA
35955 TCATTTAAGACTTAAAGATTC
1 TCATTTAAGACTTAAAGATTC
* *
35976 TCATTTAA-AATCAAAGATT-
1 TCATTTAAGACTTAAAGATTC
* *
35995 TCATTTGAAGAATTTTTAAAAATTC
1 TCATTT-AAG-A--CTTAAAGATTC
* *
36020 TCATTTAATACTAAAAGATTC
1 TCATTTAAGACTTAAAGATTC
*
36041 TCATTTAAGATTTAAAGATTC
1 TCATTTAAGACTTAAAGATTC
36062 TCATT
1 TCATT
36067 GAGGGTTAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
19 6 0.08
20 11 0.15
21 39 0.53
22 1 0.01
23 1 0.01
24 9 0.12
25 6 0.08
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (21 bp):
TCATTTAAGACTTAAAGATTC
Found at i:36020 original size:44 final size:42
Alignment explanation
Indices: 35955--36066 Score: 138
Period size: 44 Copynumber: 2.6 Consensus size: 42
35945 TTAAAGAAAA
* *
35955 TCATTTAAGACTTAAAGATTCTCATTTAA-AATCAAAGATT-
1 TCATTTAAGATTTAAAGATTCTCATTTAATAATAAAAGATTC
* *
35995 TCATTTGAAGAATTTTTAAAAATTCTCATTTAATACTAAAAGATTC
1 TCATTT-AAG-A--TTTAAAGATTCTCATTTAATAATAAAAGATTC
36041 TCATTTAAGATTTAAAGATTCTCATT
1 TCATTTAAGATTTAAAGATTCTCATT
36067 GAGGGTTAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
40 6 0.10
41 3 0.05
42 16 0.26
44 18 0.30
45 12 0.20
46 6 0.10
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (42 bp):
TCATTTAAGATTTAAAGATTCTCATTTAATAATAAAAGATTC
Found at i:36548 original size:63 final size:63
Alignment explanation
Indices: 36426--36834 Score: 434
Period size: 63 Copynumber: 6.5 Consensus size: 63
36416 ACCACCCACG
* * * * * * * *
36426 GGCTTCTTAGCACTAG-CAGTTTCAAAATAAATTCTGTATTCTATCACTTGGTTAGCACTCATA
1 GGCTTCTCAGCACTAGCCA-TTCCAGAACAAATTCTATTTTCTATCACTTGGTCACCACTCATA
* ** * *
36489 AGCTTCTCAATACTAGCCATTCCAGAACAAATTCTATTTTCTATCACTTGATCACCACTCGTA
1 GGCTTCTCAGCACTAGCCATTCCAGAACAAATTCTATTTTCTATCACTTGGTCACCACTCATA
* * * * * * *
36552 GGCTTCTTATCACTAGCCATTCTAAAACAAATT-TCATTTT-TCATTATTTGGTCACCACTCACA
1 GGCTTCTCAGCACTAGCCATTCCAGAACAAATTCT-ATTTTCT-ATCACTTGGTCACCACTCATA
* * * * *
36615 GGCTTCTTAGCATTAG-CAGTTTCA-AACAAATTCTATCTTCTATCTCTTGGTCACCACTCATA
1 GGCTTCTCAGCACTAGCCA-TTCCAGAACAAATTCTATTTTCTATCACTTGGTCACCACTCATA
* * * *
36677 GGCTTCTTAGCACTAGCCATTCCAGAACAATTTTTATTTTCTATCACTTGGTCACCATTCATA
1 GGCTTCTCAGCACTAGCCATTCCAGAACAAATTCTATTTTCTATCACTTGGTCACCACTCATA
* * * *
36740 GGCTTCTCCGCACTAGCCATTTCAGAACAAATTTTATCTTCTA-CACTTGGTCACCACTCATA
1 GGCTTCTCAGCACTAGCCATTCCAGAACAAATTCTATTTTCTATCACTTGGTCACCACTCATA
*
36802 GGCTTCTCAGCACTAGCCATTCCAAAACAAATT
1 GGCTTCTCAGCACTAGCCATTCCAGAACAAATT
36835 TCATCCATTG
Statistics
Matches: 289, Mismatches: 49, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
62 100 0.35
63 187 0.65
64 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.35
Consensus pattern (63 bp):
GGCTTCTCAGCACTAGCCATTCCAGAACAAATTCTATTTTCTATCACTTGGTCACCACTCATA
Found at i:36684 original size:125 final size:127
Alignment explanation
Indices: 36426--36838 Score: 491
Period size: 125 Copynumber: 3.3 Consensus size: 127
36416 ACCACCCACG
* * * * * *
36426 GGCTTCTTAGCACTAG-CAGTTTCAAAATAAA-TTC-TGTATTCTATCACTTGGTTAGCACTCAT
1 GGCTTCTTAGCACTAGCCA-TTCCAAAACAAATTTCAT-TTTTCTATCACTTGGTCACCACTCAC
* ** * * * *
36488 AAGCTTCTCAATACTAGCCATTCCAGAACAAATTCTATTTTCTATCACTTGATCACCACTCGTA
64 AGGCTTCTCAGCACTAGCCATTTCAGAACAAATTCTATCTTCTATCACTTGGTCACCACTCATA
* * * *
36552 GGCTTCTTATCACTAGCCATTCTAAAACAAATTTCATTTTTC-ATTATTTGGTCACCACTCACAG
1 GGCTTCTTAGCACTAGCCATTCCAAAACAAATTTCATTTTTCTATCACTTGGTCACCACTCACAG
* * *
36616 GCTTCTTAGCATTAG-CAGTTTCA-AACAAATTCTATCTTCTATCTCTTGGTCACCACTCATA
66 GCTTCTCAGCACTAGCCA-TTTCAGAACAAATTCTATCTTCTATCACTTGGTCACCACTCATA
* * * * *
36677 GGCTTCTTAGCACTAGCCATTCCAGAACAATTTTTA-TTTTCTATCACTTGGTCACCATTCATAG
1 GGCTTCTTAGCACTAGCCATTCCAAAACAAATTTCATTTTTCTATCACTTGGTCACCACTCACAG
* *
36741 GCTTCTCCGCACTAGCCATTTCAGAACAAATTTTATCTTCTA-CACTTGGTCACCACTCATA
66 GCTTCTCAGCACTAGCCATTTCAGAACAAATTCTATCTTCTATCACTTGGTCACCACTCATA
*
36802 GGCTTCTCAGCACTAGCCATTCCAAAACAAATTTCAT
1 GGCTTCTTAGCACTAGCCATTCCAAAACAAATTTCAT
36839 CCATTGACCT
Statistics
Matches: 241, Mismatches: 38, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
124 5 0.02
125 152 0.63
126 74 0.31
127 9 0.04
128 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.35
Consensus pattern (127 bp):
GGCTTCTTAGCACTAGCCATTCCAAAACAAATTTCATTTTTCTATCACTTGGTCACCACTCACAG
GCTTCTCAGCACTAGCCATTTCAGAACAAATTCTATCTTCTATCACTTGGTCACCACTCATA
Found at i:36717 original size:188 final size:189
Alignment explanation
Indices: 36384--36834 Score: 561
Period size: 188 Copynumber: 2.4 Consensus size: 189
36374 CAAGTCCCCA
* * * *
36384 TCAAAACAAATTTCATCCTTCATCATTTCGTCACCACCCACGGGCTTCTTAGCACTAGCAGTTTC
1 TCAAAACAAATTTCATTCTTCATCATTTGGTCACCACTCACAGGCTTCTTAGCACTAGCAGTTTC
* * * * *
36449 AAAATAAATTCTGTATTCTATCACTTGGTTAGCACTCATAAGCTTCTCAATACTAGCCATTCCAG
66 AAAACAAATTCTATATTCTATCACTTGGTCACCACTCATAAGCTTCTCAACACTAGCCATTCCAG
* * *
36514 AACAAATTCTATTTTCTATCACTTGATCACCACTCGTAGGCTTCTTATCACTAGCCA-T
131 AACAAATTCTATTTTCTATCACTTGATCACCACTCATAGGCTTCTCAGCACTAGCCATT
* * *
36572 TCTAAAACAAATTTCATTTTTCATTATTTGGTCACCACTCACAGGCTTCTTAGCATTAGCAGTTT
1 TC-AAAACAAATTTCATTCTTCATCATTTGGTCACCACTCACAGGCTTCTTAGCACTAGCAGTTT
* * * * *
36637 C-AAACAAATTCTATCTTCTATCTCTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCCA
65 CAAAACAAATTCTATATTCTATCACTTGGTCACCACTCATAAGCTTCTCAACACTAGCCATTCCA
* * * * *
36701 GAACAATTTTTATTTTCTATCACTTGGTCACCATTCATAGGCTTCTCCGCACTAGCCATT
130 GAACAAATTCTATTTTCTATCACTTGATCACCACTCATAGGCTTCTCAGCACTAGCCATT
* * * * *
36761 TCAGAACAAATTTTA-TCTTC-TACACTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCA-TT
1 TCAAAACAAATTTCATTCTTCAT-CATTTGGTCACCACTCACAGGCTTCTTAGCACTAG-CAGTT
*
36823 CCAAAACAAATT
64 TCAAAACAAATT
36835 TCATCCATTG
Statistics
Matches: 224, Mismatches: 34, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
186 1 0.00
187 37 0.17
188 127 0.57
189 59 0.26
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.34
Consensus pattern (189 bp):
TCAAAACAAATTTCATTCTTCATCATTTGGTCACCACTCACAGGCTTCTTAGCACTAGCAGTTTC
AAAACAAATTCTATATTCTATCACTTGGTCACCACTCATAAGCTTCTCAACACTAGCCATTCCAG
AACAAATTCTATTTTCTATCACTTGATCACCACTCATAGGCTTCTCAGCACTAGCCATT
Found at i:37645 original size:27 final size:27
Alignment explanation
Indices: 37606--37657 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
37596 CATTATTTCA
*
37606 TTTTTTTCCTTTTTCCTTTTT-TCTTAT
1 TTTTTTTACTTTTT-CTTTTTCTCTTAT
*
37633 TTTTTTTATTTTTTCTTTTTCTCTT
1 TTTTTTTACTTTTTCTTTTTCTCTT
37658 CTCAAATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (27 bp):
TTTTTTTACTTTTTCTTTTTCTCTTAT
Found at i:39980 original size:22 final size:22
Alignment explanation
Indices: 39962--40015 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 22
39952 TTTTAAAATA
39962 TAATATTTAATTAAGTAAATAAT
1 TAATA-TTAATTAAGTAAATAAT
* *
39985 TAATATTAATTAAATTAATAAACT
1 TAATATTAATTAAGTAAAT-AA-T
40009 TAATATT
1 TAATATT
40016 TATCATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 12 0.44
23 7 0.26
24 8 0.30
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
TAATATTAATTAAGTAAATAAT
Found at i:40199 original size:30 final size:29
Alignment explanation
Indices: 40139--40199 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 29
40129 TTATTTATTT
** *
40139 AAATATATATTATTATATTATGTTATATA
1 AAATATATATTATTATATTATAATAAATA
*
40168 AAATATCTAGTTATTATATTATAATAAATA
1 AAATATATA-TTATTATATTATAATAAATA
40198 AA
1 AA
40200 CAAGTAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (29 bp):
AAATATATATTATTATATTATAATAAATA
Found at i:40325 original size:19 final size:20
Alignment explanation
Indices: 40279--40332 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
40269 TTATTATATC
*
40279 ATATTTATTACTAATAGTTA
1 ATATTTATTAATAATAGTTA
* *
40299 TTA-ATATTAATAATA-TTA
1 ATATTTATTAATAATAGTTA
*
40317 ATATTTATTATTAATA
1 ATATTTATTAATAATA
40333 ATATTAATCA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 5 0.19
19 20 0.74
20 2 0.07
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
ATATTTATTAATAATAGTTA
Found at i:40327 original size:28 final size:28
Alignment explanation
Indices: 40296--40372 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
40286 TTACTAATAG
*
40296 TTATTAATATTAATAATATTAATATTTA
1 TTATTAATATTAATAATATTAATATTAA
* * *
40324 TTATTAATAATATTAATCAAT-ATATTAA
1 TTATTAATATTAATAAT-ATTAATATTAA
*
40352 TTAATAAT-TTAAATAATATTA
1 TTATTAATATT-AATAATATTA
40373 TTAAATAAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
27 3 0.08
28 33 0.87
29 2 0.05
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (28 bp):
TTATTAATATTAATAATATTAATATTAA
Found at i:40331 original size:22 final size:22
Alignment explanation
Indices: 40303--40385 Score: 91
Period size: 22 Copynumber: 3.7 Consensus size: 22
40293 TAGTTATTAA
*
40303 TATTAATAATATTAATATTTAT
1 TATTAATAATATTAATATATAT
40325 TATTAATAATATTAATCAATATAT
1 TATTAATAATATTAAT--ATATAT
40349 TAATTAATAAT-TTAA-ATAATAT
1 T-ATTAATAATATTAATAT-ATAT
40371 TATTAAATAA-ATTAA
1 TATT-AATAATATTAA
40386 AACTAATTAG
Statistics
Matches: 54, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
21 5 0.09
22 30 0.56
24 10 0.19
25 9 0.17
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (22 bp):
TATTAATAATATTAATATATAT
Found at i:40363 original size:12 final size:13
Alignment explanation
Indices: 40304--40376 Score: 68
Period size: 12 Copynumber: 6.1 Consensus size: 13
40294 AGTTATTAAT
40304 ATTAATAATATTA
1 ATTAATAATATTA
*
40317 A-T-AT-TTATT-
1 ATTAATAATATTA
40326 ATTAATAATATTA
1 ATTAATAATATTA
*
40339 ATCAAT-ATATTA
1 ATTAATAATATTA
40351 ATTAATAAT-TTA
1 ATTAATAATATTA
* *
40363 AATAATATTATTA
1 ATTAATAATATTA
40376 A
1 A
40377 ATAAATTAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
9 1 0.02
10 5 0.10
11 4 0.08
12 26 0.54
13 12 0.25
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAATAATATTA
Found at i:40448 original size:15 final size:15
Alignment explanation
Indices: 40426--40475 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 15
40416 ATTAATAAAG
40426 TATA-TTATAATTAA
1 TATATTTATAATTAA
40440 TATATTTATAATTAA
1 TATATTTATAATTAA
40455 TTATAATTATACTAATTAA
1 -TAT-ATT-TA-TAATTAA
40474 TA
1 TA
40476 ATAAATTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 4 0.13
15 10 0.32
16 3 0.10
17 3 0.10
18 4 0.13
19 7 0.23
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TATATTTATAATTAA
Found at i:40455 original size:19 final size:20
Alignment explanation
Indices: 40433--40479 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
40423 AAGTATATTA
40433 TAATTAATATATT-TA-TAAT
1 TAATTAATA-ATTATACTAAT
40452 TAATT-ATAATTATACTAAT
1 TAATTAATAATTATACTAAT
40471 TAA-TAATAA
1 TAATTAATAA
40480 ATTAATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.12
18 6 0.24
19 16 0.64
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATTAATAATTATACTAAT
Found at i:40485 original size:15 final size:16
Alignment explanation
Indices: 40433--40491 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 16
40423 AAGTATATTA
40433 TAATTAATATATTTATAAT
1 TAATTAATA-A-TTA-AAT
* *
40452 TAATT-ATAATTATAC
1 TAATTAATAATTAAAT
40467 TAATTAATAA-TAAAT
1 TAATTAATAATTAAAT
40482 TAATTTAATA
1 TAA-TTAATA
40492 TGGAGGTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
15 12 0.35
16 13 0.38
17 1 0.03
18 3 0.09
19 5 0.15
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATTAATAATTAAAT
Found at i:41175 original size:25 final size:25
Alignment explanation
Indices: 41130--41192 Score: 60
Period size: 25 Copynumber: 2.5 Consensus size: 25
41120 ATTTTTGAAA
*
41130 AATATATAATAA-ATTTTATTATAACT
1 AATA-ATAATAATATTTGATTA-AACT
*
41156 AATAATAATAATA-TTGATTAAATT
1 AATAATAATAATATTTGATTAAACT
41180 ATATAATAA-AATA
1 A-ATAATAATAATA
41193 GCTAATTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 8 0.24
25 20 0.61
26 5 0.15
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (25 bp):
AATAATAATAATATTTGATTAAACT
Found at i:41602 original size:16 final size:16
Alignment explanation
Indices: 41581--41642 Score: 74
Period size: 16 Copynumber: 3.9 Consensus size: 16
41571 AAATTTAATT
*
41581 TATTATTAACTATTTA
1 TATTATTAAATATTTA
41597 TATTATTAAATA-TTA
1 TATTATTAAATATTTA
*
41612 TATTAATAACATATTTAA
1 TATTATTAA-ATATTT-A
41630 TATT-TTAAATATT
1 TATTATTAAATATT
41643 AAAATAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
15 11 0.28
16 19 0.47
17 5 0.12
18 5 0.12
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTATTAAATATTTA
Found at i:41638 original size:32 final size:31
Alignment explanation
Indices: 41581--41643 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 31
41571 AAATTTAATT
*
41581 TATTATTAACTATTTATATTATTAAATATTA
1 TATTAATAACTATTTATATTATTAAATATTA
41612 TATTAATAACATATTTAATATT-TTAAATATTA
1 TATTAATAAC-TATTT-ATATTATTAAATATTA
41644 AAATAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 9 0.31
32 15 0.52
33 5 0.17
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.52
Consensus pattern (31 bp):
TATTAATAACTATTTATATTATTAAATATTA
Found at i:42491 original size:26 final size:24
Alignment explanation
Indices: 42462--42529 Score: 64
Period size: 26 Copynumber: 2.7 Consensus size: 24
42452 TAATTAAACT
42462 TTAATTAAATATAAATTAAATAATAG
1 TTAATTAAATATAAATTAAAT-A-AG
* * * *
42488 TTAATTAGATATTAGTTTAATAAG
1 TTAATTAAATATAAATTAAATAAG
*
42512 TTAATTAATTATATAATT
1 TTAATTAAATATA-AATT
42530 GTTTAATGAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
24 12 0.36
25 4 0.12
26 17 0.52
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (24 bp):
TTAATTAAATATAAATTAAATAAG
Found at i:43426 original size:70 final size:69
Alignment explanation
Indices: 43307--43452 Score: 163
Period size: 70 Copynumber: 2.1 Consensus size: 69
43297 AATAAAAAGT
* *
43307 ATATTATTTTATTATAATATAATGAATTAATAATTAAGTAATAACTTAATATTACTAATAATATT
1 ATATTATTTTATTATAATATAATGAATTAATAATTAAGTAATAAATTAATATT-CTAATAATAAT
*
43372 ATTTA
65 ATTGA
* * * *
43377 ATATTATTTTATTAATTAA-A-AAT-AATTAATTATTAATTATTTAAATTAATATTTTAATAATA
1 ATATTATTTTATT-A-TAATATAATGAATTAATAATTAAGTA-ATAAATTAATATTCTAATAATA
43439 ATATTGA
63 ATATTGA
43446 ATTATTA
1 A-TATTA
43453 ATATTAATAA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
69 28 0.43
70 32 0.49
71 2 0.03
72 3 0.05
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (69 bp):
ATATTATTTTATTATAATATAATGAATTAATAATTAAGTAATAAATTAATATTCTAATAATAATA
TTGA
Found at i:43651 original size:19 final size:20
Alignment explanation
Indices: 43627--43669 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
43617 AATTAAATAT
43627 AAATAATTGTTAAT-ATTTA
1 AAATAATTGTTAATAATTTA
*
43646 AAATAATTGTTATTAATTTA
1 AAATAATTGTTAATAATTTA
43666 AAAT
1 AAAT
43670 GCTATTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
AAATAATTGTTAATAATTTA
Found at i:43742 original size:28 final size:28
Alignment explanation
Indices: 43711--43768 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
43701 AAAATGTTAT
*
43711 ATTATATAATTATTA-AATAATTTAATTA
1 ATTAAATAA-TATTATAATAATTTAATTA
* *
43739 ATTAAATTATATTATAATAATTTATTTA
1 ATTAAATAATATTATAATAATTTAATTA
43767 AT
1 AT
43769 AGAATCTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (28 bp):
ATTAAATAATATTATAATAATTTAATTA
Found at i:43940 original size:17 final size:17
Alignment explanation
Indices: 43918--43959 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
43908 CATTAATATA
43918 ATTTATAAATAATGAATT
1 ATTTATAAAT-ATGAATT
* *
43936 A-TTATATATATGTATT
1 ATTTATAAATATGAATT
43952 ATTTATAA
1 ATTTATAA
43960 TTACATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 7 0.35
17 12 0.60
18 1 0.05
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (17 bp):
ATTTATAAATATGAATT
Found at i:44598 original size:25 final size:25
Alignment explanation
Indices: 44568--44615 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
44558 TGCAAGCTAT
**
44568 TTATTTAATTATTAATTATAAATAA
1 TTATTTAATTAAAAATTATAAATAA
*
44593 TTATTTACTTAAAAATTATAAAT
1 TTATTTAATTAAAAATTATAAAT
44616 CTATCCTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
TTATTTAATTAAAAATTATAAATAA
Done.