Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167830.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87221
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.42
Warning! 1000 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:45666 original size:17 final size:18
Alignment explanation
Indices: 45646--45716 Score: 60
Period size: 18 Copynumber: 3.9 Consensus size: 18
45636 ATAATATATT
*
45646 TAATTTATT-TAATTATA
1 TAATTTATTATAATTAAA
45663 TAATATTATTATATATTAAA
1 TAAT-TTATTATA-ATTAAA
45683 T-ATTTATTATAA-TATAA
1 TAATTTATTATAATTA-AA
45700 TAAATATTA-TATAATTA
1 T-AAT-TTATTATAATTA
45717 CATTATTAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
16 2 0.04
17 8 0.18
18 13 0.29
19 11 0.24
20 11 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATTTATTATAATTAAA
Found at i:45671 original size:34 final size:38
Alignment explanation
Indices: 45648--45742 Score: 89
Period size: 37 Copynumber: 2.7 Consensus size: 38
45638 AATATATTTA
*
45648 ATTTATT-TAAT-T-ATATAATATTATTATATATTAAAT
1 ATTTATTATAATATAATA-AATATTATAATATATTAAAT
*
45684 ATTTATTATAATATAATAAATATTAT-ATA-ATTACATT
1 ATTTATTATAATATAATAAATATTATAATATATTA-AAT
*
45721 ATTAATT-T-ATATAAT-AATATTA
1 ATTTATTATAATATAATAAATATTA
45743 ATTTTATTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
34 7 0.13
35 7 0.13
36 12 0.23
37 15 0.28
38 9 0.17
39 3 0.06
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (38 bp):
ATTTATTATAATATAATAAATATTATAATATATTAAAT
Found at i:45690 original size:21 final size:22
Alignment explanation
Indices: 45660--45732 Score: 71
Period size: 21 Copynumber: 3.4 Consensus size: 22
45650 TTATTTAATT
*
45660 ATATAATATTATTATATATTAA
1 ATATTATATTATTATATATTAA
* *
45682 ATATT-TATTATAATATAATAA
1 ATATTATATTATTATATATTAA
* *
45703 ATATTATATAATTACATTATT-A
1 ATATTATATTATTATA-TATTAA
45725 AT-TTATAT
1 ATATTATAT
45733 AATAATATTA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
21 25 0.60
22 14 0.33
23 3 0.07
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (22 bp):
ATATTATATTATTATATATTAA
Found at i:45733 original size:21 final size:18
Alignment explanation
Indices: 45684--45746 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 18
45674 TATATTAAAT
*
45684 ATTTATTATAAT-ATAATAA
1 ATTTA-TATAATAAT-ATTA
45703 ATATTATATAATTACATTATTA
1 AT-TTATATAA-TA-A-TATTA
45725 ATTTATATAATAATATTA
1 ATTTATATAATAATATTA
45743 ATTT
1 ATTT
45747 TATTAAACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
18 9 0.24
19 8 0.21
20 6 0.16
21 8 0.21
22 6 0.16
23 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTTATATAATAATATTA
Found at i:45817 original size:13 final size:14
Alignment explanation
Indices: 45799--45847 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
45789 AATATTTAGA
45799 TAATTAA-TAATAT
1 TAATTAATTAATAT
45812 TAATTAATTAATACT
1 TAATTAATTAATA-T
*
45827 TTATTATATTAA-A-
1 TAATTA-ATTAATAT
45840 TAATTAAT
1 TAATTAAT
45848 AAGAATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 2 0.06
13 12 0.39
14 5 0.16
15 7 0.23
16 5 0.16
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
TAATTAATTAATAT
Found at i:46097 original size:21 final size:20
Alignment explanation
Indices: 46071--46130 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
46061 ACTATTAATA
46071 ATTATTATTAATTTTTGTGTT
1 ATTATTATTAATTTTT-TGTT
**
46092 ATTATTACAAATATTTTTGTT
1 ATTATTATTAAT-TTTTTGTT
46113 ATTAATAATATTAATTTT
1 ATT-AT--TATTAATTTT
46131 ACTTATTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
21 17 0.55
22 6 0.19
23 3 0.10
24 5 0.16
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (20 bp):
ATTATTATTAATTTTTTGTT
Found at i:46437 original size:19 final size:20
Alignment explanation
Indices: 46405--46442 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
46395 TATGTTTATT
46405 ATTATATAAGTAATTATAAA
1 ATTATATAAGTAATTATAAA
*
46425 ATTA-ATAATTAATTATAA
1 ATTATATAAGTAATTATAA
46443 GTAATTAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (20 bp):
ATTATATAAGTAATTATAAA
Found at i:46442 original size:10 final size:10
Alignment explanation
Indices: 46409--46449 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
46399 TTTATTATTA
46409 TATAAGTAAT
1 TATAAGTAAT
46419 TATAA--AAT
1 TATAAGTAAT
*
46427 TAATAATTAAT
1 T-ATAAGTAAT
46438 TATAAGTAAT
1 TATAAGTAAT
46448 TA
1 TA
46450 AGTTATAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
8 4 0.15
9 4 0.15
10 15 0.56
11 4 0.15
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (10 bp):
TATAAGTAAT
Found at i:47001 original size:19 final size:19
Alignment explanation
Indices: 46977--47016 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
46967 ATAAATGAAG
*
46977 ATTAAA-TATTATTAATTAA
1 ATTAAATTAATATT-ATTAA
46996 ATTAAATTAATATTATTAA
1 ATTAAATTAATATTATTAA
47015 AT
1 AT
47017 ATTATTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTAAATTAATATTATTAA
Found at i:47051 original size:22 final size:19
Alignment explanation
Indices: 46983--47054 Score: 56
Period size: 19 Copynumber: 3.6 Consensus size: 19
46973 GAAGATTAAA
*
46983 TATTATTAATTAAAT-TAAAT
1 TATTATT-ATTAAATAT-TAT
*
47003 TAATATTATTAAATATTAT
1 TATTATTATTAAATATTAT
* *
47022 TATAATTATTGTAATATTGAT
1 TATTATTATT-AAATATT-AT
47043 ATATTATTATTA
1 -TATTATTATTA
47055 CTGATAATTA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
19 17 0.41
20 13 0.32
21 2 0.05
22 9 0.22
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
TATTATTATTAAATATTAT
Found at i:47280 original size:15 final size:16
Alignment explanation
Indices: 47260--47290 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
47250 GTATATAATT
47260 AATTAATAAAT-TTAA
1 AATTAATAAATATTAA
47275 AATTAATAAATATTAA
1 AATTAATAAATATTAA
47291 TAAATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTAATAAATATTAA
Found at i:47977 original size:181 final size:179
Alignment explanation
Indices: 47570--48133 Score: 658
Period size: 181 Copynumber: 3.1 Consensus size: 179
47560 ATACATTTGC
* * ** * * * *
47570 TCAAATAGTCATAACTATTTAAACGGGTTCAATAAATAAATTTATTTTTTAAATTTCTTACTTAT
1 TCAAATAGTCATAATTATTTGAACTAGTTCAGTAAACAAATTAATTTTTTAAATCTCTTACTTAT
* * * * *
47635 TAACTTTTGAAAGATTAATAAATTAGTATT-TTTTATTCT--A-AAGATTGTATG-ATAAAAACC
66 TAATTTTTGAAATATTAATAAATTACTATTATTTTATT-TGGATAAGCTTGTATGAAT-GAAA-C
* * * * * * *
47695 AACTGTTATATGACCAAACAAAAGGTAATATTGATTTCAAATAGATAATTGT
128 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAAATAATTGT
* * * * *
47747 TGAAATAGCCATAATTATTTGAACTAATTC-GATAAACATAA-TCATTTTTTAAATCACTTACTT
1 TCAAATAGTCATAATTATTTGAACTAGTTCAG-TAAACA-AATTAATTTTTTAAATCTCTTACTT
47810 ATTAATTTTTGAAATATTAATAAATTACTATTATTTTATTTGGAATAAGCTTGTATGAACTGAAA
64 ATTAATTTTTGAAATATTAATAAATTACTATTATTTTATTTGG-ATAAGCTTGTATGAA-TGAAA
47875 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAAATAATTGT
127 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAAATAATTGT
* * * * *
47928 TCAAATAATCATAATTATTTGAATTTGTTCAGTAAACAAATTAATTTTTTTTAA-CTCTTGCTTA
1 TCAAATAGTCATAATTATTTGAACTAGTTCAGTAAACAAATTAA-TTTTTTAAATCTCTTACTTA
* * *
47992 TTAATTTTTGAAATATTAAGAAATTATTATTATTTTATTTTGGATAAGCTTTTATGAATTGAAAC
65 TTAATTTTTGAAATATTAATAAATTACTATTATTTTA-TTTGGATAAGCTTGTATGAA-TGAAAC
* *
48057 AATTGTTTTTTGTCAAAACAAAAGGTCATAATGATTTTAAATAAATAATTGT
128 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAAATAATTGT
*
48109 TCAAATAGTCATAACTATTTGAACT
1 TCAAATAGTCATAATTATTTGAACT
48134 TGATTGGTAA
Statistics
Matches: 331, Mismatches: 43, Indels: 22
0.84 0.11 0.06
Matches are distributed among these distances:
177 77 0.23
178 9 0.03
180 3 0.01
181 223 0.67
182 18 0.05
183 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (179 bp):
TCAAATAGTCATAATTATTTGAACTAGTTCAGTAAACAAATTAATTTTTTAAATCTCTTACTTAT
TAATTTTTGAAATATTAATAAATTACTATTATTTTATTTGGATAAGCTTGTATGAATGAAACAAT
TGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAAATAATTGT
Found at i:48401 original size:16 final size:16
Alignment explanation
Indices: 48378--48430 Score: 58
Period size: 16 Copynumber: 3.3 Consensus size: 16
48368 AAAATAGATA
48378 ATAA-TAATTATTAAT
1 ATAATTAATTATTAAT
48393 ATAATTAATTATTAACT
1 ATAATTAATTATTAA-T
48410 AT--TTATATTATTAAAT
1 ATAATTA-ATTATT-AAT
48426 ATAAT
1 ATAAT
48431 GTATAAGATG
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
15 7 0.22
16 19 0.59
17 5 0.16
18 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
ATAATTAATTATTAAT
Found at i:48466 original size:16 final size:17
Alignment explanation
Indices: 48447--48480 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
48437 GATGTTATTC
48447 AAATAATATTA-TTATA
1 AAATAATATTATTTATA
*
48463 AAATAGTATTATTTATA
1 AAATAATATTATTTATA
48480 A
1 A
48481 TTAATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
AAATAATATTATTTATA
Found at i:48899 original size:22 final size:22
Alignment explanation
Indices: 48860--48904 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
48850 TAAAATCAAT
* *
48860 AATTTAATTAATTCTAATAATTA
1 AATTAAATTAATTATAAT-ATTA
48883 AATTAAATT-ATTATAATATTA
1 AATTAAATTAATTATAATATTA
48904 A
1 A
48905 TAATTGTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 7 0.35
23 8 0.40
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
AATTAAATTAATTATAATATTA
Found at i:48945 original size:14 final size:15
Alignment explanation
Indices: 48915--48945 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
48905 TAATTGTTAT
48915 TTTAAATTTATATAA
1 TTTAAATTTATATAA
48930 TTTAAATTTA-ATAA
1 TTTAAATTTATATAA
48944 TT
1 TT
48946 ACATAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTAAATTTATATAA
Found at i:49190 original size:9 final size:9
Alignment explanation
Indices: 49176--49210 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
49166 ATAAAATATT
49176 TAATATTTA
1 TAATATTTA
49185 TAATATTTA
1 TAATATTTA
*
49194 TTATA-TTA
1 TAATATTTA
49202 TAATATTTA
1 TAATATTTA
49211 AAATTATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
TAATATTTA
Found at i:49204 original size:17 final size:16
Alignment explanation
Indices: 49170--49220 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
49160 GTAATAATAA
49170 AATATTTAATATTTAT
1 AATATTTAATATTTAT
*
49186 AATATTTATTATATTAT
1 AATATTTAATAT-TTAT
*
49203 AATATTTAA-AATTAT
1 AATATTTAATATTTAT
49218 AAT
1 AAT
49221 TATAATATAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 7 0.23
16 12 0.39
17 12 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATATTTAATATTTAT
Found at i:49229 original size:26 final size:26
Alignment explanation
Indices: 49176--49229 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
49166 ATAAAATATT
*
49176 TAATATTTATAATATTTATTATATTA
1 TAATATTTATAATATTTATTATAATA
49202 TAATATTTA-AA-ATTATAATTATAATA
1 TAATATTTATAATATT-T-ATTATAATA
49228 TA
1 TA
49230 GTTTAAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 3 0.12
25 3 0.12
26 19 0.76
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
TAATATTTATAATATTTATTATAATA
Found at i:49238 original size:23 final size:20
Alignment explanation
Indices: 49182--49228 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 20
49172 TATTTAATAT
49182 TTATAATATTT---ATTATA
1 TTATAATATTTAAAATTATA
49199 TTATAATATTTAAAATTATAA
1 TTATAATATTTAAAATTAT-A
49220 TTATAATAT
1 TTATAATAT
49229 AGTTTAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.42
20 5 0.19
21 10 0.38
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATAATATTTAAAATTATA
Found at i:49475 original size:16 final size:17
Alignment explanation
Indices: 49409--49476 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 17
49399 AATTAATGCT
* *
49409 TATATTATGATT-ATTA
1 TATATTATAATTAATAA
49425 TATA-T-TAATT-ATAA
1 TATATTATAATTAATAA
49439 TATATTATAAGTCTAATTAA
1 TATATTATAA-T-TAA-TAA
49459 T-TATTATAATTAATAA
1 TATATTATAATTAATAA
49475 TA
1 TA
49477 ATATAAATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
14 11 0.26
15 2 0.05
16 11 0.26
17 4 0.09
18 2 0.05
19 9 0.21
20 4 0.09
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (17 bp):
TATATTATAATTAATAA
Found at i:49581 original size:27 final size:28
Alignment explanation
Indices: 49532--49588 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
49522 TATTAATTAT
**
49532 TAATTAATTAATAATATCTAA-TTATAA
1 TAATTAATTAATAATATAAAATTTATAA
49559 TAATTAATTAAATAA-ATAAAATTTATAA
1 TAATTAATT-AATAATATAAAATTTATAA
49587 TA
1 TA
49589 TTATAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (28 bp):
TAATTAATTAATAATATAAAATTTATAA
Found at i:49623 original size:19 final size:17
Alignment explanation
Indices: 49435--49623 Score: 69
Period size: 17 Copynumber: 11.0 Consensus size: 17
49425 TATATTAATT
*
49435 ATAATATATTATAAGTCTA
1 ATAATA-ATTATAA-TATA
*
49454 ATTAATTATTATAAT-TA
1 A-TAATAATTATAATATA
*
49471 ATAATAA-TATAAATATT
1 ATAATAATTAT-AATATA
* * *
49488 GTTATGATTTACTAATAT-
1 ATAAT-AATTA-TAATATA
**
49506 A-AAT-ATTATTTTATA
1 ATAATAATTATAATATA
*
49521 ATATTAATTATTAAT-TA
1 ATAATAATTA-TAATATA
*
49538 ATTAATAATATCTAATTATA
1 A-TAATAAT-TATAA-TATA
49558 ATAATTAATTA-AATA-A
1 ATAA-TAATTATAATATA
*
49574 ATAA-AATTTATAATATT
1 ATAATAA-TTATAATATA
49591 ATAATAATT-T--TATA
1 ATAATAATTATAATATA
49605 ATAATTAAATTATAATATA
1 ATAA-T-AATTATAATATA
49624 GATATTATTA
Statistics
Matches: 127, Mismatches: 19, Indels: 48
0.65 0.10 0.25
Matches are distributed among these distances:
14 13 0.10
15 11 0.09
16 24 0.19
17 25 0.20
18 17 0.13
19 25 0.20
20 12 0.09
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
ATAATAATTATAATATA
Found at i:49645 original size:22 final size:22
Alignment explanation
Indices: 49632--49680 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
49622 TAGATATTAT
49632 TATCTATATTTATAAATAATAA
1 TATCTATATTTATAAATAATAA
* *
49654 TATTTATATTCATATAATTAATAA
1 TATCTATATT--TATAAATAATAA
49678 TAT
1 TAT
49681 GAATAGATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 9 0.39
24 14 0.61
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (22 bp):
TATCTATATTTATAAATAATAA
Found at i:49780 original size:16 final size:16
Alignment explanation
Indices: 49754--49802 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
49744 TTAAATATAG
49754 TAATAATTTTATAATTA
1 TAATAA-TTTATAATTA
*
49771 TAATAATTTATAATAA
1 TAATAATTTATAATTA
49787 TAAT-ATTTATACATTA
1 TAATAATTTATA-ATTA
49803 ATTTAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 7 0.24
16 16 0.55
17 6 0.21
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATAATTTATAATTA
Found at i:49846 original size:19 final size:19
Alignment explanation
Indices: 49805--49885 Score: 62
Period size: 19 Copynumber: 4.3 Consensus size: 19
49795 ATACATTAAT
* *
49805 TTAATTTAATTATA-TATA
1 TTAATATAATAATATTATA
*
49823 ATAATATAATAATATTATA
1 TTAATATAATAATATTATA
*
49842 TTAATATAAATATAAATTAT-
1 TTAATAT-AATA-ATATTATA
49862 TTAATCAT-ATAATTATTA-A
1 TTAAT-ATAATAA-TATTATA
49881 TTAAT
1 TTAAT
49886 TATTAATTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
18 12 0.24
19 22 0.43
20 9 0.18
21 8 0.16
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (19 bp):
TTAATATAATAATATTATA
Found at i:49887 original size:11 final size:11
Alignment explanation
Indices: 49871--49896 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
49861 TTTAATCATA
49871 TAATTATTAAT
1 TAATTATTAAT
49882 TAATTATTAAT
1 TAATTATTAAT
49893 TAAT
1 TAAT
49897 AATTGTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TAATTATTAAT
Found at i:49905 original size:25 final size:26
Alignment explanation
Indices: 49856--49914 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
49846 TATAAATATA
**
49856 AATTATTTAATCATATAATTATTAATT
1 AATTA-TTAATCATATAATTATTAAAC
* *
49883 AATTATTAATTA-ATAATTGTTAAAC
1 AATTATTAATCATATAATTATTAAAC
49908 AATTATT
1 AATTATT
49915 CTATGCAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 17 0.61
26 6 0.21
27 5 0.18
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (26 bp):
AATTATTAATCATATAATTATTAAAC
Found at i:50119 original size:32 final size:29
Alignment explanation
Indices: 50076--50136 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
50066 AATTTAAATA
50076 ATTTAAATATTATTTAAATTAATAATAATAAT
1 ATTTAAATATTA--T-AATTAATAATAATAAT
* *
50108 ATTTAATTATTATAATTAATAATACTAAT
1 ATTTAAATATTATAATTAATAATAATAAT
50137 TTGATTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 15 0.56
30 1 0.04
32 11 0.41
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (29 bp):
ATTTAAATATTATAATTAATAATAATAAT
Found at i:51127 original size:19 final size:19
Alignment explanation
Indices: 51100--51136 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
51090 TCAAATAGTA
*
51100 ATAACTATTTGAACTGGTC
1 ATAACTATTTAAACTGGTC
*
51119 ATAATTATTTAAACTGGT
1 ATAACTATTTAAACTGGT
51137 TTGATAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
ATAACTATTTAAACTGGTC
Found at i:51975 original size:13 final size:13
Alignment explanation
Indices: 51957--52004 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
51947 AATTAAATAC
51957 AAATATTTATTTA
1 AAATATTTATTTA
*
51970 AAATA-TTAGTTA
1 AAATATTTATTTA
*
51982 ATAAT-TCTATTTA
1 A-AATATTTATTTA
51995 AAATATTTAT
1 AAATATTTAT
52005 ATATTTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
12 10 0.36
13 18 0.64
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (13 bp):
AAATATTTATTTA
Found at i:53072 original size:177 final size:180
Alignment explanation
Indices: 52831--53470 Score: 481
Period size: 177 Copynumber: 3.6 Consensus size: 180
52821 ATCATTGTGA
* * * * * *
52831 TGTTTTGTCATAAAATAATTGTTTCAGTTCATACAA-ATTTATTCAAAATAAAATACTTATAATT
1 TGTTATGTCATAAAACAATTATTTCTGTTCATACAAGA-TTATTCAAAATAAAATAATAATAATT
* * * **
52895 TATTAATATTCTAAAAATAAATCAATAAGTGATTTAAAAAGTAAATCTATTTTCCAAATTAGTTC
65 TATTAATATTCTAAAAATAAAT-AATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* ** * *
52960 -AA-A-TTATG-GTCATTTCAACAATTATTTA-TTTCAAATCGTTATCACCTTT
129 AAATAGTTATGACT-ATTTCAACAATTACATACTTT-AAATCATTATAACCTTT
* * *
53009 TGTT-TGGTCATATAACAATTGTTT-T-TATCATACATGATTATTCAAAATAAAATAATAATAAT
1 TGTTAT-GTCATAAAACAATTATTTCTGT-TCATACAAGATTATTCAAAATAAAATAATAATAAT
* * * * *
53071 TTATTAATCTTTTAAAAAT---GAATAAGAGATTTAAAAAATGAATCTGTTTACCAAACCAGTTC
64 TTATTAATATTCTAAAAATAAATAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * *
53133 AAATAGTTATGACTATTTGAACAATTCCATACTTTAAATCATTATAATCTTT
129 AAATAGTTATGACTATTTCAACAATTACATACTTTAAATCATTATAACCTTT
* * * *
53185 TGTTATGTCATAAAACAATTATTTCTGTTCATACAAGCTTATTCAAAATAAAACAATACTAATCT
1 TGTTATGTCATAAAACAATTATTTCTGTTCATACAAGATTATTCAAAATAAAATAATAATAATTT
* * * * * * ** * * *
53250 AATAATATTCCAAAAATTAATAATTAAGGGATTTAAAAAATAAATTTGTTTGTCGAACCAATTGA
66 ATTAATATTCTAAAAATAAATAA-TAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCA
* * * * * * * *
53315 AATAGTTAAGACTATATGAACAATTATATAATTTCAAATCGTTATGACATTT
130 AATAGTTATGACTATTTCAACAATTACATACTTT-AAATCATTATAACCTTT
* * * * * * * ** *
53367 TG-TCTGTTAT-AAAC-TTTCTTAC--TTCATCCTAAGCTTATTCCGAATCAAATAA-AATGAAT
1 TGTTATGTCATAAAACAATTATTTCTGTTCATAC-AAGATTATTCAAAATAAAATAATAAT-AAT
* *
53426 TTATTAATATTTCAAAAAAT-AATAAGTAAGAGATTTAAAATATAA
64 TTATTAATA-TTCTAAAAATAAATAA-TAAGAGATTTAAAAAATAA
53471 TTAGCTATTT
Statistics
Matches: 373, Mismatches: 70, Indels: 38
0.78 0.15 0.08
Matches are distributed among these distances:
173 35 0.09
174 2 0.01
175 1 0.00
176 53 0.14
177 107 0.29
178 72 0.19
179 14 0.04
180 6 0.02
181 68 0.18
182 15 0.04
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (180 bp):
TGTTATGTCATAAAACAATTATTTCTGTTCATACAAGATTATTCAAAATAAAATAATAATAATTT
ATTAATATTCTAAAAATAAATAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCAA
ATAGTTATGACTATTTCAACAATTACATACTTTAAATCATTATAACCTTT
Found at i:53337 original size:181 final size:176
Alignment explanation
Indices: 53005--53339 Score: 395
Period size: 181 Copynumber: 1.9 Consensus size: 176
52995 TCGTTATCAC
* * * *
53005 CTTTTGTTTGGTCATATAACAATTGTTTTTATCATACATGATTATTCAAAATAAAATAATAATAA
1 CTTTTGTTTGGTCATAAAACAATTATTTTTATCATACAAGATTATTCAAAATAAAACAATAATAA
* * * ** * *
53070 TTTATTAATCTTTTAAAAATGAATAAGAGATTTAAAAAATGAATCTGTTTACCAAACCAGTTCAA
66 TCTAATAATATTCCAAAAATGAATAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAATTCAA
* *
53135 ATAGTTATGACTATTTGAACAATTCCATACTTTAAATCATTATAAT
131 ATAGTTAAGACTATATGAACAATTCCATACTTTAAATCATTATAAT
* *
53181 CTTTTGTTAT-GTCATAAAACAATTATTTCTGT-TCATACAAGCTTATTCAAAATAAAACAATAC
1 CTTTTGTT-TGGTCATAAAACAATTATTT-T-TATCATACAAGATTATTCAAAATAAAACAATAA
* * * ** *
53244 TAATCTAATAATATTCCAAAAATTAATAATTAAGGGATTTAAAAAATAAATTTGTTTGTCGAACC
63 TAATCTAATAATATTCCAAAAA-T--GAA-TAAGAGATTTAAAAAATAAATCTGTTTACCAAACC
*
53309 AATTGAAATAGTTAAGACTATATGAACAATT
124 AATTCAAATAGTTAAGACTATATGAACAATT
53340 ATATAATTTC
Statistics
Matches: 130, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
176 24 0.18
177 46 0.35
178 2 0.02
180 2 0.02
181 56 0.43
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (176 bp):
CTTTTGTTTGGTCATAAAACAATTATTTTTATCATACAAGATTATTCAAAATAAAACAATAATAA
TCTAATAATATTCCAAAAATGAATAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAATTCAA
ATAGTTAAGACTATATGAACAATTCCATACTTTAAATCATTATAAT
Found at i:53862 original size:24 final size:23
Alignment explanation
Indices: 53835--53880 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
53825 ATACAATTAT
* *
53835 ATTAGATAATATTAATAATATTTC
1 ATTAAATAATA-TAATAAGATTTC
*
53859 ATTAAATATTATAATAAGATTT
1 ATTAAATAATATAATAAGATTT
53881 AAAATTATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (23 bp):
ATTAAATAATATAATAAGATTTC
Found at i:54490 original size:182 final size:178
Alignment explanation
Indices: 54245--54574 Score: 396
Period size: 181 Copynumber: 1.8 Consensus size: 178
54235 AAATAAGTTT
* * * **
54245 AAATAGTTATGACTTTAAACAATTATCATTTTAAATTCGTTATGACCTTTTGTTTTATCATAAAA
1 AAATAGTTATGACTTTAAACAATTATCATTTCAAATTCATTATGAACTTTTCATTTATCATAAAA
* * * *
54310 CCAATTGTTTCATT-TCATAAAAG-CTTATCCAAAATAAAATAATATTACTTTATTAATATTTCA
66 -AAATTGTTT--TTATCATAAAAGCCTAAT-CAAAATAAAATAATACTACTTTATTAATATTTAA
*
54373 AAAATTAAGAAGTTGGAGATTTAAAACATAAATCATTTTATAAAATCAATTC
127 AAAATTAAGAAGTAGGAGATTTAAAACATAAATCATTTTATAAAATCAATTC
* * * *
54425 AAATAGTTATGGCTATTTGAACAATTATCTATTTCAAA-TCATTTTGAACTTTTCATTTGTCATA
1 AAATAGTTATGAC--TTTAAACAATTATC-ATTTCAAATTCATTATGAACTTTTCATTTATCATA
* * * *
54489 AAAAAATTGTTTTTCATCATACAAGCCTAATTAGAATAAAATAATACTAGTTTATTAATATTTAA
63 AAAAAATTGTTTTT-ATCATAAAAGCCTAATCAAAATAAAATAATACTACTTTATTAATATTTAA
*
54554 AAAATTAATAAGTAGGAGATT
127 AAAATTAAGAAGTAGGAGATT
54575 ATCTATTTAC
Statistics
Matches: 125, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
179 2 0.02
180 12 0.10
181 64 0.51
182 40 0.32
183 7 0.06
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (178 bp):
AAATAGTTATGACTTTAAACAATTATCATTTCAAATTCATTATGAACTTTTCATTTATCATAAAA
AAATTGTTTTTATCATAAAAGCCTAATCAAAATAAAATAATACTACTTTATTAATATTTAAAAAA
TTAAGAAGTAGGAGATTTAAAACATAAATCATTTTATAAAATCAATTC
Found at i:56056 original size:181 final size:182
Alignment explanation
Indices: 55835--56172 Score: 428
Period size: 181 Copynumber: 1.9 Consensus size: 182
55825 TAATAGGAGA
** * *
55835 TTTAAAAAATAAATTTGTTTGTCAAACCAGTTCAAATAGTTAAGACTATAAAAATAATTATCTAT
1 TTTAAAAAATAAATTTGTTTACCAAACAAGTTCAAATAGTTAAGACTATAAAAACAATTATCTAT
* * * * * * * ***
55900 TTCAAATCATTCTGAAGTTTT-ATTTAGTCATAAAATAATT-TTTCAGTTTATACGTGCTTATTC
66 TTAAAATAAATATGAACTTTTGATTTA-TCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTC
55963 AAAATAAAATAATACTAATTTATTAATATTCAAAAAATTAATGAACAACAAAT
130 AAAATAAAATAATACTAATTTATTAATATTCAAAAAATTAATGAACAACAAAT
* * ***
56016 TTTAAAACATAAATTTGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
1 TTTAAAAAATAAATTTGTTTACCAAACAAGTTCAAATAGTTAAGACTATAAAAACAATTATCTAT
* * **
56081 TTAAAATAAATATGACCTTTTGTTTTATCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTTG
66 TTAAAATAAATATGAACTTTTGATTTATCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTCA
* *
56146 AAATAAAATAATATTACTTTATTAATA
131 AAATAAAATAATACTAATTTATTAATA
56173 AAATAATAAA
Statistics
Matches: 130, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
181 83 0.64
182 47 0.36
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (182 bp):
TTTAAAAAATAAATTTGTTTACCAAACAAGTTCAAATAGTTAAGACTATAAAAACAATTATCTAT
TTAAAATAAATATGAACTTTTGATTTATCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTCA
AAATAAAATAATACTAATTTATTAATATTCAAAAAATTAATGAACAACAAAT
Found at i:56641 original size:29 final size:28
Alignment explanation
Indices: 56588--56647 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
56578 AGATAAAATT
* * *
56588 AATAATAATTTTTTATTATATATATTTA
1 AATAATAATTTTTTAATATAAATATTAA
56616 AATAA-AATATTTTTAATATTAAATATTAA
1 AATAATAAT-TTTTTAATA-TAAATATTAA
56645 AAT
1 AAT
56648 TAATTTATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 3 0.11
28 13 0.48
29 11 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (28 bp):
AATAATAATTTTTTAATATAAATATTAA
Found at i:57189 original size:20 final size:20
Alignment explanation
Indices: 57164--57203 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
57154 TTATATTTTA
57164 ACTAATTAATAA-AATATTAT
1 ACTAATT-ATAATAATATTAT
*
57184 ACTAATTTTAATAATATTAT
1 ACTAATTATAATAATATTAT
57204 TAAATTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
ACTAATTATAATAATATTAT
Found at i:57265 original size:22 final size:20
Alignment explanation
Indices: 57218--57273 Score: 58
Period size: 22 Copynumber: 2.7 Consensus size: 20
57208 TTAATTATTA
*
57218 AAATCAATAATTAAATGATT
1 AAATTAATAATTAAATGATT
*
57238 AAATTAATAATATAAATTTATT
1 AAATTAATAAT-TAAA-TGATT
* *
57260 ATATTAATATTTAA
1 AAATTAATAATTAA
57274 TAGAATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 10 0.33
21 7 0.23
22 13 0.43
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
AAATTAATAATTAAATGATT
Found at i:57389 original size:22 final size:22
Alignment explanation
Indices: 57346--57389 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
57336 TAATTGTTTT
* * *
57346 AAATTATTTATTTAAATGATAA
1 AAATTATTGATATAAATAATAA
*
57368 AAATTATTGATATAATTAATAA
1 AAATTATTGATATAAATAATAA
57390 TATTATATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (22 bp):
AAATTATTGATATAAATAATAA
Found at i:57637 original size:17 final size:16
Alignment explanation
Indices: 57616--57672 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 16
57606 TGAAATTGTT
57616 AATATTAATAATAG-AA
1 AATATTAATAAT-GTAA
57632 ATATATTAAT-ATGTAA
1 A-ATATTAATAATGTAA
57648 AATATTAATAAT-TAA
1 AATATTAATAATGTAA
57663 TAATA-TAATA
1 -AATATTAATA
57673 TAATATTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
15 17 0.46
16 12 0.32
17 8 0.22
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.39
Consensus pattern (16 bp):
AATATTAATAATGTAA
Found at i:57687 original size:12 final size:12
Alignment explanation
Indices: 57615--57697 Score: 59
Period size: 12 Copynumber: 7.1 Consensus size: 12
57605 TTGAAATTGT
57615 TAATATTAATAA
1 TAATATTAATAA
* *
57627 TAGA-AAT-ATAT
1 TA-ATATTAATAA
57638 TAATATGTAA-AA
1 TAATAT-TAATAA
* *
57650 TATTAATAATTAA
1 TAATATTAA-TAA
57663 TAATA-TAAT-A
1 TAATATTAATAA
*
57673 TAATATTATTAA
1 TAATATTAATAA
57685 TAATATTAATAA
1 TAATATTAATAA
57697 T
1 T
57698 TTTTAATAGC
Statistics
Matches: 54, Mismatches: 9, Indels: 16
0.68 0.11 0.20
Matches are distributed among these distances:
10 7 0.13
11 13 0.24
12 26 0.48
13 8 0.15
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.42
Consensus pattern (12 bp):
TAATATTAATAA
Found at i:57691 original size:9 final size:9
Alignment explanation
Indices: 57615--57697 Score: 59
Period size: 9 Copynumber: 9.4 Consensus size: 9
57605 TTGAAATTGT
57615 TAATATTAA
1 TAATATTAA
**
57624 TAATAGAAA
1 TAATATTAA
57633 T-ATATTAA
1 TAATATTAA
*
57641 T-AT-GTAA
1 TAATATTAA
57648 -AATATTAA
1 TAATATTAA
*
57656 TAATTAATAA
1 TAA-TATTAA
57666 T-ATAATATAA
1 TAAT-AT-TAA
*
57676 TATTATTAA
1 TAATATTAA
57685 TAATATTAA
1 TAATATTAA
57694 TAAT
1 TAAT
57698 TTTTAATAGC
Statistics
Matches: 57, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
7 5 0.09
8 12 0.21
9 27 0.47
10 12 0.21
11 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.42
Consensus pattern (9 bp):
TAATATTAA
Found at i:57696 original size:38 final size:39
Alignment explanation
Indices: 57614--57698 Score: 113
Period size: 38 Copynumber: 2.2 Consensus size: 39
57604 TTTGAAATTG
*
57614 TTAAT-ATTAATAATAGAAATATATTAATATGTAAAATA
1 TTAATAATTAATAATAGAAATATAATAATATGTAAAATA
* *
57652 TTAATAATTAATAATA-TAATATAATATTAT-TAATAATA
1 TTAATAATTAATAATAGAAATATAATAATATGTAA-AATA
57690 TTAATAATT
1 TTAATAATT
57699 TTTAATAGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
37 3 0.07
38 29 0.69
39 10 0.24
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (39 bp):
TTAATAATTAATAATAGAAATATAATAATATGTAAAATA
Found at i:57703 original size:19 final size:19
Alignment explanation
Indices: 57648--57705 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 19
57638 TAATATGTAA
57648 AATATTAATAA---TTAAT
1 AATATTAATAATTTTTAAT
*
57664 AATATAATATAATATTATTAAT
1 AATATTA-ATAAT-TT-TTAAT
57686 AATATTAATAATTTTTAAT
1 AATATTAATAATTTTTAAT
57705 A
1 A
57706 GCTTATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 6 0.18
17 4 0.12
19 6 0.18
20 2 0.06
21 5 0.15
22 11 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AATATTAATAATTTTTAAT
Found at i:58770 original size:55 final size:53
Alignment explanation
Indices: 58711--58825 Score: 141
Period size: 48 Copynumber: 2.2 Consensus size: 53
58701 TTTATTATTA
*
58711 AATAATTTGATTTATATTTATATAATAATTTTTTAGCTCTTACTAATAAACATAT
1 AATAA-TTGATTTAGATTTATATAATAA-TTTTTAGCTCTTACTAATAAACATAT
*
58766 AAT-A---A-TTAGATTTATATAATAATTTTTAGCTTTTACTAATAAACATAT
1 AATAATTGATTTAGATTTATATAATAATTTTTAGCTCTTACTAATAAACATAT
*
58814 AACAATTAGATT
1 AATAATT-GATT
58826 AATTAATAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
48 27 0.53
49 17 0.33
50 1 0.02
53 1 0.02
54 2 0.04
55 3 0.06
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (53 bp):
AATAATTGATTTAGATTTATATAATAATTTTTAGCTCTTACTAATAAACATAT
Found at i:58806 original size:48 final size:49
Alignment explanation
Indices: 58726--58834 Score: 177
Period size: 48 Copynumber: 2.3 Consensus size: 49
58716 TTTGATTTAT
*
58726 ATTTATATAATAATTTTTTAGCTCTTACTAATAAACATATAATAATTAG
1 ATTTATATAATAATTTTTTAGCTCTTACTAATAAACATATAACAATTAG
*
58775 ATTTATATAATAA-TTTTTAGCTTTTACTAATAAACATATAACAATTAG
1 ATTTATATAATAATTTTTTAGCTCTTACTAATAAACATATAACAATTAG
*
58823 ATTAAT-TAATAA
1 ATTTATATAATAA
58835 AATTAATCTA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
47 6 0.11
48 38 0.67
49 13 0.23
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (49 bp):
ATTTATATAATAATTTTTTAGCTCTTACTAATAAACATATAACAATTAG
Found at i:59996 original size:21 final size:20
Alignment explanation
Indices: 59957--60008 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
59947 TTATTTATCT
*
59957 TTATAAATT-ATATTATAAC
1 TTATAAATTAATAGTATAAC
59976 TAGTATAAATTAATAGT-TAAC
1 T--TATAAATTAATAGTATAAC
59997 TTATAAA-TAATA
1 TTATAAATTAATA
60009 ATTCCTATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 5 0.17
19 7 0.24
21 13 0.45
22 4 0.14
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (20 bp):
TTATAAATTAATAGTATAAC
Found at i:60161 original size:17 final size:17
Alignment explanation
Indices: 60133--60174 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
60123 TATTTTATTT
*
60133 ATATTAATAAAT-AATTA
1 ATATT-ATAAATGAATAA
60150 ATAATTATAAATGAATAA
1 AT-ATTATAAATGAATAA
60168 ATATTAT
1 ATATTAT
60175 TGATTAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
ATATTATAAATGAATAA
Found at i:60243 original size:22 final size:22
Alignment explanation
Indices: 60213--60261 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
60203 TAATTTTTGA
60213 AATTATAATACTTAA-ATTAAAT
1 AATTATAAT-CTTAATATTAAAT
* *
60235 AATTTTAATTTTAATATTAAAT
1 AATTATAATCTTAATATTAAAT
*
60257 TATTA
1 AATTA
60262 AAATGATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTATAATCTTAATATTAAAT
Found at i:60338 original size:14 final size:15
Alignment explanation
Indices: 60314--60342 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
60304 TAATAACTAT
60314 ATATCATAATAAAAA
1 ATATCATAATAAAAA
60329 ATAT-ATAATAAAAA
1 ATATCATAATAAAAA
60343 TTAATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
ATATCATAATAAAAA
Found at i:60933 original size:181 final size:177
Alignment explanation
Indices: 60576--60961 Score: 398
Period size: 181 Copynumber: 2.2 Consensus size: 177
60566 TAATAAGTAG
* * * * * * * * * *
60576 GAGATTTAAAAAATAAATTTATTTATCGAA-TCAGTTTAAATAATTATGACTATTTGAACAATTA
1 GAGATTTAAAAAATAAATCTATTTACCAAACT-AATTCAACTAGTTAAGGCTATATGAACAATTA
* * *
60640 TATATTTCCAATTGTTATAACCTTTTGTTTTGCCATAAAACAATTATTTATCTTCATACAAGCTT
65 TATATTTCAAATCGTTATAACCTTTTGTTTTGCCATAAAACAAATATTTATCTTCATACAAGCTT
* *
60705 ATTCGAAATAAAATAATACTAATCTAGTAATATTATGAAATTTAATAA
130 ATTCGAAATAAAATAATACTAATCTAGTAATATTATAAAAATTAATAA
* * *
60753 TTGATAGATTTAAAAAATAAATTTGTTTACCAAACTAATTCAACTAGTTAAGGCTATATGAATAA
1 --G--AGATTTAAAAAATAAATCTATTTACCAAACTAATTCAACTAGTTAAGGCTATATGAACAA
* * * * * * **
60818 TTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATGTAAG
62 TTATATATTTCAAATCGTTATAACCTTTTGTTTTGCCATAAAACAAATATTTATCTTCATACAAG
* * * * * * *
60883 TTTGTTCGAAATAAAATAGTATTAATTTATTGATATT-TCAAAAATTAATAA
127 CTTATTCGAAATAAAATAATACTAATCTAGTAATATTAT-AAAAATTAATAA
*
60934 GAGATTTAATAAATAAATCTATTTACCA
1 GAGATTTAAAAAATAAATCTATTTACCA
60962 TTTTAGTTCA
Statistics
Matches: 169, Mismatches: 34, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
177 24 0.14
179 2 0.01
180 1 0.01
181 141 0.83
182 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (177 bp):
GAGATTTAAAAAATAAATCTATTTACCAAACTAATTCAACTAGTTAAGGCTATATGAACAATTAT
ATATTTCAAATCGTTATAACCTTTTGTTTTGCCATAAAACAAATATTTATCTTCATACAAGCTTA
TTCGAAATAAAATAATACTAATCTAGTAATATTATAAAAATTAATAA
Found at i:61979 original size:13 final size:13
Alignment explanation
Indices: 61961--61994 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
61951 ATTAAATGAA
61961 TATAATATTAAAT
1 TATAATATTAAAT
*
61974 TATAATATTTAAT
1 TATAATATTAAAT
61987 TCATAATA
1 T-ATAATA
61995 CTAATATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
TATAATATTAAAT
Found at i:64127 original size:25 final size:26
Alignment explanation
Indices: 64097--64147 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
64087 TTATCTGATA
64097 TAATTAAT-ATCAATTAA-TTATTATT
1 TAATTAATAAT-AATTAATTTATTATT
64122 TAATTAATAATAATTAATTTATTATT
1 TAATTAATAATAATTAATTTATTATT
64148 ATATTATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
TAATTAATAATAATTAATTTATTATT
Found at i:64128 original size:15 final size:15
Alignment explanation
Indices: 64108--64149 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
64098 AATTAATATC
64108 AATTAATTATTATTT
1 AATTAATTATTATTT
* *
64123 AATTAA-TAATAATT
1 AATTAATTATTATTT
*
64137 AATTTATTATTAT
1 AATTAATTATTAT
64150 ATTATTATAA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTAATTATTATTT
Found at i:64250 original size:11 final size:11
Alignment explanation
Indices: 64219--64276 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
64209 ATTATTATTA
*
64219 TAATAATTAGT
1 TAATAATTAAT
64230 ATATATAATTAAT
1 -TA-ATAATTAAT
64243 TAATAATTAAT
1 TAATAATTAAT
* *
64254 TAATTATAAAT
1 TAATAATTAAT
* *
64265 TATTAATAAAT
1 TAATAATTAAT
64276 T
1 T
64277 TAAAAAAGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
11 28 0.70
12 4 0.10
13 8 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (11 bp):
TAATAATTAAT
Found at i:64261 original size:25 final size:25
Alignment explanation
Indices: 64097--64273 Score: 66
Period size: 25 Copynumber: 7.0 Consensus size: 25
64087 TTATCTGATA
* *
64097 TAATTAA-TATCAATTAATTATTATT
1 TAATTAATTAT-AATTAATTAATAAT
* * *
64122 TAATTAATAATAATTAATTTATTAT
1 TAATTAATTATAATTAATTAATAAT
** *
64147 TATATT-ATTATAAACAAAATTTATAATGT
1 TA-ATTAATTAT-AA-TTAATTAATAA--T
* * * *
64176 TAA-TAATTCTAA-TGATT-TTAGT
1 TAATTAATTATAATTAATTAATAAT
*
64198 TAA-TAAATATAATT-ATTATTATAA-
1 TAATTAATTATAATTAATTA--ATAAT
64222 TAATTAGTATATATAATTAATTAATAAT
1 TAATTA--AT-TATAATTAATTAATAAT
64250 TAATTAATTATAAATT-ATTAATAA
1 TAATTAATTAT-AATTAATTAATAA
64274 ATTTAAAAAA
Statistics
Matches: 115, Mismatches: 19, Indels: 36
0.68 0.11 0.21
Matches are distributed among these distances:
22 14 0.12
23 1 0.01
24 5 0.04
25 41 0.36
26 13 0.11
27 16 0.14
28 18 0.16
29 7 0.06
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (25 bp):
TAATTAATTATAATTAATTAATAAT
Found at i:65214 original size:17 final size:19
Alignment explanation
Indices: 65192--65229 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
65182 AAAGTTTAAA
65192 AAATA-TTTT-ATTATTAT
1 AAATATTTTTAATTATTAT
65209 AAATATTTTTAATTATTAT
1 AAATATTTTTAATTATTAT
65228 AA
1 AA
65230 TTATAACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
19 10 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AAATATTTTTAATTATTAT
Found at i:66175 original size:32 final size:32
Alignment explanation
Indices: 66114--66175 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
66104 AATATTTTAA
*
66114 TTATTTTAAATTAAATTAAAATTATTTAATTT
1 TTATTTTAAATTAAATTAAAATTAATTAATTT
* *
66146 TTATTTTAATATT-AATTAGATTTAATTAAT
1 TTATTTTAA-ATTAAATTAAAATTAATTAAT
66176 AAATATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 23 0.88
33 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (32 bp):
TTATTTTAAATTAAATTAAAATTAATTAATTT
Found at i:66275 original size:13 final size:12
Alignment explanation
Indices: 66225--66278 Score: 63
Period size: 13 Copynumber: 4.3 Consensus size: 12
66215 GAATTAGAGT
*
66225 AATAATTATAAAA
1 AATAATTAT-TAA
*
66238 AATAATTATTTA
1 AATAATTATTAA
66250 AATAATTATTAA
1 AATAATTATTAA
*
66262 AATCAATAATTAA
1 AAT-AATTATTAA
66275 AATA
1 AATA
66279 TTTTGAGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
12 16 0.44
13 20 0.56
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (12 bp):
AATAATTATTAA
Found at i:66277 original size:25 final size:25
Alignment explanation
Indices: 66225--66278 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
66215 GAATTAGAGT
* *
66225 AATAATTATAAAAAATAATTATTTA
1 AATAATTATAAAAAATAATAATTAA
*
66250 AATAATTAT-TAAAATCAATAATTAA
1 AATAATTATAAAAAAT-AATAATTAA
66275 AATA
1 AATA
66279 TTTTGAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (25 bp):
AATAATTATAAAAAATAATAATTAA
Found at i:67207 original size:17 final size:18
Alignment explanation
Indices: 67165--67213 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
67155 TTTAATAATT
* *
67165 ATTATTATA-AATAATAA
1 ATTATTATATATTTATAA
67182 ATTATTATA-ATTTATAA
1 ATTATTATATATTTATAA
67199 ATT-TATATATATTTA
1 ATTAT-TATATATTTA
67214 ATATATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 1 0.04
17 22 0.79
18 5 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTATTATATATTTATAA
Found at i:67213 original size:18 final size:17
Alignment explanation
Indices: 67165--67201 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
67155 TTTAATAATT
* *
67165 ATTATTATAAATAATAA
1 ATTATTATAATTTATAA
67182 ATTATTATAATTTATAA
1 ATTATTATAATTTATAA
67199 ATT
1 ATT
67202 TATATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATTATAATTTATAA
Found at i:67363 original size:10 final size:10
Alignment explanation
Indices: 67326--67363 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
67316 TTATTTTAAT
*
67326 ATAATAATAA
1 ATAATAATTA
67336 ATAATAATTA
1 ATAATAATTA
*
67346 CT-ATAATTA
1 ATAATAATTA
67355 ATAATAATT
1 ATAATAATT
67364 TATTAATAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (10 bp):
ATAATAATTA
Found at i:67626 original size:26 final size:26
Alignment explanation
Indices: 67578--67627 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
67568 AGTATAATTA
* *
67578 TTTAAAATTTATTTAAATTTTAAAAT
1 TTTAAAATTTATTGAAATGTTAAAAT
67604 TTTAAAATTT-TTGAAATAGTTAAA
1 TTTAAAATTTATTGAAAT-GTTAAA
67628 TTTATTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (26 bp):
TTTAAAATTTATTGAAATGTTAAAAT
Found at i:68079 original size:18 final size:18
Alignment explanation
Indices: 68058--68093 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
68048 TATAATAATA
*
68058 GATATAATAATAAGCTAT
1 GATAAAATAATAAGCTAT
*
68076 GATAAAATAGTAAGCTAT
1 GATAAAATAATAAGCTAT
68094 TTTTTAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.14, T:0.31
Consensus pattern (18 bp):
GATAAAATAATAAGCTAT
Found at i:69241 original size:20 final size:22
Alignment explanation
Indices: 69216--69255 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
69206 TTATAAATAT
69216 ATAATTTTTA-AAA-AATTTTA
1 ATAATTTTTATAAATAATTTTA
69236 ATAATTTTTATAAATAATTT
1 ATAATTTTTATAAATAATTT
69256 ACAATTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATAATTTTTATAAATAATTTTA
Found at i:69410 original size:19 final size:18
Alignment explanation
Indices: 69345--69410 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 18
69335 TAATAATATT
*
69345 ATTATTAATTAATATTAA
1 ATTATAAATTAATATTAA
* *
69363 ATTTATGAATATTGATTTTAA
1 A-TTAT-AA-ATTAATATTAA
*
69384 TTTA-AAATTAATAATTAA
1 ATTATAAATTAAT-ATTAA
69402 ATTATAAAT
1 ATTATAAAT
69411 AGTATAATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 9
0.69 0.13 0.17
Matches are distributed among these distances:
17 5 0.14
18 10 0.28
19 8 0.22
20 4 0.11
21 9 0.25
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (18 bp):
ATTATAAATTAATATTAA
Found at i:69588 original size:23 final size:22
Alignment explanation
Indices: 69559--69615 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
69549 CCTTTTATTT
* *
69559 TAATAATTATTATCAGATATAA
1 TAATAATTATAATCAAATATAA
* *
69581 TAATTAATTATAATTAAATATAT
1 TAA-TAATTATAATCAAATATAA
69604 TAATAATTATAA
1 TAATAATTATAA
69616 CCTAATTAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 12 0.40
23 18 0.60
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
TAATAATTATAATCAAATATAA
Found at i:69712 original size:27 final size:27
Alignment explanation
Indices: 69666--69730 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
69656 TATAAGTATC
* *
69666 AATAATA-ATATTATTGAT-AA-AATA
1 AATAATATTTATTATTAATAAATAATA
69690 AATAAGTAATTTATTATTAATAAATAATA
1 AATAA-T-ATTTATTATTAATAAATAATA
69719 AATAATATTTAT
1 AATAATATTTAT
69731 AATTTAATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
24 5 0.15
25 1 0.03
26 1 0.03
27 15 0.44
28 3 0.09
29 9 0.26
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (27 bp):
AATAATATTTATTATTAATAAATAATA
Found at i:69849 original size:25 final size:23
Alignment explanation
Indices: 69820--69881 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 23
69810 TATTGAAATA
69820 ATAATTATTTAATAATAATTATATT
1 ATAATTATTTAATAATAA-TA-ATT
*
69845 ATAATTATTTAA-AATTATAATT
1 ATAATTATTTAATAATAATAATT
69867 ATAATATAGTTTAAT
1 ATAAT-TA-TTTAAT
69882 TGAATTTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 8 0.24
23 4 0.12
24 9 0.27
25 12 0.36
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
ATAATTATTTAATAATAATAATT
Found at i:69887 original size:27 final size:21
Alignment explanation
Indices: 69836--69880 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
69826 ATTTAATAAT
69836 AATTATATTATAATTATTTAA
1 AATTATATTATAATTATTTAA
69857 AATTATAATTATAATATAGTTTAA
1 AATTAT-ATTATAAT-TA-TTTAA
69881 TTGAATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.29
22 8 0.38
23 2 0.10
24 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
AATTATATTATAATTATTTAA
Found at i:70101 original size:16 final size:15
Alignment explanation
Indices: 70071--70104 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
70061 TATTTATTTC
*
70071 AATAATAAGAATTAT
1 AATAATAACAATTAT
70086 AATAATAAACAATTAT
1 AATAAT-AACAATTAT
70102 AAT
1 AAT
70105 TATTAGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (15 bp):
AATAATAACAATTAT
Found at i:70163 original size:12 final size:13
Alignment explanation
Indices: 70146--70208 Score: 58
Period size: 12 Copynumber: 4.9 Consensus size: 13
70136 TAGTATAATA
70146 TTATAATAA-ATT
1 TTATAATAATATT
70158 TTATAATAATATT
1 TTATAATAATATT
* *
70171 TTATGATAATA-A
1 TTATAATAATATT
* * *
70183 TTATAGTATTATA
1 TTATAATAATATT
70196 TTATTAATAATAT
1 TTA-TAATAATAT
70209 AAATTATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
12 17 0.41
13 17 0.41
14 7 0.17
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (13 bp):
TTATAATAATATT
Found at i:70274 original size:9 final size:8
Alignment explanation
Indices: 70097--70279 Score: 69
Period size: 8 Copynumber: 22.1 Consensus size: 8
70087 ATAATAAACA
70097 ATTATAATT
1 ATTATAA-T
70106 ATTAGTAAT
1 ATTA-TAAT
70115 AATT-TAAT
1 -ATTATAAT
70123 A--A-AAT
1 ATTATAAT
*
70128 AGTTATAGT
1 A-TTATAAT
*
70137 AGTATAAT
1 ATTATAAT
70145 ATTATAAT
1 ATTATAAT
70153 AAATTTTATAAT
1 --A--TTATAAT
* **
70165 AATATTTT
1 ATTATAAT
*
70173 ATGATAAT
1 ATTATAAT
*
70181 AATTATAGT
1 -ATTATAAT
*
70190 ATTATATT
1 ATTATAAT
70198 A-T-TAAT
1 ATTATAAT
*
70204 AATATAA-
1 ATTATAAT
70211 ATTATAAT
1 ATTATAAT
70219 AATTATAAT
1 -ATTATAAT
70228 ATTATTTAAT
1 ATTA--TAAT
*
70238 TTTATTGAAT
1 ATTA-T-AAT
70248 ATTATAAT
1 ATTATAAT
70256 A-TATAA-
1 ATTATAAT
70262 ATTATAAAT
1 ATTAT-AAT
*
70271 ATTAAAAT
1 ATTATAAT
70279 A
1 A
70280 ATTACTACAA
Statistics
Matches: 133, Mismatches: 19, Indels: 45
0.68 0.10 0.23
Matches are distributed among these distances:
5 4 0.03
6 5 0.04
7 17 0.13
8 50 0.38
9 29 0.22
10 21 0.16
12 7 0.05
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (8 bp):
ATTATAAT
Found at i:70483 original size:18 final size:19
Alignment explanation
Indices: 70450--70485 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70440 AGTTAATTGA
*
70450 CTTGTTCTAATAAATTAAG
1 CTTGTACTAATAAATTAAG
70469 CTTGTACTAAT-AATTAA
1 CTTGTACTAATAAATTAA
70486 TAGTATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (19 bp):
CTTGTACTAATAAATTAAG
Found at i:70577 original size:26 final size:25
Alignment explanation
Indices: 70548--70625 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
70538 TTAAATCTCT
*
70548 ATAAATAATATTATTTATATTATATG
1 ATAAATAATA-TATTTATATTATATA
* * * *
70574 ATAATTATTATATATATAATTAGATA
1 ATAAATAATATATTTAT-ATTATATA
70600 ATAAATAAGTAATATTTAT-TTATATA
1 ATAAATAA-T-ATATTTATATTATATA
70626 TTTATAGAGA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
25 6 0.15
26 26 0.65
27 1 0.03
28 7 0.17
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (25 bp):
ATAAATAATATATTTATATTATATA
Found at i:70599 original size:23 final size:23
Alignment explanation
Indices: 70552--70601 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
70542 ATCTCTATAA
* *
70552 ATAA-TATTATTTATATTATATG
1 ATAATTATTATATATATAATATG
70574 ATAATTATTATATATATAAT-TAG
1 ATAATTATTATATATATAATAT-G
70597 ATAAT
1 ATAAT
70602 AAATAAGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (23 bp):
ATAATTATTATATATATAATATG
Found at i:71414 original size:34 final size:32
Alignment explanation
Indices: 71340--71422 Score: 87
Period size: 34 Copynumber: 2.5 Consensus size: 32
71330 TTAGATTAAG
71340 AAATAATTTAATATAAACCATATTAAAATAAT
1 AAATAATTTAATATAAACCATATTAAAATAAT
* * *
71372 AAATTAATTTATTATTTAATCATATTAAAATAAAT
1 AAA-TAATTTAATA-TAAACCATATTAAAAT-AAT
* *
71407 TAATAATTAAAT-TAAA
1 AAATAATTTAATATAAA
71423 ATTAAAATCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
32 6 0.15
33 9 0.22
34 21 0.51
35 5 0.12
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.40
Consensus pattern (32 bp):
AAATAATTTAATATAAACCATATTAAAATAAT
Found at i:71430 original size:12 final size:11
Alignment explanation
Indices: 71395--71428 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
71385 ATTTAATCAT
71395 ATTAAAA-TAA
1 ATTAAAATTAA
71405 ATTAATAATTAA
1 ATTAA-AATTAA
71417 ATTAAAATTAA
1 ATTAAAATTAA
71428 A
1 A
71429 ATCCTTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.23
11 9 0.41
12 8 0.36
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
ATTAAAATTAA
Found at i:71544 original size:16 final size:17
Alignment explanation
Indices: 71523--71560 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
71513 AAAGGTAATA
71523 AATTAGTATTATTA-TT
1 AATTAGTATTATTATTT
71539 AATTAGTATTATTATTT
1 AATTAGTATTATTATTT
71556 AATTA
1 AATTA
71561 TTAATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
AATTAGTATTATTATTT
Found at i:72106 original size:24 final size:24
Alignment explanation
Indices: 72078--72131 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
72068 AAATATTTAA
* *
72078 ATTTTATTTATTATTAATTAAA-AT
1 ATTTTAATAATTATT-ATTAAATAT
72102 ATTTTTAATAATTATTATTAAATAT
1 A-TTTTAATAATTATTATTAAATAT
72127 ATTTT
1 ATTTT
72132 TACTAGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
ATTTTAATAATTATTATTAAATAT
Found at i:72149 original size:24 final size:25
Alignment explanation
Indices: 72087--72149 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
72077 AATTTTATTT
* *
72087 ATTATTAATTAAAATATTTTTAATA
1 ATTATTATTTAATATATTTTTAATA
* *
72112 ATTATTATTAAATATATTTTTACTA
1 ATTATTATTTAATATATTTTTAATA
*
72137 GTTA-TATTTAATA
1 ATTATTATTTAATA
72150 CTAATAATTA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 8 0.25
25 24 0.75
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (25 bp):
ATTATTATTTAATATATTTTTAATA
Found at i:72690 original size:27 final size:29
Alignment explanation
Indices: 72653--72734 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 29
72643 TTTAAATTAA
*
72653 TTAATAAAAATCA-ATAATTAA-TATAA-T
1 TTAATATAAAT-AGATAATTAATTATAATT
*
72680 TTAATATAAATAGATTATTAATTATAATTT
1 TTAATATAAATAGATAATTAATTATAA-TT
72710 TTAATAT-AATA-ATATATTATATTAT
1 TTAATATAAATAGATA-ATTA-ATTAT
72735 TTGAAATAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
26 1 0.02
27 17 0.37
28 7 0.15
29 8 0.17
30 13 0.28
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (29 bp):
TTAATATAAATAGATAATTAATTATAATT
Found at i:74693 original size:16 final size:16
Alignment explanation
Indices: 74653--74696 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
74643 ATATCTATTA
*
74653 ATTAATAAAAATCAAT
1 ATTAATAAATATCAAT
*
74669 ATTCATAAATAT-AAT
1 ATTAATAAATATCAAT
74684 ATTAATTAAATAT
1 ATTAA-TAAATAT
74697 GTTTATTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 7 0.29
16 17 0.71
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTAATAAATATCAAT
Found at i:74884 original size:19 final size:16
Alignment explanation
Indices: 74842--74886 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 16
74832 TATAAATTTA
74842 AATAATTA-ATATTAT
1 AATAATTATATATTAT
74857 AATAATTATATATTATT
1 AATAATTATATATTA-T
74874 AATTAATT-TATAT
1 AA-TAATTATATAT
74887 CTAAATTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 8 0.30
16 6 0.22
17 8 0.30
18 5 0.19
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
AATAATTATATATTAT
Found at i:75230 original size:21 final size:21
Alignment explanation
Indices: 75179--75234 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
75169 TTTGTAATTT
* *
75179 TTTATTAAATTAATCTTATAA
1 TTTATTTAATTAATATTATAA
* ** *
75200 ATTAACTAATTAATATTATTA
1 TTTATTTAATTAATATTATAA
75221 TTTATTTAA-TAATA
1 TTTATTTAATTAATA
75235 GTTGATATAA
Statistics
Matches: 26, Mismatches: 9, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
20 5 0.19
21 21 0.81
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTATTTAATTAATATTATAA
Found at i:75501 original size:17 final size:18
Alignment explanation
Indices: 75433--75498 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 18
75423 TTGATATATT
75433 ATTATTAAATTAATATATCA
1 ATTATTAAATTAATA-AT-A
*
75453 ATATATTAAATTGAACAAT-
1 AT-TATTAAATT-AATAATA
75472 A-TATTTATAATTAATAATA
1 ATTA-TTA-AATTAATAATA
75491 ATTATTAA
1 ATTATTAA
75499 TTATTAGTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
17 2 0.05
18 9 0.24
19 9 0.24
20 4 0.11
21 11 0.29
22 3 0.08
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (18 bp):
ATTATTAAATTAATAATA
Found at i:76334 original size:182 final size:179
Alignment explanation
Indices: 75960--76538 Score: 484
Period size: 182 Copynumber: 3.2 Consensus size: 179
75950 TGTATGTTGA
* ** * * *
75960 AAAACAATTGTTTTATGACAAAATGAAAGGT-AATAATGATTTGAAATAGATAATTGTTCAAATG
1 AAAACAATTGTTTTATGACAAAA-CAAAAATCAA-AATGATTTTAAATAGATAATTATTCAAATA
* * * ** *
76024 A-CTATAATTATTTAAACTAAGTCTG-TAAACTGATTTATTTTT-TAA-AT-CT-C---TTAATT
64 ATC-ATAACTATTTGAACTAA-T-TGACAAACAAATTTATTTTTCAAATATCCTACTTATTAATT
* * * * * * * * *
76080 TTCAAAATATTAAGAAAAGTAGTATTATTTTATTTTGGATAAACTTTTGTGAACT
126 TTCAAAATATTAA-TAAATTAGTATTATTTTCTTTCGAATAAGCTTATATGAATT
* * *
76135 AAAACAATTGTTTTATGACAAAACAAAAATTCACAATGATTTTAAATAGATAATTGTTCAAATAG
1 AAAACAATTGTTTTATGACAAAACAAAAA-TCAAAATGATTTTAAATAGATAATTATTCAAATAA
** * *
76200 TCATAACTATTTGAACTTGTTCGATAAACAAATTTAGTTTTTCAAATATCCTGCTTATTAATCTT
65 TCATAACTATTTGAACTAATT-GACAAACAAATTTA-TTTTTCAAATATCCTACTTATTAAT-TT
* * *
76265 TCAAAA-GTTAATATATTAGTATTATTTTCTTTCGAATAAGCTTGTATGAATT
127 TCAAAATATTAATAAATTAGTATTATTTTCTTTCGAATAAGCTTATATGAATT
* * ** * * * *
76317 GAAACAATTATTTTATGATTAAACAAAAGGTCAAAACGATTTGAAATAGATAATTATTCTAATAA
1 AAAACAATTGTTTTATGACAAAACAAAA-ATCAAAATGATTTTAAATAGATAATTATTCAAATAA
* * * * * *
76382 TCTTAACTATTTGAACTAATTGGCAAACACATTTATTTTTTAAATCTCTTACTTATTAATTTTCA
65 TCATAACTATTTGAACTAATTGACAAACAAATTTATTTTTCAAATATCCTACTTATTAATTTTCA
* * *
76447 AAATATTATTAAATTAGTATTA--TTCTTATCTGAATCAGCTTATATG-ATAA
130 AAATATTAATAAATTAGTATTATTTTCTT-TC-GAATAAGCTTATATGAAT-T
* *
76497 AAAACAATTGTTTTATGACAAAACAAAGATCATAATGATTTT
1 AAAACAATTGTTTTATGACAAAACAAAAATCAAAATGATTTT
76539 TGAAATATTA
Statistics
Matches: 324, Mismatches: 61, Indels: 34
0.77 0.15 0.08
Matches are distributed among these distances:
173 1 0.00
174 5 0.02
175 75 0.23
176 7 0.02
177 2 0.01
178 7 0.02
179 24 0.07
180 73 0.23
181 11 0.03
182 102 0.31
183 9 0.03
184 8 0.02
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.40
Consensus pattern (179 bp):
AAAACAATTGTTTTATGACAAAACAAAAATCAAAATGATTTTAAATAGATAATTATTCAAATAAT
CATAACTATTTGAACTAATTGACAAACAAATTTATTTTTCAAATATCCTACTTATTAATTTTCAA
AATATTAATAAATTAGTATTATTTTCTTTCGAATAAGCTTATATGAATT
Found at i:76783 original size:274 final size:274
Alignment explanation
Indices: 76272--76789 Score: 600
Period size: 274 Copynumber: 1.9 Consensus size: 274
76262 CTTTCAAAAG
* * * * **
76272 TTAATATATTAGTATTATTTTCTTTCGAATAAGCTTGTATGAATTGAAACAATTATTTTATGATT
1 TTAATAAAGTAGTATTATTTTATTTCGAATAAGCTTGTATGAACTGAAACAATTATTTTATGACA
* * * * *
76337 AAACAAAAGGTCAAAACGATTTGAAATAGATAATTATTCTAATAATCTTAACTATTTGAACTAAT
66 AAACAAAAGCTCAAAACAATTTAAAATAGATAATTATTCTAATAATCATAACTATTTGAAATAAT
* *
76402 TGGCAAACACATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTAT
131 TAGCAAACACATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTAT
** *
76467 TATTCTTATCTGAATCAGCTTATATGATAAAAAACAATTGTTTTATGACAAAACAAAGATCATAA
196 TATTCTTATCCAAATAAGCTTATATGATAAAAAACAATTGTTTTATGACAAAACAAAGATCATAA
76532 TGATTTTTGAAATA
261 TGATTTTTGAAATA
* * * * *
76546 TTAATAAAGTAGTATTATTTTATTTC-AGATAAGTTTTTATTAACTGAAACAATTGTTTTATTAC
1 TTAATAAAGTAGTATTATTTTATTTCGA-ATAAGCTTGTATGAACTGAAACAATTATTTTATGAC
* * * * *
76610 AAAACAAAATCTCAAAATAATTTAAAATAGATAATTATT-TAAATAGTCATATCTATTTGAAATT
65 AAAACAAAAGCTCAAAACAATTTAAAATAGATAATTATTCT-AATAATCATAACTATTTGAAATA
* * * * ** *
76674 GTTCAGTAAACAGATTTATTTTTTTAAATCTCTTGC-T-TTAATTTTTTGAAA-GTTAATAAATT
129 ATT-AGCAAACACATTTA-TTTTTTAAATCTCTTACTTATTAA-TTTTCAAAATATTAATAAATT
* **
76736 AGTATTATT-TTATTCCAAATAAGCTTATATGA-ACTAAAATGATTGTTTTATGAC
191 AGTATTATTCTTA-TCCAAATAAGCTTATATGATA-AAAAACAATTGTTTTATGAC
76790 TAAATAAAAG
Statistics
Matches: 201, Mismatches: 36, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
273 6 0.03
274 160 0.80
275 19 0.09
276 16 0.08
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.43
Consensus pattern (274 bp):
TTAATAAAGTAGTATTATTTTATTTCGAATAAGCTTGTATGAACTGAAACAATTATTTTATGACA
AAACAAAAGCTCAAAACAATTTAAAATAGATAATTATTCTAATAATCATAACTATTTGAAATAAT
TAGCAAACACATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTAATAAATTAGTAT
TATTCTTATCCAAATAAGCTTATATGATAAAAAACAATTGTTTTATGACAAAACAAAGATCATAA
TGATTTTTGAAATA
Found at i:76848 original size:180 final size:177
Alignment explanation
Indices: 76534--77102 Score: 590
Period size: 180 Copynumber: 3.2 Consensus size: 177
76524 GATCATAATG
* * * * * *
76534 ATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTCAGATAAGTTTTTATTAACTGAAACAAT
1 ATTTTTGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTATATGAACTGAAACAAT
* * ** * * *
76599 TGTTTTATTACAAAACAAAATCTCAAAATAATTTAAAATAGATAATTATT-TAAATAGTCATATC
66 TGTTTTATGACAAAATAAAAGATCAAAATGATTTGAAATAGATAATTATTCT-AATAGTCATAAC
* * * *
76663 TATTTGAAATTGTTCAGTAAACAGATTTATTTTTTTAAATCTCTTGCTTTA
130 TATTTGAACTAGTTAAGTAAACAGATTTA-TTTTTTAAATCTCTT--ATTA
* * **
76714 ATTTTTTGAAA-GTTAATAAATTAGTATTATTTTATTCCAAATAAGCTTATATGAACTAAAATGA
1 A-TTTTTGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTATATGAACTGAAACAA
* * * *
76778 TTGTTTTATGACTAAATAAAAGGAT-AGAATGATTTGAAATAGATAATTATTCTGATAGTCTTAA
65 TTGTTTTATGACAAAATAAAA-GATCAAAATGATTTGAAATAGATAATTATTCTAATAGTCATAA
** *
76842 CTATTTGAACTAGTTTGGCT-AACATATTTATTTTTTAAATCTCTTATTA
129 CTATTTGAACTAGTTAAG-TAAACAGATTTATTTTTTAAATCTCTTATTA
* * * * * **
76891 ATTTTTGAAATATTATTAAATCAGTATCATTTTAATCCAAATAAGCTTGTATGAAAGGAAACAAT
1 ATTTTTGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTATATGAACTGAAACAAT
* ** * * * *
76956 TGTTGTATGACAAAAT-AAAGATCATTATGATTTGAGATAAATAATTGTTCAAATAGTCATAACT
66 TGTTTTATGACAAAATAAAAGATCAAAATGATTTGAAATAGATAATTATTCTAATAGTCATAACT
* * *
77020 ATTTGAACTGGTTAAGTAAATAGATTTAGTTTTTAAATCTCTTATTA
131 ATTTGAACTAGTTAAGTAAACAGATTTATTTTTTAAATCTCTTATTA
** * **
77067 ATTTTCAAAATATTAATAAATCAAAATTATTTTATT
1 ATTTTTGAAATATTAATAAATTAGTATTATTTTATT
77103 TTGAATAATT
Statistics
Matches: 321, Mismatches: 61, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
175 4 0.01
176 113 0.35
177 61 0.19
179 15 0.05
180 116 0.36
181 12 0.04
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (177 bp):
ATTTTTGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTATATGAACTGAAACAAT
TGTTTTATGACAAAATAAAAGATCAAAATGATTTGAAATAGATAATTATTCTAATAGTCATAACT
ATTTGAACTAGTTAAGTAAACAGATTTATTTTTTAAATCTCTTATTA
Found at i:77132 original size:85 final size:87
Alignment explanation
Indices: 77035--77199 Score: 246
Period size: 89 Copynumber: 1.9 Consensus size: 87
77025 AACTGGTTAA
*
77035 GTAAATAGATTTAGTTTTTAAATCT-CT-TATTAATTTTCAAAATATTAATAAA-TCAAAATTAT
1 GTAAATAGATTTAGTTTTTAAATCTCCTCTATTAATTTGCAAAATATTAATAAAGT-AAAATTAT
77097 TTTATTTTGAATAATTCTATTTG
65 TTTATTTTGAATAATTCTATTTG
* **
77120 GTAAATAGATTTATTTTTTAAATCTCCTACCTATTAATTTGCAAAATATTAATAAAGTAGTATTA
1 GTAAATAGATTTAGTTTTTAAATCTCCT--CTATTAATTTGCAAAATATTAATAAAGTAAAATTA
77185 TTTTATTTTGAATAA
64 TTTTATTTTGAATAA
77200 ACTTGTATAA
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
85 24 0.34
86 2 0.03
89 44 0.62
90 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.48
Consensus pattern (87 bp):
GTAAATAGATTTAGTTTTTAAATCTCCTCTATTAATTTGCAAAATATTAATAAAGTAAAATTATT
TTATTTTGAATAATTCTATTTG
Found at i:77430 original size:181 final size:180
Alignment explanation
Indices: 77119--79348 Score: 1028
Period size: 181 Copynumber: 12.2 Consensus size: 180
77109 AATTCTATTT
** * * *
77119 GGTAAATAGATTTATTTTTTAAATCTCCTACCTATTAA-TTTGCAAAATATTAATAAAGTAGTAT
1 GGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTG--GAATATTAATAAATTAGTAT
* * * * * * *
77183 TATTTTATTTTGAATAAACTTGTATAAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATA
64 TATTTTATTTCGAATAAGCTTGTATAGACAGAAACAATTGGTTTATCACAAAACAAAAGGTCATA
* * * * * **
77248 ACTATTAGAAATAAAAAATTGTTCAAATAGTTATAACTATTTGAGCTTACTC
129 ACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACATGTTC
*
77300 GGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTGTTGGAATATTATTAAATTAGTATT
1 GGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATT-TTGGAATATTAATAAATTAGTATT
* * * ** *
77365 ATTTTATTTTGAATAAGCTTATATAGACAAAAACAATTGGTCCATCACAAAAGAAAAGGTCATAA
65 ATTTTATTTCGAATAAGCTTGTATAGACAGAAACAATTGGTTTATCACAAAACAAAAGGTCATAA
*
77430 CTATTTGAAATAGATAATTGTTCAAATAGTCA-AATCTATTTGAACATGTTC
130 CTATTTGAAATAAATAATTGTTCAAATAGTCATAA-CTATTTGAACATGTTC
*** * * * *
77481 AAAAAACAAATTTATTTTTAAAAT-TTTTACTTATTAAATTTTAGAATATTAATAAATT--TAAT
1 GGTAAATAGATTTATTTTTTAAATCTTTTACTTATT-AATTTTGGAATATTAATAAATTAGT-AT
* * * *
77543 TATTTTA-TTCGAAATAAGCTTGTATGGATAGAAACAATTAGTTTATCACAAAATAAAAAAGGTC
64 TATTTTATTTCG-AATAAGCTTGTATAGACAGAAACAATTGGTTTATCAC-AAA-ACAAAAGGTC
* * ** *
77607 ATAACTATTTGAAATAAATAATTGTTCAAATAATCAGAACCCTTCGAACATGTTC
126 ATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACATGTTC
** * * *
77662 GAAAAATAAATTTATTTTTAAAAT-TTTTACTTATTAAATTTTGGAATATTAATTAATT--TAAT
1 GGTAAATAGATTTATTTTTTAAATCTTTTACTTATT-AATTTTGGAATATTAATAAATTAGT-AT
* * *
77724 TATTTTA-TTCGAAACAAGCTTGTAT-GAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCA
64 TATTTTATTTCG-AATAAGCTTGTATAG-ACAGAAACAATTGGTTTATCACAAAACAAAAGGTCA
* * * *
77787 TAA-TGATTTGAAATATATAATTGTTCAAATAGTCATCACTATTTAAACTTGTTC
127 TAACT-ATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACATGTTC
* * * * * * *
77841 AGTAAACAGATTCATTTTTTTAAATCTTTTACTCATTAGTTTTAGAATATTAATAAATTAGTAAT
1 GGTAAATAGATTTA-TTTTTTAAATCTTTTACTTATTAATTTTGGAATATTAATAAATTAGTATT
* * * * * *
77906 ATTTTATTTCGAATAAGCCTATAT-GA-ATTGATACAATTGTTTTATGACAAAACAATAGGTCAT
65 ATTTTATTTCGAATAAGCTTGTATAGACA--GAAACAATTGGTTTATCACAAAACAAAAGGTCAT
* * * * * * *
77969 AA-TGATTTGAAATAGATAGTTATTCAAATAGTTATGAA-TATTTGAA-TTATAC
128 AACT-ATTTGAAATAAATAATTGTTCAAATAGTCAT-AACTATTTGAACATGTTC
** ** * * * * *
78021 AATTTCAAATTCAATT-GTTTTTAAATCTTTATTAACAAAATAAATCTATTTTTAGAATAAGTTA
1 --GGT-AAATAGATTTATTTTTTAAATC-TT-TT-AC----T-TAT-TAATTTTGGAAT-A-TTA
* * * * * * * * * * **
78085 TATCTAATTATAAGAAATAAGTAATAAGTTCCCAATTA--TTG-ATTTGA-ATAAACATATTTAA
52 -A--TAA--ATTAG-TATTA-T-TTTA-TTTCGAATAAGCTTGTA-TAGACAGAAACA-A-TTGG
* ** *** * * * * * * * ***
78146 TTAAT-ATTAAA-TTTAGG-AAT-ATTGATTTTAATTTAAAT-ATT-TT-AATTATTGATTTTTA
105 TTTATCACAAAACAAAAGGTCATAACT-ATTTGAA-ATAAATAATTGTTCAAATAGTCATAACTA
* *
78204 TTAATTAATA-GATATC
168 TT--TGAACATG-T-TC
* * ** * *
78220 --TAAAAAGATTTATTTTTTAGATC---TA-TTATTAATTTTTAAAATATTAATAGAGTAGTATT
1 GGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAA-TTTTGGAATATTAATAAATTAGTATT
* * * * * * * * * * *
78279 AATTTATTCCAAACAAACTTATATGGACAAAAACATTTGTTTTATAACAAAACAAAAGGTCATAA
65 ATTTTATTTCGAATAAGCTTGTATAGACAGAAACAATTGGTTTATCACAAAACAAAAGGTCATAA
* * * * *
78344 TTATTTGAAATAAATAATTGTTCAAATAATCATAAGTATTTGAAC-TACTTA
130 CTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACAT-GTTC
* * * * * *
78395 GGTAAGTAGAATCATTTGTTAAATC---T-CTTATTAATTTTTGAAATATTAATAAATTCA-TTT
1 GGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAA-TTTTGGAATATTAATAAATT-AGTAT
* * * * * *
78455 TATTTCATTAT-GAATAAGCTAGTAT-GA-ATTGAAAAAATTGTTTTATGACAAAATAAAAGGTC
64 TATTTTATT-TCGAATAAGCTTGTATAGACA--GAAACAATTGGTTTATCACAAAACAAAAGGTC
* * * * * * *
78517 ATAA-TGATTTAAAATAGATAATTGTTCATATGGTCTTAACTATTTAAAC-TAGTTT
126 ATAACT-ATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACAT-GTTC
* * * * * * * * * *
78572 AGCAAACAAATTTATTTTTTAAATCTCTTAGTTATTAATTTTTAGAGTATTATTAGATTAGTATT
1 GGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAA-TTTTGGAATATTAATAAATTAGTATT
* * * * * *
78637 ATTTTATTTTGAATAAGCTTGTAT-GAACATG-AATAATTGTTTTATGATAGAACAAAAAAGGTT
65 ATTTTATTTCGAATAAGCTTGTATAG-ACA-GAAACAATTGGTTTATCACA-AA-ACAAAAGG--
* * * *
78700 TATTTTTTAAATAACTGATTT-AAACTATACATTTGTTCAAATAGTCATAACTATTT-AA-ATGG
124 -------T-CATAACT-ATTTGAAA-TAAATAATTGTTCAAATAGTCATAACTATTTGAACAT--
*
78762 GTTT
177 GTTC
* * * * * *
78766 GATAAATAAATTTATTTTTAAAATTTTTTACTTATTAACTTTTGAAAGATTAATAAATTAGTATT
1 GGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAA-TTTTGGAATATTAATAAATTAGTATT
* * * * *
78831 ATTTTA-TTC---TGAAGCTTGTAT-GATAAAAAACAATT-GTTATATGACCAAACAAAAGGTAA
65 ATTTTATTTCGAAT-AAGCTTGTATAGA-CAGAAACAATTGGTT-TATCACAAAACAAAAGGTCA
* * * * * * * * *
78890 T-ATTGACTTCAAATAGATAATTGTTGAAATAGCCATGATTATTTGAAC-TAATTC
127 TAACT-ATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACAT-GTTC
* * * ** * *
78944 GGTAAACAGAATCA-TTTTTAAATCACTTACTTATTAATTTTTGGAATATTAATAAATTACTGTT
1 GGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAA-TTTTGGAATATTAATAAATTAGTATT
* * * * * *
79008 ATTTTATTTCGAATGAGCTTGTAT-GAACTGAGACAATTGTTTTATGACAAAACAAAATGTCATA
65 ATTTTATTTCGAATAAGCTTGTATAG-ACAGAAACAATTGGTTTATCACAAAACAAAAGGTCATA
* * ** *
79072 A-TGATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTTGTTT
129 ACT-ATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACATGTTC
* * * * * * * *
79124 AGTAAACAAATTAATTTTTTTAAA-CTCTTGCTTATTAATTTTTGAAATATTAAGAAATTAGTAT
1 GGTAAATAGATTTA-TTTTTTAAATCTTTTACTTATTAA-TTTTGGAATATTAATAAATTAGTAT
* * * * * * **
79188 TATTTTATTTTGGATAAGCTTTTAT-GAACTGAAACAATTGTTTTTTTGTCAAAACAAAAGGTCA
64 TATTTTATTTCGAATAAGCTTGTATAG-ACAGAAACAATTG-GTTTATCACAAAACAAAAGGTCA
* * *
79252 TAACGATTTTAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTGATT-
127 TAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACATG-TTC
* * *
79306 GGTAAACAGATTTATTTTTTCATATCTTTTGCTTATTAATTTT
1 GGTAAATAGATTTATTTTTT-AAATCTTTTACTTATTAATTTT
79349 TTGAATGTTT
Statistics
Matches: 1592, Mismatches: 334, Indels: 245
0.73 0.15 0.11
Matches are distributed among these distances:
172 7 0.00
173 8 0.01
174 9 0.01
175 20 0.01
176 21 0.01
177 200 0.13
178 63 0.04
179 110 0.07
180 159 0.10
181 581 0.36
182 112 0.07
183 43 0.03
184 3 0.00
188 1 0.00
189 10 0.01
190 18 0.01
191 24 0.02
192 4 0.00
193 13 0.01
194 97 0.06
195 24 0.02
196 3 0.00
197 19 0.01
198 16 0.01
199 9 0.01
200 11 0.01
201 7 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
GGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTGGAATATTAATAAATTAGTATTA
TTTTATTTCGAATAAGCTTGTATAGACAGAAACAATTGGTTTATCACAAAACAAAAGGTCATAAC
TATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACATGTTC
Found at i:77798 original size:360 final size:360
Alignment explanation
Indices: 77164--77998 Score: 942
Period size: 360 Copynumber: 2.3 Consensus size: 360
77154 TAATTTGCAA
* * * *
77164 AATATTAATAAA-GTAGTATTATTTTATTTTGAATAAACTTGTATAAATAGAAACAATTGTTTTA
1 AATATTAATAAATTTA--ATTATTTTATTTCGAATAAGCTTGTATGAATAGAAACAATTGTTTTA
* * * * * * * * *
77228 TGACAAAACAAAAGATCATAACTATTAGAAATAAAAAATTGTTCAAATAGTTATAACTATTTGAG
64 TGACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAATCAGAACCATTCGAA
* ** * *
77293 CTTACTCGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTGTTGGAATATTATTAAAT
129 CATACTCGAAAAATAAATTTATTTTTAAAATCTTTTACTTATTAATTGTTGGAATATTATTAAAT
* * *
77358 TAGTATTATTTTATTTTGAATAAGCTTATATAGACAAAAACAATTGGTCCATCACAAAAGAAAAG
194 TAG-ATTATTTTATTTCGAACAAGCTTATATAGACAAAAACAATTGGTCCATCACAAAACAAAAG
*
77423 GTCATAACTATTTGAAATAGATAATTGTTCAAATAGTCA-AATCTATTTGAACATGTTCAAAAAA
258 GTCATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAA-CTATTTAAACATGTTCAAAAAA
* *
77487 CAAATTTA-TTTTTAAAAT-TTTTACTTATTAAATTTTAG
322 CAAATTCATTTTTTAAAATCTTTTACTCATT-AATTTTAG
*
77525 AATATTAATAAATTTAATTATTTTA-TTCGAAATAAGCTTGTATGGATAGAAACAATTAG-TTTA
1 AATATTAATAAATTTAATTATTTTATTTCG-AATAAGCTTGTATGAATAGAAACAATT-GTTTTA
* * *
77588 TCACAAAATAAAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAATCAGAACCCTTCG
64 TGAC-AAA-ACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAATCAGAACCATTCG
**
77653 AACATGTTCGAAAAATAAATTTATTTTTAAAAT-TTTTACTTATTAAATT-TTGGAATATTAATT
127 AACATACTCGAAAAATAAATTTATTTTTAAAATCTTTTACTTATT-AATTGTTGGAATATT-ATT
* * * * ** *
77716 AATTTA-ATTATTTTA-TTCGAAACAAGCTTGTAT-GAACAGAAACAATTGTTTTATGACAAAAC
190 AAATTAGATTATTTTATTTCG-AACAAGCTTATATAG-ACAAAAACAATTGGTCCATCACAAAAC
* * *
77778 AAAAGGTCATAA-TGATTTGAAATATATAATTGTTCAAATAGTCATCACTATTTAAACTTGTTCA
253 AAAAGGTCATAACT-ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTAAACATGTTCA
** * * *
77842 GTAAACAGATTCATTTTTTTAAATCTTTTACTCATTAGTTTTAG
317 AAAAACAAATTCATTTTTTAAAATCTTTTACTCATTAATTTTAG
* * * *
77886 AATATTAATAAATTAGTAA-TATTTTATTTCGAATAAGCCTATATGAATTGATACAATTGTTTTA
1 AATATTAATAAATT--TAATTATTTTATTTCGAATAAGCTTGTATGAATAGAAACAATTGTTTTA
* * * *
77950 TGACAAAACAATAGGTCATAA-TGATTTGAAATAGATAGTTATTCAAATA
64 TGACAAAACAAAAGGTCATAACT-ATTTGAAATAAATAATTGTTCAAATA
77999 GTTATGAATA
Statistics
Matches: 400, Mismatches: 56, Indels: 37
0.81 0.11 0.08
Matches are distributed among these distances:
359 9 0.02
360 181 0.45
361 72 0.18
362 131 0.33
363 7 0.02
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.39
Consensus pattern (360 bp):
AATATTAATAAATTTAATTATTTTATTTCGAATAAGCTTGTATGAATAGAAACAATTGTTTTATG
ACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAATCAGAACCATTCGAACA
TACTCGAAAAATAAATTTATTTTTAAAATCTTTTACTTATTAATTGTTGGAATATTATTAAATTA
GATTATTTTATTTCGAACAAGCTTATATAGACAAAAACAATTGGTCCATCACAAAACAAAAGGTC
ATAACTATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTAAACATGTTCAAAAAACAAA
TTCATTTTTTAAAATCTTTTACTCATTAATTTTAG
Found at i:79262 original size:182 final size:181
Alignment explanation
Indices: 78245--79349 Score: 928
Period size: 177 Copynumber: 6.1 Consensus size: 181
78235 TTTAGATCTA
* * * * **** * * * * **
78245 TTATTAATTTTTAAAATATTAATAGAGTAGTATTAATTTATTCCAAACAAACTTATATGGACAAA
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAACTGA
* * * * * *
78310 AACATTTGTTTTATAACAAAACAAAAGGTCATAATTATTTGAAATAAATAATTGTTCAAATAATC
66 AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTGTTCAAATAGTC
* ** * ** * *
78375 ATAAGTATTTGAACTACTTAGGTAAGTAGAA-TCATTTGTTAAA--TC-T-C
131 ATAACTATTTGAACTTGTTTGGTAAACA-AATTTATTTTTTAAATCTCTTAC
* * * * * *
78422 TTATTAATTTTTGAAATATTAATAAATTCA-TTTTATTTCATTATGAATAAGCTAGTATGAATTG
1 TTATTAATTTTTGAAATATTAATAAATT-AGTATTATTTTATTTTGGATAAGCTTGTATGAACTG
* * * * *
78486 AAAAAATTGTTTTATGACAAAATAAAAGGTCATAATGATTTAAAATAGATAATTGTTCATATGGT
65 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTGTTCAAATAGT
* * * * * *
78551 CTTAACTATTTAAACTAGTTTAGCAAACAAATTTATTTTTTAAATCTCTTAG
130 CATAACTATTTGAACTTGTTTGGTAAACAAATTTATTTTTTAAATCTCTTAC
* * * *
78603 TTATTAATTTTT-AGAGTATTATTAGATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACAT
1 TTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAAC-T
* * * * * * *
78667 G-AATAATTGTTTTATGATAGAACAAAAAAGGTTTATTTTTTAAATAACTGATTTAAACTATACA
64 GAAACAATTGTTTTATGACA-AA-ACAAAAGG-TCA-----T-AATGA-T--TTTAAA-TAGATA
* * * * * * * *
78731 TTTGTTCAAATAGTCATAACTATTT-AAATGGGTTTGATAAATAAATTTATTTTTAAAATTTTTT
116 ATTGTTCAAATAGTCATAACTATTTGAACT-TGTTTGGTAAACAAATTTATTTTTTAAATCTCTT
78795 AC
180 AC
* * * **
78797 TTATTAACTTTTGAAAGATTAATAAATTAGTATTATTTTATTCT-G--AAGCTTGTATGATA-AA
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGA-ACTG
* * * * * * * *
78858 AAACAATTGTTATATGACCAAACAAAAGGTAATATTGACTTCAAATAGATAATTGTTGAAATAGC
65 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTGTTCAAATAGT
* * ** * * *
78923 CATGATTATTTGAACTAATTCGGTAAACAGAA-TCA-TTTTTAAATCACTTAC
130 CATAACTATTTGAACTTGTTTGGTAAACA-AATTTATTTTTTAAATCTCTTAC
* * * * * *
78974 TTATTAATTTTTGGAATATTAATAAATTACTGTTATTTTATTTCGAATGAGCTTGTATGAACTGA
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAACTGA
* *
79039 GACAATTGTTTTATGACAAAACAAAATGTCATAATGATTTTAAATAGATAATTGTTCAAATAGTC
66 AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTGTTCAAATAGTC
* * * *
79104 ATAACTATTTGAATTTGTTTAGTAAACAAATTAATTTTTTTAAA-CTCTTGC
131 ATAACTATTTGAACTTGTTTGGTAAACAAATTTA-TTTTTTAAATCTCTTAC
* *
79155 TTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTGGATAAGCTTTTATGAACTGA
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAACTGA
* * * *
79220 AACAATTGTTTTTTTGTCAAAACAAAAGGTCATAACGATTTTAAATAAATAATTGTTCAAATAGT
66 AACAATTG-TTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTGTTCAAATAGT
* * * * *
79285 CATAACTATTTGAACTTGATTGGTAAACAGATTTATTTTTTCATATCTTTTGC
130 CATAACTATTTGAACTTGTTTGGTAAACAAATTTATTTTTT-AAATCTCTTAC
79338 TTATTAATTTTT
1 TTATTAATTTTT
79350 TGAATGTTTA
Statistics
Matches: 732, Mismatches: 158, Indels: 70
0.76 0.16 0.07
Matches are distributed among these distances:
176 2 0.00
177 179 0.24
178 35 0.05
179 15 0.02
180 93 0.13
181 141 0.19
182 98 0.13
183 26 0.04
184 2 0.00
188 2 0.00
189 8 0.01
190 6 0.01
191 27 0.04
192 1 0.00
193 8 0.01
194 88 0.12
195 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (181 bp):
TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAACTGA
AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTGTTCAAATAGTC
ATAACTATTTGAACTTGTTTGGTAAACAAATTTATTTTTTAAATCTCTTAC
Found at i:79534 original size:23 final size:24
Alignment explanation
Indices: 79508--79567 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 24
79498 ACTATTTTAA
79508 TATAAAATATA-AAAT-TAATAATT
1 TATAAAATATATAAATATAAT-ATT
*
79531 TATATAATATTATAAATATAATATT
1 TATAAAATA-TATAAATATAATATT
*
79556 AAT-AAATATATA
1 TATAAAATATATA
79568 GTATTCAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 12 0.39
24 6 0.19
25 9 0.29
26 4 0.13
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
TATAAAATATATAAATATAATATT
Found at i:79551 original size:14 final size:15
Alignment explanation
Indices: 79512--79565 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
79502 TTTTAATATA
*
79512 AAATATAAAATTAAT
1 AAATATAATATTAAT
79527 AATTTATATAATATT-AT
1 AA---ATATAATATTAAT
79544 AAATATAATATTAAT
1 AAATATAATATTAAT
79559 AAATATA
1 AAATATA
79566 TAGTATTCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
14 10 0.29
15 11 0.32
17 4 0.12
18 9 0.26
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AAATATAATATTAAT
Found at i:79572 original size:17 final size:16
Alignment explanation
Indices: 79512--79578 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 16
79502 TTTTAATATA
*
79512 AAATATA-AAATTAAT
1 AAATATATATATTAAT
*
79527 AATTTATATAATATT-AT
1 AA-ATATAT-ATATTAAT
79544 AAATATA-ATATTAAT
1 AAATATATATATTAAT
79559 AAATATATAGTATTCAAT
1 AAATATATA-TATT-AAT
79577 AA
1 AA
79579 CAATTAGATA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
14 5 0.12
15 11 0.26
16 9 0.21
17 8 0.19
18 9 0.21
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (16 bp):
AAATATATATATTAAT
Found at i:80077 original size:14 final size:14
Alignment explanation
Indices: 80055--80102 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
80045 TTTATATATA
80055 ATAATAATTATTAT
1 ATAATAATTATTAT
* *
80069 ATTATAATTATCAT
1 ATAATAATTATTAT
80083 ATAATAATATATTAT
1 ATAATAAT-TATTAT
*
80098 CTAAT
1 ATAAT
80103 TTTTATAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 19 0.68
15 9 0.32
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (14 bp):
ATAATAATTATTAT
Found at i:80534 original size:27 final size:27
Alignment explanation
Indices: 80503--80600 Score: 73
Period size: 27 Copynumber: 3.7 Consensus size: 27
80493 ATAATAATTA
*
80503 TTAATTATTAGGATTAATATATAATAT
1 TTAATTATTATGATTAATATATAATAT
*
80530 TTAA-TATCTATAATTAATA-ATAATTAAT
1 TTAATTAT-TATGATTAATATATAA-T-AT
*
80558 TT-ATTATTATTATT-ATATAATTAATA-
1 TTAATTATTATGATTAATAT-A-TAATAT
*
80584 TTATTTATTA-GATTAAT
1 TTAATTATTATGATTAAT
80601 TGTATATTAA
Statistics
Matches: 57, Mismatches: 5, Indels: 18
0.71 0.06 0.22
Matches are distributed among these distances:
26 15 0.26
27 30 0.53
28 9 0.16
29 3 0.05
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (27 bp):
TTAATTATTATGATTAATATATAATAT
Found at i:81593 original size:23 final size:22
Alignment explanation
Indices: 81567--81609 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
81557 AATAGTTATA
*
81567 TTATAAGTTTATTTATTAATTAG
1 TTATAAGTTTAATTA-TAATTAG
*
81590 TTATAATTTTAATTATAATT
1 TTATAAGTTTAATTATAATT
81610 TATATCTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (22 bp):
TTATAAGTTTAATTATAATTAG
Found at i:81636 original size:23 final size:23
Alignment explanation
Indices: 81610--81687 Score: 67
Period size: 23 Copynumber: 3.5 Consensus size: 23
81600 AATTATAATT
*
81610 TATATCTTA-ATATAATAAATTTA
1 TATATATTATATATAAT-AATTTA
*
81633 TATATATTATATATAATATTTTA
1 TATATATTATATATAATAATTTA
*
81656 TAT-TATT-TAT-TAATTTAATTAA
1 TATATATTATATATAA--TAATTTA
81678 T-TATATTATA
1 TATATATTATA
81688 AAGTTAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
20 3 0.07
21 4 0.09
22 14 0.30
23 18 0.39
24 7 0.15
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (23 bp):
TATATATTATATATAATAATTTA
Found at i:81648 original size:21 final size:21
Alignment explanation
Indices: 81606--81698 Score: 58
Period size: 21 Copynumber: 4.6 Consensus size: 21
81596 TTTTAATTAT
* *
81606 AATTTATATCT-TAATATAATA
1 AATTTATATATATTATAT-ATA
81627 AATTTATATATATTATATATA
1 AATTTATATATATTATATATA
81648 ATATTT-TATATTATT-TAT-T-
1 A-ATTTATATA-TATTATATATA
81667 AATTTA-AT-TAATTATATTATA
1 AATTTATATAT-ATTATA-TATA
*
81688 AAGTTA-ATATA
1 AATTTATATATA
81699 AACAATAATT
Statistics
Matches: 59, Mismatches: 3, Indels: 20
0.72 0.04 0.24
Matches are distributed among these distances:
16 1 0.02
17 3 0.05
18 8 0.14
19 2 0.03
20 2 0.03
21 29 0.49
22 14 0.24
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (21 bp):
AATTTATATATATTATATATA
Found at i:82168 original size:21 final size:22
Alignment explanation
Indices: 82124--82165 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
82114 AATTAATATT
*
82124 TTAAGTTATTATTAAATATTAA
1 TTAAGTTATTATTAAACATTAA
82146 TTAA-TTATT-TTAAACATTAA
1 TTAAGTTATTATTAAACATTAA
82166 ATTTTAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 5 0.26
22 4 0.21
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
TTAAGTTATTATTAAACATTAA
Found at i:82191 original size:27 final size:27
Alignment explanation
Indices: 82134--82185 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
82124 TTAAGTTATT
*
82134 ATTAAATATTAATTAATTATTTTAAAC
1 ATTAAATATTAATTAATTATATTAAAC
*
82161 ATTAAATTTTAA-TAATTATAATTAA
1 ATTAAATATTAATTAATTAT-ATTAA
82186 TAATTATCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (27 bp):
ATTAAATATTAATTAATTATATTAAAC
Found at i:82210 original size:13 final size:13
Alignment explanation
Indices: 82140--82211 Score: 51
Period size: 13 Copynumber: 5.3 Consensus size: 13
82130 TATTATTAAA
82140 TATTAATTAATTAT
1 TATTAA-TAATTAT
82154 T-TTAA-ACATTAAAT
1 TATTAATA-ATT--AT
82168 T-TTAATAATTAT
1 TATTAATAATTAT
*
82180 AATTAATAATTATCT
1 TATTAATAATTA--T
*
82195 TATTAATAGTTAT
1 TATTAATAATTAT
82208 TATT
1 TATT
82212 TAAAGTAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 15
0.73 0.05 0.23
Matches are distributed among these distances:
11 1 0.02
12 5 0.10
13 19 0.40
14 11 0.23
15 12 0.25
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (13 bp):
TATTAATAATTAT
Found at i:83953 original size:180 final size:180
Alignment explanation
Indices: 83517--84113 Score: 596
Period size: 180 Copynumber: 3.3 Consensus size: 180
83507 TTGATCGATA
** * * *
83517 AGAAACAATTGTTTTACAACAAAATAATAT-GTCATAACAATTTGAAATAGATAATAGTTCAAAT
1 AGAAACAATTGTTTTATGACAAAACAA-ATGGTCATAACGATTTGAAATAGATAATTGTTCAAAT
* * * * * * *
83581 GGACATGACTATTTGAATTGGTTCGATAAACTAATTAATTTTTTAAATCTTCA-ACTTATTAATT
65 AGTCATAACTATTTGAATTGCTT-GGTAAACAAATTTATTTTTTAAATCTT-ATACTTATTAATT
* * * *
83645 TTTAGAATGTTAATATATTAGTATTATTTTATTCCTAATAAACTTGTATGAAT
128 TTTGGAATATTAATATATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT
* * * * * * *
83698 GGAAACAATTGTTTTATAACAAAACAAAAGATCATAACGATTTGAAATAAATAATTATTCAAACA
1 AGAAACAATTGTTTTATGACAAAACAAATGGTCATAACGATTTGAAATAGATAATTGTTCAAATA
* * ** *
83763 ATCGTAACTATTTGAACTCACTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAA-TTT
66 GTCATAACTATTTGAA-TTGCTTGGTAAACAAATTTATTTTTTAAATCTTATACTTATTAATTTT
* * *
83827 TGGAATATTAAT-TAGTTAGAATTATTTTATTCCAAATAAGCTTGTTTAAAT
130 TGGAATATTAATATA-TTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT
* * * *
83878 AAAAATAATTGGTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAATGGTCATAACGATTTGAAATAGATAATTGTTCAAATA
* * * * ** * * **
83943 GTCATAACTATTTGAATGTGTTTAGAAAATAGCTTTATCTTCTAAA-AGTATACTTATTAATTTT
66 GTCATAACTATTTGAAT-TGCTTGGTAAACAAATTTATTTTTTAAATCTTATACTTATTAATTTT
* * * *
84007 TGGAATATTAATAAATTTA-TATTATTTTATTCAAAATATGCTTGCATGAAT
130 TGGAATATTAATATA-TTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT
* * * *
84058 AGAACCAGTTGTTTTATGACAAAACAAAAT-GTCATAATGTTTTGAAATAGATAATT
1 AGAAACAATTGTTTTATGACAAAAC-AAATGGTCATAACGATTTGAAATAGATAATT
84114 ATTTATTGAT
Statistics
Matches: 339, Mismatches: 69, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
179 14 0.04
180 217 0.64
181 105 0.31
182 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.40
Consensus pattern (180 bp):
AGAAACAATTGTTTTATGACAAAACAAATGGTCATAACGATTTGAAATAGATAATTGTTCAAATA
GTCATAACTATTTGAATTGCTTGGTAAACAAATTTATTTTTTAAATCTTATACTTATTAATTTTT
GGAATATTAATATATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT
Found at i:84968 original size:10 final size:10
Alignment explanation
Indices: 84884--85055 Score: 61
Period size: 10 Copynumber: 16.7 Consensus size: 10
84874 TAATAATTGA
84884 TATT-ATTAT
1 TATTAATTAT
* *
84893 TATCAATAAT
1 TATTAATTAT
* *
84903 AATTAATTAA
1 TATTAATTAT
*
84913 AATT-ATTAT
1 TATTAATTAT
*
84922 ATACT-ATTAT
1 -TATTAATTAT
*
84932 T-TTAAATAGT
1 TATTAATTA-T
84942 TATTAA-TAT
1 TATTAATTAT
84951 TATTAATTAT
1 TATTAATTAT
84961 TATTAATTATT
1 TATTAATTA-T
*
84972 TAGTGTTAATAAT
1 TA---TTAATTAT
84985 TATTAA-TAT
1 TATTAATTAT
* *
84994 ACATTATATTGT
1 -TATTA-ATTAT
*
85006 ATATT-ATAAT
1 -TATTAATTAT
* *
85016 TAAATAATTTAA
1 T-ATTAA-TTAT
*
85028 TATTAATAAT
1 TATTAATTAT
85038 TATTAATTAT
1 TATTAATTAT
85048 TAATTAAT
1 T-ATTAAT
85056 ACTCTAACTT
Statistics
Matches: 121, Mismatches: 25, Indels: 32
0.68 0.14 0.18
Matches are distributed among these distances:
8 1 0.01
9 21 0.17
10 62 0.51
11 19 0.16
12 9 0.07
13 3 0.02
14 6 0.05
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (10 bp):
TATTAATTAT
Found at i:86127 original size:19 final size:19
Alignment explanation
Indices: 86079--86132 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
86069 GATATCTAAC
*
86079 AATTAAATCAATTAGATTTA
1 AATTAAAT-ATTTAGATTTA
*
86099 AATAAAATATTTA-ATTTA
1 AATTAAATATTTAGATTTA
*
86117 TAATTAAATATATAGA
1 -AATTAAATATTTAGA
86133 ATTATATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 5 0.18
19 15 0.54
20 8 0.29
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.41
Consensus pattern (19 bp):
AATTAAATATTTAGATTTA
Found at i:86166 original size:25 final size:24
Alignment explanation
Indices: 86119--86177 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
86109 TTAATTTATA
86119 ATTAAATATATAGAATTATATATT
1 ATTAAATATATAGAATTATATATT
*
86143 ATTATAATATATA-AATTTTA-ATAT
1 ATTA-AATATATAGAATTATATAT-T
*
86167 ATTCAATATAT
1 ATTAAATATAT
86178 TCATGACTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 9 0.29
24 14 0.45
25 8 0.26
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
ATTAAATATATAGAATTATATATT
Found at i:86166 original size:27 final size:26
Alignment explanation
Indices: 86103--86169 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 26
86093 GATTTAAATA
* *
86103 AAATATTTAATTTATAATTAAATATAT
1 AAAT-TTTAATATATTATTAAATATAT
86130 AGAA--TT-ATATATTATTATAATATAT
1 A-AATTTTAATATATTATTA-AATATAT
86155 AAATTTTAATATATT
1 AAATTTTAATATATT
86170 CAATATATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
24 11 0.33
25 10 0.30
26 2 0.06
27 8 0.24
28 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (26 bp):
AAATTTTAATATATTATTAAATATAT
Found at i:86643 original size:25 final size:25
Alignment explanation
Indices: 86615--86662 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
86605 TTGGATTTAA
*
86615 TAAAT-ATAATTATTTAATTAAATAT
1 TAAATAAT-ATTAATTAATTAAATAT
*
86640 TAAATAATATTAATTGATTAAAT
1 TAAATAATATTAATTAATTAAAT
86663 TAAAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
TAAATAATATTAATTAATTAAATAT
Found at i:87035 original size:219 final size:216
Alignment explanation
Indices: 86733--87172 Score: 769
Period size: 219 Copynumber: 2.0 Consensus size: 216
86723 TATTATATAC
*
86733 TAATTTATGACCTATTAATTTATATATAATAATTATTATATTATTAATTTATTAATAAATTATAA
1 TAATTTATGACCTATTAATTTATATATAATAATAATTATATTATTAATTTATTAATAAATTATAA
**
86798 ATATTAGGTTTATAAATAAATTTAACATTTATTTAAAGTTATATATAATTTATAAATATATTACA
66 ATATTAGGTTTATAAATAAATTTAACATTTATTTAAAAATATATATAATTTATAAATATATTACA
*
86863 TTATATATTTAATAAAAAATAATAGTTATCAAATAGTCATATATAATAATTTATATTATTTAATA
131 TTA-ATAATTAATAAAAAATAATA-TTATCAAATAGT-ATATATAATAATTTATATTA-TTAATA
86928 AATATA-TATTATTAATTAAAATAATA
192 AATATATTATTATTAATT--AATAATA
86954 TAATTTATGACCTATTAATTTATATATAAT-ATAATTATATTATTAATTTA-TAATAAATTATAA
1 TAATTTATGACCTATTAATTTATATATAATAATAATTATATTATTAATTTATTAATAAATTATAA
87017 ATATTAGGTTTATAAATAAATTTAACATTTATTTAAAAATATATATAATTTATAAATATATTACA
66 ATATTAGGTTTATAAATAAATTTAACATTTATTTAAAAATATATATAATTTATAAATATATTACA
87082 TTAATAATTAATAAAAAATAATATTATCAAATAGTATATATAATAATTTATATTATTAATAAATA
131 TTAATAATTAATAAAAAATAATATTATCAAATAGTATATATAATAATTTATATTATTAATAAATA
87147 TATTATTATTAATTAATAATA
196 TATTATTATTAATTAATAATA
87168 TAATT
1 TAATT
87173 ATATTGTATT
Statistics
Matches: 214, Mismatches: 4, Indels: 9
0.94 0.02 0.04
Matches are distributed among these distances:
214 12 0.06
215 12 0.06
216 31 0.14
217 12 0.06
218 19 0.09
219 79 0.37
220 19 0.09
221 30 0.14
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (216 bp):
TAATTTATGACCTATTAATTTATATATAATAATAATTATATTATTAATTTATTAATAAATTATAA
ATATTAGGTTTATAAATAAATTTAACATTTATTTAAAAATATATATAATTTATAAATATATTACA
TTAATAATTAATAAAAAATAATATTATCAAATAGTATATATAATAATTTATATTATTAATAAATA
TATTATTATTAATTAATAATA
Found at i:87088 original size:17 final size:17
Alignment explanation
Indices: 87049--87173 Score: 55
Period size: 17 Copynumber: 7.2 Consensus size: 17
87039 TAACATTTAT
87049 TTAA-AAATATATATAA
1 TTAATAAATATATATAA
*
87065 TTTATAAATATAT-TACA
1 TTAATAAATATATATA-A
* *
87082 TTAATAATTAATAAAAAATAA
1 TTAAT-A--AAT-ATATATAA
*
87103 TATTATCAAATAGTATAT-A
1 T-TAAT-AAATA-TATATAA
* *
87122 -TAAT-AATTTATATTA
1 TTAATAAATATATATAA
*
87137 TTAATAAATATATTATTA
1 TTAATAAATATA-TATAA
*
87155 TTAATTAATA-ATATAA
1 TTAATAAATATATATAA
87171 TTA
1 TTA
87174 TATTGTATTA
Statistics
Matches: 83, Mismatches: 13, Indels: 26
0.68 0.11 0.21
Matches are distributed among these distances:
14 5 0.06
15 4 0.05
16 16 0.19
17 22 0.27
18 15 0.18
19 2 0.02
20 9 0.11
21 4 0.05
22 6 0.07
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.44
Consensus pattern (17 bp):
TTAATAAATATATATAA
Found at i:87155 original size:18 final size:19
Alignment explanation
Indices: 87132--87174 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
87122 TAATAATTTA
87132 TATTATTAATAAAT-ATAT
1 TATTATTAATAAATAATAT
*
87150 TATTATTAATTAATAATAT
1 TATTATTAATAAATAATAT
*
87169 AATTAT
1 TATTAT
87175 ATTGTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATTAATAAATAATAT
Found at i:87177 original size:21 final size:19
Alignment explanation
Indices: 87123--87177 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 19
87113 TAGTATATAT
87123 AATAATTTATATTATTAATA
1 AATAA-TTATATTATTAATA
87143 AATATATTATTATTAATTAATA
1 AATA-ATTA-TATT-ATTAATA
87165 ATATAATTATATT
1 A-ATAATTATATT
87178 GTATTATCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
20 7 0.23
21 9 0.29
22 12 0.39
23 3 0.10
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AATAATTATATTATTAATA
Found at i:87183 original size:22 final size:22
Alignment explanation
Indices: 87129--87183 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
87119 ATATAATAAT
87129 TTATATTATTAATAAATATATTA
1 TTAT-TTATTAATAAATATATTA
*
87152 TTATTAATTAAT-AATATAATTA
1 TTATTTATTAATAAATAT-ATTA
87174 -TATTGTATTA
1 TTATT-TATTA
87184 TCTTATTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 9 0.32
22 15 0.54
23 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TTATTTATTAATAAATATATTA
Done.