Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168328.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23166
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Found at i:3655 original size:901 final size:886
Alignment explanation
Indices: 1570--4188 Score: 3850
Period size: 883 Copynumber: 3.0 Consensus size: 886
1560 GTAACCTTCA
** * * *
1570 GTCTGGTCTGATCTTAGACTGAAAATGAACTCCGTATGGCTAAGCCAACTGACGAAACGAGCGGG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
*
1635 CGGGCGGGCACTACGCCGACCAGAGAGGCAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
1700 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
131 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
1765 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAAGAT
196 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGAA
** * * *
1830 TTTTGAAACTTTTTACAATTCGAGATTTTTTTGAAATTTCTTCAGAAGGAGTTTTGTCCCCAAAC
261 TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAAC
* * * *
1895 TTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTTAGCTAAAAACTCCAAGT
326 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
1960 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGCA
391 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
2025 GCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
456 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
*
2090 GGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCTCACCCCCCGCCCC
521 GGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CCCC
** * * * *
2155 CCAATCACCGGAACCACTATGCCGTCGGTCAGGTTCTCC-GA-----C-GATGGTGCCCCAAGCG
585 CCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGATGCTCCGGATGGTGCCCCAGGCA
*
2213 AAAAAAATACGGCACCAGCACATGCCCGAGCTGAGCATGTGCACCCGCAACCCTCGGTCCGGTCC
650 AAAAAAATACGGCACCAGCACATGCCC-AGC--AGCATGTG-ACCC-CAACCCTCGGT-C-GTTC
*
2278 GATTTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
708 -ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
2343 CCAATGAAATGAGCGTGTGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCC-AGGGATCG
772 CCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGA-GGATCG
* * * *
2407 ACCGGGTCCCCCCTGCGTCCTGCCGATCTTGCTGCATCAACCCTCGGTCTG
836 ATCGGGTCCCCCCTGCATCCTGCCAATCTTACTGCATCAACCCTCGGTCTG
* *
2458 GTC----C-AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGA
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * *
2518 CGGGCGGGCACTACGTCAGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
2583 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
131 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
2648 AATGGTCCCTTAAGCCTTAATGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATG-A
196 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGAA
* *
2712 TTTTCAAAACTTTTTATGGTTC-AGAATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAA
261 TTTT-GAAACTTTTTACGGTTCGAG-ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAA
* * * * * * *
2776 ACCTGGTAGACATGATCCTTGTATTTTTCTTCGTATGCGCAAAAAAATTCAGCCAAAAACTCGAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* **
2841 GTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACCGCTACTGG
389 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
2906 CAGCAAACCTGTAAATTCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* * *
2971 TAAGGGGCGAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCACCC
519 TAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCC
* * *
3036 CCCCAATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCAGTGATGCTCCGGTGATGGTGCCT
583 CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-G-GATGCTCC-G-GATGGTGCCC
*
3101 CAGGCAAAAAAAAAAAGCGGCACCAGCACATGCCCAAGCCCAGCATGTGTACCCACAACCCTCGG
644 CAGGC-AAAAAAAATA-CGGCACCAGCACATGCCC-AG--CAGCATGTG-ACCC-CAACCCTCGG
* *
3166 TCTAGTTCAATCTTACACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCTGTATGCC
702 TC--GTTC-ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
3231 TAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGAATGCGCAAGCCG
764 TAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
* * *
3296 AGGATCGGTCAGGTCCCCCCTGCATGCTGCCAATCTTACTGTCA-CAACCCTCGGTCTG
829 AGGATCGATCGGGTCCCCCCTGCATCCTGCCAATCTTACTG-CATCAACCCTCGGTCTG
*
3354 GTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGAGCGGG
1 GTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * *
3419 CGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCATGGATCGACAGGGTGGTAGGT
66 CGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
3484 GGGTTTAGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
131 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
3549 AATGGTCCCTTAAGCCTTCATGTAAACTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGAA
196 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGAA
*
3614 TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC---AGGAGTTTTGGCCCCAAAC
261 TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAAC
* *
3676 TTGGTAGACGTGATCGTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGT
326 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
3741 GTACAGGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
391 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
3806 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
456 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
*
3871 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCC
521 GGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCC
3936 CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCAG
586 CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-G-GATGCTCC-G-GATGGTGCCCCAG
4001 GCGAAAAAAAATACGGCACCAGCACATGCCC-G-A--A---G--CCCAA-CCT-GG--G-T-ATC
647 GC-AAAAAAAATACGGCACCAGCACATGCCCAGCAGCATGTGACCCCAACCCTCGGTCGTTCATC
* *
4051 TTACACTAGGAATGAACTCCGTATGCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
711 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* *
4116 TGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATAG-GCAAGCCGGGGATCGATCG
776 TGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT-GCGCAAGCCGAGGATCGATCG
4180 GGTCCCCCC
840 GGTCCCCCC
4189 CTGAGTCACA
Statistics
Matches: 1563, Mismatches: 139, Indels: 73
0.88 0.08 0.04
Matches are distributed among these distances:
873 129 0.08
874 1 0.00
875 1 0.00
876 1 0.00
880 2 0.00
881 3 0.00
882 9 0.01
883 553 0.35
884 2 0.00
886 3 0.00
888 3 0.00
889 1 0.00
891 2 0.00
894 14 0.01
895 9 0.01
896 225 0.14
897 78 0.05
898 254 0.16
900 1 0.00
901 265 0.17
902 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (886 bp):
GTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
CGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGAA
TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
GGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCC
CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGATGCTCCGGATGGTGCCCCAGGCAA
AAAAAATACGGCACCAGCACATGCCCAGCAGCATGTGACCCCAACCCTCGGTCGTTCATCTTACA
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
TGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGATCGGGTCCC
CCCTGCATCCTGCCAATCTTACTGCATCAACCCTCGGTCTG
Found at i:8574 original size:454 final size:453
Alignment explanation
Indices: 7721--8639 Score: 1462
Period size: 454 Copynumber: 2.0 Consensus size: 453
7711 AATGCAAGTA
* *
7721 CATGATCCAAGAGAAAGAGATGACTGCAGTGGTGCACTGCTTGCGCACTTGGCACCATTACCTGT
1 CATGATTCAAGAGAAAGAGATGACTGCAGCGGTGCACTGCTTGCGCACTTGGCACCATTACCTGT
*
7786 TGGGGTCGAGGTTCATGGTGAGGACGAACAATGTGGCGACCAGCTACTTCCAGACGCAGAAGAAG
66 TAGGGTCGAGGTTCATGGTGAGGACGAACAATGTGGCGACCAGCTACTTCCAGACGCAGAAGAAG
* * *
7851 CTATCCCCAAGCAGGCGAGATGGCAAGATTTTCTTGCAAAATTTGATTTCCAGATGGAGTACAAG
131 CTAGCCCCAAGCAAGCGAGATGGCAAGATTTTCTTACAAAATTTGATTTCCAGATGGAGTACAAG
* * * *
7916 CCAGGACGGGCAAACCTAGTGGCAGATGCCCTGAGTAGGAAGGCTAACCTTGCTGCCATTAGCCA
196 CCAGGACGGACAAACCTAGTGGCACATGCCCTGAGCAAGAAGGCTAACCTTGCTGCCATTAGCCA
* *
7981 ACCAGAGGGGTCACTGGTGCCACATATCAAGGAGGGACTTACGCATGATCCTACAGCCAAGGCTT
261 ACCAAAGGGGTCACTGGTGCCACACATCAAGGAGGGACTTACGCATGATCCTACAGCCAAGGCTT
*
8046 TGATGGAGTACGCCTAGCAAGGTAAGACTAGGCAGTTTTGGTTGCAAGATGGTTTGTTGTACACC
326 TGATGGAGTACGCCCAGCAAGGTAAGACTAGGCAGTTTTGGTTGCAAGATGGTTTGTTGTACACC
* * *
8111 AGGGGCAGTAGACTGTTTGTGTCGCAGCACGAGAAGCTCCACAAGGAAGTTTTGCAAGAATGT
391 AGGGGCAGTAGACTATTTGTGCCACAGCACGAGAAGCTCCACAAGGAAGTTTTGCAAGAATGT
* * **
8174 CATGATTCAAGAGAAGGAGATGACTGCAGCGGTGCACTGCTTGTGCACTTGGTGCCATTACCTGT
1 CATGATTCAAGAGAAAGAGATGACTGCAGCGGTGCACTGCTTGCGCACTTGGCACCATTACCTGT
* * * * *
8239 TAGGGTCGAGGTTCGTGGTGAGGATGGACAATGTGGTGACCAGCTACTTCCAGACGTAGAAGAAG
66 TAGGGTCGAGGTTCATGGTGAGGACGAACAATGTGGCGACCAGCTACTTCCAGACGCAGAAGAAG
** *
8304 CT-GCCCTTCAAGCAAGCGAGATGGTTAGATTTTCTTACAGAATTTGATTTCCAGATGGAGTACA
131 CTAGCCC--CAAGCAAGCGAGATGGCAAGATTTTCTTACAAAATTTGATTTCCAGATGGAGTACA
* *
8368 AGCCAGGATGGACGAACCTAGTGGCACATGCCCTGAGCAAGAAGGCTAACCTTGCTGCCATTAGC
194 AGCCAGGACGGACAAACCTAGTGGCACATGCCCTGAGCAAGAAGGCTAACCTTGCTGCCATTAGC
* * * *
8433 CAACCAAAGGGGTCACTGGTGTCGCGCATCAAGGAGGGACTTGCGCATGATCCTACAGCCAAGGC
259 CAACCAAAGGGGTCACTGGTGCCACACATCAAGGAGGGACTTACGCATGATCCTACAGCCAAGGC
* * *
8498 TTTGATGGAGTATGCCCAGTAAGGTAAGACTAGGCAGTTTTGGTTGCAGGATGGTTTGTTGTACA
324 TTTGATGGAGTACGCCCAGCAAGGTAAGACTAGGCAGTTTTGGTTGCAAGATGGTTTGTTGTACA
* *
8563 CCAGGGGCAGTAGACTATTTGTGCCACAGCACGGGAAGCTCCGCAAGGAAGTTTTGCAAGAATGT
389 CCAGGGGCAGTAGACTATTTGTGCCACAGCACGAGAAGCTCCACAAGGAAGTTTTGCAAGAATGT
8628 CATGATTCAAGA
1 CATGATTCAAGA
8640 TGGGTTGGAC
Statistics
Matches: 425, Mismatches: 39, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
452 3 0.01
453 120 0.28
454 302 0.71
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (453 bp):
CATGATTCAAGAGAAAGAGATGACTGCAGCGGTGCACTGCTTGCGCACTTGGCACCATTACCTGT
TAGGGTCGAGGTTCATGGTGAGGACGAACAATGTGGCGACCAGCTACTTCCAGACGCAGAAGAAG
CTAGCCCCAAGCAAGCGAGATGGCAAGATTTTCTTACAAAATTTGATTTCCAGATGGAGTACAAG
CCAGGACGGACAAACCTAGTGGCACATGCCCTGAGCAAGAAGGCTAACCTTGCTGCCATTAGCCA
ACCAAAGGGGTCACTGGTGCCACACATCAAGGAGGGACTTACGCATGATCCTACAGCCAAGGCTT
TGATGGAGTACGCCCAGCAAGGTAAGACTAGGCAGTTTTGGTTGCAAGATGGTTTGTTGTACACC
AGGGGCAGTAGACTATTTGTGCCACAGCACGAGAAGCTCCACAAGGAAGTTTTGCAAGAATGT
Found at i:16076 original size:869 final size:869
Alignment explanation
Indices: 10570--16655 Score: 7432
Period size: 869 Copynumber: 6.9 Consensus size: 869
10560 TTTAGTTTAT
** * * *
10570 TCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAAAGAGCGGGTGGGTG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * * * *
10635 GGCACTATGTC-GACCAGAGAGGCGGGATGCGTAAACCGTGCATCGATAGGATGGTAGGTTGGTT
66 GGCACTACG-CAGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
10699 TAGGCACATCTTCATATTGT-TGCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TAGGCACATCTTCATATT-TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
10763 GTCCTTTAAGCCTTCTTGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCAT-GATTTT
194 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-TCGATTTT
* *
10827 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGGCCCAAACTTG
258 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * *
10892 GTAGACGTGATCCTTGTATTTTTTTTGGGATGCAAAAAAAAAATTTAGCTAAAAACTCGAAGTGT
323 GTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGT
10957 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
387 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
11022 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAG
452 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
*
11087 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCACCCCGCCCCC
517 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGCCCCC
** * *
11152 CTAATCGCCAAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA-----T-G-G-TG-CCCCAGG
581 C-AATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGTCCCCCGG
** * * * * ***
11208 -CGAAAAAAAAATGTGGCACTACCACATGCCCGAGCCCAGCATGTGCAACTACAACCCTCGGTCT
645 AC-AAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGTAA-CC-C--TC-
* * *
11272 GGTCTGATCTTACACTAGGAATGAAATTCGTATGCTTAGACTGGGAATAAACTCCGTATACCTAA
704 GGTCTGA---T---C------------TCG-AT-CTTACACTGGGAATGAACTCCGTATGCCTAA
* * * * *
11337 GTCAACACATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAAGGATGCGCAAGCCGAGG
749 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCCCAAGTCGGGG
** **
11402 ATCGA-CTGGGTCCCCCCTACATGCTGCCGATCTTGCTACCGTAACCCTTGGTCTGA
814 ATCGATC-GGGTCCCCCCTACATGCTGCCGATCTTGCTACCACAACCCTCAGTCTGA
** * *
11458 TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * * *
11523 GGCACTATGCCGGCCAAAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCAGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
11588 AGGCACATCTGCATATTTTTGCTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* **
11653 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCAT-GATTTTCC
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-TCGATTTTTG
* * * *
11717 AAACTTTTTACGGTTCGAGATTTTTTTAAAGTTTTTTCAAAAGGAGTTTTGGTCCTAAACTTGGT
260 AAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
11782 AGACGTGATCCTTGTATTTTTGTTGGGATGCACAAAACAAGTT-AGCTAAAAACTCGAAGTGTAC
325 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTAC
11846 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
389 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
** *
11911 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
*
11976 GCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-CCCCCAA
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAA
* * * * * **
12040 TCGCCAGAACCCTAATGCCTCCGGTCAGGTTCTCCGACGATGCTCTGACGATGGT-GCCCTAAGC
584 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGAT-GTCCCCCGGA-C
** * *
12104 AAAAAAAAATGTGGCACCAGCACATGCTTGAGCCCAGCATGTGCACCTGTAACCCTCGGTCCGGT
647 AAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGTAACCCTCGGT-C--T
* * *
12169 CCGATCTTACTCTAGGAATGAAATCCATATGCTTAGACTAGGAATGAACTCCGTATCCCTAAGTC
709 --GA---T-CTC-------G--------AT-CTTACACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** *
12234 AACCCACGAAATGAGCGTGCGGGCGCTCATCCGGCCAGAGGGGCAGGATGCCCAAGTCGTTGATT
752 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCCCAAGTCGGGGATC
* * * * * * *
12299 GATCGGGTCCCCCCTACGTGCTACTGATATTGCTGCCACAACCCTCAGTCCGG
817 GATCGGGTCCCCCCTACATGCTGCCGATCTTGCTACCACAACCCTCAGTCTGA
* *
12352 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACGAAACGAGCGGGCAGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * *
12417 GGCACTACGCCGACCAGAAAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCAGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
12482 AGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
12547 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG-TTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTCGATTTTTGA
*
12611 AACTTTTTACGGTTCG-GATTTTTTTTAAATTTTTTCA-AAGGAGTTTTGGCCCCAAACTTGGTA
261 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
12674 GACATGATCCTTGTA-TTTTGTTGGCATGCAC-AAAAAATT-AGCTAAAAACTCGAAGTGTACAG
326 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
** *
12736 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACAGCTACTAGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
12801 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* *
12866 CAATATAAGGGCCAAGTATCAGCACCCATCGTACATCATGTGCGCACACCCCCTAC-CCCCCCAA
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC--CGCCCCCCAA
** * * * * * *
12930 TCGCCAAAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGCTGCCTCTGG-C
584 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATG-T-CCCCCGGAC
* * * * * * * *
12994 GAAAAAAAATTCGGCACCAGCACATGGTCGAGCCTAGCATGTGCACCAGCAACCCACAGTCTGAT
647 AAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGAT
* * * * * *
13059 -TCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACAGGCG
712 CTCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
* * ** * ** * *
13123 CTCAGCCAGCTAGAGGGGCAGGATGAGCAAGTCGGGGAACTCTCGGGTCCCCCCATCCATGCTGG
777 CTCAGCCGGCCAGAGGGGCAGGATGCCCAAGTCGGGGATCGATCGGGTCCCCCC-TACATGCTGC
* * * * *
13188 CAATCCTGCTGCTACAACCCTCGGTCTGA
841 CGATCTTGCTACCACAACCCTCAGTCTGA
* * * * * * *
13217 TGTAATCTTAGACTAGGAATGAGCTCCGTATGCCTAAGCCAACCGAAGAAA-TAGGCGGGCGGGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-GCGGGCGGGC
* * * *
13281 GGGCATTACATCAG-CCAGAGAGACGGAATGCGCAAGCCAAGTGGCATCGATA-GGTGGTATGGT
65 GGGCACTAC-GCAGACCAGAGAGGCGGGATGCGCAAGCC--GTGG-ATCGATAGGGTGGTA-GGT
13344 GGGTTTAGGCA-ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
125 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
13408 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGCTTTCTATTTTTCACGAT
190 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTCGAT
* *
13473 TTTTGAAACTTTTTACGGTTCGGGATTTTCTTAAAATTTTTTTCAGAA-GAGTTTTGGCCCCAAA
255 TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * *
13537 CTTGGTAGACATGATCCTT-TTTTTTTTGTTGGCATGTACAAAAAAAATTCATCTAAAAA-TCGA
319 CTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGA
**
13600 AGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTTCAGAC-CTTTAATGGCTACT
382 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACT
* *
13664 GGCAGCAAACCTGTAAAATCTCCAAATGCTCTTTAAGGGGGAGTGAGTTCTCAAGGTTTGATGAT
446 GGCAGCAAACCTGTAAAATCT-CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
13729 GGATAGGGGGCCCAATATAGACGGGCC-AGTACCAGCACCCATCGCACGATCATGTGCGCACAGC
510 GGATAGGGGG-CCAATATA-A-GGGCCAAGTACCAGCACCCATCGCAC-ATCATGTGCGCACACC
* * * * * * *
13793 CCCCGCCCCCCAATCACCGAAACGCTAATGCCGCCGATCATGTTCTTCC-AGCGATGCTCCGGCG
571 CCCCGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC-TCCGA-CGATGCTCTGGCG
* *
13857 ATGGTGCCCCCGG-GAGAAAAAAAT-CGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCAC-
634 AT-GT-CCCCCGGACAAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACC-CG
* * *
13919 CAAACCTCGGTCCAGTCCGATCTTGCACTGGAATGAAACTTTCGTACGCTAGACAGGGAATGAAC
696 TAACCCTCGGT-C--T--GATC-T---C--G-AT----C--T--TA--C---ACTGGGAATGAAC
* * * ** *
13984 T-CGTATG-C-AAGTCAACCCACGGAACGAGCGTGCGGGCACTCAGTTTGGCCAGAGGGG-TGGA
736 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CCGGCCAGAGGGGCAGGA
* * * * * * *
14045 TGCGCAAAGCCGAGGA-AGTATC--GTCCCCCCTGCATG-T-CCAATCTTGCTACCATAACCCTC
800 TGC-CCAAGTCGGGGATCG-ATCGGGTCCCCCCTACATGCTGCCGATCTTGCTACCACAACCCTC
* *
14105 -GATTTGG
863 AG-TCTGA
*
14112 TCTGATCTTAGACTGGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
1 TCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * *
14177 AGGCACTACGCCAG-TCAGAGAGGCTGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGAT
65 GGGCACTACG-CAGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * ** *
14241 TTAGGCACATCTTCATATTTCTACCATCCCAACACCATTTTTATGGCTTTTAAATTCATACAATG
129 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
14306 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAT-GATTTT
194 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-TCGATTTT
* *
14370 TGAAACTTTTTACGGTTCGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
258 TGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * * *
14435 GTAGACGTGATCCTAGTATTTTTTTTGGCTTGCACAAAATAATTCAACTAAAAACTCGAAGTGTA
323 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
** *
14500 TTGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
388 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
14565 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTC-AGGTTTGATGAGGGATAGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCAAGGTTTGATGAGGGATAGG
* *
14629 GGTG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCACCCCC
517 GG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCC
** * * * * * *
14693 CAATCGTTGGAACCCCAATGCCGCCGGTCAGATTCTCTGACGATGGTCCGACGATGGTGCCCCAG
581 CAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGAT-GT-CCCCCG
* * * * * *
14758 GA-GAAAAAAAATATGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCATAACCCTCAGTCT
644 GACAAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCT
* *
14822 GGTCT-GATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGG
709 GATCTCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
* * *
14886 GTGCTCA-CCGGCCAGAGGGGCAGGATGCCCAAG-CTGGGTATCGA-CTGGGTCCCCCCTGCATG
774 GCGCTCAGCCGGCCAGAGGGGCAGGATGCCCAAGTC-GGGGATCGATC-GGGTCCCCCCTACATG
* *
14948 CTGCCGATCCTGCT-GCAGCAACCCTCAGTCTGA
837 CTGCCGATCTTGCTACCA-CAACCCTCAGTCTGA
* * * * *
14981 TGC-GATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAATCGATGAAACGAGTGGGCGGGT
1 T-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * *
15045 GGGCACTACGTAGGCCAAAGA-GCAGGGATGCGTAAGCCGTGGATCGATAGGTTGGTAGGTGGGT
65 GGGCACTACGCAGACCAGAGAGGC-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* **
15109 TTAGGCACATCTTCATATTTTTGCCACACCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
15174 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCTCGATTTTT
194 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTCGATTTTT
*
15239 GAAACTTTTTACAGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
259 GAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* ** * * *
15304 TAGACGTGATCCTTTTATTTTTTTTGGCATGTGCAAAACAATTCAGCTAAAAACTCAAACTGTAC
324 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
15369 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
389 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
15434 ACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * *
15499 GCCAATATATA-GGCTAAGTACTAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCTCC
519 GCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCC-CC
** * *
15563 AATCGTTGGAACCCCATTG-CTCCGGTCAGGTTCTCCGACGATGCTCTGGCGATAGTCCCCCGGA
582 AATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGAT-GTCCCCCGGA
* * * *
15627 CCAAAAAAAAATACGGCACCAACACATGCCCGAGCCCAGTATGTGCACCCGTAACTCTCGGTCTG
646 -CAAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTG
15692 ATCT-GATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
710 ATCTCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
* * * *
15756 CGGTCAGTCGGCCAGAGGGGCAGG-TGCCCAAGTCGGGGATCAATCGGGTCCCCCCTACGTGCTG
775 CGCTCAGCCGGCCAGAGGGGCAGGATGCCCAAGTCGGGGATCGATCGGGTCCCCCCTACATGCTG
* *
15820 CTGATCTTGCTACCACAACCCTCAGTCCGA
840 CCGATCTTGCTACCACAACCCTCAGTCTGA
* * * *
15850 TCTGATCTTAGACTGGGAATGAACTCTGTATGCCTATGCCAACCGACAAAACGAGCGGGCAGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * *
15915 GGCACTACGCAGACTAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCAGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
15980 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
16045 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTCGATTTTTGA
* *
16110 AACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTA
261 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
** * * * * *
16175 GATATGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTATACAA
326 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* *
16240 AATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
16305 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
*
16370 CAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGTACACCACCCCCCACCCCGCC
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CA----CC-CCCCGCC
* * * *
16435 CCCTCAATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTTCGACGA-----T-G-G-TG-CCTC
578 CCC-CAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGTCCCC
** * * *
16491 TAG-CGAAAAAAAATGA-GGCACCAGCACTTGCTCGAGCCCAGTATGTGCACCCGTAACCCTCGG
642 CGGACAAAAAAAAAT-ACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGTAACCCTCGG
**
16554 TCCAAAT-TCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
706 T-CTGATCTCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
** *
16618 GCGGGCATTCAGCCGGCCAGAGGGGCAGGATGCACAAG
770 GCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCCCAAG
16656 CCCGGTGTCA
Statistics
Matches: 4570, Mismatches: 468, Indels: 340
0.85 0.09 0.06
Matches are distributed among these distances:
864 112 0.02
865 135 0.03
866 65 0.01
867 254 0.06
868 611 0.13
869 758 0.17
870 71 0.02
871 16 0.00
872 3 0.00
873 84 0.02
874 67 0.01
875 9 0.00
876 98 0.02
877 82 0.02
878 21 0.00
879 1 0.00
880 4 0.00
881 3 0.00
882 1 0.00
883 1 0.00
884 39 0.01
885 10 0.00
886 6 0.00
887 209 0.05
888 525 0.11
889 46 0.01
890 220 0.05
891 60 0.01
892 32 0.01
893 143 0.03
894 677 0.15
895 43 0.01
896 74 0.02
897 8 0.00
898 8 0.00
899 35 0.01
900 20 0.00
901 6 0.00
902 13 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (869 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
GGCACTACGCAGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTCGATTTTTGA
AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATC
GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGTCCCCCGGACAAAA
AAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGATCTCG
ATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCCGGCCAGAGGGGCAGGATGCCCAAGTCGGGGATCGATCGGGTCCCCCCTACATGCTGCCGATC
TTGCTACCACAACCCTCAGTCTGA
Done.