Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167875.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66668
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
File 1 of 2
Found at i:355 original size:181 final size:180
Alignment explanation
Indices: 62--906 Score: 781
Period size: 181 Copynumber: 4.7 Consensus size: 180
52 TAATCTGTTT
* * * * * * * * *
62 ATACAAGCTTCTTTGGATTAAACTAATACTAATTTACTAATATATTGACAATTAATAAGTAAAAA
1 ATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA-ATTAAAAATTAATAAGTAAAAG
* * * * *
127 ATTT-AAAAATAAATATGTTTACTGAACTAGATCAAATAATCATGACTATTTGAATAATTATCTA
65 ATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTA
** * * *
191 TTTCAAATTGTTATGACCTTCTGTTTTGTCATAAAAGAATTGTTTCAGTTC
130 TTTCAAATTACTATGACCTTTTGTTTTGTCATAAAAAAATTATTTCAGTTC
* * ** * *
242 ATATAAGCTTATTCGAAATAAATTAATACTAATTTACGAATAATCTAAAAACTAATGA-TAAAAA
1 ATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATAAT-TAAAAATTAATAAGT-AAAA
* * * * * * *
306 GATTTAAAAAATGAATTTGTTTACTAAACAATTTTAAATAATTATGACTATTTGAACAATTATTT
64 GATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCT
* * * * * *
371 ATTTGAAATCACTATAACATTTTGTTTTGTCATAAAATAAAAT-TTTCTGTTC
129 ATTTCAAATTACTATGACCTTTTGTTTTGTCATAAAA-AAATTATTTCAGTTC
*
423 ATACAAGCTTATTTCG-AATAAAATAATACAAATTTATTAAT-ATTAAGACAATTAATAAGTAAA
1 ATACAAGCTTA-TTCGAAATAAAATAATACTAATTTATTAATAATTAA-A-AATTAATAAGTAAA
* * * *
486 AGATTTAAAAAATAAATTTTTTTACTGAACAAGTTCAAATCGTTATAACTATTT-AAGCAATTAT
63 AGATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAA-TAATTAT
* * * * *
550 TTATTTCAACTTGCTATGACTTTTTGTTTTGTCATAAAACAATTATTT-ATGTTC
127 CTATTTCAAATTACTATGACCTTTTGTTTTGTCATAAAAAAATTATTTCA-GTTC
* * * * *
604 ATACAAGTTTATTTGGATTAAAATAATATTAATTTATTAAT-ATT-----TTAATAAGGT-AAAG
1 ATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATAATTAAAAATTAATAA-GTAAAAG
* * ** * * * *
662 ATTTAAAAAATAAATATATTTACAAAACAAGTTCAAATAGTGATGGCCATTTAAATAATTATCTA
65 ATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTA
* * * * *
727 TTTCAAATTATTATGGCAC-TTTCTTTTGTAATAAAAAAATTATTTCAATTC
130 TTTCAAATTACTATGAC-CTTTTGTTTTGTCATAAAAAAATTATTTCAGTTC
* * * *
778 ATACAAGCTTA-TCTAAAGTAAAATAATACTAATTTATTAATATTCTGAAAATTAATAAGTAAGA
1 ATACAAGCTTATTCGAAA-TAAAATAATACTAATTTATTAATAAT-TAAAAATTAATAAGTAAAA
* * * *
842 GAATTAAAAAA-AAA-TTGTTTACCGAATAAGTTCAAATAGTTATGACTTTTTGAATAATTATCT
64 GATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCT
905 AT
129 AT
907 CACAAAACAA
Statistics
Matches: 540, Mismatches: 100, Indels: 51
0.78 0.14 0.07
Matches are distributed among these distances:
173 2 0.00
174 133 0.25
175 6 0.01
176 1 0.00
179 47 0.09
180 68 0.13
181 275 0.51
182 8 0.01
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (180 bp):
ATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATAATTAAAAATTAATAAGTAAAAGA
TTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTAT
TTCAAATTACTATGACCTTTTGTTTTGTCATAAAAAAATTATTTCAGTTC
Found at i:835 original size:355 final size:360
Alignment explanation
Indices: 80--906 Score: 888
Period size: 355 Copynumber: 2.3 Consensus size: 360
70 TTCTTTGGAT
* * * *
80 TAAACTAATACTAATTTACTAATATATTGACAATTAATAAGTAAAAAATTT-AAAAATAAATATG
1 TAAAATAATACTAATTTATTAATAT-TTGACAATTAATAAGTAAAAGATTTAAAAAATAAATTTG
* * * * * * *
144 TTTACTGAACTAGATCAAATAATCATGACTATTTGAATAATTATCTATTTCAAATTGTTATGACC
65 TTTACTGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATTGCTATGACC
* * * *
209 TTCTGTTTTGTCATAAAAGAATTGTTTCAGTTCATATAAGCTTATTCGAAATAAATTAATACTAA
130 TTCTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAA
* * * * *
274 TTTACGAATAATCTAAAAACTAATGATAAAAAGATTTAAAAAATGAATTTGTTTACTAAACAATT
195 TTTACGAATAATCTAAAAACTAATGAT-AAAAGATTTAAAAAATAAATATATTTACAAAACAAGT
* * * * * * * * *
339 TTAAATAATTATGACTATTTGAACAATTATTTATTTGAAATCACTATAACATTTTGTTTTGTCAT
259 TCAAATAATGATGACCATTTAAACAATTATCTATTTCAAATCACTATAACACTTTCTTTTGTAAT
** * *
404 AAAATAAAATTTTCTGTTCATACAAGCTTATTTCGAA
324 AAAATAAAATTTTCAATTCATACAAGCTTATCTCAAA
* * *
441 TAAAATAATACAAATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATTTT
1 TAAAATAATACTAATTTATTAATATT-TGACAATTAATAAGTAAAAGATTTAAAAAATAAATTTG
* * *
506 TTTACTGAACAAGTTCAAATCGTTATAACTATTT-AAGCAATTATTTATTTCAACTTGCTATGAC
65 TTTACTGAACAAGTTCAAATAGTTATAACTATTTGAA-CAATTATCTATTTCAAATTGCTATGAC
* * * * * * *
570 TTTTTGTTTTGTCATAAAACAATTATTT-ATGTTCATACAAGTTTATTTGGATTAAAATAATATT
129 CTTCTGTTTTGTCATAAAACAATTATTTCA-GTTCATACAAGCTTATTCGAAATAAAATAATACT
** ** *
634 AATTTATTAAT-AT-T-TTAA-TAA-GGT-AAAGATTTAAAAAATAAATATATTTACAAAACAAG
193 AATTTACGAATAATCTAAAAACTAATGATAAAAGATTTAAAAAATAAATATATTTACAAAACAAG
* * * * * **
693 TTCAAATAGTGATGGCCATTTAAATAATTATCTATTTCAAATTATTATGGCACTTTCTTTTGTAA
258 TTCAAATAATGATGACCATTTAAACAATTATCTATTTCAAATCACTATAACACTTTCTTTTGTAA
*
758 TAAAA-AAATTATTTCAATTCATACAAGCTTATCT-AAA
323 TAAAATAAAAT-TTTCAATTCATACAAGCTTATCTCAAA
* * *
795 GTAAAATAATACTAATTTATTAATATTCTGAAAATTAATAAGTAAGAGAATTAAAAAA-AAA-TT
1 -TAAAATAATACTAATTTATTAATATT-TGACAATTAATAAGTAAAAGATTTAAAAAATAAATTT
* * * * *
858 GTTTACCGAATAAGTTCAAATAGTTATGACTTTTTGAATAATTATCTAT
64 GTTTACTGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTAT
907 CACAAAACAA
Statistics
Matches: 386, Mismatches: 73, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
353 40 0.10
354 11 0.03
355 155 0.40
357 2 0.01
358 3 0.01
359 2 0.01
360 2 0.01
361 49 0.13
362 122 0.32
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (360 bp):
TAAAATAATACTAATTTATTAATATTTGACAATTAATAAGTAAAAGATTTAAAAAATAAATTTGT
TTACTGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATTGCTATGACCT
TCTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAAT
TTACGAATAATCTAAAAACTAATGATAAAAGATTTAAAAAATAAATATATTTACAAAACAAGTTC
AAATAATGATGACCATTTAAACAATTATCTATTTCAAATCACTATAACACTTTCTTTTGTAATAA
AATAAAATTTTCAATTCATACAAGCTTATCTCAAA
Found at i:1037 original size:17 final size:15
Alignment explanation
Indices: 992--1055 Score: 62
Period size: 16 Copynumber: 4.1 Consensus size: 15
982 TTAACTAATA
992 ATAATTATAATAATATT
1 ATAATTATAAT-AT-TT
1009 -TAATTA-AATATTT
1 ATAATTATAATATTT
1022 ACTAAATTATAATA-TT
1 A-T-AATTATAATATTT
1038 ATAATTATAATAATTT
1 ATAATTATAAT-ATTT
1054 AT
1 AT
1056 TATATTAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
13 2 0.05
14 11 0.27
15 6 0.15
16 18 0.44
17 4 0.10
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAATTATAATATTT
Found at i:1082 original size:21 final size:22
Alignment explanation
Indices: 1033--1083 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
1023 CTAAATTATA
**
1033 ATATTA-TAATTATAATAATTT
1 ATATTATTAATTATAATAATAC
1054 AT-TATATTAA-TATAATAATAC
1 ATAT-TATTAATTATAATAATAC
1075 ATATTATTA
1 ATATTATTA
1084 TTAATTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 4 0.16
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
ATATTATTAATTATAATAATAC
Found at i:1687 original size:17 final size:18
Alignment explanation
Indices: 1665--1698 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
1655 CTATAATAAC
1665 TATTTATTAAAA-AATTG
1 TATTTATTAAAATAATTG
1682 TATTTATTAAAATAATT
1 TATTTATTAAAATAATT
1699 TATATATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
TATTTATTAAAATAATTG
Found at i:1706 original size:17 final size:17
Alignment explanation
Indices: 1669--1706 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
1659 AATAACTATT
*
1669 TATTAAAAAATTGTATT
1 TATTAAAAAATTGTATA
1686 TATTAAAATAATT-TATA
1 TATTAAAA-AATTGTATA
1703 TATT
1 TATT
1707 TATTTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TATTAAAAAATTGTATA
Found at i:1820 original size:10 final size:9
Alignment explanation
Indices: 1799--1838 Score: 53
Period size: 10 Copynumber: 4.1 Consensus size: 9
1789 TATATACATT
1799 TAATTAATAA
1 TAATT-ATAA
1809 TATATTATAA
1 TA-ATTATAA
1819 TAATTATAA
1 TAATTATAA
1828 TAATTTATAA
1 TAA-TTATAA
1838 T
1 T
1839 TTATTAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 10 0.36
10 15 0.54
11 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
TAATTATAA
Found at i:1850 original size:19 final size:19
Alignment explanation
Indices: 1777--1852 Score: 57
Period size: 19 Copynumber: 3.7 Consensus size: 19
1767 AATATTGATA
1777 TATTAATTTAATTATATACATT
1 TATTAA-TTAATT-TATA-ATT
*
1799 TAATTAATAATATATTATAATAAT
1 T-ATTAATTA-AT-TTATAAT--T
1823 TA-TAA-TAATTTATAATT
1 TATTAATTAATTTATAATT
1840 TATTAATTAATTT
1 TATTAATTAATTT
1853 GAATATATGT
Statistics
Matches: 45, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
17 3 0.07
18 3 0.07
19 13 0.29
20 2 0.04
21 1 0.02
22 8 0.18
23 12 0.27
24 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTAATTAATTTATAATT
Found at i:2790 original size:13 final size:13
Alignment explanation
Indices: 2772--2796 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2762 ATGACTTATG
2772 ATAATATTAACAT
1 ATAATATTAACAT
2785 ATAATATTAACA
1 ATAATATTAACA
2797 CATTATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAATATTAACAT
Found at i:2820 original size:16 final size:17
Alignment explanation
Indices: 2801--2835 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
2791 TTAACACATT
2801 ATTTAATT-ATTAATAA
1 ATTTAATTAATTAATAA
2817 ATTTAATTAATTAATAA
1 ATTTAATTAATTAATAA
2834 AT
1 AT
2836 AAATCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTAATTAATTAATAA
Found at i:3364 original size:11 final size:11
Alignment explanation
Indices: 3350--3390 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
3340 ATATAAATTT
3350 AATATTTATTA
1 AATATTTATTA
3361 AATA-TTATT-
1 AATATTTATTA
3370 AATATATTA-TA
1 AATAT-TTATTA
3381 AATATTTATT
1 AATATTTATT
3391 TTAATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
9 4 0.15
10 9 0.35
11 13 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
AATATTTATTA
Found at i:3373 original size:20 final size:20
Alignment explanation
Indices: 3348--3386 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
3338 GAATATAAAT
3348 TTAATAT-TTATTAAATATTA
1 TTAATATATTA-TAAATATTA
3368 TTAATATATTATAAATATT
1 TTAATATATTATAAATATT
3387 TATTTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTAATATATTATAAATATTA
Found at i:3407 original size:36 final size:36
Alignment explanation
Indices: 3332--3408 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
3322 ATTAGTTAAT
* * *
3332 TTAATAGAATATAAATTTAATATTTATTAAATATTA
1 TTAATAGAATATAAATTTAATATTTAATAAAAATAA
* * *
3368 TTAATATATTATAAATATTTAT-TTTAATAAAAATAA
1 TTAATAGAATATAAAT-TTAATATTTAATAAAAATAA
3404 TTAAT
1 TTAAT
3409 TATAAATTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
36 30 0.88
37 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (36 bp):
TTAATAGAATATAAATTTAATATTTAATAAAAATAA
Found at i:4615 original size:181 final size:181
Alignment explanation
Indices: 4223--5501 Score: 855
Period size: 181 Copynumber: 7.1 Consensus size: 181
4213 ATTAACATAG
** * * ** * *
4223 CAAAACAAAAAATCATGAC-ATGTTGAAATAAATAATTGCTCAAATAGCCATAA-TGATTAGAAC
1 CAAAACAAAAGGTCATAACGAT-TTGAAATAGATAATTATTCAAATAGTCATAACT-ATTTGAA-
** * *
4286 TT-GTTTGGTAAATAGATTTA-TTTTTAAATCT-TTTACTTATTAATTGTCTT--AATATTAATA
63 TTGGTTTAATAAACAAATTTATTTTTTAAATCTCTTTA-TTATTAATT-T-TTGAAATATTAATA
* * ** * * * * *
4346 AATTTGTATTGTTTTA-TCCGAAATAAGCTTAGATGAACAT-AAAAAATTCTTTTATTA
125 AATTAGTATTATTTTATTTTG-AATAAGCTTATATGAA-TTGAAACAATTATTTTATGA
* * * * * * * * *
4403 CAAAACAAAAGGTTATAGCTATTTCAAATAGATAATTATTCAAACAGTCCTAATTATTTAAATTT
1 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTG
* * * * *
4468 GTTTAATAGACAAAGTCATTTTTTAAATCTCTTTATTATTAATTTTTGGATTATTAATAAATTAG
66 GTTTAATAAACAAATTTATTTTTTAAATCTCTTTATTATTAATTTTTGAAATATTAATAAATTAG
* *
4533 TATTATTTTATTTTGAATAAGCTTATATGAATTGAAACAACTCTTTTATGA
131 TATTATTTTATTTTGAATAAGCTTATATGAATTGAAACAATTATTTTATGA
* * * *
4584 CAAATCAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATTA-TTATGATTATTTG-ATC
1 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAA-TAGTCATAACTATTTGAAT-
* * ** * * * **
4647 TAGTGTGGTAAAC--A--TATTTTTAAAAAT-T-TTTACTTACTAATTGTCAAAATATTAATAAA
64 TGGTTTAATAAACAAATTTATTTTT-TAAATCTCTTTA-TTATTAATTTTTGAAATATTAATAAA
* *** * * * **
4706 TTAGTATTATTTTAATGCAAATAAGCTTGTATGAATAGGAACAATTATTTTACAA
127 TTAGTATTATTTTATTTTGAATAAGCTTATATGAATTGAAACAATTATTTTATGA
** * * ** * * *
4761 CAAAACAAAAAATCATAATGATTTGAAATAAATAATTGCTCAAATAGTCATAGCTATTTAAAATG
1 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTG
* * * * * * *
4826 GTTTAATACATAGATTTATTGTCTAAATCAC----TTATTAATTTTTGAAATATTAATAGATTAG
66 GTTTAATAAACAAATTTATTTTTTAAATCTCTTTATTATTAATTTTTGAAATATTAATAAATTAG
* * * ** * * *
4887 TATTACTTTATTCTGAATAAACTTATATGAA-CAAAACATTTGTTGTATGA
131 TATTATTTTATTTTGAATAAGCTTATATGAATTGAAACAATTATTTTATGA
* * * * * *
4937 CAAAACAAAAAGTAATAATGATTTGAAATATATAATTATTCAAATAGT-ATAATTTTTTGAA-TG
1 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTG
* * ** *
5000 GGTTAGCTAAACAGAA-TTATTTTTTAAATCTCTTCCTTATTATTTTTTGAAATATTAATAAATT
66 GTTTA-ATAAACA-AATTTATTTTTTAAATCTCTTTATTATTAATTTTTGAAATATTAATAAATT
* **
5064 CA-TTTTATTTTATTTCAAATAAGC-TAGTATGAATTGAGAA-AATTATTTTATGA
129 -AGTATTATTTTATTTTGAATAAGCTTA-TATGAATTGA-AACAATTATTTTATGA
* * * *
5117 CAAGACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCATATAGTCTTAACTATTTGAATTG
1 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTG
**** * * ** *
5182 GTTCGGCAAACAAATTTATTTTTTAAATC-CCTTAGTTATTAATTTTTGGAATATTGTTAGATTA
66 GTTTAATAAACAAATTTATTTTTTAAATCTCTTTA-TTATTAATTTTTGAAATATTAATAAATTA
* * ** * *
5246 GTATTGTTTTATTTTGAATAAGCTTGTATGAA-CAAAAGTAATTGTTTTATGA
130 GTATTATTTTATTTTGAATAAGCTTATATGAATTGAAA-CAATTATTTTATGA
* * * * * * * * * * *
5298 CATAACCAAATGTTATAATGATTTGAACTATAGAATTGTTCAAATAGTTATAACTATTTGAATTT
1 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTG
* * * *
5363 GTTTGATAAACAAATTCATTTTTTAAATCTC----TTATTAATTTTTGAAAGATTAATAAATTAT
66 GTTTAATAAACAAATTTATTTTTTAAATCTCTTTATTATTAATTTTTGAAATATTAATAAATTAG
* * * * ** * * *
5424 TATTATTTTATTTTAAATAATCATGTATG-ATAAAAAACAATTGTTATGTGA
131 TATTATTTTATTTTGAATAAGCTTATATGAAT-TGAAACAATTATTTTATGA
* *
5475 CCAAACAAAAGGTGATAACGATTTGAA
1 CAAAACAAAAGGTCATAACGATTTGAA
5502 CTAATATCTT
Statistics
Matches: 851, Mismatches: 206, Indels: 87
0.74 0.18 0.08
Matches are distributed among these distances:
174 6 0.01
175 26 0.03
176 62 0.07
177 253 0.30
178 11 0.01
179 56 0.07
180 121 0.14
181 303 0.36
182 13 0.02
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (181 bp):
CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTG
GTTTAATAAACAAATTTATTTTTTAAATCTCTTTATTATTAATTTTTGAAATATTAATAAATTAG
TATTATTTTATTTTGAATAAGCTTATATGAATTGAAACAATTATTTTATGA
Found at i:6427 original size:177 final size:180
Alignment explanation
Indices: 6100--6437 Score: 450
Period size: 177 Copynumber: 1.9 Consensus size: 180
6090 AGTTTATCCA
* *
6100 AAATAAAATAATACTACTTTAGTAATATTTCAAAAATTAATAAGTAACTAATTTAAAAGAATAAA
1 AAATAAAATAATACCAATTTAGTAATATTTCAAAAATTAATAAG-AAC-AATTTAAAAGAATAAA
* * *
6165 TGAGTTTACCTAATCAGTTCAAATAATTATAACCATTTAAACAACTATCTATTTCAAATTGTTAT
64 TCAGTTTACCTAAACAGTTCAAATAATTATAACCATTTAAACAACTATCTATTTCAAATTGTTAC
* * *
6230 TACCTTTTGTTTTGTCATAAAATAATTATTTTTCAACATACAAGCTTATTTG
129 AACCTTTTGTTCTATCATAAAATAATTATTTTTCAACATACAAGCTTATTTG
* * *
6282 AAATAAAATAATACCAATTTATTAATATTTTAAGAATTAATAAG-AC-ATTTAAAA-AATAAATC
1 AAATAAAATAATACCAATTTAGTAATATTTCAAAAATTAATAAGAACAATTTAAAAGAATAAATC
* * * * * * * *
6344 AGTTTA-TTAAACTAGTTCAAATAGTTATGACTATTTGAACAATTTTTTATTTCAAATTGTTACA
66 AGTTTACCTAAAC-AGTTCAAATAATTATAACCATTTAAACAACTATCTATTTCAAATTGTTACA
6408 ACCTTTTGTTCTATCATAAAATAATTATTT
130 ACCTTTTGTTCTATCATAAAATAATTATTT
6438 CTGTTTATAC
Statistics
Matches: 136, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
176 4 0.03
177 83 0.61
178 8 0.06
180 2 0.01
182 39 0.29
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41
Consensus pattern (180 bp):
AAATAAAATAATACCAATTTAGTAATATTTCAAAAATTAATAAGAACAATTTAAAAGAATAAATC
AGTTTACCTAAACAGTTCAAATAATTATAACCATTTAAACAACTATCTATTTCAAATTGTTACAA
CCTTTTGTTCTATCATAAAATAATTATTTTTCAACATACAAGCTTATTTG
Found at i:8056 original size:16 final size:17
Alignment explanation
Indices: 8024--8056 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8014 TGTTTAGTCA
8024 AATAATTATAACTATTTG
1 AATAATTAT-ACTATTTG
8042 AATAATTAT-CTATTT
1 AATAATTATACTATTT
8057 TAAATCGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:8555 original size:20 final size:21
Alignment explanation
Indices: 8530--8582 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
8520 ATTTAAAACA
*
8530 ATTATATTATAAATATTTA-T
1 ATTATATTATAAATATTAATT
*
8550 ATTATATTATGAATATTAATT
1 ATTATATTATAAATATTAATT
*
8571 ATTATTTTATAA
1 ATTATATTATAA
8583 TTAATATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
ATTATATTATAAATATTAATT
Found at i:9437 original size:22 final size:22
Alignment explanation
Indices: 9395--9439 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
9385 TCAATTATTG
*
9395 TTATTAATTAATATTAGTTAAT
1 TTATTAATTAACATTAGTTAAT
9417 TTATTAATTAACATTTA-TTAAT
1 TTATTAATTAACA-TTAGTTAAT
9439 T
1 T
9440 AGTAAATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
TTATTAATTAACATTAGTTAAT
Found at i:9540 original size:27 final size:30
Alignment explanation
Indices: 9483--9543 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 30
9473 ATAATAATTT
*
9483 TAATTAATATTTTATTATTAAAATATTTAAA
1 TAATTAATATTTTATTACTAAAATA-TTAAA
* *
9514 TAATTAATA-TTTA-TACTATAATATAAAA
1 TAATTAATATTTTATTACTAAAATATTAAA
9542 TA
1 TA
9544 TGAATTATGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 6 0.22
29 8 0.30
30 4 0.15
31 9 0.33
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (30 bp):
TAATTAATATTTTATTACTAAAATATTAAA
Found at i:9692 original size:17 final size:18
Alignment explanation
Indices: 9653--9694 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
9643 AAATTTAATT
*
9653 ATTATTAAAAATATTTTA
1 ATTATTAAAAATATTTAA
*
9671 A-TATTTAAAATA-TTAA
1 ATTATTAAAAATATTTAA
9687 ATTATTAA
1 ATTATTAA
9695 CTAATTGATA
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 4 0.20
17 15 0.75
18 1 0.05
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATTATTAAAAATATTTAA
Found at i:10002 original size:17 final size:17
Alignment explanation
Indices: 9973--10017 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
9963 AACTATTTGT
9973 TATTATT-AATATTAAA
1 TATTATTAAATATTAAA
*
9989 TATTATTAAATATTTAA
1 TATTATTAAATATTAAA
10006 T-TTATATAAATA
1 TATTAT-TAAATA
10018 GAATTATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 11 0.42
17 15 0.58
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTATTAAATATTAAA
Found at i:10052 original size:10 final size:10
Alignment explanation
Indices: 10021--10067 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
10011 ATAAATAGAA
10021 TTATATAAAT
1 TTATATAAAT
* *
10031 TGATTTAAAT
1 TTATATAAAT
10041 TTATATAAAT
1 TTATATAAAT
10051 TTA-ATAATAT
1 TTATATAA-AT
10061 TTATATA
1 TTATATA
10068 TTGTTTGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
9 4 0.13
10 24 0.77
11 3 0.10
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (10 bp):
TTATATAAAT
Found at i:10143 original size:23 final size:22
Alignment explanation
Indices: 10096--10152 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
10086 AATCAATAAT
10096 TATTTAATAATA-ATTAATTCAA
1 TATTTAATAATATATTAATT-AA
10118 TATTTCAATAATATATTAAATT-A
1 TATTT-AATAATATATT-AATTAA
10141 TA-TTAATAATAT
1 TATTTAATAATAT
10153 CAAATCAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 8 0.25
22 7 0.22
23 10 0.31
24 3 0.09
25 4 0.12
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (22 bp):
TATTTAATAATATATTAATTAA
Found at i:10311 original size:23 final size:25
Alignment explanation
Indices: 10285--10344 Score: 79
Period size: 23 Copynumber: 2.5 Consensus size: 25
10275 TTTAAATATT
10285 AAATTATATTTATTTCA-AATT-AA
1 AAATTATATTTATTTCATAATTCAA
* *
10308 AAATAATATTTATTTGATAATTCAA
1 AAATTATATTTATTTCATAATTCAA
*
10333 AAATTAAATTTA
1 AAATTATATTTA
10345 ATGTAAATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 15 0.48
24 4 0.13
25 12 0.39
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (25 bp):
AAATTATATTTATTTCATAATTCAA
Found at i:10618 original size:23 final size:23
Alignment explanation
Indices: 10582--10631 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
10572 CCTATTGAGA
*
10582 AAATAACTAGTTA-TAATTGTTAT
1 AAATAACTACTTATTAATT-TTAT
* *
10605 AAATAATTACTTATTGATTTTAT
1 AAATAACTACTTATTAATTTTAT
10628 AAAT
1 AAAT
10632 TAAATAGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (23 bp):
AAATAACTACTTATTAATTTTAT
Found at i:13300 original size:16 final size:15
Alignment explanation
Indices: 13242--13300 Score: 61
Period size: 14 Copynumber: 4.0 Consensus size: 15
13232 AATATATTGA
*
13242 ATATATTAAAAT-TT
1 ATATATTATAATATT
*
13256 ATATATTATAATAAT
1 ATATATTATAATATT
13271 ATATAATTAT--TATT
1 ATAT-ATTATAATATT
13285 ATATATTAGTAATATT
1 ATATATTA-TAATATT
13301 TTTATTTAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
13 4 0.11
14 19 0.51
15 5 0.14
16 9 0.24
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
ATATATTATAATATT
Found at i:13365 original size:26 final size:26
Alignment explanation
Indices: 13285--13366 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
13275 AATTATTATT
13285 ATATATTAGTAATAT-TTTTATTTAA
1 ATATATTAGTAATATATTTTATTTAA
* * *
13310 ATCTAATTA-TTAT-TATTATTA-TTATT
1 ATAT-ATTAGTAATATATT-TTATTTA-A
*
13336 ATATATTAGAAATATATTTTATTTAA
1 ATATATTAGTAATATATTTTATTTAA
13362 ATATA
1 ATATA
13367 ATTGATTTAC
Statistics
Matches: 43, Mismatches: 7, Indels: 13
0.68 0.11 0.21
Matches are distributed among these distances:
24 1 0.02
25 15 0.35
26 20 0.47
27 7 0.16
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.55
Consensus pattern (26 bp):
ATATATTAGTAATATATTTTATTTAA
Found at i:14301 original size:27 final size:27
Alignment explanation
Indices: 14271--14341 Score: 65
Period size: 28 Copynumber: 2.6 Consensus size: 27
14261 GTATATTTAA
14271 TATTTAAATATATAATAAAATGATAA-T
1 TATTTAAATATATAATAAAAT-ATAATT
* *
14298 TATTGAGAA-ATATAAATAATATATAATT
1 TATTTA-AATATAT-AATAAAATATAATT
*
14326 TATTTATATAATATAA
1 TATTTAAAT-ATATAA
14342 ATAATAGTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
27 14 0.40
28 17 0.49
29 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (27 bp):
TATTTAAATATATAATAAAATATAATT
Found at i:15525 original size:41 final size:44
Alignment explanation
Indices: 15480--15563 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 44
15470 TAAATGATTA
*
15480 TTATAT-ATATTATACTAA-AATATAATA-TATT-GTT-ATAATAT
1 TTATATAATATTA-AATAATAA-ATAATATTATTGGTTCATAATAT
15521 TTATATAATATTAAATAATAAATAATATTATTGGTTCATAATA
1 TTATATAATATTAAATAATAAATAATATTATTGGTTCATAATA
15564 ATATTTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
41 16 0.43
42 12 0.32
43 3 0.08
44 6 0.16
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (44 bp):
TTATATAATATTAAATAATAAATAATATTATTGGTTCATAATAT
Found at i:15699 original size:27 final size:29
Alignment explanation
Indices: 15669--15737 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 29
15659 ATATAACAAT
15669 TATTGTATATAAT-ATAATAATTAATAA-
1 TATTGTATATAATAATAATAATTAATAAC
* * *
15696 TATTAT-TAAAATAATAATAATTATTAATC
1 TATTGTATATAATAATAATAATTAATAA-C
*
15725 TATTGTATTTAAT
1 TATTGTATATAAT
15738 TATGTTAGTT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 5 0.16
27 18 0.56
29 5 0.16
30 4 0.12
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (29 bp):
TATTGTATATAATAATAATAATTAATAAC
Found at i:16028 original size:29 final size:28
Alignment explanation
Indices: 15986--16060 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 28
15976 AATTATATCA
* *
15986 ATATAAGTTATAAATTATTACTATTAAT
1 ATATAAATTATAAATTATAACTATTAAT
16014 ATATAAATTATTAAATTATAACTATTAAT
1 ATATAAATTA-TAAATTATAACTATTAAT
*
16043 A-AT-AGTTATAATATTATA
1 ATATAAATTATAA-ATTATA
16061 TAATTATAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 3 0.07
27 10 0.24
28 11 0.26
29 18 0.43
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (28 bp):
ATATAAATTATAAATTATAACTATTAAT
Found at i:16040 original size:35 final size:33
Alignment explanation
Indices: 15961--16134 Score: 104
Period size: 35 Copynumber: 5.3 Consensus size: 33
15951 CAAATTATTC
* *
15961 ATAATAATTAATATTAATTATATCAA-TATAAGTT
1 ATAAT-ATTAATATTAA-TATATAAATTATAAATT
*
15995 ATAAATTATTACTATTAATATATAAATTATTAAATT
1 AT-AA-TATTAATATTAATATATAAATTA-TAAATT
* *
16031 ATAACTATTAATAATAGT-TATAATATTATATAATT
1 ATAA-TATTAATATTAATATATAA-ATTATA-AATT
16066 ATAATATTAAT-TATAATAT-TACAA-TATGAAA-T
1 ATAATATTAATAT-TAATATATA-AATTAT-AAATT
*
16098 ATAATAAT-A-ATT-ATAT-TAAATT-T-AATT
1 ATAATATTAATATTAATATATAAATTATAAATT
16125 A-AATATTAAT
1 ATAATATTAAT
16135 TTTATTAATA
Statistics
Matches: 114, Mismatches: 11, Indels: 36
0.71 0.07 0.22
Matches are distributed among these distances:
26 7 0.06
27 3 0.03
28 3 0.03
29 7 0.06
30 1 0.01
31 2 0.02
32 8 0.07
33 5 0.04
34 30 0.26
35 40 0.35
36 8 0.07
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (33 bp):
ATAATATTAATATTAATATATAAATTATAAATT
Found at i:16053 original size:19 final size:17
Alignment explanation
Indices: 15980--16082 Score: 77
Period size: 18 Copynumber: 5.8 Consensus size: 17
15970 AATATTAATT
*
15980 ATATCAATATAAGTTATAA
1 ATATTAATATAA-TTAT-A
*
15999 ATTATTACTATTAATATATA
1 A-TATTAATA-TAAT-TATA
*
16019 A-ATTATTA-AATTATA
1 ATATTAATATAATTATA
*
16034 ACTATTAATAATAGTTATA
1 A-TATTAAT-ATAATTATA
16053 ATATT-ATATAATTATA
1 ATATTAATATAATTATA
16069 ATATTAATTATAAT
1 ATATTAA-TATAAT
16083 ATTACAATAT
Statistics
Matches: 69, Mismatches: 6, Indels: 19
0.73 0.06 0.20
Matches are distributed among these distances:
15 5 0.07
16 16 0.23
17 8 0.12
18 17 0.25
19 8 0.12
20 9 0.13
21 6 0.09
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.46
Consensus pattern (17 bp):
ATATTAATATAATTATA
Found at i:16062 original size:29 final size:28
Alignment explanation
Indices: 15956--16112 Score: 82
Period size: 28 Copynumber: 5.6 Consensus size: 28
15946 ATTAACAAAT
* * *
15956 TATTCATAATAATTA-ATATTA-ATTA-
1 TATTAATAATAATTATAAATTATATAAC
*
15981 TATCAAT-ATAAGTTATAAATTAT-T-AC
1 TATTAATAATAA-TTATAAATTATATAAC
16007 TATTAATATATAAATTATTAAA-T-TATAAC
1 TATTAATA-AT-AATTA-TAAATTATATAAC
* *
16036 TATTAATAATAGTTATAATATTATATAAT
1 TATTAATAATAATTATAA-ATTATATAAC
* *
16065 TA-TAATATTAATTATAATATTACAATATGAAA
1 TATTAATAATAATTATAA-ATT---ATAT-AAC
16097 TA-TAATAATAATTATA
1 TATTAATAATAATTATA
16113 TTAAATTTAA
Statistics
Matches: 105, Mismatches: 10, Indels: 27
0.74 0.07 0.19
Matches are distributed among these distances:
24 4 0.04
25 9 0.09
26 15 0.14
27 6 0.06
28 27 0.26
29 23 0.22
31 4 0.04
32 17 0.16
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (28 bp):
TATTAATAATAATTATAAATTATATAAC
Found at i:16078 original size:12 final size:12
Alignment explanation
Indices: 16007--16135 Score: 60
Period size: 11 Copynumber: 10.7 Consensus size: 12
15997 AAATTATTAC
16007 TATTAATATATAAA
1 TATTAAT-TAT-AA
16021 TTATTAAATTATAA
1 -TATT-AATTATAA
* *
16035 CTATTAATAATAG
1 -TATTAATTATAA
*
16048 T-TATAA-TATTA
1 TAT-TAATTATAA
16059 TA-TAATTATAA
1 TATTAATTATAA
16070 TATTAATTATAA
1 TATTAATTATAA
*
16082 TATTACAATATGAA
1 TATTA-ATTAT-AA
*
16096 -A-T-ATAATAA
1 TATTAATTATAA
16105 TAATTATATTA-AA
1 T-ATTA-ATTATAA
16118 T-TTAATTA-AA
1 TATTAATTATAA
16128 TATTAATT
1 TATTAATT
16136 TTATTAATAA
Statistics
Matches: 90, Mismatches: 11, Indels: 30
0.69 0.08 0.23
Matches are distributed among these distances:
9 2 0.02
10 13 0.14
11 20 0.22
12 20 0.22
13 14 0.16
14 11 0.12
15 7 0.08
16 3 0.03
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (12 bp):
TATTAATTATAA
Found at i:16146 original size:23 final size:24
Alignment explanation
Indices: 16120--16183 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 24
16110 ATATTAAATT
16120 TAATTAAATATTAATTTT-ATTAA
1 TAATTAAATATTAATTTTAATTAA
* *
16143 TAATAAAATTATATAAATTTTAATTTA
1 TAATTAAA-TAT-T-AATTTTAATTAA
*
16170 TCA-TAAATATTAAT
1 TAATTAAATATTAAT
16184 AATTACTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
23 10 0.30
24 4 0.12
25 4 0.12
26 9 0.27
27 6 0.18
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
TAATTAAATATTAATTTTAATTAA
Found at i:16177 original size:17 final size:16
Alignment explanation
Indices: 16110--16183 Score: 62
Period size: 17 Copynumber: 4.5 Consensus size: 16
16100 AATAATAATT
16110 ATATTAAATTTA-ATTAA
1 ATATT-AATTTATA-TAA
*
16127 ATATTAATTT-TATTA
1 ATATTAATTTATATAA
* *
16142 ATAATAAAATTATATAA
1 AT-ATTAATTTATATAA
*
16159 ATTTTAATTTATCATAA
1 ATATTAATTTAT-ATAA
16176 ATATTAAT
1 ATATTAAT
16184 AATTACTATT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
15 4 0.09
16 19 0.42
17 22 0.49
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATTAATTTATATAA
Found at i:16187 original size:26 final size:25
Alignment explanation
Indices: 16131--16197 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
16121 AATTAAATAT
16131 TAATTTTATTAATAATAAAATTATA
1 TAATTTTATTAATAATAAAATTATA
* *
16156 TAAATTTTAATTTATCATAAATATTA-A
1 T-AATTTT-ATTAATAATAAA-ATTATA
*
16183 TAATTACTATTAATA
1 TAATT-TTATTAATA
16198 TTCAATTCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
25 1 0.03
26 15 0.45
27 13 0.39
28 4 0.12
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (25 bp):
TAATTTTATTAATAATAAAATTATA
Found at i:16526 original size:16 final size:15
Alignment explanation
Indices: 16490--16528 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
16480 TGACATGTAT
*
16490 ATTATATTATATTTA
1 ATTATAATATATTTA
*
16505 AATATAATATATTTTA
1 ATTATAATATA-TTTA
16521 ATTATAAT
1 ATTATAAT
16529 TAAAAATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATAATATATTTA
Found at i:16551 original size:25 final size:26
Alignment explanation
Indices: 16487--16555 Score: 81
Period size: 25 Copynumber: 2.7 Consensus size: 26
16477 ATTTGACATG
* *
16487 TATATTA-TATTATATTTAAATATAA
1 TATATTATTATTATAATTAAAAATAA
16512 TATATT-TTAATTATAATTAAAAAT-A
1 TATATTATT-ATTATAATTAAAAATAA
*
16537 TATATTATTACTATAATTA
1 TATATTATTATTATAATTA
16556 TTTTAATTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
25 23 0.61
26 15 0.39
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (26 bp):
TATATTATTATTATAATTAAAAATAA
Found at i:16754 original size:18 final size:16
Alignment explanation
Indices: 16697--16774 Score: 61
Period size: 18 Copynumber: 4.6 Consensus size: 16
16687 ATTAATTATC
16697 TATTAAAT-ATAATTT
1 TATTAAATAATAATTT
*
16712 TA-TAAATTAATAATAT
1 TATTAAA-TAATAATTT
*
16728 TATACAAATAACTAATTT
1 TAT-TAAATAA-TAATTT
*
16746 ATATTAAATTATTATATTT
1 -TATTAAA-TAATA-ATTT
16765 TATTAAATAA
1 TATTAAATAA
16775 ATTATTATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 4 0.08
15 3 0.06
16 8 0.16
17 5 0.10
18 20 0.41
19 9 0.18
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
TATTAAATAATAATTT
Found at i:16773 original size:36 final size:32
Alignment explanation
Indices: 16697--16774 Score: 77
Period size: 36 Copynumber: 2.3 Consensus size: 32
16687 ATTAATTATC
16697 TATTAAAT-ATAATTTTATAAATTAATAATAT
1 TATTAAATAATAATTTTATAAATTAATAATAT
* * *
16728 TATACAAATAACTAATTTATATTAAATTATTATATTT
1 TAT-TAAATAA-TAATTT-TA-TAAATTAATA-ATAT
16765 TATTAAATAA
1 TATTAAATAA
16775 ATTATTATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
31 3 0.08
32 4 0.11
33 1 0.03
34 6 0.16
35 2 0.05
36 15 0.41
37 6 0.16
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (32 bp):
TATTAAATAATAATTTTATAAATTAATAATAT
Found at i:16778 original size:19 final size:20
Alignment explanation
Indices: 16742--16785 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 20
16732 CAAATAACTA
*
16742 ATTTATATTAAATTATTA-T
1 ATTTATATTAAATAATTATT
16761 ATTT-TATTAAATAAATTATT
1 ATTTATATTAAAT-AATTATT
16781 ATTTA
1 ATTTA
16786 ATCTTAGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTATATTAAATAATTATT
Found at i:17467 original size:19 final size:19
Alignment explanation
Indices: 17443--17493 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
17433 TAATTATTAA
17443 TTAATAA-TCATTAAATAAT
1 TTAATAATTCATTAAAT-AT
*
17462 TTAATAATTTATTAAATAT
1 TTAATAATTCATTAAATAT
*
17481 TTAA-AATTAATTA
1 TTAATAATTCATTA
17494 TTATCCAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 8 0.28
19 13 0.45
20 8 0.28
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
TTAATAATTCATTAAATAT
Found at i:17603 original size:17 final size:17
Alignment explanation
Indices: 17578--17633 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
17568 TTTAATATAT
*
17578 TTATTATAATTATAATA
1 TTATAATAATTATAATA
*
17595 TTATAATAAATA-AATGA
1 TTATAATAATTATAAT-A
*
17612 TTATTATAATTGATAA-A
1 TTATAATAATT-ATAATA
17629 TTATA
1 TTATA
17634 CTATTTGAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 3 0.10
17 25 0.81
18 1 0.03
19 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (17 bp):
TTATAATAATTATAATA
Found at i:17848 original size:24 final size:24
Alignment explanation
Indices: 17821--17918 Score: 101
Period size: 24 Copynumber: 4.0 Consensus size: 24
17811 GTAATTTTAC
*
17821 TAATATAATTATATTATAATTAAA
1 TAATATAATTATATTATAATTAAT
* *
17845 TAATATTAATCATA-TATAAATAAT
1 TAATA-TAATTATATTATAATTAAT
*
17869 TAATATAATT-TATATATTATTAAT
1 TAATATAATTATAT-TATAATTAAT
*
17893 TAATATATTATTATAGTATAATTAAT
1 TAATATA--ATTATATTATAATTAAT
17919 AGCTTATATT
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
22 2 0.03
23 4 0.07
24 33 0.55
25 7 0.12
26 12 0.20
27 2 0.03
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (24 bp):
TAATATAATTATATTATAATTAAT
Found at i:17892 original size:15 final size:15
Alignment explanation
Indices: 17874--17905 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
17864 ATAATTAATA
*
17874 TAATTTATATATTAT
1 TAATTAATATATTAT
17889 TAATTAATATATTAT
1 TAATTAATATATTAT
17904 TA
1 TA
17906 TAGTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TAATTAATATATTAT
Found at i:18195 original size:14 final size:14
Alignment explanation
Indices: 18152--18199 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 14
18142 TTTACTAATA
*
18152 ATAAATTATTAATTT
1 ATAAA-TATTAAATT
18167 ATAATATATAATAAATT
1 ATAA-ATAT--TAAATT
18184 ATAAATATTAAATT
1 ATAAATATTAAATT
18198 AT
1 AT
18200 TAATTACTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 8 0.28
15 7 0.24
16 5 0.17
17 9 0.31
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
ATAAATATTAAATT
Found at i:18817 original size:13 final size:14
Alignment explanation
Indices: 18799--19030 Score: 53
Period size: 16 Copynumber: 16.1 Consensus size: 14
18789 ATAAATAAAC
18799 TAATTATT-TATAA
1 TAATTATTATATAA
18812 TAATTATTATATAA
1 TAATTATTATATAA
* *
18826 T-ATAATAATATTAA
1 TAATTATTATA-TAA
* *
18840 -ATATTAATTAAATTA
1 TA-ATT-ATTATATAA
*
18855 -AATTATTA-AT-T
1 TAATTATTATATAA
*
18866 TAAATATTATA-AA
1 TAATTATTATATAA
18879 T-ATTATT-TATAA
1 TAATTATTATATAA
*
18891 T-ATTGATTTTATAAA
1 TAATT-ATTATAT-AA
* *
18906 TAATGAGTAATATAA
1 TAATTA-TTATATAA
*
18921 -AATTTTAATTATTTAA
1 TAA--TT-ATTATATAA
18937 -AATTATTA-ATAA
1 TAATTATTATATAA
18949 T-ATTAGTATATTACTAA
1 TAATTA-T-TA-TA-TAA
*
18966 TAATTAATTATTATATT
1 TAATT-ATTA-TATA-A
18983 TAATTATTGATATATTA
1 TAATTATT-ATATA--A
19000 TTAATT-TTATAATAA
1 -TAATTATTAT-ATAA
*
19015 TATTTTATTATATAA
1 TA-ATTATTATATAA
19030 T
1 T
19031 GAAATAGCTA
Statistics
Matches: 167, Mismatches: 20, Indels: 62
0.67 0.08 0.25
Matches are distributed among these distances:
11 2 0.01
12 27 0.16
13 29 0.17
14 23 0.14
15 19 0.11
16 35 0.21
17 22 0.13
18 9 0.05
19 1 0.01
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.50
Consensus pattern (14 bp):
TAATTATTATATAA
Found at i:18863 original size:17 final size:17
Alignment explanation
Indices: 18835--18870 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 17
18825 ATATAATAAT
18835 ATTAAATATTAA-TTAA
1 ATTAAATATTAATTTAA
18851 ATTAAATTATTAATTTAA
1 ATTAAA-TATTAATTTAA
18869 AT
1 AT
18871 ATTATAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 6 0.33
18 6 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTAAATATTAATTTAA
Found at i:18892 original size:21 final size:21
Alignment explanation
Indices: 18801--18894 Score: 60
Period size: 20 Copynumber: 4.7 Consensus size: 21
18791 AAATAAACTA
*
18801 ATTATTTATAATAATTAT-TAT
1 ATTATTTATAAT-ATTATAAAT
* *
18822 A-TA-ATATAATAATATTAAAT
1 ATTATTTATAATATTA-TAAAT
* *
18842 ATTA-AT-TAA-ATTA-AATT
1 ATTATTTATAATATTATAAAT
18859 ATTAATTTA-AATATTATAAAT
1 ATT-ATTTATAATATTATAAAT
18880 ATTATTTATAATATT
1 ATTATTTATAATATT
18895 GATTTTATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 18
0.70 0.09 0.22
Matches are distributed among these distances:
17 6 0.11
18 4 0.07
19 13 0.23
20 17 0.30
21 17 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATTTATAATATTATAAAT
Found at i:18977 original size:17 final size:16
Alignment explanation
Indices: 18937--19030 Score: 63
Period size: 17 Copynumber: 5.8 Consensus size: 16
18927 AATTATTTAA
18937 AATTATTAATAATATT
1 AATTATTAATAATATT
* *
18953 AGTATATTACTAATAATT
1 AAT-TATTAATAAT-ATT
18971 AATTATT-AT-AT-TT
1 AATTATTAATAATATT
*
18984 AATTATTGATATATTATT
1 AATTATT-A-ATAATATT
*
19002 AATTTTATAATAATATT
1 AATTAT-TAATAATATT
19019 --TTATTATATAAT
1 AATTATTA-ATAAT
19031 GAAATAGCTA
Statistics
Matches: 61, Mismatches: 8, Indels: 19
0.69 0.09 0.22
Matches are distributed among these distances:
13 9 0.15
14 2 0.03
15 10 0.16
16 5 0.08
17 21 0.34
18 13 0.21
19 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (16 bp):
AATTATTAATAATATT
Found at i:19000 original size:58 final size:56
Alignment explanation
Indices: 18799--19004 Score: 154
Period size: 58 Copynumber: 3.6 Consensus size: 56
18789 ATAAATAAAC
* * * *
18799 TAATTATT-TATAATAATTATTATATAATA-TAATAATATTAAATATTAATTA-AAT
1 TAATTATTATAT-TTAATTATTATATATTATTAATAATATTATATATTAATAATAAT
* * * * * *
18853 TAAATTATTA-ATTTAAATATTATAAATATTATTTATAATATTGATTTTATAAATAATGAG
1 T-AATTATTATATTTAATTATTAT--ATATTATTAATAATATT-A-TATATTAATAATAAT
* * * *
18913 TAA-TATAAAATTTTAATTATT-TAAAATTATTAATAATATTAGTATATTACTAATAAT
1 TAATTATTATA-TTTAATTATTAT-ATATTATTAATAATATTA-TATATTAATAATAAT
18970 TAATTATTATATTTAATTATTGATATATTATTAAT
1 TAATTATTATATTTAATTATT-ATATATTATTAAT
19005 TTTATAATAA
Statistics
Matches: 116, Mismatches: 23, Indels: 22
0.72 0.14 0.14
Matches are distributed among these distances:
54 10 0.09
55 9 0.08
56 5 0.04
57 33 0.28
58 36 0.31
59 12 0.10
60 11 0.09
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (56 bp):
TAATTATTATATTTAATTATTATATATTATTAATAATATTATATATTAATAATAAT
Found at i:19030 original size:121 final size:114
Alignment explanation
Indices: 18812--19032 Score: 259
Period size: 121 Copynumber: 1.9 Consensus size: 114
18802 TTATTTATAA
* *
18812 TAATTATTATATAATATAATAATATTAAATATTAATTAAATTAAATTATTAATTTAAATATTATA
1 TAATTATTATAAAATATAATAATATTAAATATTAATAAAATTAAATTATTAATTTAAATATTATA
*
18877 AATATTATTTATAATATTGATTTTATAAATAATGAGTAATATAAAATTT
66 AATATTATTTATAATAATGATTTTATAAATAATGAGTAATATAAAATTT
* * *
18926 TAATTATT-TAAAATTATTAATAATATTAGTATATTACTAATAATT-AATTATTATATTTAATTA
1 TAATTATTATAAAA-TA-TAATAATATTA-AATATTAATAA-AATTAAATTATTA-ATTTAAATA
* *
18989 TTGATATATTATTAATTTTATAATAAT-ATTTTATTATATAATGA
61 TT-ATA-AATATT-A-TTTATAATAATGATTTTA-TAAATAATGA
19033 AATAGCTAAT
Statistics
Matches: 89, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
113 4 0.04
114 10 0.11
115 11 0.12
116 16 0.18
117 14 0.16
118 3 0.03
119 5 0.06
120 7 0.08
121 19 0.21
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (114 bp):
TAATTATTATAAAATATAATAATATTAAATATTAATAAAATTAAATTATTAATTTAAATATTATA
AATATTATTTATAATAATGATTTTATAAATAATGAGTAATATAAAATTT
Found at i:19447 original size:16 final size:16
Alignment explanation
Indices: 19428--19491 Score: 78
Period size: 16 Copynumber: 4.0 Consensus size: 16
19418 TGGAAATTTA
*
19428 TATATTATTAACTATT
1 TATATTATTAAATATT
19444 TATATTATTAAATA-T
1 TATATTATTAAATATT
*
19459 TATATTAATAACATATT
1 TATATTATTAA-ATATT
19476 TAATATT-TTAAATATT
1 T-ATATTATTAAATATT
19492 AAAATAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
15 11 0.26
16 21 0.50
17 5 0.12
18 5 0.12
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TATATTATTAAATATT
Found at i:19487 original size:32 final size:31
Alignment explanation
Indices: 19428--19492 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 31
19418 TGGAAATTTA
*
19428 TATATTATTAACTATTTATATTATTAAATAT
1 TATATTAATAACTATTTATATTATTAAATAT
19459 TATATTAATAACATATTTAATATT-TTAAATAT
1 TATATTAATAAC-TATTT-ATATTATTAAATAT
19491 TA
1 TA
19493 AAATAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
31 11 0.35
32 15 0.48
33 5 0.16
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (31 bp):
TATATTAATAACTATTTATATTATTAAATAT
Found at i:21554 original size:17 final size:17
Alignment explanation
Indices: 21514--21564 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
21504 ATATTCATAG
21514 TAATTATAATTATTAAT-
1 TAATTATAATTA-TAATA
*
21531 TACTTATAATTATAATA
1 TAATTATAATTATAATA
21548 TAATTAT-ATTAATAATA
1 TAATTATAATT-ATAATA
21565 ATATTATTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 7 0.23
17 23 0.77
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATTATAATTATAATA
Found at i:21562 original size:23 final size:23
Alignment explanation
Indices: 21514--21618 Score: 69
Period size: 23 Copynumber: 4.6 Consensus size: 23
21504 ATATTCATAG
*
21514 TAATTATAATTATTAATTACTTA
1 TAATTATAATTATTAATTAATTA
21537 TAATTATAA-TA-TAATTATATTAA
1 TAATTATAATTATTAATTA-ATT-A
*
21560 TAATAAT-ATTATTAGA-TAATTA
1 TAATTATAATTATTA-ATTAATTA
* * *
21582 -AATTGTTATATTAATAATTAATTTT
1 TAATT-ATA-ATTATTAATTAA-TTA
21607 TAATT-TAATTAT
1 TAATTATAATTAT
21619 ACACCTTAGT
Statistics
Matches: 64, Mismatches: 7, Indels: 22
0.69 0.08 0.24
Matches are distributed among these distances:
21 9 0.14
22 7 0.11
23 26 0.41
24 15 0.23
25 3 0.05
26 4 0.06
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (23 bp):
TAATTATAATTATTAATTAATTA
Found at i:21648 original size:17 final size:17
Alignment explanation
Indices: 21514--21649 Score: 51
Period size: 17 Copynumber: 8.2 Consensus size: 17
21504 ATATTCATAG
21514 TAATTATAATTATTAA-T
1 TAATTAT-ATTATTAATT
* *
21531 TACTTATAATTA-TAATA
1 TAATTAT-ATTATTAATT
*
21548 TAATTATATTAATAA--
1 TAATTATATTATTAATT
*
21563 TAA-TATTATTAGATAATT
1 TAATTA-TATTA-TTAATT
* *
21581 AAATTGT-TATATTAA--
1 TAATTATAT-TATTAATT
*
21596 TAATTA-ATTTTTAATT
1 TAATTATATTATTAATT
* *
21612 TAATTATA-CACCTT-AGT
1 TAATTATATTA--TTAATT
21629 TAATTATATTATTAATT
1 TAATTATATTATTAATT
21646 TAAT
1 TAAT
21650 AATAAATTAA
Statistics
Matches: 89, Mismatches: 14, Indels: 32
0.66 0.10 0.24
Matches are distributed among these distances:
14 7 0.08
15 13 0.15
16 19 0.21
17 41 0.46
18 8 0.09
19 1 0.01
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (17 bp):
TAATTATATTATTAATT
Found at i:21894 original size:22 final size:20
Alignment explanation
Indices: 21868--21910 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
21858 ATTTAACTTC
*
21868 ATTAATTCAATGATATATTATA
1 ATTAATT-AAT-ATAAATTATA
21890 ATTAATTAATATAAATTATA
1 ATTAATTAATATAAATTATA
21910 A
1 A
21911 AAATTGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTAATTAATATAAATTATA
Found at i:22370 original size:24 final size:24
Alignment explanation
Indices: 22343--22389 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
22333 ATTATATTTA
22343 TAATTAAAATTAAATTAAAAAATT
1 TAATTAAAATTAAATTAAAAAATT
* ** *
22367 TAATTTATGTTAAATTAATAAAT
1 TAATTAAAATTAAATTAAAAAAT
22390 AATATATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
TAATTAAAATTAAATTAAAAAATT
Found at i:22405 original size:33 final size:37
Alignment explanation
Indices: 22366--22443 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
22356 ATTAAAAAAT
22366 TTAATTTAT-G-TTAAA-TTAATAAATAATAT-ATTA
1 TTAATTTATAGATTAAATTTAATAAATAATATAATTA
* *
22399 TTAATTTATAGTATTAAATTTAATAAATTATTTAATTA
1 TTAATTTATAG-ATTAAATTTAATAAATAATATAATTA
22437 TT-ATTTA
1 TTAATTTA
22444 ATATATAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
33 9 0.24
34 1 0.03
36 5 0.13
37 17 0.45
38 6 0.16
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (37 bp):
TTAATTTATAGATTAAATTTAATAAATAATATAATTA
Found at i:22453 original size:30 final size:32
Alignment explanation
Indices: 22380--22460 Score: 91
Period size: 30 Copynumber: 2.7 Consensus size: 32
22370 TTTATGTTAA
*
22380 ATTAATAAATAATATATTA-TTAATTTATAGT
1 ATTAATATATAATATATTATTTAATTTATAGT
* *
22411 ATTAA-ATTTAATAAATTATTTAA-TTAT--T
1 ATTAATATATAATATATTATTTAATTTATAGT
22439 ATTTAATATATAATATATTATT
1 A-TTAATATATAATATATTATT
22461 ATTATTCATA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
28 2 0.05
29 4 0.10
30 27 0.64
31 9 0.21
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (32 bp):
ATTAATATATAATATATTATTTAATTTATAGT
Found at i:23036 original size:21 final size:21
Alignment explanation
Indices: 23012--23058 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
23002 AACTTATTTG
23012 TTATTATTAATAATTTAATAA
1 TTATTATTAATAATTTAATAA
* * * *
23033 TTATTTTTAGTTATTTGATAA
1 TTATTATTAATAATTTAATAA
23054 TTATT
1 TTATT
23059 CAAATATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTAATAATTTAATAA
Found at i:23341 original size:20 final size:20
Alignment explanation
Indices: 23316--23395 Score: 74
Period size: 20 Copynumber: 4.0 Consensus size: 20
23306 AATTATTAAT
* *
23316 ATTATAATTTATATTATTAC
1 ATTATAATTAATATAATTAC
* *
23336 ATTATAATAAATATAATTAT
1 ATTATAATTAATATAATTAC
*
23356 ATTATAATTAATTATAA-TAT
1 ATTATAATTAA-TATAATTAC
23376 ATT-TAATATAAATATAATTA
1 ATTATAAT-T-AATATAATTA
23396 ATATTAATAT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
19 4 0.08
20 38 0.75
21 9 0.18
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTATAATTAATATAATTAC
Found at i:23356 original size:15 final size:15
Alignment explanation
Indices: 23306--23439 Score: 86
Period size: 15 Copynumber: 8.9 Consensus size: 15
23296 TTATATATCA
*
23306 AATTATTAATATTA-T
1 AATTA-TAATATAATT
*
23321 AATT-T-ATATTATT
1 AATTATAATATAATT
23334 ACATTATAATA-AATAT
1 A-ATTATAATATAAT-T
*
23350 AATTATATTATAATT
1 AATTATAATATAATT
*
23365 AATTATAATATATTT
1 AATTATAATATAATT
23380 AA-TATAAATATAATT
1 AATTAT-AATATAATT
23395 AA-TATTAATATTTAATT
1 AATTA-TAATA--TAATT
* *
23412 ATTTATTAAT-TAAAT
1 AATTA-TAATATAATT
23427 AA-TATAATATAAT
1 AATTATAATATAAT
23440 ATAAATATTG
Statistics
Matches: 98, Mismatches: 9, Indels: 25
0.74 0.07 0.19
Matches are distributed among these distances:
12 6 0.06
13 7 0.07
14 11 0.11
15 52 0.53
16 9 0.09
17 6 0.06
18 7 0.07
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (15 bp):
AATTATAATATAATT
Found at i:23415 original size:36 final size:39
Alignment explanation
Indices: 23339--23441 Score: 101
Period size: 36 Copynumber: 2.7 Consensus size: 39
23329 TTATTACATT
23339 ATAATAAATATAATT-ATATTATAATTAATTATAATATATTTA
1 ATAATAAATATAATTAATA-T-TAA-T-ATTATAATATATTTA
23381 AT-ATAAATATAATTAATATTAATATT-TAAT-TATTTA
1 ATAATAAATATAATTAATATTAATATTATAATATATTTA
* *
23417 TTAATTAA-ATAATATAATA-TAATAT
1 ATAATAAATATAAT-TAATATTAATAT
23442 AAATATTGTT
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
36 18 0.32
37 13 0.23
38 3 0.05
39 1 0.02
40 3 0.05
41 13 0.23
42 5 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (39 bp):
ATAATAAATATAATTAATATTAATATTATAATATATTTA
Found at i:23463 original size:57 final size:56
Alignment explanation
Indices: 23339--23488 Score: 146
Period size: 57 Copynumber: 2.6 Consensus size: 56
23329 TTATTACATT
* * *
23339 ATAATAAATATAATTATATTA-TAATTAATTATAATATATTTAATATAAATATAATTA
1 ATAATATATTTAATTAT-TTATTAATTAA-TATAATATATATAATATAAATATAATTA
* **
23396 ATATTAATATTTAATTATTTATTAATTAA-ATAATATAATATAATATAAATATTGTTA
1 ATAAT-ATATTTAATTATTTATTAATTAATATAATAT-ATATAATATAAATATAATTA
23453 GATAATATATTTTAA-TA-TTACTTAATTATATATAAT
1 -ATAATATA-TTTAATTATTTA-TTAATTA-ATATAAT
23489 CTAAATTAGA
Statistics
Matches: 78, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
56 10 0.13
57 36 0.46
58 27 0.35
59 5 0.06
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (56 bp):
ATAATATATTTAATTATTTATTAATTAATATAATATATATAATATAAATATAATTA
Found at i:24080 original size:21 final size:22
Alignment explanation
Indices: 24055--24097 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
24045 TTATTTATTT
24055 TAACA-TAATTTTATAA-AAATA
1 TAACAGTAATTTT-TAATAAATA
*
24076 TAACAGTTATTTTTAATAAATA
1 TAACAGTAATTTTTAATAAATA
24098 ATTATAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (22 bp):
TAACAGTAATTTTTAATAAATA
Found at i:24350 original size:23 final size:23
Alignment explanation
Indices: 24324--24367 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
24314 AATATGTTTA
*
24324 TTAG-TTTAAATCTAATTATATGG
1 TTAGTTTTAAATATAA-TATATGG
24347 TTAGTTTTAAATATAATATAT
1 TTAGTTTTAAATATAATATAT
24368 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (23 bp):
TTAGTTTTAAATATAATATATGG
Found at i:24925 original size:28 final size:28
Alignment explanation
Indices: 24873--24943 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
24863 TTTAATATTT
*
24873 AAATATATAATAAAATGATAATTATTGAG
1 AAATATA-AATAATATGATAATTATTGAG
* *
24902 AAATATAAATAATAT-ATAATTTATTTAT
1 AAATATAAATAATATGATAA-TTATTGAG
*
24930 ATATATAAATAATA
1 AAATATAAATAATA
24944 GTACTTAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 4 0.11
28 26 0.70
29 7 0.19
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.39
Consensus pattern (28 bp):
AAATATAAATAATATGATAATTATTGAG
Found at i:26259 original size:23 final size:21
Alignment explanation
Indices: 26233--26279 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
26223 TATATCTATT
26233 TTATTGCTAATAAAATATAACAA
1 TTATTG-T-ATAAAATATAACAA
* *
26256 TTATTGTATATAATATAATAA
1 TTATTGTATAAAATATAACAA
26277 TTA
1 TTA
26280 ATAATATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 15 0.68
22 1 0.05
23 6 0.27
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (21 bp):
TTATTGTATAAAATATAACAA
Found at i:26369 original size:22 final size:21
Alignment explanation
Indices: 26319--26372 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
26309 ATTATCTATT
*
26319 TATTTA-ATTATGTTAGTTTA
1 TATTTATATTATGTTAATTTA
* *
26339 TAATATATATTATTTTAATTTA
1 T-ATTTATATTATGTTAATTTA
26361 CTATTTATATTA
1 -TATTTATATTA
26373 ATAATTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 1 0.04
21 4 0.15
22 21 0.78
23 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (21 bp):
TATTTATATTATGTTAATTTA
Found at i:26422 original size:18 final size:17
Alignment explanation
Indices: 26392--26465 Score: 75
Period size: 18 Copynumber: 4.4 Consensus size: 17
26382 AATATTATAA
*
26392 GTATATTAATAATTAAT
1 GTATAATAATAATTAAT
26409 G--T-ATAATAATTAAT
1 GTATAATAATAATTAAT
26423 GTAT-ATATATATATTAAT
1 GTATAATA-ATA-ATTAAT
*
26441 GTATATATTATAATTAAT
1 GTATA-ATAATAATTAAT
26459 GTATAAT
1 GTATAAT
26466 GTATAAAGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
14 12 0.24
15 1 0.02
16 4 0.08
17 6 0.12
18 21 0.43
19 3 0.06
20 2 0.04
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.47
Consensus pattern (17 bp):
GTATAATAATAATTAAT
Found at i:26470 original size:18 final size:17
Alignment explanation
Indices: 26400--26471 Score: 80
Period size: 18 Copynumber: 4.2 Consensus size: 17
26390 AAGTATATTA
26400 ATAATTAATGTAT-A--
1 ATAATTAATGTATAATT
26414 ATAATTAATGTAT-ATAT
1 ATAATTAATGTATAAT-T
26431 ATATATTAATGTATATATT
1 ATA-ATTAATGTATA-ATT
26450 ATAATTAATGTATAATGT
1 ATAATTAATGTATAAT-T
26468 ATAA
1 ATAA
26472 AGTAAACAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
14 14 0.27
17 5 0.10
18 26 0.51
19 4 0.08
20 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.46
Consensus pattern (17 bp):
ATAATTAATGTATAATT
Found at i:26621 original size:29 final size:28
Alignment explanation
Indices: 26579--26636 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 28
26569 AATTATATCA
* *
26579 ATATAAGTTATAAATTATTACTATTAAT
1 ATATAAATTATAAATTATAACTATTAAT
26607 ATATAAATTATTAAATTATAACTATTAAT
1 ATATAAATTA-TAAATTATAACTATTAAT
26636 A
1 A
26637 ATAGTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (28 bp):
ATATAAATTATAAATTATAACTATTAAT
Found at i:26633 original size:35 final size:35
Alignment explanation
Indices: 26560--26636 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
26550 ATTCGTAATA
* * *
26560 ATTAATATTAATTATATCAATATAAGTTATAAATT
1 ATTAATATTAATTATATAAATATAAATTATAAACT
*
26595 ATTACTATTAA-TATATAAATTATTAAATTAT-AACT
1 ATTAATATTAATTATATAAA-TA-TAAATTATAAACT
26630 ATTAATA
1 ATTAATA
26637 ATAGTATAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
34 7 0.20
35 21 0.60
36 7 0.20
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (35 bp):
ATTAATATTAATTATATAAATATAAATTATAAACT
Found at i:26679 original size:31 final size:32
Alignment explanation
Indices: 26634--26699 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
26624 ATAACTATTA
* *
26634 ATAATAGTATAATAT-ATAATAT-ATATTAATT
1 ATAATAGTACAATATGA-AATATAATAATAATT
*
26665 ATAATATTACAATATGAAATATAATAATAATT
1 ATAATAGTACAATATGAAATATAATAATAATT
26697 ATA
1 ATA
26700 TTAAATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 18 0.60
32 12 0.40
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.41
Consensus pattern (32 bp):
ATAATAGTACAATATGAAATATAATAATAATT
Found at i:26738 original size:23 final size:23
Alignment explanation
Indices: 26711--26770 Score: 59
Period size: 26 Copynumber: 2.5 Consensus size: 23
26701 TAAATTTAAT
26711 TAAATATTAATTTT-ATTAATAA
1 TAAATATTAATTTTAATTAATAA
* *
26733 TAAAATTATATAAATTTTAATTTATCA
1 T-AAA-TAT-T-AATTTTAATTAATAA
26760 TAAATATTAAT
1 TAAATATTAAT
26771 AATTACTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
22 1 0.03
23 6 0.19
24 4 0.13
25 4 0.13
26 9 0.29
27 7 0.23
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAATATTAATTTTAATTAATAA
Found at i:26764 original size:17 final size:16
Alignment explanation
Indices: 26697--26770 Score: 62
Period size: 17 Copynumber: 4.5 Consensus size: 16
26687 AATAATAATT
26697 ATATTAAATTTA-ATTAA
1 ATATT-AATTTATA-TAA
*
26714 ATATTAATTT-TATTA
1 ATATTAATTTATATAA
* *
26729 ATAATAAAATTATATAA
1 AT-ATTAATTTATATAA
*
26746 ATTTTAATTTATCATAA
1 ATATTAATTTAT-ATAA
26763 ATATTAAT
1 ATATTAAT
26771 AATTACTATT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
15 4 0.09
16 19 0.42
17 22 0.49
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATTAATTTATATAA
Found at i:26774 original size:26 final size:25
Alignment explanation
Indices: 26718--26784 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
26708 AATTAAATAT
26718 TAATTTTATTAATAATAAAATTATA
1 TAATTTTATTAATAATAAAATTATA
* *
26743 TAAATTTTAATTTATCATAAATATTA-A
1 T-AATTTT-ATTAATAATAAA-ATTATA
*
26770 TAATTACTATTAATA
1 TAATT-TTATTAATA
26785 TTCAATTCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
25 1 0.03
26 15 0.45
27 13 0.39
28 4 0.12
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (25 bp):
TAATTTTATTAATAATAAAATTATA
Found at i:27323 original size:10 final size:12
Alignment explanation
Indices: 27273--27319 Score: 58
Period size: 13 Copynumber: 3.8 Consensus size: 12
27263 CACTTTATAA
27273 ATAATAAATATT
1 ATAATAAATATT
**
27285 AGTTTTAAATATT
1 A-TAATAAATATT
27298 ATAATAAATATTT
1 ATAATAAATA-TT
27311 ATAATAAAT
1 ATAATAAAT
27320 TATATACAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 8 0.28
13 21 0.72
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (12 bp):
ATAATAAATATT
Found at i:28034 original size:27 final size:27
Alignment explanation
Indices: 28004--28055 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
27994 TTGATAATAT
*
28004 ATTTAATTATTATAAAATTATTAATTA
1 ATTTAATTATAATAAAATTATTAATTA
* *
28031 ATTTAATTGTAATAAATTTATTAAT
1 ATTTAATTATAATAAAATTATTAAT
28056 AAGTAGATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (27 bp):
ATTTAATTATAATAAAATTATTAATTA
Found at i:28474 original size:23 final size:22
Alignment explanation
Indices: 28424--28466 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
28414 GTAGTAATGC
28424 TAATTTATTAATATTATAAAAAT
1 TAATTTATTAATA-TATAAAAAT
28447 TAATTTATATAATA-ATAAAA
1 TAATTTAT-TAATATATAAAA
28467 GTATAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 8 0.42
24 5 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TAATTTATTAATATATAAAAAT
Found at i:28522 original size:16 final size:16
Alignment explanation
Indices: 28506--28549 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
28496 AATATTCATT
28506 ATTAACTATATAAATTA
1 ATTAA-TATATAAATTA
*
28523 ATTAATATATAAAAATA
1 ATTAATATAT-AAATTA
28540 ATTTAATATA
1 A-TTAATATA
28550 ATATAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 5 0.21
17 11 0.46
18 8 0.33
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
ATTAATATATAAATTA
Found at i:28538 original size:18 final size:18
Alignment explanation
Indices: 28507--28564 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
28497 ATATTCATTA
*
28507 TTAACTATAT-AAATTAA-
1 TTAA-TATATAAAAATAAT
28524 TTAATATATAAAAATAAT
1 TTAATATATAAAAATAAT
*
28542 TTAATATAATATAAAT-AT
1 TTAATAT-ATAAAAATAAT
28560 TTAAT
1 TTAAT
28565 TGAGAAGGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
16 5 0.14
17 10 0.28
18 14 0.39
19 7 0.19
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
TTAATATATAAAAATAAT
Found at i:28775 original size:17 final size:15
Alignment explanation
Indices: 28753--28803 Score: 50
Period size: 17 Copynumber: 3.2 Consensus size: 15
28743 ATAATTATAT
28753 TAATATTTATTTAATTA
1 TAATA-TTA-TTAATTA
*
28770 TAATATTA-TAATAA
1 TAATATTATTAATTA
28784 TAATAATTAATTAATTA
1 TAAT-ATT-ATTAATTA
28801 TAA
1 TAA
28804 GTATACTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 9 0.31
15 3 0.10
16 4 0.14
17 13 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TAATATTATTAATTA
Found at i:28886 original size:27 final size:27
Alignment explanation
Indices: 28819--28897 Score: 74
Period size: 27 Copynumber: 2.9 Consensus size: 27
28809 CTTATAATAA
* *
28819 TAATATAAAAATATTAAT-ATTAGTTTAT
1 TAATATATAAA-ATTAATAATTA-TTTAG
*
28847 TAATATATTAAATTAATAATTATTTAG
1 TAATATATAAAATTAATAATTATTTAG
28874 TAACTA-ATAAAATT-ATAACTTATT
1 TAA-TATATAAAATTAATAA-TTATT
28898 ATAATTATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
26 4 0.09
27 25 0.57
28 15 0.34
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (27 bp):
TAATATATAAAATTAATAATTATTTAG
Found at i:28970 original size:17 final size:17
Alignment explanation
Indices: 28950--29002 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
28940 AATATTGTAA
*
28950 TATTATATAAATTAAAT
1 TATTATATAAATTATAT
*
28967 TATT-TATACATTATAT
1 TATTATATAAATTATAT
* *
28983 TAGTATAAAAATTATAT
1 TATTATATAAATTATAT
29000 TAT
1 TAT
29003 ACAAATAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
16 13 0.45
17 16 0.55
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
TATTATATAAATTATAT
Found at i:29350 original size:15 final size:16
Alignment explanation
Indices: 29322--29353 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
29312 TATTATAAGC
29322 AATTATTATAATAATT
1 AATTATTATAATAATT
29338 AATTATT-TAATAATT
1 AATTATTATAATAATT
29353 A
1 A
29354 TTTTAAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTATTATAATAATT
Found at i:29909 original size:16 final size:15
Alignment explanation
Indices: 29884--29930 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
29874 TGGTCATAGA
*
29884 AAATTAATAATAAAAT
1 AAATTTATAAT-AAAT
*
29900 AAATTTATAATCAAT
1 AAATTTATAATAAAT
29915 AAATTTATAATCAAAT
1 AAATTTATAAT-AAAT
29931 TATACCTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (15 bp):
AAATTTATAATAAAT
Found at i:29917 original size:15 final size:15
Alignment explanation
Indices: 29897--29928 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
29887 TTAATAATAA
29897 AATAAATTTATAATC
1 AATAAATTTATAATC
29912 AATAAATTTATAATC
1 AATAAATTTATAATC
29927 AA
1 AA
29929 ATTATACCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (15 bp):
AATAAATTTATAATC
Found at i:30001 original size:11 final size:11
Alignment explanation
Indices: 29985--30025 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
29975 TTAACTTTAA
*
29985 ATATTATAATT
1 ATATTATTATT
29996 ATATTATTATT
1 ATATTATTATT
*
30007 -TATTTTTATT
1 ATATTATTATT
30017 A-ATTATTAT
1 ATATTATTAT
30026 ATAGTTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
ATATTATTATT
Found at i:30093 original size:26 final size:27
Alignment explanation
Indices: 30030--30098 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
30020 TATTATATAG
*
30030 TTATAATATTAAATATGTTAATAACAA
1 TTATAGTATTAAATATGTTAATAACAA
30057 TTATAGTATTAAATAT-TTAAT---AA
1 TTATAGTATTAAATATGTTAATAACAA
*
30080 TTATA-TATTAATTATGTTA
1 TTATAGTATTAAATATGTTA
30099 GCTCAAAGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
22 9 0.23
23 10 0.26
26 5 0.13
27 15 0.38
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.48
Consensus pattern (27 bp):
TTATAGTATTAAATATGTTAATAACAA
Found at i:37786 original size:14 final size:14
Alignment explanation
Indices: 37751--37803 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
37741 ATCTCATTTA
37751 ATTATATATAAT-AT
1 ATTAT-TATAATAAT
*
37765 AGTATTATAATAAT
1 ATTATTATAATAAT
37779 ATTATTATACA-AAT
1 ATTATTATA-ATAAT
37793 ATTATT-TAATA
1 ATTATTATAATA
37804 TTTATATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
12 1 0.03
13 9 0.26
14 23 0.68
15 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (14 bp):
ATTATTATAATAAT
Found at i:37896 original size:16 final size:16
Alignment explanation
Indices: 37873--37924 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
37863 AGATTATAAA
37873 AATATTTATAATAATT
1 AATATTTATAATAATT
*
37889 ACTATTTATAAT-ATT
1 AATATTTATAATAATT
37904 AAT-TATTATAATAATAT
1 AATAT-TTATAATAAT-T
37921 AATA
1 AATA
37925 ATAGTATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
14 1 0.03
15 12 0.40
16 13 0.43
17 4 0.13
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
AATATTTATAATAATT
Found at i:39292 original size:18 final size:19
Alignment explanation
Indices: 39264--39313 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
39254 ATATATTGTT
*
39264 ATAATATATAAATAATT-A
1 ATAATAAATAAATAATTAA
*
39282 ATAATTAATAAAT-ATTAA
1 ATAATAAATAAATAATTAA
*
39300 ATAGTAAATAAATA
1 ATAATAAATAAATA
39314 TATATTAGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAATAAATAAATAATTAA
Found at i:39318 original size:22 final size:23
Alignment explanation
Indices: 39282--39344 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 23
39272 TAAATAATTA
* *
39282 ATAATTAATAAATATTAAATAGT
1 ATAATAAATATATATTAAATAGT
* *
39305 A-AATAAATATATATTAGA-GGT
1 ATAATAAATATATATTAAATAGT
39326 ATAATAAAT-TAT-TTAAATA
1 ATAATAAATATATATTAAATA
39345 TTTTAGTTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
20 4 0.12
21 6 0.19
22 21 0.66
23 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (23 bp):
ATAATAAATATATATTAAATAGT
Found at i:39626 original size:27 final size:25
Alignment explanation
Indices: 39595--39643 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
39585 ATGATTATAT
*
39595 TATAATAA-TATAT-TAATTCAAATA
1 TATAATAACTATATATTATT-AAATA
39619 TATAATAACTATATATTATTAAATA
1 TATAATAACTATATATTATTAAATA
39644 ATTTGATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 8 0.36
25 10 0.45
26 4 0.18
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
TATAATAACTATATATTATTAAATA
Found at i:40575 original size:15 final size:16
Alignment explanation
Indices: 40546--40589 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
40536 TTTTTATTTA
40546 ATAATTATATATTAAAT
1 ATAA-TATATATTAAAT
*
40563 ATAATATAT-TTAATT
1 ATAATATATATTAAAT
40578 ATAATATTATAT
1 ATAATA-TATAT
40590 AGTTATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 11 0.46
16 8 0.33
17 5 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATAATATATATTAAAT
Found at i:40691 original size:53 final size:52
Alignment explanation
Indices: 40539--40697 Score: 135
Period size: 53 Copynumber: 2.9 Consensus size: 52
40529 TATATAATTT
*
40539 TTATTTAATAATT-ATATATTA-AATATAATATATTTAATTATAATATTATATAG
1 TTATTTAAT-ATTAATA-ATTATAATATAATA-ATATAATTATAATATTATATAG
* * * * *
40592 TTATTAAAAAATTAATAATTATGACTATTTATAATAATAGTTATTATATTCTTATATTAG
1 TTATT-TAATATTAATAATTAT-A--A--TATAATAATA-TAATTATAATATTATA-TAG
40652 CTTATTTAATATTAATAATTATAATATAATAA-ATAATTATAATATT
1 -TTATTTAATATTAATAATTATAATATAATAATATAATTATAATATT
40698 TAATTAATTA
Statistics
Matches: 84, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
53 22 0.26
54 6 0.07
55 9 0.11
57 2 0.02
58 2 0.02
59 21 0.25
60 17 0.20
61 5 0.06
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.49
Consensus pattern (52 bp):
TTATTTAATATTAATAATTATAATATAATAATATAATTATAATATTATATAG
Found at i:40903 original size:18 final size:19
Alignment explanation
Indices: 40877--40927 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
40867 TTTGTTACTG
*
40877 TAAATTTATATAAAT-TAT
1 TAAAATTATATAAATATAT
*
40895 TAAAATTAT-TAATTATAT
1 TAAAATTATATAAATATAT
*
40913 TAATATTA-ATAAATA
1 TAAAATTATATAAATA
40928 GCATAATTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TAAAATTATATAAATATAT
Found at i:43876 original size:30 final size:28
Alignment explanation
Indices: 43801--43876 Score: 66
Period size: 30 Copynumber: 2.6 Consensus size: 28
43791 AGTTATTAAT
* *
43801 TATTTTAA-TAATTTATAATACTAATAA
1 TATTATAATTAATTAATAATACTAATAA
43828 TATTATAATT-ATCCTAATAATTACTAATAA
1 TATTATAATTAAT--TAATAA-TACTAATAA
**
43858 TGATTATCTTTAATTAATA
1 T-ATTATAATTAATTAATA
43877 TTATATAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
27 9 0.23
28 1 0.03
29 5 0.13
30 15 0.38
31 7 0.18
32 2 0.05
ACGTcount: A:0.45, C:0.07, G:0.01, T:0.47
Consensus pattern (28 bp):
TATTATAATTAATTAATAATACTAATAA
Found at i:43937 original size:30 final size:31
Alignment explanation
Indices: 43875--43943 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
43865 CTTTAATTAA
**
43875 TATTATATAATAGAATTTAATATAAATAATT
1 TATTATATAATAGAACATAATATAAATAATT
*
43906 TATTA-ATAATAGAAACATAATTTAAAT-ATT
1 TATTATATAATAG-AACATAATATAAATAATT
43936 TATTATAT
1 TATTATAT
43944 TTATCATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 15 0.45
31 18 0.55
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (31 bp):
TATTATATAATAGAACATAATATAAATAATT
Found at i:44198 original size:16 final size:18
Alignment explanation
Indices: 44166--44202 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
44156 AAATATTTTA
44166 AAATATTTAGCTAATATT
1 AAATATTTAGCTAATATT
44184 AAATA-TTAG-TAATATT
1 AAATATTTAGCTAATATT
44200 AAA
1 AAA
44203 CAATATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.53
17 4 0.21
18 5 0.26
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (18 bp):
AAATATTTAGCTAATATT
Found at i:44297 original size:14 final size:14
Alignment explanation
Indices: 44298--44380 Score: 57
Period size: 14 Copynumber: 5.9 Consensus size: 14
44288 ATATTTATTA
*
44298 ATTTATTAATTAAC
1 ATTTATTAATTAAT
*
44312 ATTTATTAATTAGT
1 ATTTATTAATTAAT
*
44326 A--AATTAA-TAAT
1 ATTTATTAATTAAT
*
44337 ATATAATTAATTAAT
1 AT-TTATTAATTAAT
44352 ATTTAATTTAATATAAT
1 ATTT-A-TTAAT-TAAT
*
44369 AATT-TTAATTAA
1 ATTTATTAATTAA
44381 ACAGAATAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
11 4 0.07
12 5 0.09
13 3 0.05
14 25 0.45
15 7 0.12
16 5 0.09
17 7 0.12
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (14 bp):
ATTTATTAATTAAT
Found at i:44306 original size:22 final size:22
Alignment explanation
Indices: 44278--44322 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
44268 TTAATTATTG
*
44278 TTATTAATTAATATTTATTAAT
1 TTATTAATTAACATTTATTAAT
44300 TTATTAATTAACATTTATTAAT
1 TTATTAATTAACATTTATTAAT
44322 T
1 T
44323 AGTAAATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TTATTAATTAACATTTATTAAT
Found at i:44330 original size:22 final size:22
Alignment explanation
Indices: 44278--44332 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
44268 TTAATTATTG
* *
44278 TTATTAATTAATATTTATTAAT
1 TTATAAATTAACATTTATTAAT
*
44300 TTATTAATTAACATTTATTAA-
1 TTATAAATTAACATTTATTAAT
44321 TTAGTAAATTAA
1 TTA-TAAATTAA
44333 TAATATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 3 0.10
22 27 0.90
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
TTATAAATTAACATTTATTAAT
Found at i:44350 original size:18 final size:16
Alignment explanation
Indices: 44280--44380 Score: 59
Period size: 15 Copynumber: 6.3 Consensus size: 16
44270 AATTATTGTT
44280 ATTAATTAAT-ATTT-
1 ATTAATTAATAATTTA
* *
44294 ATTAATTTATTAATTAA
1 ATTAA-TTAATAATTTA
* * * *
44311 CATTTATTAATTAGTAA
1 -ATTAATTAATAATTTA
*
44328 ATTAA-TAAT-ATATA
1 ATTAATTAATAATTTA
44342 ATTAATTAAT-ATTTA
1 ATTAATTAATAATTTA
44357 ATTTAATATAATAATTTTA
1 A-TTAAT-TAATAA-TTTA
44376 ATTAA
1 ATTAA
44381 ACAGAATAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
14 12 0.18
15 17 0.25
16 12 0.18
17 12 0.18
18 9 0.13
19 5 0.07
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (16 bp):
ATTAATTAATAATTTA
Found at i:44772 original size:16 final size:15
Alignment explanation
Indices: 44748--44782 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
44738 TTAATAATTT
*
44748 TATAGTAATTAAATAG
1 TATAATAATTAAAT-G
44764 TATAATAATTAAATG
1 TATAATAATTAAATG
44779 TATA
1 TATA
44783 TGTGAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (15 bp):
TATAATAATTAAATG
Found at i:44772 original size:27 final size:27
Alignment explanation
Indices: 44711--44773 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
44701 ATTGTATATT
* *
44711 TTAATAAATTTATTGCAATTAAATTAG
1 TTAATAATTTTATAGCAATTAAATTAG
*
44738 TTAATAATTTTATAGTAATTAAA-TAG
1 TTAATAATTTTATAGCAATTAAATTAG
44764 TATAATAATT
1 T-TAATAATT
44774 AAATGTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (27 bp):
TTAATAATTTTATAGCAATTAAATTAG
Found at i:44946 original size:14 final size:14
Alignment explanation
Indices: 44929--44972 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
44919 ATAAAAAAAA
44929 TTAAATATTTTAAT
1 TTAAATATTTTAAT
*
44943 TTAAATATTTAAAAT
1 TTAAATATTT-TAAT
44958 TTAAA-ATTTTTAAT
1 TTAAATA-TTTTAAT
44972 T
1 T
44973 ATTACATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAAATATTTTAAT
Found at i:45434 original size:22 final size:22
Alignment explanation
Indices: 45402--45444 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
45392 TATAAACAAT
*
45402 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
45424 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
45445 TAACTAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:45546 original size:16 final size:16
Alignment explanation
Indices: 45518--45563 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
45508 CTTAATAATT
45518 TTAA-AAATTATTTAG
1 TTAATAAATTATTTAG
*
45533 TTAATAAATAATTTAG
1 TTAATAAATTATTTAG
45549 -TAATTAAATTATTTA
1 TTAA-TAAATTATTTA
45564 AAATTATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 7 0.26
16 20 0.74
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (16 bp):
TTAATAAATTATTTAG
Found at i:46640 original size:18 final size:19
Alignment explanation
Indices: 46606--46641 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
46596 TAATAGTCAT
46606 ATATTAGTTAATATTTATA
1 ATATTAGTTAATATTTATA
*
46625 ATATTA-TTACTATTTAT
1 ATATTAGTTAATATTTAT
46642 TATAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (19 bp):
ATATTAGTTAATATTTATA
Found at i:46704 original size:13 final size:13
Alignment explanation
Indices: 46685--46717 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
46675 TTATATTAAT
46685 TATTATAATATGTA
1 TATTATAAT-TGTA
46699 -ATTATAATTGTA
1 TATTATAATTGTA
46711 TATTATA
1 TATTATA
46718 TATTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (13 bp):
TATTATAATTGTA
Found at i:46714 original size:47 final size:44
Alignment explanation
Indices: 46674--46766 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 44
46664 TATTTTATGA
*
46674 ATTATAT-TAATTATTATAATATGTAATTATAATTGTATATTATAT
1 ATTATATATAATTATT-TAATATATAATT-TAATTGTATATTATAT
* * *
46719 ATTATATAATAATTATTTATTATATAATTTAATTGGACA-TATAT
1 ATTATAT-ATAATTATTTAATATATAATTTAATTGTATATTATAT
46763 ATTA
1 ATTA
46767 ATAATTAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
44 9 0.21
45 15 0.36
46 10 0.24
47 8 0.19
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (44 bp):
ATTATATATAATTATTTAATATATAATTTAATTGTATATTATAT
Found at i:46720 original size:25 final size:25
Alignment explanation
Indices: 46685--46744 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
46675 TTATATTAAT
* *
46685 TATTATAATATGTA-ATTATAATTGTA
1 TATTAT-ATAT-TATATAATAATTATA
*
46711 TATTATATATTATATAATAATTATT
1 TATTATATATTATATAATAATTATA
46736 TATTATATA
1 TATTATATA
46745 ATTTAATTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.07
25 22 0.73
26 6 0.20
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (25 bp):
TATTATATATTATATAATAATTATA
Found at i:46739 original size:18 final size:18
Alignment explanation
Indices: 46712--46746 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
46702 ATAATTGTAT
46712 ATTATATATTATATAATA
1 ATTATATATTATATAATA
*
46730 ATTATTTATTATATAAT
1 ATTATATATTATATAAT
46747 TTAATTGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATATATTATATAATA
Found at i:47051 original size:13 final size:13
Alignment explanation
Indices: 47033--47057 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47023 ATTCTTTATT
47033 AATAATTAGATTA
1 AATAATTAGATTA
47046 AATAATTAGATT
1 AATAATTAGATT
47058 TATTTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Done.