genome.fa.s508.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168333.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_556, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22996

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3701--3744	22	2.0	22	95	0	79	31	11	13	43	1.80
7556--7599	22	2.0	22	95	0	79	31	11	13	43	1.80
12517--12556	22	1.9	20	85	10	53	17	2	32	47	1.61
13781--13934	82	1.9	82	91	0	254	27	14	7	49	1.71
16333--16380	21	2.2	23	85	7	64	66	0	2	31	1.03
16412--16441	15	2.0	15	100	0	60	53	6	0	40	1.27
17340--17379	21	1.9	21	89	0	62	50	5	0	45	1.23
17418--17458	5	7.8	5	84	10	55	26	0	0	73	0.84
17422--17454	17	1.9	17	100	0	66	27	0	0	72	0.85
17414--17468	21	2.5	22	88	8	76	32	1	0	65	1.03
17980--18013	17	2.1	16	89	10	52	50	0	0	50	1.00
18058--18097	22	1.9	22	85	10	57	52	5	0	42	1.23
18055--18102	20	2.4	18	78	18	51	56	4	0	39	1.19
18351--18381	16	2.0	15	93	6	53	38	0	0	61	0.96
19132--19216	42	2.0	42	81	0	98	25	9	42	22	1.83
19280--19333	24	2.2	24	87	6	83	20	16	48	14	1.81
19154--19305	69	2.2	69	83	5	195	26	9	43	21	1.82
19226--19677	93	4.9	92	85	9	582	24	11	44	18	1.83
19365--19417	24	2.2	23	80	9	61	22	11	56	9	1.63
19373--19424	24	2.2	24	92	0	86	19	15	53	11	1.71
19197--19677	177	2.6	183	83	8	602	24	11	45	18	1.83
19728--19759	15	2.1	15	94	0	55	21	6	65	6	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19635--19912	150	1.9	150	98	0	538	22	10	47	20	1.80
19747--19894	69	2.2	66	87	6	208	22	10	46	20	1.80
19800--20020	108	2.0	108	97	0	415	22	10	47	18	1.79
19383--20668	258	5.0	258	93	3	2036	23	10	46	19	1.81
19883--20162	150	1.9	148	90	2	411	22	10	48	18	1.78
19986--20017	15	2.1	15	94	0	55	21	6	65	6	1.38
20136--20164	15	1.9	15	100	0	58	20	6	68	3	1.27
20058--20278	108	2.0	108	96	0	406	22	11	47	18	1.80
20142--20420	150	1.9	149	90	2	391	22	10	48	18	1.77
20244--20275	15	2.1	15	94	0	55	21	6	65	6	1.38
20394--20422	15	1.9	15	100	0	58	20	6	68	3	1.27
20316--20536	108	2.0	108	96	0	406	22	11	47	18	1.80
20502--20533	15	2.1	15	94	0	55	21	6	65	6	1.38
20634--20727	24	3.9	23	90	5	91	23	12	51	12	1.74
20648--20740	24	3.9	24	95	0	141	23	12	51	11	1.73
20891--21031	33	4.3	32	71	21	112	22	9	39	28	1.85
20961--21012	27	1.9	27	100	0	104	19	7	38	34	1.80
20891--21163	72	3.6	72	74	15	246	23	8	38	29	1.83

Tables:   1

The End!