Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168337.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_56, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 149304
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
File 2 of 4
Found at i:47825 original size:17 final size:18
Alignment explanation
Indices: 47796--47847 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 18
47786 AGAAAATTTT
47796 AAAACAAATAAAAAAATG
1 AAAACAAATAAAAAAATG
47814 AAAACAAA-AAAAAAATG
1 AAAACAAATAAAAAAATG
* *
47831 AAAGCACATGAAAAAAA
1 AAAACAAAT-AAAAAAA
47848 AGTAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 15 0.50
18 8 0.27
19 7 0.23
ACGTcount: A:0.77, C:0.08, G:0.08, T:0.08
Consensus pattern (18 bp):
AAAACAAATAAAAAAATG
Found at i:48273 original size:16 final size:17
Alignment explanation
Indices: 48252--48284 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
48242 TAACAATTTG
48252 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
48268 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
48285 TGAAATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:48292 original size:19 final size:18
Alignment explanation
Indices: 48247--48293 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
48237 GGTAATAACA
48247 ATTTGAAATAG-ATAATT
1 ATTTGAAATAGTATAATT
*
48264 A-TTCAAATAGTCATAATT
1 ATTTGAAATAGT-ATAATT
48282 ATTTGAAATAGT
1 ATTTGAAATAGT
48294 TTTGTAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 8 0.32
17 1 0.04
18 7 0.28
19 9 0.36
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (18 bp):
ATTTGAAATAGTATAATT
Found at i:48570 original size:181 final size:178
Alignment explanation
Indices: 48323--50957 Score: 1465
Period size: 181 Copynumber: 14.6 Consensus size: 178
48313 TGACTTTTTA
* * * *
48323 TTTTGT-ATTAAAACAATTGTTTCTGTTCATACAAGCTTATTC-AGATTAAAATAATATTAATTT
1 TTTTGTCA-TAAAATAATTGTTTC-ATTCACACAAGCTTATTCGA-AATAAAATAATA-TAATTT
* * * *
48386 ATTAATATTTTGACAATTAACAAGTGAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCA
62 ATTAATATTTTAAAAATTAATAAGT-AAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCA
* * * * *
48451 AATAGTCAAGACTATTTGAATAATTATCTATTTCAAATAATTATGACCATCTA
126 AATAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCATTTG
* * * * * *
48504 TTTTGTAATAAAATAATTGTTTCAGTTAACATAAGCTTATTTGAAATAAAATAGCTGTAATTTAT
1 TTTTGTCATAAAATAATTGTTTCA-TTCACACAAGCTTATTCGAAATAAAATA-ATATAATTTAT
* * * * * * * * **
48569 TAATATATCAAAAATTAATGAGTAAGAGAATTAAAAAATGAATCTATTGATAGAACAAGTTCAAA
64 TAATATTTTAAAAATTAATAAGTAA-AGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAA
* *
48634 TAGTTATGACTATCTAAATAATTATCTATTT-AAAAAATTATGACCATTTG
128 TAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCATTTG
** **
48684 TTTTGTCATAAAATAATTAGTTTTGTTCATGCAAGCTTATTTCG-AATAAAATAATATAAATTTA
1 TTTTGTCATAAAATAATT-GTTTCATTCACACAAGCTTA-TTCGAAATAAAATAATAT-AATTTA
* **** * * ***
48748 TTAAAACGCCAAAAATTAATAAATAAAAATTTAAAAAATAAATATGTTTTTTGAACACA-TTC-A
63 TTAATATTTTAAAAATTAATAAGTAAAGATTTAAAAAATAAATATGTTTACCGAACA-AGTTCAA
* * *
48811 ATAGTTATGACTATTTAAATAATTATCTATTTCAAATCATTATAACAATTTG
127 ATAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCATTTG
** * * *
48863 TTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTGTTCGAAATAAAATAATATTAATTTAT
1 TTTTGTCATAAAATAATTGTTTC-ATTCACACAAGCTTATTCGAAATAAAATAATA-TAATTTAT
* * * *
48928 TAATATTTCT-AAAATTAATAAGTGAAAGATTTAAATAATAAATTTGTTTACCGAGCAAGTTTAA
64 TAATATTT-TAAAAATTAATAAGT-AAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAA
* * * * ** * *
48992 ATAGTTATTACTATTTGAACAATTATATATTTCAAATCTTTATGATCTTTTG
127 ATAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCATTTG
* * *
49044 TTTTGTCATAAAATAATTGTTTTTATTCACACAAGTTTATTCGAAATAAAATAATTCTAATTTAT
1 TTTTGTCATAAAATAATTG-TTTCATTCACACAAGCTTATTCGAAATAAAATAA-TATAATTTAT
* * * * * * * *
49109 TATTATTCTAAAAATTGATAAGTTAGAGATTTAAAAAATAAATCTGTTTATCGAATAAGTTTAAA
64 TAATATTTTAAAAATTAATAAG-TAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAA
* * * * * * * * *
49174 TAGTCATGTCCATTTGAACT-GTTATTTATTTTAAATCATTATGA-TATTTTG
128 TAGTTATGACTATTT-AAATAATTATCTATTTCAAATAATTATGACCA-TTTG
* * * ** **
49225 TTTTATTATAAAATAATTGTTTCTATTCATACAAAATTATTC-AGAATAAAATAATGCCAATTTA
1 TTTTGTCATAAAATAATTGTTTC-ATTCACACAAGCTTATTCGA-AATAAAATAAT-ATAATTTA
* * * **
49289 TTACTATTTTGAAAATTAAT-A--AAA-ATTT-AAAAATAAATGTGTTTTTCGAATCAA-TTCAA
63 TTAATATTTTAAAAATTAATAAGTAAAGATTTAAAAAATAAATATGTTTACCGAA-CAAGTTCAA
* * * * * * *
49348 ATAGTTAAGACTATTAAAATTATTATCTATTCCAAATTATTCTGA-TATTTTG
127 ATAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCA-TTTG
* * * * * * *
49400 TTTAGTCAAAAAATAATTGTTTTAGTTCATACATGCTTATTCGAAATATAGTAATACTAATTTAT
1 TTTTGTCATAAAATAATTGTTTCA-TTCACACAAGCTTATTCGAAATAAAATAATA-TAATTTAT
* * * * * * *
49465 TAA-AATTTAGAAAATTAATAA--AAA-ATTT-TAAAA-AAAT-CGATCTACTGAATAAATTCAA
64 TAATATTTTA-AAAATTAATAAGTAAAGATTTAAAAAATAAATATG-TTTACCGAACAAGTTCAA
* * * * * ** * *
49523 ATAATTATGAATATTTGAACAATTATCTATTTAAAATCGTTATGACCTTTTA
127 ATAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCATTTG
* * * * * * * * **
49575 TTTTATCATAAAACAACTGTTTCAGTACATAAAAG-TTTTTCCAAAATAAAATAATATTGCTTTA
1 TTTTGTCATAAAATAATTGTTTCA-TTCACACAAGCTTATT-CGAAATAAAATAATA-TAATTTA
* * ** * *** **
49639 TTAATATTTCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATCA-GTTTATAAAATTA-TTCA
63 TTAATATTTTAAAAATTAATAAG-TAAAGATTTAAAAAATAAAT-ATGTTTACCGAACAAGTTCA
* ** *** * ** * *
49702 AATAATCCTGGGAATTTGAATAATTATCTATTTCAAATCGTTATAAAC-TTTG
126 AATAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCATTTG
* ** * * * * *
49754 TTTTGTCATAAAACAATTGTTTTTTATCATACAAGCCTATTTGGAACAAAATAATACTAATTTAT
1 TTTTGTCATAAAATAATTGTTTCAT-TCACACAAGCTTATTCGAAATAAAATAATA-TAATTTAT
* * * *
49819 TAATATTTCAAAAATTAAT-A--AAAGATTTAAAAAATTAATTTGTTTACTGAATCAA-TTCAAA
64 TAATATTTTAAAAATTAATAAGTAAAGATTTAAAAAATAAATATGTTTACCGAA-CAAGTTCAAA
* * ** * *
49880 TAGTTATGACTATTTAAACAATTATATATTTCAAATTGTTATAACCTTTTG
128 TAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCATTTG
* * * * * * * *
49931 TTATCTCATAAAACAATTATTTCTATTCACACAAGTTTATTTGAAATAAAATAATAGTAATATAA
1 TTTTGTCATAAAATAATTGTTTC-ATTCACACAAGCTTATTCGAAATAAAATAATA-TAATTTAT
* * * * * *
49996 TAATATTCTGAAAATTAATAACTAAAAGATTTAAAAAATAAATTTGTTTACTGAACTAGTTCAAA
64 TAATATTTTAAAAATTAATAAGT-AAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAA
* * * * * * * * *
50061 TATTTAGGGCTATATGAACAATTATTTACTTCAAATCATTATGA-CATTTTG
128 TAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCA-TTTG
* * * * * * * *
50112 TTTTGTCGTAAAACAATTTTTTTCATTTCTA-AGTAA-CTTATTCGGAATAAAGTAAAACAAATT
1 TTTTGTCATAAAATAA-TTGTTTCA-TTC-ACA-CAAGCTTATTCGAAATAAAATAATA-TAATT
* * * * * * * * *
50175 TATTAATATTTCAAAACTTAATAAGCAAAAGATTTAAAAAA-CAATTTAATTTGCCTAACCAGTT
61 TATTAATATTTTAAAAATTAATAAG-TAAAGATTTAAAAAATAAATAT-GTTTACCGAACAAGTT
* * * * * * **** *
50239 CAAATAATTATGACTATTTGAACAATTATCTATTTCTAATCATCATGTTTTTTTTA
124 CAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATG-ACCATTTG
* * * * * * * *
50295 TTTTGTCATAAAACAAATGTTT-TTGTGCATATAAGTTTGTTC-AGAATAAAACAATATTAATTT
1 TTTTGTCATAAAATAATTGTTTCAT-T-CACACAAGCTTATTCGA-AATAAAATAATA-TAATTT
* * * * **
50358 ATTAATATTTTGAAAATTAAGAAGT-AAGAAATTAAAAAA-AAAAATGTTTACTAAATC-AGTTC
62 ATTAATATTTTAAAAATTAATAAGTAAAG-ATTTAAAAAATAAATATGTTTACCGAA-CAAGTTC
* * * * * *
50420 AATTAGTTATAACTATTTGAACAATTATTTATTTCAAATCATTATGACCATTTG
125 AAATAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCATTTG
* * * * * *
50474 TATTGTCATAAAATAATTATTT-ATGTTTATAC-AGTCTTATTCAAAATAAAGTAATACTAATTT
1 TTTTGTCATAAAATAATTGTTTCA--TTCACACAAG-CTTATTCGAAATAAAATAATA-TAATTT
* * * * * *
50537 ATCAATATTTT-GAAATTAATAAGTAATAGATTTAAAAAATGAAT-TAATTGACCTG-ACCAGTG
62 ATTAATATTTTAAAAATTAATAAGTAA-AGATTTAAAAAATAAATAT-GTTTACC-GAACAAGT-
* *
50599 T-AAATAGTTATGATTATTTAAATAATTATCTATTTCAAATCATTATGA-CATTTTG
123 TCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCA-TTTG
* * * * *
50654 TTTTATCATAAAATAATTATTTCA-TCACAAAACAATTGTTTCTATCTGTACTAGCTTATTTGAA
1 TTTTGTCATAAAATAATTGTTTCATTCAC---ACAA--GCTTAT-TC-G-A--A----A--TAAA
* *
50718 ATAATATAATTCTATTTTATTAATATTTAAAAAATTAATAAG---AGATTTAAAAAATAAATCTG
50 ATAATAT-A----A-TTTATTAATATTTTAAAAATTAATAAGTAAAGATTTAAAAAATAAATATG
* * * * * *** *
50780 TTTATCGAACAAGTGCAAATAATTATGACTATTTGAATAATTATCTATTTCTAATCGCTATAACC
109 TTTACCGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACC
* *
50845 TTTTA
174 ATTTG
* * * * * *
50850 TTTTGTCCTAAAACAAAAT-TTTCTATTCATACAAGCTTATTTCG-AATAAAATTATACAAATTT
1 TTTTGTCATAAAA-TAATTGTTTC-ATTCACACAAGCTTA-TTCGAAATAAAATAATA-TAATTT
* *
50913 ATTAATA-TTCAAACAACTAATAAGTAAAAGATTTAAAAAATAAAT
62 ATTAATATTTTAAA-AATTAATAAGT-AAAGATTTAAAAAATAAAT
50958 CTATTTATCA
Statistics
Matches: 1901, Mismatches: 429, Indels: 248
0.74 0.17 0.10
Matches are distributed among these distances:
174 15 0.01
175 248 0.13
176 70 0.04
177 91 0.05
178 60 0.03
179 244 0.13
180 304 0.16
181 522 0.27
182 177 0.09
183 24 0.01
184 4 0.00
186 1 0.00
188 2 0.00
192 2 0.00
193 6 0.00
194 10 0.01
195 5 0.00
196 83 0.04
197 6 0.00
198 4 0.00
199 12 0.01
200 11 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (178 bp):
TTTTGTCATAAAATAATTGTTTCATTCACACAAGCTTATTCGAAATAAAATAATATAATTTATTA
ATATTTTAAAAATTAATAAGTAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAG
TTATGACTATTTAAATAATTATCTATTTCAAATAATTATGACCATTTG
Found at i:48842 original size:16 final size:17
Alignment explanation
Indices: 48821--48853 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
48811 ATAGTTATGA
48821 CTATTT-AAATAATTAT
1 CTATTTCAAATAATTAT
*
48837 CTATTTCAAATCATTAT
1 CTATTTCAAATAATTAT
48854 AACAATTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
CTATTTCAAATAATTAT
Found at i:49873 original size:531 final size:535
Alignment explanation
Indices: 48332--50957 Score: 1508
Period size: 531 Copynumber: 4.8 Consensus size: 535
48322 ATTTTGTATT
* * * * *
48332 AAAACAATTGTTTCTGTTCATACAAGCTTATTC-AGATTAAAATAATATTAATTTATTAATATTT
1 AAAACAATTATTTCTATTCATACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAAAATTT
* * * * * * * * * *
48396 TGACAATTAACAAGTGAAAGATTTAAAAAATAAATAT-GTTTACCAAACAAGTTCAAATAGTCAA
65 AGAAAATTAATAA--GAAAGATTTAAATAATAAAT-TCGTCTACCGAACAAATTCAAATAATTAT
* * * * ** * * * * * *
48460 GACTATTTGAATAATTATCTATTTCAAATAATTATGACCATCTATTTTGTAATAAAATAATTG-T
127 GAATATTTGAACAATTATATATTTAAAATCGTTATGACCTTTTATTTTATCATAAAACAACTGTT
* * ** ** *
48524 TTCAGTTA-ACATAAGCTTATTTGAAATAAAATAGCTGTAATTTATTAATATATC-AAAAATTAA
192 TTCA--TACACAAAAGTTTATTCAAAATAAAATAATTCTAATTTATTAATAT-TCTAAAAATTAA
* * * * * * * * * * *
48587 TG-AGTAAGAGAATTAAAAAATGAATCTA-TTGATAGAACAAGTTCAAATAGTTATGACTATCT-
254 -GAAGTTAGAGATTTAAAAAATAAATC-AGTTTATAAAATAAGTTCAAATAATCATGGCAATTTG
* ** * *
48649 AAATAATTATCTATTT-AAAAAATTATG-ACCATTTGTTTTGTCATAAAATAATTAGTTTTGT-T
317 AACT-ATTATCTATTTCAAATCATTATGAAAC-TTTGTTTTGTCATAAAATAATT-GTTTTCTAT
* * * ***
48711 CATGCAAGCTTATTTCGAATAAAATAATA-TAAATTTATTAAAACGCCAAAAATTAATAAATAAA
379 CATACAAGCTTATTTAGAATAAAATAATACT-AATTTATTAATATTTCAAAAA-T--T-AATAAA
48775 AATTTAAAAAATAAATATGTTTTTTGAA-CACATTC-AATAGTTATGACTATTTAAATAATTATC
439 AATTTAAAAAATAAATATG-TTTTTGAATCA-ATTCAAATAGTTATGACTATTTAAATAATTATC
* * *
48838 TATTTCAAATCATTATAACAATTTGTTTTGTCAT
502 TATTTCAAATTATTATAACAATTTGTTTAGTCAA
* * * * *
48872 AAACCAATTATTTCTATTCATACAAGCTTGTTCGAAATAAAATAATATTAATTTATTAATATTTC
1 AAAACAATTATTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAAAATTTA
* * * * * * * *
48937 TAAAATTAATAAGTGAAAGATTTAAATAATAAATTTGTTTACCGAGCAAGTTTAAATAGTTATTA
66 GAAAATTAATAA--GAAAGATTTAAATAATAAATTCGTCTACCGAACAAATTCAAATAATTATGA
* * * * * * * *
49002 CTATTTGAACAATTATATATTTCAAATCTTTATGATCTTTTGTTTTGTCATAAAATAATTGTTTT
129 ATATTTGAACAATTATATATTTAAAATCGTTATGACCTTTTATTTTATCATAAAACAACTGTTTT
* * * * * * *
49067 TATTCACACAAGTTTATTCGAAATAAAATAATTCTAATTTATTATTATTCTAAAAATTGATAAGT
194 CATACACAAAAGTTTATTCAAAATAAAATAATTCTAATTTATTAATATTCTAAAAATTAAGAAGT
* ** * * * * *
49132 TAGAGATTTAAAAAATAAATCTGTTTATCGAATAAGTTTAAATAGTCATGTCCATTTGAACTGTT
259 TAGAGATTTAAAAAATAAATCAGTTTATAAAATAAGTTCAAATAATCATGGCAATTTGAACTATT
* * * * * * **
49197 ATTTATTTTAAATCATTATGATATTTTGTTTTATTATAAAATAATTG-TTTCTATTCATACAAAA
324 ATCTATTTCAAATCATTATGAAACTTTGTTTTGTCATAAAATAATTGTTTTCTA-TCATACAAGC
* * * * **
49261 TTATTCAGAATAAAATAATGCCAATTTATTACTATTTTGAAAATTAATAAAAATTT-AAAAATAA
388 TTATTTAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAAATTTAAAAAATAA
* * * * * *
49325 ATGTGTTTTTCGAATCAATTCAAATAGTTAAGACTATTAAAATTATTATCTATTCCAAATTATTC
453 ATATGTTTTT-GAATCAATTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTATTA
* * *
49390 TGATATTTTGTTTAGTCAA
517 TAACAATTTGTTTAGTCAA
* * * * *
49409 AAAATAATTGTTT-TAGTTCATACATGCTTATTCGAAATATAGTAATACTAATTTATTAAAATTT
1 AAAACAATTATTTCTA-TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAAAATTT
* * *
49473 AGAAAATTAATAA-AAA-ATTTTAA-AA-AAA-TCGATCTACTGAATAAATTCAAATAATTATGA
65 AGAAAATTAATAAGAAAGATTTAAATAATAAATTCG-TCTACCGAACAAATTCAAATAATTATGA
*
49533 ATATTTGAACAATTATCTATTTAAAATCGTTATGACCTTTTATTTTATCATAAAACAACTG-TTT
129 ATATTTGAACAATTATATATTTAAAATCGTTATGACCTTTTATTTTATCATAAAACAACTGTTTT
* **
49597 CAGTACATAAAAGTTT-TTCCAAAATAAAATAATAT-TGCTTTATTAATATT-TCAAAAATTAAG
194 CA-TACACAAAAGTTTATT-CAAAATAAAATAAT-TCTAATTTATTAATATTCT-AAAAATTAAG
* * * * *
49659 AAGTTGGAGTTTTAAAAAATAAATCAGTTTATAAAATTA-TTCAAATAATCCTGGGAATTTGAA-
255 AAGTTAGAGATTTAAAAAATAAATCAGTTTATAAAATAAGTTCAAATAATCATGGCAATTTGAAC
* * *
49722 TAATTATCTATTTCAAATCGTTAT-AAACTTTGTTTTGTCATAAAACAATTGTTTTTTATCATAC
320 T-ATTATCTATTTCAAATCATTATGAAACTTTGTTTTGTCATAAAATAATTGTTTTCTATCATAC
* * *
49786 AAGCCTATTTGGAACAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAAGATTTAAAA
384 AAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAA-ATTTAAAA
* * * * *
49851 AATTAATTTGTTTACTGAATCAATTCAAATAGTTATGACTATTTAAACAATTATATATTTCAAAT
448 AATAAATATGTTT-TTGAATCAATTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAAT
* ** * *
49916 TGTTATAACCTTTTG-TTATCTCAT
512 TATTATAACAATTTGTTTA-GTCAA
* * * * * * *
49940 AAAACAATTATTTCTATTCACACAAGTTTATTTGAAATAAAATAATAGTAATATAATAATATTCT
1 AAAACAATTATTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAAAATT-T
* * * * * * * * *
50005 -GAAAATTAATAACTAAAAGATTTAAAAAATAAATTTGTTTACTGAACTAGTTCAAATATTTAGG
65 AGAAAATTAATAA--GAAAGATTTAAATAATAAATTCGTCTACCGAACAAATTCAAATAATTATG
** * * * * * * * * * * *
50069 GCTATATGAACAATTATTTACTTCAAATCATTATGACATTTTGTTTTGTCGTAAAACAATTTTTT
128 AATATTTGAACAATTATATATTTAAAATCGTTATGACCTTTTATTTTATCATAAAACAACTGTTT
* * * ** * ** * *
50134 TCATTTCTA-AGTAA-CTTATTCGGAATAAAGTAAAACAAATTTATTAATATT-TCAAAACTTAA
193 TCA-TAC-ACA-AAAGTTTATTCAAAATAAAATAATTCTAATTTATTAATATTCT-AAAAATTAA
* ** * * * * * **** ** * * *
50196 TAAGCAAAAGATTTAAAAAACAATTTAATTTGCCTAACCAGTTCAAATAATTATGACTATTTGAA
254 GAAGTTAGAGATTTAAAAAATAAATCAGTTTATAAAATAAGTTCAAATAATCATGGCAATTTGAA
* * * **** * * * *
50261 CAATTATCTATTTCTAATCATCATGTTTTTTTTATTTTGTCATAAAACAAATGTTTT-TGTGCAT
319 CTATTATCTATTTCAAATCATTATG-AAACTTTGTTTTGTCATAAAATAATTGTTTTCTAT-CAT
* * * * * * **
50325 ATAAGTTTGTTCAGAATAAAACAATATTAATTTATTAATATTTTGAAAATTAAGAAGTAAGAAA-
382 ACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTTCAAAAATT---AA-TAA-AAAT
* * * * * * * * *
50389 TTAAAAAA-AAAAATGTTTACTAAATCAGTTCAATTAGTTATAACTATTTGAACAATTATTTATT
442 TTAAAAAATAAATATGTTT-TTGAATCAATTCAAATAGTTATGACTATTTAAATAATTATCTATT
* * * *
50453 TCAAATCATTATGACCATTTGTATT-GTCAT
506 TCAAATTATTATAACAATTTGT-TTAGTCAA
* * * * * * * *
50483 AAAATAATTATTTATGTTTATAC-AGTCTTATTCAAAATAAAGTAATACTAATTTATCAATATTT
1 AAAACAATTATTTCTATTCATACAAG-CTTATTCGAAATAAAATAATACTAATTTATTAAAATTT
* * * ** * * *
50547 TG-AAATTAATAAGTAATAGATTTAAAAAATGAATTAAT-TGACCTG-ACCAGTGT-AAATAGTT
65 AGAAAATTAATAAG-AA-AGATTTAAATAATAAATTCGTCT-ACC-GAACAAAT-TCAAATAATT
* * * * * * * * *
50608 ATGATTATTTAAATAATTATCTATTTCAAATCATTATGACATTTTGTTTTATCATAAAATAA-T-
125 ATGAATATTTGAACAATTATATATTTAAAATCGTTATGACCTTTTATTTTATCATAAAACAACTG
* * *
50671 TATTTCATCACAAAACAATTGTTTCTATCTGTACTAGCTTATTTGAAATAATATAATTCTATTTT
190 T-TTTCAT-ACACAA-AA--G-TT-TA----T--T--C--A----AAATAAAATAATTCTAATTT
* * ** * *
50736 ATTAATATT-TAAAAAATT---AA-TAAGAGATTTAAAAAATAAATCTGTTTATCGAACAAGTGC
234 ATTAATATTCT-AAAAATTAAGAAGTTAGAGATTTAAAAAATAAATCAGTTTATAAAATAAGTTC
* * * * ** * * *
50796 AAATAATTATGACTATTTGAA-TAATTATCTATTTCTAATCGCTAT-AACCTTTTATTTTGTCCT
298 AAATAATCATGGCAATTTGAACT-ATTATCTATTTCAAATCATTATGAAAC-TTTGTTTTGTCAT
* ** * * *
50859 AAAACAA-AATTTTCTATTCATACAAGCTTATTTCGAATAAAATTATACAAATTTATTAATA-TT
361 AAAATAATTGTTTTCTA-TCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTT
50922 CAAACAACTAATAAGTAAAAGATTTAAAAAATAAAT
425 CAAA-AA-T--TAA-TAAAA-ATTTAAAAAATAAAT
50958 CTATTTATCA
Statistics
Matches: 1634, Mismatches: 357, Indels: 173
0.76 0.16 0.08
Matches are distributed among these distances:
529 74 0.05
530 57 0.03
531 281 0.17
532 7 0.00
533 6 0.00
534 6 0.00
535 11 0.01
536 23 0.01
537 200 0.12
538 69 0.04
539 51 0.03
540 269 0.16
541 156 0.10
542 96 0.06
543 118 0.07
544 10 0.01
545 7 0.00
546 4 0.00
550 1 0.00
552 1 0.00
554 11 0.01
555 63 0.04
556 78 0.05
557 5 0.00
558 1 0.00
560 29 0.02
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (535 bp):
AAAACAATTATTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAAAATTTA
GAAAATTAATAAGAAAGATTTAAATAATAAATTCGTCTACCGAACAAATTCAAATAATTATGAAT
ATTTGAACAATTATATATTTAAAATCGTTATGACCTTTTATTTTATCATAAAACAACTGTTTTCA
TACACAAAAGTTTATTCAAAATAAAATAATTCTAATTTATTAATATTCTAAAAATTAAGAAGTTA
GAGATTTAAAAAATAAATCAGTTTATAAAATAAGTTCAAATAATCATGGCAATTTGAACTATTAT
CTATTTCAAATCATTATGAAACTTTGTTTTGTCATAAAATAATTGTTTTCTATCATACAAGCTTA
TTTAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAAATTTAAAAAATAAATA
TGTTTTTGAATCAATTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTATTATAAC
AATTTGTTTAGTCAA
Found at i:50012 original size:356 final size:351
Alignment explanation
Indices: 48323--50676 Score: 1360
Period size: 356 Copynumber: 6.6 Consensus size: 351
48313 TGACTTTTTA
* * *
48323 TTTTGT-ATTAAAACAATTGTTTCTGTTCATACAAGCTTATTC-AGATTAAAATAATATTAATTT
1 TTTTGTCA-TAAAATAATTGTTT-TGTTCATACAAGCTTATTCGA-AATAAAATAATACTAATTT
* ** * * * * *
48386 ATTAATATTTTGACAATTAACAAGTGAAAGATTTAAAAAATAAATATGTTTAC-CAAACAAGTTC
63 ATTAAAATTTCAAAAATTAATAA---AAA-ATTTAAAAAATAAATTTGTTTACTGAATCAA-TTC
* * * * * * * * * *
48450 AAATAGTCAAGACTATTTGAATAATTATCTATTTCAAATAATTATGACCA-TCTATTTTGTAATA
123 AAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTAT-AACATTTTGTTTTATCATA
* * * * * * * *
48514 AAATAATTGTTTC-AGTTAACATAAGCTTATTTGAAATAAAATAGCT-GTAATTTATTAATATAT
187 AAACAATTATTTCTA-TTCATACAAGTTTATTCGAAATAAAATA-ATAGTAATTTATTAATAT-T
* * * * * * * ** *
48577 C-AAAAATTAATGAGTAAGAGAATTAAAAAATGAATCTATTGATAGAACAAGTTCAAATAGTTAT
249 CTGAAAATTAATAAGT--GAGATTTAAAAAATAAATCTGTTTATAAAATTA-TTCAAATAGTTAA
* * ** * *
48641 GACTATCTAAATAATTATCTATTT-AAAAAATTATGACCATTTG
311 GA--ATTTGAATAATTATCTATTTCAAATCATTATAAAC-TTTG
*
48684 TTTTGTCATAAAATAATTAGTTTTGTTCATGCAAGCTTATTTCG-AATAAAATAATA-TAAATTT
1 TTTTGTCATAAAATAATT-GTTTTGTTCATACAAGCTTA-TTCGAAATAAAATAATACT-AATTT
*** * **
48747 ATTAAAACGCCAAAAATTAATAAATAAAAATTTAAAAAATAAATATGTTTTTTGAA-CACATTC-
63 ATTAAAATTTCAAAAATTAAT--A-AAAAATTTAAAAAATAAATTTGTTTACTGAATCA-ATTCA
* * *
48810 AATAGTTATGACTATTTAAATAATTATCTATTTCAAATCATTATAACAATTTGTTTTGTCATAAA
124 AATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATAACATTTTGTTTTATCATAAA
* * * *
48875 CCAATTATTTCTATTCATACAAGCTTGTTCGAAATAAAATAATATTAATTTATTAATATTTCT-A
189 ACAATTATTTCTATTCATACAAGTTTATTCGAAATAAAATAATAGTAATTTATTAATA-TTCTGA
* * * * *
48939 AAATTAATAAGTGAAAGATTTAAATAATAAATTTGTTTACCGAGCAAGT-TT-AAATAGTTATTA
253 AAATTAATAAGTG--AGATTTAAAAAATAAATCTGTTTA--TA-AAATTATTCAAATAGTTA--A
** * * * * *
49002 CTATTTGAACAATTATATATTTCAAATCTTTATGATCTTTTG
311 GAATTTGAATAATTATCTATTTCAAATCATTATAAAC-TTTG
* * * *
49044 TTTTGTCATAAAATAATTGTTTTTATTCACACAAGTTTATTCGAAATAAAATAATTCTAATTTAT
1 TTTTGTCATAAAATAATTG-TTTTGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTAT
** * * * *
49109 TATTA-TTCTAAAAATTGATAAGTTAGAGATTTAAAAAATAAATCTGTTTA-TCGAAT-AAGTTT
65 TAAAATTTC-AAAAATTAATAA---A-AAATTTAAAAAATAAATTTGTTTACT-GAATCAA-TTC
* * * * ** * * * * *
49171 AAATAGTCATGTCCATTTGAACTGTTATTTATTTTAAATCATTATGATATTTTGTTTTATTATAA
123 AAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATAACATTTTGTTTTATCATAA
* * ** * * *
49236 AATAATTGTTTCTATTCATACAAAATTATTC-AGAATAAAATAAT-GCCAATTTATTACTATTTT
188 AACAATTATTTCTATTCATACAAGTTTATTCGA-AATAAAATAATAG-TAATTTATTAATATTCT
* * * ** *
49299 GAAAATTAATAA---AAATTT-AAAAATAAATGTGTTTTTCGAATCAATTCAAATAGTTAAGACT
251 GAAAATTAATAAGTGAGATTTAAAAAATAAATCTGTTTATAAAAT-TATTCAAATAGTTAAGA--
** * * * * * *
49360 ATTAAAATTATTATCTATTCCAAATTATTCTGATATTTTG
313 ATTTGAATAATTATCTATTTCAAATCATTAT-AAACTTTG
* * * * *
49400 TTTAGTCAAAAAATAATTGTTTTAGTTCATACATGCTTATTCGAAATATAGTAATACTAATTTAT
1 TTTTGTCATAAAATAATTGTTTT-GTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTAT
* * * *
49465 TAAAATTT-AGAAAATTAATAAAAAATTT-TAAAA-AAA-TCGATCTACTGAATAAATTCAAATA
65 TAAAATTTCA-AAAATTAATAAAAAATTTAAAAAATAAATTTG-TTTACTGAATCAATTCAAATA
* * * * * * * *
49526 ATTATGAATATTTGAACAATTATCTATTTAAAATCGTTATGACCTTTTATTTTATCATAAAACAA
128 GTTATGACTATTTAAACAATTATCTATTTCAAATCATTATAACATTTTGTTTTATCATAAAACAA
* * * * * * ** *
49591 CTGTTTC-AGTACATAAAAGTTT-TTCCAAAATAAAATAATATTGCTTTATTAATATT-TCAAAA
193 TTATTTCTA-TTCATACAAGTTTATT-CGAAATAAAATAATAGTAATTTATTAATATTCT-GAAA
* * * * **
49653 ATTAAGAAGTTGGAGTTTTAAAAAATAAATCAGTTTATAAAATTATTCAAATAATCCTGGGAATT
255 ATTAATAAG-T-GAGATTTAAAAAATAAATCTGTTTATAAAATTATTCAAATAGT--TAAGAATT
*
49718 TGAATAATTATCTATTTCAAATCGTTATAAACTTTG
316 TGAATAATTATCTATTTCAAATCATTATAAACTTTG
* * * * * *
49754 TTTTGTCATAAAACAATTGTTTTTTATCATACAAGCCTATTTGGAACAAAATAATACTAATTTAT
1 TTTTGTCATAAAATAATTGTTTTGT-TCATACAAGCTTATTCGAAATAAAATAATACTAATTTAT
* * *
49819 TAATATTTCAAAAATTAATAAAAGATTTAAAAAATTAATTTGTTTACTGAATCAATTCAAATAGT
65 TAAAATTTCAAAAATTAATAAAAAATTTAAAAAATAAATTTGTTTACTGAATCAATTCAAATAGT
* ** * * *
49884 TATGACTATTTAAACAATTATATATTTCAAATTGTTATAACCTTTTGTTATCTCATAAAACAATT
130 TATGACTATTTAAACAATTATCTATTTCAAATCATTATAACATTTTGTTTTATCATAAAACAATT
* * * *
49949 ATTTCTATTCACACAAGTTTATTTGAAATAAAATAATAGTAATATAATAATATTCTGAAAATTAA
195 ATTTCTATTCATACAAGTTTATTCGAAATAAAATAATAGTAATTTATTAATATTCTGAAAATTAA
* * * * * * * * *
50014 TAACTAAAAGATTTAAAAAATAAATTTGTTTACT-GAACTAGTTCAAATATTTAGGGCTATATGA
260 TAAGT--GAGATTTAAAAAATAAATCTGTTTA-TAAAATTA-TTCAAATAGTTA-AG-AATTTGA
* * * * *
50078 ACAATTATTTACTTCAAATCATTATGACATTTTG
319 ATAATTATCTATTTCAAATCATTAT-AAACTTTG
* * * * * * *
50112 TTTTGTCGTAAAACAA-T-TTTT-TTCATTTCTAAGTAACTTATTCGGAATAAAGTAAAACAAAT
1 TTTTGTCATAAAATAATTGTTTTGTTCA-TAC-AAG---CTTATTCGAAATAAAATAATACTAAT
* * * * * * *
50174 TTATTAATATTTCAAAACTTAATAAGCAAAAGATTTAAAAAA-CAATTTAATTTGCCT-AACCAG
61 TTATTAAAATTTCAAAAATTAAT-A--AAAA-ATTTAAAAAATAAATTT-GTTT-ACTGAATCAA
* * * * **** * *
50237 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCTAATCATCATGTTTTTTTTATTTTGTC
120 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTAT-AACATTTTGTTTTATC
* * * * * * * * *
50302 ATAAAACAAATGTTTTTGTGCATATAAGTTTGTTC-AGAATAAAACAATATTAATTTATTAATAT
184 ATAAAACAATTATTTCTATTCATACAAGTTTATTCGA-AATAAAATAATAGTAATTTATTAATAT
* * * * ** * *
50366 TTTGAAAATTAAGAAGTAAGAAATTAAAAAA-AAAAATGTTTACT-AAATCAGTTCAATTAGTTA
248 TCTGAAAATTAATAAGTGAG-ATTTAAAAAATAAATCTGTTTA-TAAAATTA-TTCAAATAGTTA
* * * *
50429 TA-ACTATTTGAACAATTATTTATTTCAAATCATTATGACCATTTG
310 -AGA--ATTTGAATAATTATCTATTTCAAATCATTATAAAC-TTTG
* * * * *
50474 TATTGTCATAAAATAATTATTTATGTTTATAC-AGTCTTATTCAAAATAAAGTAATACTAATTTA
1 TTTTGTCATAAAATAATTGTTT-TGTTCATACAAG-CTTATTCGAAATAAAATAATACTAATTTA
* * ** * ** * * *
50538 TCAATATTT-TGAAATTAATAAGTAATAGATTTAAAAAATGAATTAATTGACCTG-ACCAGTGT-
64 TTAAAATTTCAAAAATTAATAA--AA-A-ATTTAAAAAATAAATTTGTTTA-CTGAATCAAT-TC
* * *
50600 AAATAGTTATGATTATTTAAATAATTATCTATTTCAAATCATTATGACATTTTGTTTTATCATAA
123 AAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATAACATTTTGTTTTATCATAA
*
50665 AATAATTATTTC
188 AACAATTATTTC
50677 ATCACAAAAC
Statistics
Matches: 1550, Mismatches: 338, Indels: 212
0.74 0.16 0.10
Matches are distributed among these distances:
349 5 0.00
350 115 0.07
351 8 0.01
352 5 0.00
353 4 0.00
354 86 0.06
355 55 0.04
356 290 0.19
357 56 0.04
358 26 0.02
359 227 0.15
360 181 0.12
361 136 0.09
362 200 0.13
363 72 0.05
364 78 0.05
365 3 0.00
366 3 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (351 bp):
TTTTGTCATAAAATAATTGTTTTGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATT
AAAATTTCAAAAATTAATAAAAAATTTAAAAAATAAATTTGTTTACTGAATCAATTCAAATAGTT
ATGACTATTTAAACAATTATCTATTTCAAATCATTATAACATTTTGTTTTATCATAAAACAATTA
TTTCTATTCATACAAGTTTATTCGAAATAAAATAATAGTAATTTATTAATATTCTGAAAATTAAT
AAGTGAGATTTAAAAAATAAATCTGTTTATAAAATTATTCAAATAGTTAAGAATTTGAATAATTA
TCTATTTCAAATCATTATAAACTTTG
Found at i:50829 original size:16 final size:17
Alignment explanation
Indices: 50797--50829 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50787 AACAAGTGCA
50797 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
50815 AATAATTAT-CTATTT
1 AATAATTATACTATTT
50830 CTAATCGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:51595 original size:49 final size:49
Alignment explanation
Indices: 51497--51597 Score: 127
Period size: 49 Copynumber: 2.1 Consensus size: 49
51487 CGTTATTTAA
* *
51497 TATAATTATGTTACATAATTATATAAATTTATAAGCATTTATATTAATT
1 TATAATTATGTTACATAATTATATAAATTTATAAGCATCTATATAAATT
*
51546 TATAATTAT-TTA-TTAATTATGAATAAATTTATAAGCAATCTA-ATAAATT
1 TATAATTATGTTACATAATTAT--ATAAATTTATAAGC-ATCTATATAAATT
51595 TAT
1 TAT
51598 TCATAATTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
47 7 0.15
48 3 0.07
49 32 0.70
50 4 0.09
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (49 bp):
TATAATTATGTTACATAATTATATAAATTTATAAGCATCTATATAAATT
Found at i:52042 original size:26 final size:26
Alignment explanation
Indices: 52003--52071 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 26
51993 TAAATACTTA
*
52003 TAATTTATTATTAATTATCTTAA-TAT
1 TAATTT-TAATTAATTATCTTAATTAT
* * *
52029 TGATTTTAATTTAAATATTTTAATTAT
1 TAATTTTAA-TTAATTATCTTAATTAT
*
52056 TAATTTTTATTAATTA
1 TAATTTTAATTAATTA
52072 ATATATATCT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
25 2 0.06
26 22 0.65
27 10 0.29
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (26 bp):
TAATTTTAATTAATTATCTTAATTAT
Found at i:53005 original size:181 final size:180
Alignment explanation
Indices: 52701--53324 Score: 788
Period size: 181 Copynumber: 3.5 Consensus size: 180
52691 TATGATAAAA
* ** * * * * *
52701 AAACAATTGTTATATGACCAAACAAATGGT-AGTATTGATTTCAAATAGATAATTGTTGAAATAG
1 AAACAATTGTTTTATGATAAAACAAAAGATCA-TAATGATTTTAAATAGATAATTGTTCAAATAG
* * * *
52765 CCATAATTATTTGAACTAATTCGGTCAACAAAATCATTTTTTAAATCACTTACTTATTAATTTTT
65 CCATAACTATTTAAACTAATTAGGTAAAC-AAATCATTTTTTAAATCACTTACTTATTAATTTTT
52830 GAAATATTAAGAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAACTG
129 GAAATATTAAGAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAACTG
* *
52882 AAACAATTGTTTTATGATAAAACAAAAGATCATAATGATTTTAAATAGATAATTGTTGAAATGGC
1 AAACAATTGTTTTATGATAAAACAAAAGATCATAATGATTTTAAATAGATAATTGTTCAAATAGC
* * *
52947 CATAATTATTTGAACTAATTTGGTAAACAGAATCATTTTTTAAATCACTTACTTATTAATTTTTG
66 CATAACTATTTAAACTAATTAGGTAAACA-AATCATTTTTTAAATCACTTACTTATTAATTTTTG
* * *
53012 GAATCTTAATAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAACTG
130 AAATATTAAGAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAACTG
* *
53063 AAACAATTGTTTTATGATAAAATAAAAGATCATAATGATTTTAAATAGATAATTGTTCAAATAGT
1 AAACAATTGTTTTATGATAAAACAAAAGATCATAATGATTTTAAATAGATAATTGTTCAAATAGC
* ** * * * *
53128 CATAACTATTTAAATTTGTTAAGTAAACAAATTAATTTTGTTAAA-CTCTTGCTTATTAATTTTT
66 CATAACTATTTAAACTAATTAGGTAAACAAA-TCATTTT-TTAAATCACTTACTTATTAATTTTT
** * * *
53192 GAAATATTAAGAAATTGGTATTATTTTATTT-TAGATAAGCTTTTATGAACTA
129 GAAATATTAAGAAATTACTATTATTTTATTTCGA-ATAAGCTTGTATGAACTG
* * * * * *
53244 AAACAAATT-TTTTTTGTTAAAACAAAAGGTCATAACGATTTTAAATAAATAATTGTTCAAATGG
1 AAAC-AATTGTTTTATGATAAAACAAAAGATCATAATGATTTTAAATAGATAATTGTTCAAATAG
*
53308 TCATAACTATTTAAACT
65 CCATAACTATTTAAACT
53325 TGATTAGTAA
Statistics
Matches: 394, Mismatches: 43, Indels: 12
0.88 0.10 0.03
Matches are distributed among these distances:
180 4 0.01
181 380 0.96
182 10 0.03
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (180 bp):
AAACAATTGTTTTATGATAAAACAAAAGATCATAATGATTTTAAATAGATAATTGTTCAAATAGC
CATAACTATTTAAACTAATTAGGTAAACAAATCATTTTTTAAATCACTTACTTATTAATTTTTGA
AATATTAAGAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAACTG
Found at i:53401 original size:7 final size:7
Alignment explanation
Indices: 53391--53427 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
53381 TAATAATTAA
53391 AAATTTT
1 AAATTTT
53398 AAATTTT
1 AAATTTT
53405 AAATTTT
1 AAATTTT
53412 AAATATTT
1 AAAT-TTT
*
53420 AATTTTT
1 AAATTTT
53427 A
1 A
53428 TTATTTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
7 22 0.79
8 6 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AAATTTT
Found at i:53906 original size:23 final size:23
Alignment explanation
Indices: 53876--53919 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
53866 TAGTCATGTC
53876 CATTTGAATAATTATTTATTTTT
1 CATTTGAATAATTATTTATTTTT
53899 CATTTGAATAATTATTTATTT
1 CATTTGAATAATTATTTATTT
53920 CAATTCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (23 bp):
CATTTGAATAATTATTTATTTTT
Found at i:54328 original size:175 final size:174
Alignment explanation
Indices: 53900--54329 Score: 420
Period size: 175 Copynumber: 2.4 Consensus size: 174
53890 TTTATTTTTC
* * * * *
53900 ATTTGAATAATTATTTATTTCAATTCATTATGACCTTTTATTTTTTCATAAAACAATTCTTTTTG
1 ATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAATT-GTTTT-
** * ** * *
53965 TTCATGCAAAATTATTCAAAATAAAAAAATACTGATTTATTAACATTATGAAAATTAATAAGAGA
64 AACATACAAGCTTATGCAAAATAAAAAAATACTGATTTATTAACATTATAAAAATTAATAAGAGA
* * * *
54030 TTTGAAAAAATAAATATGTTTACTAAACAAGTTCAAATAGTATAATT
129 TTTGAAAAAATAAATATGCTTACCAAACAAGATCAAATAG-ATAATG
* * ** * *
54077 ATTTGAACAATTATCTATTTAAAATTGTTATGAACTTTTGTTTTATCATAAAACAATTGTTTTAG
1 ATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAATTGTTTTAA
* * * *
54142 TATAAAAGCTTATGCAAAATAAAATAATACT-ACTTTATTAATATT-TCAAAAATTAATAAGAGA
66 CATACAAGCTTATGCAAAATAAAAAAATACTGA-TTTATTAACATTAT-AAAAATTAATAAGAGA
** * *
54205 TTT-AAAAAATAAATCA-GCTTACCAAATTAGATCACATA-ATTATG
129 TTTGAAAAAATAAAT-ATGCTTACCAAACAAGATCAAATAGATAATG
* * * * * *
54249 GTCTTGAATAATTATGTATTTCAAATCATTATTACCTTTCGTTTTGTAATAAAACAATTGTTTTC
1 AT-TTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAATTGTTTT-
54314 CAACATACAAGCTTAT
64 -AACATACAAGCTTAT
54330 TAAATAAAAT
Statistics
Matches: 204, Mismatches: 43, Indels: 14
0.78 0.16 0.05
Matches are distributed among these distances:
172 5 0.02
173 51 0.25
174 29 0.14
175 66 0.32
176 4 0.02
177 49 0.24
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.40
Consensus pattern (174 bp):
ATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAATTGTTTTAA
CATACAAGCTTATGCAAAATAAAAAAATACTGATTTATTAACATTATAAAAATTAATAAGAGATT
TGAAAAAATAAATATGCTTACCAAACAAGATCAAATAGATAATG
Found at i:54383 original size:65 final size:67
Alignment explanation
Indices: 54277--54406 Score: 212
Period size: 65 Copynumber: 2.0 Consensus size: 67
54267 TTTCAAATCA
54277 TTATTACCTTTCGTTTTGTAATAAAACAATTGTTTTCCAACATACAAGCTTA-TT-AAATAAAAT
1 TTATTACCTTTCGTTTTGTAATAAAACAATTGTTTTCCAACATACAAGCTTATTTGAAATAAAAT
54340 TG
66 TG
* *
54342 TTATTACCTTTCTTTTTGTCATAAAACAATTGCTTTT-CAACATACAAGCTTATTTGAAATAAAA
1 TTATTACCTTTCGTTTTGTAATAAAACAATTG-TTTTCCAACATACAAGCTTATTTGAAATAAAA
54406 T
65 T
54407 AATACTAATT
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
65 45 0.75
66 6 0.10
67 9 0.15
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.42
Consensus pattern (67 bp):
TTATTACCTTTCGTTTTGTAATAAAACAATTGTTTTCCAACATACAAGCTTATTTGAAATAAAAT
TG
Found at i:54591 original size:31 final size:31
Alignment explanation
Indices: 54556--54619 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
54546 AAAAAAAGCC
*
54556 ATATAGATAATAATTATGATTTATAAATCTA
1 ATATAGATAATAATTATAATTTATAAATCTA
54587 ATATAGATAATAATTATAATTTATAAATCTA
1 ATATAGATAATAATTATAATTTATAAATCTA
54618 AT
1 AT
54620 TGGTTTTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (31 bp):
ATATAGATAATAATTATAATTTATAAATCTA
Found at i:56461 original size:181 final size:176
Alignment explanation
Indices: 55953--57702 Score: 765
Period size: 181 Copynumber: 9.6 Consensus size: 176
55943 TAGATAATTG
* ** * *
55953 TTATGACTTTTTGTTTTGTCAAAAAAACAATTGTTTCTATTCAACAAGCTTATTCGGATTAAAAA
1 TTATGACTTTTTGTTTTGTC--AAAAACAATTGTTTCTATTCAAAAAGCTTATTTAGAATAAAAT
* * * * *
56018 AATATTAATTTATTAATATTTC-GATAATTAATAAGTAAAAGATTTTAAAAAATAAATATATTTA
64 AATATTAATTTATTAATA-TTCAAAAAATTAATAAATAAAAGA--TT-AAAAA-AAATTTGTTTA
** * * * * *
56082 TTGAAG-AAGTTCAAATAG-TCTGACTAGTTGAATAATTATCTATTTCTAATCA
124 -CCAAGCAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
* * * * * *
56134 TTATAACATATTGTTTTGTAATAAAACAATTGTTTC-AGTT-AATATAA-ATTATTTAAAATAAA
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTA-TTCAA-A-AAGCTTATTTAGAATAAA
* * * * *
56196 ATAATACTAATTTATTAATATTTC-AAAAATGAATGAGTAAGAGAATTAAAAAAATGAATTTGTT
62 ATAATATTAATTTATTAATA-TTCAAAAAATTAATAAATAAAAG-ATT-AAAAAA--AATTTGTT
* * ** * *
56260 TACTGAA--AAATTTTAATAGTTATGACTATCTAAACAATTATCTATTTTAACA-CA
122 TAC-CAAGCAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAA-ATCA
* * *
56314 TTATGACTTTTTGTTTTGTCAAAAAGCAATTGAATT-TATTCAGGAAAGCTTATTTTGAATAAAA
1 TTATGACTTTTTGTTTTGTCAAAAA-CAATTG-TTTCTATTCA-AAAAGCTTATTTAGAATAAAA
* * * * *
56378 TAATATAAATTTATTAATATTCAAAAAATTCATAAATAATAA-TTTAAACAATAAATTTATTTTT
63 TAATATTAATTTATTAATATTCAAAAAATTAATAAATAA-AAGATTAAA-AA-AAATTT-GTTTA
* * * * * **
56442 CTGAA-CATGTTTAAATAGTTATGAATATTTAAATAATTATCTATTTCAAATTG
124 C-CAAGCAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
* * * *
56495 TTATGACTATTTGTTTTGTGATAAATCAATTGTTTCTATTCATACAAGCTTATTTAGAATAAAAT
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTATTCA-AAAAGCTTATTTAGAATAAAAT
* * *
56560 AATATTAATTTATTAAAATTTAAAAAATTAATAAGTAAAAGATTAAAAAAAATTTGTTTACCAAG
64 AATATTAATTTATTAATATTCAAAAAATTAATAAATAAAAGATTAAAAAAAATTTGTTTACCAAG
* * *
56625 CAAGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAAATCA
129 CAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
* * * *
56673 TTATGA-TCTTTTCTTTGGTCATAAAACAATTGTTTCTATTCATAAAAGTTTA-TTCGAAATAAA
1 TTATGACT-TTTTGTTTTGTCA-AAAACAATTGTTTCTATTCA-AAAAGCTTATTTAG-AATAAA
* * * *** * * *
56736 ATAATATTAATTTATTAATATTCTAACAATTAATAAGTTGGAGATTTAAAAAATAAATCTATTGA
62 ATAATATTAATTTATTAATATTCAAAAAATTAATAAATAAAAGA-TT-AAAAA-AAATTTGTTTA
* * * * * * * *
56801 GCAAACAAGTTCAAATAGTCATGTCCATTTGAACTATTATCTATTTCAAATCG
124 CCAAGCAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
* * *
56854 TTATGACATTTTGTTTTGTTGTAAAATAATACCAATGATTTAGAATAATTGGTATTCAGGCAAAA
1 TTATGAC-TTTT-TGTT-TTGT-CAA-AA-A-C-A--A-TT-G--T--TT-CTATTCA---AAAA
* * * *
56919 --TTATTCAAAATAAAATGATATTAATTTATTACTATTTC-AAAAA-T--T-AAT-AAAGATTTA
46 GCTTATTTAGAATAAAATAATATTAATTTATTAATA-TTCAAAAAATTAATAAATAAAAGA-TTA
* *** ** * *
56976 AAAATAAATGTGTTTGTTGAA-TTAGTTTAAATAGTTAAGACTA-TTAGAACAATTATCTATTTC
109 AAAA-AAATTTGTTT-ACCAAGCAAGTTCAAATAGTTATGACTATTTA-AACAATTATCTATTTC
* *
57039 AACTCG
171 AAATCA
* * * * * * * ** *
57045 TTCTGAGTTTTTGTTTAGTCATAAAATAATTGTTTC-AGCTCATACATGCCAATTT-GAAATATA
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTA-TTCA-AAAAGCTTATTTAG-AATAAA
* * * ** ** *
57108 ATAATACTAATTTATTAACATTTAAAAAATTAATAAGCAAGAA-ATTAAAAAACATAAATAAGGT
62 ATAATATTAATTTATTAATATTCAAAAAATTAATAAATAA-AAGATT--AAAA-A-AAATTTGTT
* * * * * *
57172 TACTGAA-CAAGTTAAAATTGTTATGACTATTTGAACAATTATATATTTAAAATCA
122 TAC-CAAGCAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
* * * *
57227 TTATGACCTTTTATTTTATCATAAAACAATTGTTTC-ATTGCATAAAAGCTTA-TTCGAAATAAA
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTATT-CA-AAAAGCTTATTTAG-AATAAA
* * * * * * *
57290 ATAATATT-ACTTACTAATATTTC-AAAAATTGATAAGTTAGAGATTTAAAAAATAAATTAGTTT
62 ATAATATTAATTTATTAATA-TTCAAAAAATTAATAAATAAAAGA-TT-AAAAA-AAATTTGTTT
* ** * * * *
57353 ATCAAATTAA-TTCAAATAATTA-CAGCCATTTAAATAATTATCTATTTCAAATCA
123 A-CCAAGCAAGTTCAAATAGTTATGA-CTATTTAAACAATTATCTATTTCAAATCA
* * * * * * * * *
57407 TTATGAAC-TTTTGTTTCGTTACAAACCAATTGTTTTTTTATCATACAAGCCTATTCAGATTAAA
1 TTATG-ACTTTTTGTTTTGTCA-AAAACAATTGTTTCTAT-TCA-AAAAGCTTATTTAGAATAAA
* * * * * ** *
57471 ATAAAACTAATTTACTAATACTTC-AAAAATTAATGAGTAGGAGATTTAAAAAATAAATCTGTTT
62 ATAATATTAATTTATTAATA-TTCAAAAAATTAATAAATAAAAGA-TT-AAAAA-AAATTTGTTT
* * * * *
57535 ACTGAACCAA-TTCAAATAGTTATGAC--TTTGAACAATTATATATTTCAAATTA
123 AC-CAAGCAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
* * * * * * * * * * * *
57587 TTATAACCTTTTATTATCTCATAAAATAATTATTTATATTCATACAAGTTTATTAAAAATAAAAT
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTATTCA-AAAAGCTTATTTAGAATAAAAT
* * * * * *
57652 AATACT-ATTGTAATAATATTCTAAAAATTAATAACTAAGAGATTTAAAAAA
64 AATATTAATT-TATTAATATTCAAAAAATTAATAAATAAAAGATTAAAAAAA
57703 TTAAATAAAT
Statistics
Matches: 1209, Mismatches: 269, Indels: 187
0.73 0.16 0.11
Matches are distributed among these distances:
173 2 0.00
174 3 0.00
175 32 0.03
176 5 0.00
177 10 0.01
178 140 0.12
179 97 0.08
180 274 0.23
181 316 0.26
182 178 0.15
183 7 0.01
184 5 0.00
185 3 0.00
186 2 0.00
187 4 0.00
188 5 0.00
189 3 0.00
190 7 0.01
191 55 0.05
192 9 0.01
193 2 0.00
194 2 0.00
196 3 0.00
197 37 0.03
198 4 0.00
199 4 0.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (176 bp):
TTATGACTTTTTGTTTTGTCAAAAACAATTGTTTCTATTCAAAAAGCTTATTTAGAATAAAATAA
TATTAATTTATTAATATTCAAAAAATTAATAAATAAAAGATTAAAAAAAATTTGTTTACCAAGCA
AGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
Found at i:56819 original size:359 final size:356
Alignment explanation
Indices: 55953--57584 Score: 959
Period size: 359 Copynumber: 4.5 Consensus size: 356
55943 TAGATAATTG
* * * * *
55953 TTATGACTTTTTGTTTTGTCAAAAAAACAATTGTTTCTATTCAACAAGCTTATTCGGATTAAAAA
1 TTATGACTTTTTCTTTGGTC--AAAAACAATTGTTTCTATTCAAAAAGCTTATTC-GAATAAAAT
* *
56018 AATATTAATTTATTAATATT-TCGATAATTAATAAGTAAAAGATTTTAAAAAATAAATATATTTA
63 AATATTAATTTATTAATATTCT-AAAAATTAATAAGTAAAAGA-TTTAAAAAATAAATATATTTA
* * * * * * * *
56082 TTGAAGAAGTTCAAATAG-TCTGACTAGTTGAATAATTATCTATTTCTAATCATTATAACATATT
126 TCGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGACAT-TT
*
56146 GTTTTGTAATAAAACAATTGTTTCAGTTAATATAAATTATTTAAAATAAAATAATACTAATTTAT
190 GTTTTGTAATAAAACAATTGTTTCAGTTAATACAAATTATTTAAAATAAAATAATACTAATTTAT
* * * * * **
56211 TAATATTTCAAAAATGAATGAGTAAGAGAATTAAAAAAATGAATTTGTTTACTGAAAAATTTTAA
255 TAAAATTTAAAAAATGAATAAGTAAAAGAATTAAAAAAA-GAATTTGTTTACTCAAAAATTCAAA
* *
56276 TAGTTATGACTATCTAAACAATTATCTATTTTAACACA
319 TAGTTATGACTATCTAAACAAATATCTATTTCAACACA
* * * * *
56314 TTATGACTTTTTGTTTTGTCAAAAAGCAATTGAATT-TATTCAGGAAAGCTTATTTTGAATAAAA
1 TTATGACTTTTTCTTTGGTCAAAAA-CAATTG-TTTCTATTCA-AAAAGCTTA-TTCGAATAAAA
* * * * * * * *
56378 TAATATAAATTTATTAATATTCAAAAAATTCATAAATAATA-ATTTAAACAATAAATTTATTTTT
62 TAATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTAT
* * * *
56442 CTGAACATGTTTAAATAGTTATGAATATTTAAATAATTATCTATTTCAAATTGTTATGACTATTT
127 C-GAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGAC-ATTT
* * * * * *
56507 GTTTTGTGATAAATCAATTGTTTCTA-TTCATACAAGCTTATTTAGAATAAAATAATATTAATTT
190 GTTTTGTAATAAAACAATTGTTTC-AGTTAATACAA-ATTATTTAAAATAAAATAATACTAATTT
* *
56571 ATTAAAATTTAAAAAATTAATAAGTAAAAG-ATT-AAAAAA-AATTTGTTTAC-CAAGCAAGTTC
253 ATTAAAATTTAAAAAATGAATAAGTAAAAGAATTAAAAAAAGAATTTGTTTACTCAA--AAATTC
* * *
56632 AAATAGTTATGACTATTTGAACAAATATTTATTTCAA-ATCA
316 AAATAGTTATGACTATCTAAACAAATATCTATTTCAACA-CA
*
56673 TTATGA-TCTTTTCTTTGGTCATAAAACAATTGTTTCTATTCATAAAAGTTTATTCGAAATAAAA
1 TTATGACT-TTTTCTTTGGTCA-AAAACAATTGTTTCTATTCA-AAAAGCTTATTCG-AATAAAA
* *** * * *
56737 TAATATTAATTTATTAATATTCTAACAATTAATAAGTTGGAGATTTAAAAAATAAATCTATTGAG
62 TAATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTAT
* * * * *
56802 CAAACAAGTTCAAATAGTCATGTCCATTTGAACT-ATTATCTATTTCAAATCGTTATGACATTTT
127 CGAACAAGTTCAAATAGTTATGACTATTT-AAATAATTATCTATTTCAAATCGTTATGACA-TTT
* * *
56866 GTTTTGTTGTAAAATAATACCAA-TGATTT-AGAATAATTGGTATTCAGGCAAAATTATTCAAAA
190 G--TT-TTGT--AATAA-AACAATTG-TTTCAG------T--TAAT-A--C-AAATTATTTAAAA
* * ** * * * *
56929 TAAAATGATATTAATTTATTACTATTTCAAAAAT---TAA-T-AAAGATTTAAAAATA-AATGTG
236 TAAAATAATACTAATTTATTAAAATTTAAAAAATGAATAAGTAAAAGAATTAAAAAAAGAATTTG
** * * * * * * * *
56988 TTTGTTGAATTAGTTTAAATAGTTAAGACTAT-TAGAACAATTATCTATTTCAACTCG
301 TTTACTCAA-AAATTCAAATAGTTATGACTATCTA-AACAAATATCTATTTCAACACA
* * * * * * * * ** * *
57045 TTCTGAGTTTTTGTTTAGTCATAAAATAATTGTTTC-AGCTCATACATGCCAATTTGAAATATAA
1 TTATGACTTTTTCTTTGGTCA-AAAACAATTGTTTCTA-TTCA-AAAAGCTTATTCG-AATAAAA
* * * * *
57109 TAATACTAATTTATTAACATT-TAAAAAATTAATAAGCAAGAA-ATTAAAAAACATAAATA-AGG
62 TAATATTAATTTATTAATATTCT-AAAAATTAATAAGTAA-AAGATTTAAAAA-ATAAATATA-T
* * * * * * *
57171 TTA-CTGAACAAGTTAAAATTGTTATGACTATTTGAACAATTATATATTTAAAATCATTATGACC
123 TTATC-GAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGA-C
* * * * * **
57235 TTTTATTTTATCATAAAACAATTGTTTCA-TTGCATA-AAAGCTTATTCGAAATAAAATAATA-T
186 ATTTGTTTTGTAATAAAACAATTGTTTCAGTT-AATACAAA--TTATTTAAAATAAAATAATACT
* * * * * * * * *
57297 TACTTACTAATATTTCAAAAATTG-ATAAGTTAGAGATTTAAAAAATA-AATTAGTTTA-TCAAA
248 AATTTATTAAAATTT-AAAAAATGAATAAGTAAAAGAATTAAAAAA-AGAATTTGTTTACTCAAA
* * * * * *
57359 TTAATTCAAATAATTA-CAGCCATTTAAATAATTATCTATTTCAA-ATCA
311 --AATTCAAATAGTTATGA-CTATCTAAACAAATATCTATTTCAACA-CA
* * * * * * * * *
57407 TTATGAAC-TTTTGTTTCGTTACAAACCAATTGTTTTTTTATCATACAAGCCTATTCAGATTAAA
1 TTATG-ACTTTTTCTTTGGTCA-AAAACAATTGTTTCTAT-TCA-AAAAGCTTATTC-GAATAAA
* * * * ** * *
57471 ATAAAACTAATTTACTAATACTTC-AAAAATTAATGAGTAGGAGATTTAAAAAATAAATCTGTTT
61 ATAATATTAATTTATTAATA-TTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTT
* * *
57535 A-CTGAACCAA-TTCAAATAGTTATGAC--TTTGAACAATTATATATTTCAAAT
125 ATC-GAA-CAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAAT
57585 TATTATAACC
Statistics
Matches: 994, Mismatches: 198, Indels: 159
0.74 0.15 0.12
Matches are distributed among these distances:
355 3 0.00
356 12 0.01
357 25 0.03
358 19 0.02
359 191 0.19
360 83 0.08
361 154 0.15
362 154 0.15
363 62 0.06
364 9 0.01
365 7 0.01
367 7 0.01
368 7 0.01
370 8 0.01
371 8 0.01
372 144 0.14
373 59 0.06
374 1 0.00
375 39 0.04
376 2 0.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (356 bp):
TTATGACTTTTTCTTTGGTCAAAAACAATTGTTTCTATTCAAAAAGCTTATTCGAATAAAATAAT
ATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTATCGAA
CAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGACATTTGTTTTG
TAATAAAACAATTGTTTCAGTTAATACAAATTATTTAAAATAAAATAATACTAATTTATTAAAAT
TTAAAAAATGAATAAGTAAAAGAATTAAAAAAAGAATTTGTTTACTCAAAAATTCAAATAGTTAT
GACTATCTAAACAAATATCTATTTCAACACA
Found at i:57295 original size:182 final size:181
Alignment explanation
Indices: 56920--57710 Score: 551
Period size: 182 Copynumber: 4.4 Consensus size: 181
56910 CAGGCAAAAT
* * * * * *
56920 TATTCAAAATAAAATGATATTAATTTATTACTATTTCAAAAATTAAT-A--AAG--ATT-TAAAA
1 TATTCGAAATAAAATAATACTAATTTACTAATATTTCAAAAATTAATAAGCAAGAAATTAAAAAA
** ** ** * * * * *
56979 ATAAATGTGTTTGTTGAATTAGTTTAAATAGTTAAGACTATTAGAACAATTATCTATTTCAACTC
66 ATAAATAAGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATC
* * * * ** *
57044 GTTCTGA-GTTTT-TGTTTAGTCATAAAATAATTGTTTCAGCTCATACATGCC
131 ATTATGACCTTTTAT-TTTA-TCATAAAACAATTGTTTCATTTCATACAAGCC
* * * * * *
57095 AATTTGAAATATAATAATACTAATTTATTAACATTTAAAAAATTAATAAGCAAGAAATTAAAAAA
1 TATTCGAAATAAAATAATACTAATTTACTAATATTTCAAAAATTAATAAGCAAGAAATTAAAAAA
* * * *
57160 CATAAATAAGGTTACTGAACAAGTTAAAATTGTTATGACTATTTGAACAATTATATATTTAAAAT
66 -ATAAATAAGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAAT
* * *
57225 CATTATGACCTTTTATTTTATCATAAAACAATTGTTTCATTGCATAAAAGCT
130 CATTATGACCTTTTATTTTATCATAAAACAATTGTTTCATTTCATACAAGCC
* * * ** * *
57277 TATTCGAAATAAAATAATA-TTACTTACTAATATTTCAAAAATTGATAAGTTAGAGATTTAAAAA
1 TATTCGAAATAAAATAATACTAATTTACTAATATTTCAAAAATTAATAAGCAAGAAATTAAAAAA
* * * * * * * * *
57341 ATAAATTAGTTTA-TCAA-ATTAATTCAAATAATTA-CAGCCATTTAAATAATTATCTATTTCAA
66 ATAAATAAGTTTACTGAACA--AGTTCAAATAGTTATGA-CTATTTGAACAATTATATATTTCAA
* * ** * * * **
57403 ATCATTATGAACTTTTGTTTCGTTACAAACCAATTGTTTTTTTATCATACAAGCC
128 ATCATTATGACCTTTTATTTTATCATAAAACAATTGTTTCATT-TCATACAAGCC
* * * * * * * *
57458 TATTC-AGATTAAAATAAAACTAATTTACTAATACTTCAAAAATTAATGAGTAGGAGATTTAAAA
1 TATTCGA-AATAAAATAATACTAATTTACTAATATTTCAAAAATTAATAAGCAAGAAATTAAAAA
**
57522 AATAAATCTGTTTACTGAACCAA-TTCAAATAGTTATGAC--TTTGAACAATTATATATTTCAAA
65 AATAAATAAGTTTACTGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAA
* * * * * * **
57584 TTATTATAACCTTTTATTATCTCATAAAATAATTATTT-ATATTCATACAAGTT
129 TCATTATGACCTTTTATTTTATCATAAAACAATTGTTTCAT-TTCATACAAGCC
** * *
57637 TATTAAAAATAAAATAATACT-ATTGTAATAATA-TTCTAAAAATTAATAA-CTAAGAGATTTAA
1 TATTCGAAATAAAATAATACTAATT-TACTAATATTTC-AAAAATTAATAAGC-AAGA-AATTAA
*
57699 AAAATTAAATAA
62 AAAAATAAATAA
57711 ATTAGAATAT
Statistics
Matches: 474, Mismatches: 117, Indels: 45
0.75 0.18 0.07
Matches are distributed among these distances:
175 38 0.08
176 1 0.00
178 10 0.02
179 51 0.11
180 139 0.29
181 62 0.13
182 158 0.33
183 13 0.03
184 1 0.00
185 1 0.00
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (181 bp):
TATTCGAAATAAAATAATACTAATTTACTAATATTTCAAAAATTAATAAGCAAGAAATTAAAAAA
ATAAATAAGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATC
ATTATGACCTTTTATTTTATCATAAAACAATTGTTTCATTTCATACAAGCC
Found at i:57898 original size:22 final size:22
Alignment explanation
Indices: 57879--57949 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 22
57869 GATTTTTACT
*
57879 TAATTATTATTATATATTTATA
1 TAATTAATATTATATATTTATA
*
57901 TAATTAATATTATAT-TATAT-
1 TAATTAATATTATATATTTATA
57921 TATATTAAT-TTATA-ATATTA-A
1 TA-ATTAATATTATATAT-TTATA
57942 TAATTAAT
1 TAATTAAT
57950 TAAAAACCAA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
20 14 0.33
21 14 0.33
22 14 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATTAATATTATATATTTATA
Found at i:57911 original size:25 final size:26
Alignment explanation
Indices: 57878--57952 Score: 70
Period size: 25 Copynumber: 3.0 Consensus size: 26
57868 AGATTTTTAC
57878 TTAATTATTATTA-TATATT-TATATAA
1 TTAA-TATTATTATTATATTATAT-TAA
57904 TTAATATTA-TATTATATTATATTAA
1 TTAATATTATTATTATATTATATTAA
* * *
57929 TTTATAATATTAATA-ATTA-ATTAA
1 TTAATATTATTATTATATTATATTAA
57953 AAACCAATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
24 7 0.16
25 25 0.58
26 11 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
TTAATATTATTATTATATTATATTAA
Found at i:57917 original size:5 final size:5
Alignment explanation
Indices: 57881--57940 Score: 51
Period size: 5 Copynumber: 12.8 Consensus size: 5
57871 TTTTTACTTA
57881 ATTATT ATTAT A-TAT -TTAT A-TA- ATTAAT ATTAT ATTAT ATTAT ATTA-
1 ATTA-T ATTAT ATTAT ATTAT ATTAT ATT-AT ATTAT ATTAT ATTAT ATTAT
*
57928 ATT-T ATAAT ATTA
1 ATTAT ATTAT ATTA
57941 ATAATTAATT
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
3 1 0.02
4 14 0.31
5 23 0.51
6 7 0.16
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
ATTAT
Found at i:57940 original size:13 final size:14
Alignment explanation
Indices: 57905--57942 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
57895 TTTATATAAT
57905 TAATATTATATTATA
1 TAATATTA-ATTATA
*
57920 TTATATTAATT-TA
1 TAATATTAATTATA
57933 TAATATTAAT
1 TAATATTAAT
57943 AATTAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 11 0.52
14 3 0.14
15 7 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TAATATTAATTATA
Found at i:57941 original size:34 final size:33
Alignment explanation
Indices: 57878--57951 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 33
57868 AGATTTTTAC
57878 TTAATTATTATTATATATTTATATAATTAAT-A
1 TTAATTATTATTATATATTTATATAATTAATAA
57910 TTATATTA-TATTATATTAATTTATA-ATATTAATAA
1 TTA-ATTATTATTATA-T-ATTTATATA-ATTAATAA
57945 TTAATTA
1 TTAATTA
57952 AAAACCAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
32 10 0.27
33 6 0.16
34 17 0.46
35 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (33 bp):
TTAATTATTATTATATATTTATATAATTAATAA
Found at i:58075 original size:18 final size:18
Alignment explanation
Indices: 58044--58112 Score: 59
Period size: 18 Copynumber: 3.7 Consensus size: 18
58034 ATAATCTTTA
**
58044 TAATAATTCTTATAATAT
1 TAATAATTAATATAATAT
58062 TAATAATTAATATAAT-T
1 TAATAATTAATATAATAT
* *
58079 TATTCAATTAAACAATAATAT
1 TAAT-AATT-AA-TATAATAT
*
58100 TAATAATTTATAT
1 TAATAATTAATAT
58113 TCTTATTGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
18 20 0.50
19 3 0.08
20 9 0.22
21 4 0.10
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATAATTAATATAATAT
Found at i:59517 original size:25 final size:25
Alignment explanation
Indices: 59478--59526 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
59468 ATATACATTT
59478 AGTTTTACTCTTAG-TTTTCCACAC
1 AGTTTTACTCTTAGTTTTTCCACAC
*
59502 AGTTTTATTTCTTAGTTTTTCCACA
1 AGTTTTA-CTCTTAGTTTTTCCACA
59527 TGGTATGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 6 0.27
26 9 0.41
ACGTcount: A:0.20, C:0.20, G:0.08, T:0.51
Consensus pattern (25 bp):
AGTTTTACTCTTAGTTTTTCCACAC
Found at i:59906 original size:279 final size:278
Alignment explanation
Indices: 59443--59987 Score: 948
Period size: 279 Copynumber: 2.0 Consensus size: 278
59433 GATAATATTG
* * *
59443 ATAATTCTTTATGAGTAGTTTTTCAATATACATTTAGTTTTACTCTTAGTTTTCCACACAGTTTT
1 ATAATTCTTTATGAGCAATTTTTCAATATACATTTAGTTTTACTCTTAATTTTCCACACAGTTTT
*
59508 ATTTCTTAGTTTTTCCACATGGTATGAGAGCTAGGACTTTCTTTCTATTGCCCTTTCCTAATTTG
66 ATTTCTTAGTTTTTCCACATGGTATAAGAGCTAGGACTTTCTTTCTATTGCCCTTTCCTAATTTG
* *
59573 TCACATGGAGGGCTTCTTTCCTCTTTACCTACACATGATGGGGGCCTATTAAAAGTTTAAATAAC
131 TCACATGGAAGGCTTCTTTCCTCTTCACCTACACATGATGGGGGCCTATTAAAAGTTTAAATAAC
59638 TAATATTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTATA
196 TAA-ATTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTATA
59703 CAAGCACATAATTGCTTGT
260 CAAGCACATAATTGCTTGT
*
59722 ATAATTCTTTATGAGCAATTTTTCAATATACATTTAGTTTTACTCTTAATTTTCCACATAGTTTT
1 ATAATTCTTTATGAGCAATTTTTCAATATACATTTAGTTTTACTCTTAATTTTCCACACAGTTTT
* *
59787 ATTTCTTAGTTTTTTCACATGGTATAAGAGCTAGGACTTTCTTT-TCGTTGCCCTTTCCTAATTT
66 ATTTCTTAGTTTTTCCACATGGTATAAGAGCTAGGACTTTCTTTCT-ATTGCCCTTTCCTAATTT
* * * *
59851 GTCACGTGGAAGGCTTCTTTCCTCTTCACCTACACCTGATGGGGGCTTGTTAAAAGTTTAAATAA
130 GTCACATGGAAGGCTTCTTTCCTCTTCACCTACACATGATGGGGGCCTATTAAAAGTTTAAATAA
59916 CTAAATTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTATA
195 CTAAATTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTATA
59981 CAAGCAC
260 CAAGCAC
59988 CTTAGGTTTA
Statistics
Matches: 252, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
278 69 0.27
279 183 0.73
ACGTcount: A:0.29, C:0.15, G:0.11, T:0.45
Consensus pattern (278 bp):
ATAATTCTTTATGAGCAATTTTTCAATATACATTTAGTTTTACTCTTAATTTTCCACACAGTTTT
ATTTCTTAGTTTTTCCACATGGTATAAGAGCTAGGACTTTCTTTCTATTGCCCTTTCCTAATTTG
TCACATGGAAGGCTTCTTTCCTCTTCACCTACACATGATGGGGGCCTATTAAAAGTTTAAATAAC
TAAATTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTATAC
AAGCACATAATTGCTTGT
Found at i:60112 original size:22 final size:22
Alignment explanation
Indices: 60087--60129 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
60077 ATTTTTTGTC
* *
60087 CTTAATTCTAGGGATATAAATA
1 CTTAATTCTAGAGATACAAATA
60109 CTTAATTCTAGAGATACAAAT
1 CTTAATTCTAGAGATACAAAT
60130 GTAAATATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:60535 original size:31 final size:31
Alignment explanation
Indices: 60500--60564 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
60490 AATTCATATT
60500 TAATTATAATTAATTAA-ATTAT-AATAATTAA
1 TAATTATAATTAATTAATATT-TCAA-AATTAA
*
60531 TAATTCTAATTAATTAATATTTCAAAATTAA
1 TAATTATAATTAATTAATATTTCAAAATTAA
60562 TAA
1 TAA
60565 GTAAAAGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 26 0.84
32 5 0.16
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (31 bp):
TAATTATAATTAATTAATATTTCAAAATTAA
Found at i:61502 original size:25 final size:24
Alignment explanation
Indices: 61464--61510 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
61454 TTTAACAAAT
61464 TTTTTAATAATTATTATTAAATATA
1 TTTTTAATAATTA-TATTAAATATA
* * *
61489 TTTTTACTAGTTATATTTAATA
1 TTTTTAATAATTATATTAAATA
61511 CTATAATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTTTAATAATTATATTAAATATA
Found at i:61568 original size:29 final size:29
Alignment explanation
Indices: 61521--61598 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 29
61511 CTATAATATA
** *
61521 TATTAATTTTAAATATTAAATCTAATTTATT
1 TATTAA-TTTAAA-ATTAAATAAAATTTACT
*
61552 TATATAA-TTAAAATTAATTAAAATTTACT
1 TAT-TAATTTAAAATTAAATAAAATTTACT
61581 TATTAATTTAAAATTAAA
1 TATTAATTTAAAATTAAA
61599 ATAATTGTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
28 3 0.08
29 26 0.65
30 5 0.12
31 3 0.08
32 3 0.08
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (29 bp):
TATTAATTTAAAATTAAATAAAATTTACT
Found at i:61649 original size:22 final size:23
Alignment explanation
Indices: 61609--61664 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
61599 ATAATTGTTA
61609 TAATTA-AATA-ATAATCTAATT
1 TAATTATAATATATAATCTAATT
61630 TAATTATAATATATAA-CTAATT
1 TAATTATAATATATAATCTAATT
* *
61652 AAAATATAATATA
1 TAATTATAATATA
61665 AATTTTTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 21 0.68
23 4 0.13
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (23 bp):
TAATTATAATATATAATCTAATT
Found at i:61813 original size:13 final size:13
Alignment explanation
Indices: 61797--61821 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61787 AATACAAATA
61797 AATCTAATTATTT
1 AATCTAATTATTT
61810 AATCTAATTATT
1 AATCTAATTATT
61822 AATAAAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:62369 original size:14 final size:14
Alignment explanation
Indices: 62350--62379 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
62340 TTAAGAGATT
62350 ATAAATTTAGTATA
1 ATAAATTTAGTATA
*
62364 ATAAATTTATTATA
1 ATAAATTTAGTATA
62378 AT
1 AT
62380 TTAAAGTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
ATAAATTTAGTATA
Found at i:62965 original size:23 final size:21
Alignment explanation
Indices: 62912--62966 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
62902 ATAATAATAA
*
62912 ATTAATTATTATTAATTTAAT
1 ATTAAATATTATTAATTTAAT
* *
62933 A-TATAGATTATTAATTATAGAT
1 ATTAAATATTATTAATT-TA-AT
62955 ATTAAATATTAT
1 ATTAAATATTAT
62967 ATATTATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
20 12 0.46
21 3 0.12
22 3 0.12
23 8 0.31
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
ATTAAATATTATTAATTTAAT
Found at i:63599 original size:13 final size:16
Alignment explanation
Indices: 63562--63595 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
63552 TAGACAACTA
63562 AACAGTTAATAATTTT
1 AACAGTTAATAATTTT
63578 AACAGTTAATAATTTT
1 AACAGTTAATAATTTT
63594 AA
1 AA
63596 TTAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (16 bp):
AACAGTTAATAATTTT
Found at i:63646 original size:22 final size:22
Alignment explanation
Indices: 63618--63690 Score: 87
Period size: 22 Copynumber: 3.3 Consensus size: 22
63608 TATAAAATTA
* *
63618 ATTAATAGTAATTAATATTGAT
1 ATTAATAGTAAATAATATTAAT
*
63640 ATTAATAATAAATAATATTAAT
1 ATTAATAGTAAATAATATTAAT
63662 ATT--TAGTTATAATAATATTAAT
1 ATTAATAG-TA-AATAATATTAAT
63684 ATTAATA
1 ATTAATA
63691 TTATTATGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
20 2 0.05
21 2 0.05
22 37 0.86
24 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (22 bp):
ATTAATAGTAAATAATATTAAT
Found at i:63661 original size:6 final size:6
Alignment explanation
Indices: 63628--63693 Score: 61
Period size: 6 Copynumber: 11.7 Consensus size: 6
63618 ATTAATAGTA
* *
63628 ATTAAT ATTGAT ATTAAT AATAA- A-TAAT ATTAAT ATT--T AGTT-AT
1 ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT A-TTAAT
*
63672 AATAAT ATTAAT ATTAAT ATTA
1 ATTAAT ATTAAT ATTAAT ATTA
63694 TTATGTATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
4 5 0.10
5 5 0.10
6 40 0.80
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (6 bp):
ATTAAT
Found at i:63804 original size:22 final size:24
Alignment explanation
Indices: 63756--63810 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
63746 ATAATATTTT
*
63756 ATAAATATTTATAAATTATTAGTA
1 ATAAATATTTATAAATTATTAGCA
63780 ATAAATATTT-T-AATTAATTA-CA
1 ATAAATATTTATAAATT-ATTAGCA
*
63802 ATAACTATT
1 ATAAATATT
63811 ATATTGTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 13 0.46
23 5 0.18
24 10 0.36
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAAATATTTATAAATTATTAGCA
Found at i:64364 original size:181 final size:181
Alignment explanation
Indices: 64071--64447 Score: 472
Period size: 181 Copynumber: 2.1 Consensus size: 181
64061 TAATAATTTA
* * * * * * * ***
64071 AAATAGATAATTATTTATATAGCCTTAACTATTTGAATTAGTTTGGTAAACAAATTTATTTTTTA
1 AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAATTCAATAAACAAATTTATTTTTTA
* * * * * *
64136 AATCTATCAGTTATTAAATTTCATAATATTACTATATTAGTATTATTTTATTTTGAATAAGCTTG
66 AATCTATCACTTATTAAATTTCATAATATTAATAAATTAGAATTATTTTATTCTAAATAAGCTTG
* * *
64201 TATGAAGATAAATAATTGTTTTATGACAAAAC-AAAATGTTATAACGATTGG
131 TATGAAGAAAAACAATTGTTTTATGACAAAACAAAAAT-TCATAACGATTGG
*
64252 AAATATATAATTGTTCAAATAGTCATAACTATTTGAACTAATTCAATAAACAAATTTATTTTTTA
1 AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAATTCAATAAACAAATTTATTTTTTA
* * *
64317 AAT-TTTCTACTTATTAATTTTTCA-AATATTAATAAATTAGAATTATTTTATTCTAAATAGGCT
66 AATCTATC-ACTTATTAA-ATTTCATAATATTAATAAATTAGAATTATTTTATTCTAAATAAGCT
* * *
64380 TGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAATTCATAATGATTTG
129 TGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAAATTCATAACGATTGG
64433 AAATAGATAATTGTT
1 AAATAGATAATTGTT
64448 TGACCTAATT
Statistics
Matches: 166, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
180 3 0.02
181 153 0.92
182 10 0.06
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (181 bp):
AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAATTCAATAAACAAATTTATTTTTTA
AATCTATCACTTATTAAATTTCATAATATTAATAAATTAGAATTATTTTATTCTAAATAAGCTTG
TATGAAGAAAAACAATTGTTTTATGACAAAACAAAAATTCATAACGATTGG
Found at i:65266 original size:182 final size:178
Alignment explanation
Indices: 64964--65460 Score: 509
Period size: 182 Copynumber: 2.7 Consensus size: 178
64954 TAAAAATTTC
* * * *
64964 ACTTATTAATTTTTGGAACATTAATAAATTTATATTATTTTATTTGAAATAAGCTTGAATGAATA
1 ACTTATTAATTTTTGAAATATTAATAAA-TTATATTATTTTATTTCAAATAAGC-TAAATGAATA
* *** *
65029 GAACCAATTGTTTTATTACAAAACAAAAGATTGTGATGTTTTGAAATAGATAATTATT-AAGATA
64 GAAACAATTGTTTTATTACAAAACAAAAGATTACAATGATTTGAAATAGATAATTATTCAA-ATA
*
65093 GTCA-GAACTATTTGAACTTATTT-GATAAACAGATTTATTTTTTTAATTCTCTT
128 GTCATG-ACTATTTGAACTTATTTAG-TAAACAGA-TT-TTTTTTTAAATCTCTT
* *
65146 ACTTTTTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATT
1 ACTTATTAATTTTTGAAATATTAATAAATTA-TATTATTTTATTTCAAATAAGCTAA-ATGAATA
* *
65211 GAAACAATTGTTTTATTACAAAACAAAATG-TTACAATGATTTGAAGTATATAATTATTCAAATA
64 GAAACAATTGTTTTATTACAAAACAAAA-GATTACAATGATTTGAAATAGATAATTATTCAAATA
** *
65275 GTCATGACTATTTGAACTTATTTAGTAAACTTATTTTTTTTTAAATCTTTT
128 GTCATGACTATTTGAACTTATTTAGTAAACAGATTTTTTTTTAAATCTCTT
* * * * * * * ** * **
65326 ACTTATTAATTGTTGAAATATTAATAAATCAACATTATTTTAATCCGAATAAACTCGTATGGACG
1 ACTTATTAATTTTTGAAATATTAATAAAT-TATATTATTTTATTTCAAATAAGCT-AAATGAATA
* * * * * * *
65391 GAAACAATTGTTTTATGACAAAACAAAAAAAT-CATAAGAATTTGAAATAAATAATTATTTAGAT
64 GAAACAATTGTTTTATTACAAAACAAAAGATTACA-ATG-ATTTGAAATAGATAATTATTCAAAT
65455 AGTCAT
127 AGTCAT
65461 AACGATTACT
Statistics
Matches: 266, Mismatches: 38, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
179 2 0.01
180 93 0.35
181 35 0.13
182 131 0.49
183 5 0.02
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.42
Consensus pattern (178 bp):
ACTTATTAATTTTTGAAATATTAATAAATTATATTATTTTATTTCAAATAAGCTAAATGAATAGA
AACAATTGTTTTATTACAAAACAAAAGATTACAATGATTTGAAATAGATAATTATTCAAATAGTC
ATGACTATTTGAACTTATTTAGTAAACAGATTTTTTTTTAAATCTCTT
Found at i:65414 original size:180 final size:182
Alignment explanation
Indices: 65033--65459 Score: 472
Period size: 180 Copynumber: 2.4 Consensus size: 182
65023 TGAATAGAAC
*** *
65033 CAATTGTTTTATTACAAAACAAAAGATTGTGATGTTTTGAAATAGATAATTATTAAGATAGTCAG
1 CAATTGTTTTATTACAAAACAAAAGATTACAATGATTTGAAATAGATAATTATTAAGATAGTCAG
* * *
65098 AACTATTTGAACTTATTTGATAAACAGATTTATTTTTTTAATTCTCTTACTTTTTAATTTTTGAA
66 AACTATTTGAACTTATTTGATAAACAGATTTATTTTTTTAAATCTCTTACTTATTAATTGTTGAA
* ** * * * **
65163 ATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATTGAAA
131 ATATTAATAAATCAACATTATTTTAATCCAAATAAACTAACATGAACGGAAA
* *
65215 CAATTGTTTTATTACAAAACAAAATG-TTACAATGATTTGAAGTATATAATTATTCAA-ATAGTC
1 CAATTGTTTTATTACAAAACAAAA-GATTACAATGATTTGAAATAGATAATTATT-AAGATAGTC
** *
65278 ATG-ACTATTTGAACTTATTT-AGTAAACTTA-TT-TTTTTTTAAATCTTTTACTTATTAATTGT
64 A-GAACTATTTGAACTTATTTGA-TAAACAGATTTATTTTTTTAAATCTCTTACTTATTAATTGT
* *** *
65339 TGAAATATTAATAAATCAACATTATTTTAATCCGAATAAACTCGTATGGACGGAAA
127 TGAAATATTAATAAATCAACATTATTTTAATCCAAATAAACTAACATGAACGGAAA
* * * * * *
65395 CAATTGTTTTATGACAAAACAAAAAAAT-CATAAGAATTTGAAATAAATAATTATTTAGATAGTC
1 CAATTGTTTTATTACAAAACAAAAGATTACA-ATG-ATTTGAAATAGATAATTATTAAGATAGTC
65459 A
64 A
65460 TAACGATTAC
Statistics
Matches: 205, Mismatches: 32, Indels: 17
0.81 0.13 0.07
Matches are distributed among these distances:
179 2 0.01
180 95 0.46
181 28 0.14
182 76 0.37
183 4 0.02
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (182 bp):
CAATTGTTTTATTACAAAACAAAAGATTACAATGATTTGAAATAGATAATTATTAAGATAGTCAG
AACTATTTGAACTTATTTGATAAACAGATTTATTTTTTTAAATCTCTTACTTATTAATTGTTGAA
ATATTAATAAATCAACATTATTTTAATCCAAATAAACTAACATGAACGGAAA
Found at i:66024 original size:13 final size:13
Alignment explanation
Indices: 66006--66079 Score: 59
Period size: 13 Copynumber: 6.1 Consensus size: 13
65996 ATTTTAATTA
66006 ATTAATATATATT
1 ATTAATATATATT
66019 ATTAAT-TA-A--
1 ATTAATATATATT
* * *
66028 AATAATATTTATA
1 ATTAATATATATT
*
66041 ATTACTA-ATATT
1 ATTAATATATATT
66053 ATTAATATATATT
1 ATTAATATATATT
* *
66066 ATCATTATATATT
1 ATTAATATATATT
66079 A
1 A
66080 GGATAGTTAT
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
9 5 0.11
10 1 0.02
11 2 0.04
12 11 0.23
13 28 0.60
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTAATATATATT
Found at i:66034 original size:22 final size:21
Alignment explanation
Indices: 65994--66067 Score: 60
Period size: 25 Copynumber: 3.3 Consensus size: 21
65984 AAATTTTTTA
*
65994 ATATT-TTAATTAATTAATAT
1 ATATTATTAATTAAATAATAT
66014 ATATTATTAATTAAAATAATATTT
1 ATATTATTAATT-AAATAATA--T
* * *
66038 ATAATTACTAATATTATTAATAT
1 AT-ATTATTAAT-TAAATAATAT
66061 ATATTAT
1 ATATTAT
66068 CATTATATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
20 5 0.12
21 6 0.14
22 11 0.26
23 3 0.07
24 3 0.07
25 14 0.33
26 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATTATTAATTAAATAATAT
Found at i:66042 original size:18 final size:19
Alignment explanation
Indices: 65992--66055 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
65982 ATAAATTTTT
65992 TAATATTT-TAATTAATTAA
1 TAATATTTATAATTAA-TAA
66011 T-ATATATTATTAATTAA-AA
1 TAATAT-TTA-TAATTAATAA
*
66030 TAATATTTATAATTACTAA
1 TAATATTTATAATTAATAA
*
66049 TATTATT
1 TAATATT
66056 AATATATATT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 10 0.26
19 17 0.45
20 4 0.11
21 7 0.18
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATTTATAATTAATAA
Found at i:66625 original size:14 final size:14
Alignment explanation
Indices: 66606--66634 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
66596 TTAATAATAT
66606 TTGAAAATTTTTAA
1 TTGAAAATTTTTAA
66620 TTGAAAATTTTTAA
1 TTGAAAATTTTTAA
66634 T
1 T
66635 ATTCATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TTGAAAATTTTTAA
Found at i:67019 original size:12 final size:13
Alignment explanation
Indices: 67000--67034 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
66990 GTTATATAAT
67000 TAATAATTAATTC
1 TAATAATTAATTC
67013 T-ATAATTAA-TC
1 TAATAATTAATTC
67024 TAATAATTAAT
1 TAATAATTAAT
67035 ATTCTAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 3 0.15
12 16 0.80
13 1 0.05
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (13 bp):
TAATAATTAATTC
Found at i:68508 original size:180 final size:180
Alignment explanation
Indices: 68060--68605 Score: 476
Period size: 180 Copynumber: 3.0 Consensus size: 180
68050 AACTTATTTC
* * * * * * *
68060 AAATCTATTTACCGAATAAATTTAAATAATTATGGCTACTTGAACAATTATTTATTTCAAATCAT
1 AAATCTGTTTACCGAATAAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATAAT
* * * *** * * *
68125 TATGACCTTTTGTTTTGTCATAAAACAATTATTTTTGTTCATAAAAGCTTTTTGGATTAAAATAA
66 TAAGACCTTTTGTTTTGTCATAAAACAATTGTATCAATTCATAAAAGCTTTTTGAAATAAAACAA
* * * *** *
68190 TATTAATTTATTAATATTTTGATAATTAATAAGTAAAAGATTTAAAAAAT
131 TACTAACTTATCAATATTGAAAAAATTAATAAGTAAAAGATTTAAAAAAT
* * * * * * * **
68240 AAATATGTTTATCAAATAAATTCAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATTGT
1 AAATCTGTTTACCGAATAAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA-TAA
* * * * *
68305 TTTA-ATCTTTTGTTTCGTCATAAAA-AATTGTATCAATAT-ATATAGGCTTATTTGAAATAAAA
65 TTAAGACCTTTTGTTTTGTCATAAAACAATTGTATCAAT-TCATAAAAGCTT-TTTGAAATAAAA
* *
68367 CAATACTAACTTATCAATATTGAAAAAATTAATGAGTAAGAGATTTAAAAAAT
128 CAATACTAACTTATCAATATTGAAAAAATTAATAAGTAAAAGATTTAAAAAAT
* * *
68420 GAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATAAT
1 AAATCTGTTTACCGAATAAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATAAT
* * * * * * * *
68485 TAAGACCTTTTATTTTATCATAAAATAATTGT-TTACGTTCATACAAGCTTATTTCAAATAAAAT
66 TAAGACCTTTTGTTTTGTCATAAAACAATTGTATCA-ATTCATAAAAGCTT-TTTGAAATAAAAC
* ** ** *
68549 AATA-TAAATT-TACTAATATTCTAAGGATTAATAAGTAAAA-ATTTTAAAAAT
129 AATACTAACTTAT-C-AATATTGAAAAAATTAATAAGTAAAAGATTTAAAAAAT
68600 AAATCT
1 AAATCT
68606 ATATTAGTAT
Statistics
Matches: 287, Mismatches: 70, Indels: 18
0.77 0.19 0.05
Matches are distributed among these distances:
179 20 0.07
180 213 0.74
181 54 0.19
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (180 bp):
AAATCTGTTTACCGAATAAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATAAT
TAAGACCTTTTGTTTTGTCATAAAACAATTGTATCAATTCATAAAAGCTTTTTGAAATAAAACAA
TACTAACTTATCAATATTGAAAAAATTAATAAGTAAAAGATTTAAAAAAT
Found at i:68770 original size:21 final size:21
Alignment explanation
Indices: 68746--68786 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
68736 TTAATAATTT
68746 ATATATCAATAAAAATATTAA
1 ATATATCAATAAAAATATTAA
* **
68767 ATATATTAATATTAATATTA
1 ATATATCAATAAAAATATTA
68787 TTTCAAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
ATATATCAATAAAAATATTAA
Found at i:70755 original size:357 final size:353
Alignment explanation
Indices: 70042--71526 Score: 1199
Period size: 357 Copynumber: 4.2 Consensus size: 353
70032 AGTACTAACA
* ** ***
70042 ATTTTATTTCAAATAAGCTTGTATG--TTGAAAAACAATTGTTTTATGACAAAATGAAGGGTAAT
1 ATTTTATTTCGAATAAGCTTGTATGAATTG--AAACAATTGTTTTATGACAAAACAAAATTTAA-
* * * * * * * **
70105 AACAATTTGAAATAAATAATTGTTCAAATAGTCATAATTATTTAAACTAAGTCAGTAAATTGATT
63 AA-GATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTAA-TCAATAAACAGATT
* * * * * *
70170 GATTTTTTAAA--T-ATC---TTAATTTCCAAAATATTAAGAAAAATAGTATTATTTTATTTTGG
126 TATTTTTTAAATCTCTTCTTATTAATTTTCAAAATATTAA-TAAATTAGTATTATTTTATTTTGA
* * * * *
70229 ATAAACTTTTATGAACTAAAATAATTGTTTTATGACAAAACAAAAATTCACAACAATTTTAAATA
190 AT-AACTTATATGAACAAAAATAATTGTTTTATGACAAAACAAAGA-TCATAACAATTTGAAATA
* * * *
70294 TATACTTGTTTAAATAGTCATAACTATTTGAACTTGTTCGGCAAAAA-AATTTAGTTTTTCAAAT
253 GATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCGGCAAAAATAATTTAGTTTTT--AA-
* * * *
70358 ATCCTGCTTATTAATCTTTCAAA-AGTTAATAAATTAGTATT
315 AT-CT-CTTAATAATTTTTGAAATA-TTAATAAAGTAGTATT
* * * **
70399 ATTTTCTTTCGAATAAGCTTGTATGAATTGAAATAATTATTTTATGATTAAACAAAATGTTAGAA
1 ATTTTATTTCGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGACAAAACAAAAT-TTA-AA
* * * * * * *
70464 CGATCTGAAATAGATAATTATTTTAATAATCTTAACTATTTGAACTAATCAACAAACACATTTAT
64 AGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTAATCAATAAACAGATTTAT
*
70529 TTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTT-TATTTGAAT
129 TTTTTAAATCTCTT-CTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTAT-TTTGAAT
* * * *
70593 CAACTTATATGATAAAAAAACAATTGTTTTATGACAAAACAAAGATCATAACTATTTGAGATTA-
192 -AACTTATATGA-ACAAAAATAATTGTTTTATGACAAAACAAAGATCATAACAATTTGA-AATAG
* * * * *
70657 ATATTTATTCAAATAGTCATAACTATTAGAA-TTCCTT-TG-AAAAATAGCTTTAGTTTTTAAAT
254 ATAATTATTCAAATAGTCATAACTATTTGAACTT-GTTCGGCAAAAATA-ATTTAGTTTTTAAAT
70719 CTCTTAATAATTTTTGAAATATTAATAAAGTAGTATT
317 CTCTTAATAATTTTTGAAATATTAATAAAGTAGTATT
* * * * * *
70756 ATTTTATTTCAAATAAGTTTTTATTAACTGAAACAATTGTTTTAAGACAAAACAAAATTTCAAAA
1 ATTTTATTTCGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGACAAAACAAAATTT-AAAA
* * * * **
70821 GAATTTTAAATAGATAATTGTTTAAATAGTCATATCTATTTGAAATTGTTCAATAAACAGATTTA
65 G-ATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTG-AACTAATCAATAAACAGATTTA
*** * * *
70886 TTTTTTAAAATCTCTTGC-T-TTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTCTAAA
128 TTTTTT-AAATCTCTT-CTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAA
* ** * * *
70949 TAAGCTTGTATGAACTGAAATAATTATTTTATGACTAAACAAA-ATGATAGA-ATGATTTGAAAT
191 TAA-CTTATATGAACAAAAATAATTGTTTTATGACAAAACAAAGATCATA-ACA--ATTTGAAAT
** * * * * *
71012 AGATAATTATTCTGATAGTCTTAACTATTTGAACTAGTTCGGCTAACAT-ATTTATTTTTTAAAT
252 AGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCGGCAAAAATAATTTAGTTTTTAAAT
* * * * *
71076 TTCTTATTAATTTTTGAAATATTATTAAATTAGTATC
317 CTCTTAATAATTTTTGAAATATTAATAAAGTAGTATT
* ** * * *
71113 ATTTTA-ATCGGAATAAGCTTGTATGAAAGGAAACAATTGTTGTATGACGAAATAAAGATCATT-
1 ATTTTATTTC-GAATAAGCTTGTATGAATTGAAACAATTGTTTTATGACAAAACAAA-AT--TTA
* * * * * *
71176 -ATGATTTGAGATAGATAATTATTCAAATAGTCATAACTATTTGAACTAATTTAGTAAATAGATT
62 AAAGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTAA-TCAATAAACAGATT
* * * **
71240 TAGTTTTT--ATATC-TCTTATTAATTTTCAAAATATTAATAAATCAAAATTATTTTATTTTGAA
126 TATTTTTTAAATCTCTTCTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAA
* * *
71302 TAA-TTATGTATGAATAGAAATAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATA
191 TAACTTA--TATGAACAAAAATAATTGTTTTATGACAAAAC-AAAGATCATAACAATTTGAAATA
* * * * * * ** * * * *
71366 GATAATTGTTCTAATGGACATGACTATTTGAACTTATTTAGTAAACA-GATTTATTTTTTAAATC
253 GATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCGGCAAAAATAATTTAGTTTTTAAATC
* * * *
71430 TCTTTCATATTTATTTACAAAATATTAATAAAGTAATATT
318 TC-TTAATAATT-TTT--GAAATATTAATAAAGTAGTATT
* * *
71470 ATTTTATTTTGAATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA
1 ATTTTATTTCGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGACAAAACAAAA
71527 GATCATAACT
Statistics
Matches: 895, Mismatches: 184, Indels: 99
0.76 0.16 0.08
Matches are distributed among these distances:
351 3 0.00
352 2 0.00
353 132 0.15
354 10 0.01
355 16 0.02
356 110 0.12
357 420 0.47
358 37 0.04
359 21 0.02
360 10 0.01
361 5 0.01
362 81 0.09
363 48 0.05
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (353 bp):
ATTTTATTTCGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGACAAAACAAAATTTAAAAG
ATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTAATCAATAAACAGATTTATTT
TTTAAATCTCTTCTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAATAACT
TATATGAACAAAAATAATTGTTTTATGACAAAACAAAGATCATAACAATTTGAAATAGATAATTA
TTCAAATAGTCATAACTATTTGAACTTGTTCGGCAAAAATAATTTAGTTTTTAAATCTCTTAATA
ATTTTTGAAATATTAATAAAGTAGTATT
Found at i:70850 original size:177 final size:174
Alignment explanation
Indices: 70042--71526 Score: 922
Period size: 177 Copynumber: 8.3 Consensus size: 174
70032 AGTACTAACA
* * ** ***
70042 ATTTTATTTCAAATAAGCTTGTATG-TTGAAAAACAATTGTTTTATGACAAAATGAAGGGT-AAT
1 ATTTTATTTCGAATAAGCTTGTATGAATG--AAACAATTGTTTTATGACAAAACAAAATTTCAA-
* * * * * * * ** * * **
70105 AACAATTTGAAATAAATAATTGTTCAAATAGTCATAATTATTTAAACTAAGTCAGTAAATTGATT
63 AA-GATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAATTATTTGA-AAAACAGATT
* * ** * *
70170 GATTTTTTAAATATC---TTAATTTCCAAAATATTAAGAAAAATAGTATT
126 TATTTTTTAAATCTCTTATTAATTTTTAAAATATTAA-TAAATTAGTATT
* * * * * * *
70217 ATTTTATTTTGGATAAACTTTTATGAACTAAAATAATTGTTTTATGACAAAACAAAAATTCACAA
1 ATTTTATTTCGAATAAGCTTGTATGAA-TGAAACAATTGTTTTATGACAAAACAAAATTTCA-AA
* * * * * *
70282 CA-ATTTTAAATATATACTTGTTTAAATAGTCATAACTATTTGAACTTGTTCGGCAAAAA-A-AT
64 -AGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAA-TTATT-TG-AAAAACAGAT
* * *
70344 TTAGTTTTTCAAATATCCTGCTTATTAATCTTTCAAAA-GTTAATAAATTAGTATT
125 TTA-TTTTT-TAA-AT-CT-CTTATTAAT-TTTTAAAATATTAATAAATTAGTATT
* * * **
70399 ATTTTCTTTCGAATAAGCTTGTATGAATTGAAATAATTATTTTATGATTAAACAAAATGTT-AGA
1 ATTTTATTTCGAATAAGCTTGTATGAA-TGAAACAATTGTTTTATGACAAAACAAAAT-TTCA-A
* * * * * * * * *
70463 ACGATCTGAAATAGATAATTATTTTAATAATCTTAACTATTTGAACTA-ATCAACAAACACATTT
63 AAGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAATTATTTGAA-AAACAGATTT
* *
70527 ATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATT
127 ATTTTTTAAA--TC-T-CTTATTAATTTTTAAAATATTAATAAATTAGTATT
* **
70579 ATTTTTATTT-GAATCAA-CTTATATGATAAAAAAACAATTGTTTTATGACAAAACAAAGA--TC
1 A-TTTTATTTCGAAT-AAGCTTGTATG--AATGAAACAATTGTTTTATGACAAAACAAA-ATTTC
** * * * * * *
70640 ATAACTATTTGAGATTA-ATATTTATTCAAATAGTCATAACTATTAGAATTCCTTTGAAAAATAG
61 A-AAAGATTTGA-AATAGATAATTATTTAAATAGTCATAACTATTTGAATT-ATTTGAAAAACAG
* * * * *
70704 CTTTAGTTTTTAAATCTCTTAATAATTTTTGAAATATTAATAAAGTAGTATT
123 ATTTATTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATTAGTATT
* * * * *
70756 ATTTTATTTCAAATAAGTTTTTATTAACTGAAACAATTGTTTTAAGACAAAACAAAATTTCAAAA
1 ATTTTATTTCGAATAAGCTTGTATGAA-TGAAACAATTGTTTTATGACAAAACAAAATTTCAAAA
* * * * *
70821 GAATTTTAAATAGATAATTGTTTAAATAGTCATATCTATTTGAAATT-GTTCAATAAACAGATTT
65 G-ATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTG-AATTATTTGAA-AAACAGATTT
* ** *
70885 ATTTTTTAAAATCTCTTGCTTTAATTTTTTGAATGTTAATAAATTAGTATT
127 ATTTTTT-AAATCTCTT--ATTAATTTTTAAAATATTAATAAATTAGTATT
* * * * *
70936 ATTTTA-TTCTAAATAAGCTTGTATGAACTGAAATAATTATTTTATGACTAAACAAAATGAT-AG
1 ATTTTATTTC-GAATAAGCTTGTATGAA-TGAAACAATTGTTTTATGACAAAACAAAAT-TTCA-
* * * * * *** *
70999 AATGATTTGAAATAGATAATTATTCT-GATAGTCTTAACTATTTGAACTAGTTCGGCTAACATAT
62 AAAGATTTGAAATAGATAATTATT-TAAATAGTCATAACTATTTGAATTA-TTTGAAAAACAGAT
* * * *
71063 TTATTTTTTAAATTTCTTATTAATTTTTGAAATATTATTAAATTAGTATC
125 TTATTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATTAGTATT
* * * * *
71113 ATTTTA-ATCGGAATAAGCTTGTATGAAAGGAAACAATTGTTGTATGACGAAATAAAGA--TCAT
1 ATTTTATTTC-GAATAAGCTTGTATG-AATGAAACAATTGTTTTATGACAAAACAAA-ATTTCA-
* * * * * * *
71175 TATGATTTGAGATAGATAATTATTCAAATAGTCATAACTATTTGAACTAATTT-AGTAAATAGAT
62 AAAGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAA-TTATTTGA-AAAACAGAT
* * * * **
71239 TTAGTTTTTATATCTCTTATTAATTTTCAAAATATTAATAAATCAAAATT
125 TTATTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATTAGTATT
* * * **
71289 ATTTTATTTTGAATAA-TTATGTATGAATAGAAATAATTGTTTTATGACAAAACAAAAGGTCATA
1 ATTTTATTTCGAATAAGCT-TGTATGAAT-GAAACAATTGTTTTATGACAAAACAAAATTTCA-A
* * * * *
71353 ACA-ATTTGAAATAGATAATTGTTCT-AATGGACATGACTATTTGAACTTATTT-AGTAAACAGA
63 A-AGATTTGAAATAGATAATTATT-TAAATAGTCATAACTATTTGAA-TTATTTGA-AAAACAGA
* * *
71415 TTTATTTTTTAAATCTCTT-TCATATTTATTTACAAAATATTAATAAAGTAATATT
124 TTTATTTTTTAAATCTCTTAT--TAATT-TTT--AAAATATTAATAAATTAGTATT
* *
71470 ATTTTATTTTGAATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA
1 ATTTTATTTCGAATAAGCTTGTATGAAT-GAAACAATTGTTTTATGACAAAACAAAA
71527 GATCATAACT
Statistics
Matches: 1027, Mismatches: 211, Indels: 138
0.75 0.15 0.10
Matches are distributed among these distances:
175 92 0.09
176 182 0.18
177 237 0.23
178 27 0.03
179 34 0.03
180 202 0.20
181 134 0.13
182 101 0.10
183 11 0.01
184 7 0.01
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (174 bp):
ATTTTATTTCGAATAAGCTTGTATGAATGAAACAATTGTTTTATGACAAAACAAAATTTCAAAAG
ATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAATTATTTGAAAAACAGATTTATTT
TTTAAATCTCTTATTAATTTTTAAAATATTAATAAATTAGTATT
Found at i:71297 original size:533 final size:531
Alignment explanation
Indices: 70070--71526 Score: 1587
Period size: 533 Copynumber: 2.7 Consensus size: 531
70060 TTGTATGTTG
* * * * * * * *
70070 AAAAACAATTGTTTTATGACAAAATGAAGGGTAATAACAATTTGAAATAAATAATTGTTCAAATA
1 AAAAACAATTGTTGTATGACAAAA-CAAAGATCATAACTATTTGAGAT-AATAATTATTCAAATA
* * * * * * * * *
70135 GTCATAATTATTTAAACTAAGTCAGTAAATTGATTGATTTTTTAAATATC---TTAATTTCCAAA
64 GTCATAACTATTTGAACTAATTTAGTAAATAGATTTAGTTTTTAAATCTCTTATTAATTTTCAAA
* * * *
70197 ATATTAAGAAA-AATAGTATTATTTTATTTTGGATAAACTTTTATGAACTAAAATAATTGTTTTA
129 ATATTAATAAATAA-A--ATTATTTTATTTTGAAT-AATTTTTATGAACTGAAATAATTGTTTTA
* * *
70261 TGACAAAACAAAAATTCACAACAATTTTAAATATATACTTGTTTAAATAGTCATAACTATTTGAA
190 TGACAAAACAAAAATTCAAAACAATTTTAAATAGATAATTGTTTAAATAGTCAT-ACTATTTGAA
* * * * * * * * *
70326 CTTGTTCGGCAAAAAAATTTAGTTTTTCAAATATCCTGCTTATTAATCTTTCAAAA-GTTAATAA
254 CTTGTTCAGTAAACAGATTTA-TTTTTTAAATCTCTTGCATATTAAT-TTTTAAAATGTTAATAA
* *
70390 ATTAGTATTATTTTCTTTCGAATAAGCTTGTATGAATTGAAATAATTATTTTATGATTAAACAAA
317 ATTAGTATTATTTTATTT-GAATAAGCTTGTATGAA-TGAAATAATTATTTTATGACTAAACAAA
* *
70455 ATGTTAGAACGATCTGAAATAGATAATTATTTTAATAATCTTAACTATTTGAACTAATCAACAAA
380 ATGATAGAACGATCTGAAATAGATAATTATTCTAATAATCTTAACTATTTGAACTAATCAACAAA
* *
70520 CACATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTT
445 CACATTTATTTTTTAAA-CTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATCATTTTA
**
70585 ATTTGAATCAACTTATATGATAA
509 ATCGGAATCAACTTATATGATAA
* *
70608 AAAAACAATTGTTTTATGACAAAACAAAGATCATAACTATTTGAGATTAATATTTATTCAAATAG
1 AAAAACAATTGTTGTATGACAAAACAAAGATCATAACTATTTGAGA-TAATAATTATTCAAATAG
* * ** * * * **
70673 TCATAACTATTAGAATTCCTTT-GAAAAATAGCTTTAGTTTTTAAATCTCTTAATAATTTTTGAA
65 TCATAACTATTTGAACTAATTTAG-TAAATAGATTTAGTTTTTAAATCTCTTATTAATTTTCAAA
** ** * * *
70737 ATATTAATAAAGTAGTATTATTTTATTTCAAATAAGTTTTTATTAACTGAAACAATTGTTTTAAG
129 ATATTAATAAA-TAAAATTATTTTATTTTGAATAA-TTTTTATGAACTGAAATAATTGTTTTATG
* * *
70802 ACAAAACAAAATTTCAAAAGAATTTTAAATAGATAATTGTTTAAATAGTCATATCTATTTGAAAT
192 ACAAAACAAAAATTCAAAACAATTTTAAATAGATAATTGTTTAAATAGTCATA-CTATTTGAACT
* **
70867 TGTTCAATAAACAGATTTATTTTTTAAAATCTCTTGC-T-TTAATTTTTTGAATGTTAATAAATT
256 TGTTCAGTAAACAGATTTATTTTTT-AAATCTCTTGCATATTAATTTTTAAAATGTTAATAAATT
*
70930 AGTATTATTTTATTCTAAATAAGCTTGTATGAACTGAAATAATTATTTTATGACTAAACAAAATG
320 AGTATTATTTTATT-TGAATAAGCTTGTATGAA-TGAAATAATTATTTTATGACTAAACAAAATG
* * * * * ** *
70995 ATAGAATGATTTGAAATAGATAATTATTCTGATAGTCTTAACTATTTGAACTAGTTCGGCTAACA
383 ATAGAACGATCTGAAATAGATAATTATTCTAATAATCTTAACTATTTGAACTA-ATCAACAAACA
* **
71060 TATTTATTTTTTAAA-T-TT-CTTATTAATTTTTGAAATATTATTAAATTAGTATCATTTTAATC
447 CATTTATTTTTTAAACTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATCATTTTAATC
*
71122 GGAAT-AAGCTTGTATGA-AA
512 GGAATCAA-CTTATATGATAA
** * * *
71141 GGAAACAATTGTTGTATGACGAAATAAAGATCATTA-TGATTTGAGATAGATAATTATTCAAATA
1 AAAAACAATTGTTGTATGACAAAACAAAGATCATAACT-ATTTGAGATA-ATAATTATTCAAATA
*
71205 GTCATAACTATTTGAACTAATTTAGTAAATAGATTTAGTTTTTATATCTCTTATTAATTTTCAAA
64 GTCATAACTATTTGAACTAATTTAGTAAATAGATTTAGTTTTTAAATCTCTTATTAATTTTCAAA
*
71270 ATATTAATAAATCAAAATTATTTTATTTTGAATAATTATGTATGAA-TAGAAATAATTGTTTTAT
129 ATATTAATAAAT-AAAATTATTTTATTTTGAATAATT-TTTATGAACT-GAAATAATTGTTTTAT
** * * * *
71334 GACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCT-AATGGACATGACTATTTGAA
191 GACAAAACAAAAATTCAAAACAATTTTAAATAGATAATTGTT-TAAATAGTCAT-ACTATTTGAA
* * * * ** * *
71398 CTTATTTAGTAAACAGATTTATTTTTTAAATCTCTTTCATATTTATTTACAAAATATTAATAAAG
254 CTTGTTCAGTAAACAGATTTATTTTTTAAATCTCTTGCATATTAATTTTTAAAATGTTAATAAAT
* * * * *
71463 TAATATTATTTTATTTTGAATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA
319 TAGTATTATTTTA-TTTGAATAAGCTTGTATGAAT-GAAATAATTATTTTATGACTAAACAAAA
71527 GATCATAACT
Statistics
Matches: 767, Mismatches: 126, Indels: 56
0.81 0.13 0.06
Matches are distributed among these distances:
532 17 0.02
533 236 0.31
534 124 0.16
535 4 0.01
536 7 0.01
537 186 0.24
538 56 0.07
539 118 0.15
540 18 0.02
542 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.41
Consensus pattern (531 bp):
AAAAACAATTGTTGTATGACAAAACAAAGATCATAACTATTTGAGATAATAATTATTCAAATAGT
CATAACTATTTGAACTAATTTAGTAAATAGATTTAGTTTTTAAATCTCTTATTAATTTTCAAAAT
ATTAATAAATAAAATTATTTTATTTTGAATAATTTTTATGAACTGAAATAATTGTTTTATGACAA
AACAAAAATTCAAAACAATTTTAAATAGATAATTGTTTAAATAGTCATACTATTTGAACTTGTTC
AGTAAACAGATTTATTTTTTAAATCTCTTGCATATTAATTTTTAAAATGTTAATAAATTAGTATT
ATTTTATTTGAATAAGCTTGTATGAATGAAATAATTATTTTATGACTAAACAAAATGATAGAACG
ATCTGAAATAGATAATTATTCTAATAATCTTAACTATTTGAACTAATCAACAAACACATTTATTT
TTTAAACTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATCATTTTAATCGGAATCAAC
TTATATGATAA
Found at i:71606 original size:14 final size:14
Alignment explanation
Indices: 71589--71616 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
71579 CTTAATACTA
71589 ATTAAATAATCAAT
1 ATTAAATAATCAAT
71603 ATTAAATAATCAAT
1 ATTAAATAATCAAT
71617 TAATAATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (14 bp):
ATTAAATAATCAAT
Found at i:71657 original size:21 final size:21
Alignment explanation
Indices: 71631--71670 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
71621 AATGATTATT
*
71631 AATATTAATTATCTAATAATC
1 AATATTAATTATATAATAATC
*
71652 AATATTTATTATATAATAA
1 AATATTAATTATATAATAA
71671 AACAACAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (21 bp):
AATATTAATTATATAATAATC
Found at i:77227 original size:22 final size:21
Alignment explanation
Indices: 77196--77244 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
77186 ACAAAACTAT
77196 TTAATATATAATAATTATAATA
1 TTAATATATAATAATTA-AATA
* * *
77218 TTAATTTATAATTATTAACTA
1 TTAATATATAATAATTAAATA
77239 TTAATA
1 TTAATA
77245 ATGATAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAATATATAATAATTAAATA
Found at i:77600 original size:30 final size:29
Alignment explanation
Indices: 77568--77683 Score: 80
Period size: 30 Copynumber: 3.9 Consensus size: 29
77558 TCATTAAAAT
77568 AATTATTAATATTTATAATTTAAATAATA
1 AATTATTAATATTTATAATTTAAATAATA
* *
77597 TAATAATTAATTATTT-TATTTTAATTATAATA
1 -AATTATTAA-TATTTATAATTTAA--ATAATA
*
77629 AATTA-TAAT-TTATTTAATTATAAATGAATA
1 AATTATTAATATT-TATAATT-TAAAT-AATA
* *
77659 AGTT-TTAATA-TAATAATATTAAATA
1 AATTATTAATATTTATAAT-TTAAATA
77684 CAATTTAGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 22
0.70 0.07 0.22
Matches are distributed among these distances:
28 3 0.04
29 13 0.19
30 35 0.51
31 12 0.17
32 6 0.09
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (29 bp):
AATTATTAATATTTATAATTTAAATAATA
Found at i:77625 original size:27 final size:25
Alignment explanation
Indices: 77567--77651 Score: 77
Period size: 25 Copynumber: 3.4 Consensus size: 25
77557 TTCATTAAAA
* **
77567 TAATTATTAAT-ATTTATAATTTAAA
1 TAATTA-TAATAAATTATAATTTATT
*
77592 TAA-TATAAT-AATTAATTATTTTATTT
1 TAATTATAATAAATT-A-TAATTTA-TT
77618 TAATTATAATAAATTATAATTTATT
1 TAATTATAATAAATTATAATTTATT
77643 TAATTATAA
1 TAATTATAA
77652 ATGAATAAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
23 7 0.14
24 3 0.06
25 20 0.40
26 9 0.18
27 7 0.14
28 4 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TAATTATAATAAATTATAATTTATT
Found at i:77834 original size:16 final size:16
Alignment explanation
Indices: 77809--77849 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
77799 TAAGATAATT
77809 TTTAAATTAATTATAA
1 TTTAAATTAATTATAA
*
77825 TTTAATTTAATTATAA
1 TTTAAATTAATTATAA
*
77841 TTTATATTA
1 TTTAAATTA
77850 TAATATTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTAAATTAATTATAA
Found at i:77851 original size:12 final size:12
Alignment explanation
Indices: 77827--77860 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
77817 AATTATAATT
77827 TAATTTA-ATTA
1 TAATTTATATTA
77838 TAATTTATATTA
1 TAATTTATATTA
77850 TAATATTATAT
1 TAAT-TTATAT
77861 ATTTGAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.33
12 8 0.38
13 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TAATTTATATTA
Found at i:78071 original size:17 final size:17
Alignment explanation
Indices: 78035--78071 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
78025 ATTAATAACT
*
78035 ATATATAATAATAATAA
1 ATATATAATAAAAATAA
*
78052 ATATATAATAAAAATTA
1 ATATATAATAAAAATAA
78069 ATA
1 ATA
78072 ATTAATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATATATAATAAAAATAA
Found at i:78194 original size:15 final size:15
Alignment explanation
Indices: 78174--78224 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
78164 TTAATATAAT
78174 TAATTATTAATTTAC
1 TAATTATTAATTTAC
*
78189 TAATTAATAATTGATAC
1 TAATTATTAATT--TAC
* *
78206 TAATAATTAATTTAA
1 TAATTATTAATTTAC
78221 TAAT
1 TAAT
78225 CAAAATAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
15 17 0.57
17 13 0.43
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (15 bp):
TAATTATTAATTTAC
Found at i:80155 original size:21 final size:20
Alignment explanation
Indices: 80090--80159 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
80080 TTGAACAACC
* *
80090 GATCGATCCTTTTAAGAGGG
1 GATCGATCCTCTTATGAGGG
* *
80110 GATCGATCC-CTTACCTTAGGT
1 GATCGATCCTCTTA--TGAGGG
80131 GATCGATCCTCTATATGAGGG
1 GATCGATCCTCT-TATGAGGG
80152 GATCGATC
1 GATCGATC
80160 TGTTTTTTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
19 3 0.08
20 9 0.22
21 24 0.60
22 2 0.05
23 2 0.05
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (20 bp):
GATCGATCCTCTTATGAGGG
Found at i:81042 original size:14 final size:12
Alignment explanation
Indices: 81021--81091 Score: 54
Period size: 14 Copynumber: 5.5 Consensus size: 12
81011 TATTTAATTA
81021 TAAAATTAGTAAT
1 TAAAATTA-TAAT
81034 TAAATATTACTAAT
1 TAAA-ATTA-TAAT
81048 ATAAAATTATAATAT
1 -TAAAATTAT-A-AT
*
81063 TAAAAATA-AAT
1 TAAAATTATAAT
* *
81074 TAATATTAAAAT
1 TAAAATTATAAT
81086 TAAAAT
1 TAAAAT
81092 CCTTATAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
11 8 0.17
12 9 0.19
13 5 0.10
14 20 0.42
15 6 0.12
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (12 bp):
TAAAATTATAAT
Found at i:81079 original size:17 final size:17
Alignment explanation
Indices: 81057--81089 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81047 TATAAAATTA
81057 TAATATTAAAAATAAAT
1 TAATATTAAAAATAAAT
*
81074 TAATATTAAAATTAAA
1 TAATATTAAAAATAAA
81090 ATCCTTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATATTAAAAATAAAT
Found at i:81265 original size:19 final size:20
Alignment explanation
Indices: 81229--81270 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
81219 AACATAAAAT
* *
81229 TATTATAATATTAGTAATAA
1 TATTATAATACTAATAATAA
81249 TATT-TAATACTAATAATAA
1 TATTATAATACTAATAATAA
81268 TAT
1 TAT
81271 CATCATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
TATTATAATACTAATAATAA
Found at i:81603 original size:25 final size:26
Alignment explanation
Indices: 81560--81613 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
81550 ATTATTAAAT
*
81560 TATTTATAAATTATTAAAT-T-ATTA
1 TATTTATAAATTATCAAATATAATTA
*
81584 TATTTAATATATTATCAAATATAATTA
1 TATTT-ATAAATTATCAAATATAATTA
81611 TAT
1 TAT
81614 AATATTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 12 0.48
26 1 0.04
27 7 0.28
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (26 bp):
TATTTATAAATTATCAAATATAATTA
Found at i:81615 original size:8 final size:8
Alignment explanation
Indices: 81602--81643 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
81592 ATATTATCAA
81602 ATATAATT
1 ATATAATT
81610 ATATAA-T
1 ATATAATT
*
81617 ATTTAATT
1 ATATAATT
81625 ATATAATT
1 ATATAATT
*
81633 AATAAAATT
1 -ATATAATT
81642 AT
1 AT
81644 TTATTATGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
7 6 0.21
8 16 0.55
9 7 0.24
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATATAATT
Found at i:81642 original size:32 final size:30
Alignment explanation
Indices: 81549--81648 Score: 84
Period size: 32 Copynumber: 3.4 Consensus size: 30
81539 AGTTACCAAT
* * *
81549 AATTATTA-AATTATTTATA-AATT-ATTA
1 AATTATTATATTTAATTATATAATTAATAA
* * *
81576 AATTATTATATTTAA-TATATTATCAAATAT
1 AATTATTATATTTAATTATATAAT-TAATAA
81606 AATTATATAATATTTAATTATATAATTAATAA
1 AATTAT-T-ATATTTAATTATATAATTAATAA
81638 AATTATT-TATT
1 AATTATTATATT
81649 ATGATAAAGT
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
27 12 0.21
28 6 0.11
29 4 0.07
30 8 0.14
31 2 0.04
32 18 0.32
33 7 0.12
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (30 bp):
AATTATTATATTTAATTATATAATTAATAA
Found at i:82187 original size:35 final size:33
Alignment explanation
Indices: 82123--82191 Score: 86
Period size: 32 Copynumber: 2.0 Consensus size: 33
82113 AATATTATTA
* *
82123 ATTTATTATTACTATTAAATAAGTTAATTAATT
1 ATTTATTATTAATATTAAACAAGTTAATTAATT
82156 ATTT-TTATTAATATTAATACAAGTTCAAATTAATT
1 ATTTATTATTAATATTAA-ACAAGTT--AATTAATT
82191 A
1 A
82192 AATACAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 12 0.39
33 10 0.32
35 9 0.29
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.49
Consensus pattern (33 bp):
ATTTATTATTAATATTAAACAAGTTAATTAATT
Found at i:82312 original size:14 final size:15
Alignment explanation
Indices: 82287--82316 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
82277 TATATTTTCG
82287 TTTTCTTGTGTGTTC
1 TTTTCTTGTGTGTTC
82302 TTTTC-TGTGTGTTC
1 TTTTCTTGTGTGTTC
82316 T
1 T
82317 GTCTGGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.00, C:0.13, G:0.20, T:0.67
Consensus pattern (15 bp):
TTTTCTTGTGTGTTC
Found at i:82383 original size:16 final size:16
Alignment explanation
Indices: 82359--82431 Score: 71
Period size: 16 Copynumber: 4.6 Consensus size: 16
82349 CTTAATTAAC
*
82359 TCTAATATATTATAAT
1 TCTATTATATTATAAT
*
82375 TCTATTATAATATAAT
1 TCTATTATATTATAAT
*
82391 T-TATTAAATATATAAT
1 TCTATTATAT-TATAAT
82407 T-TATTATAATTA-AAT
1 TCTATTAT-ATTATAAT
*
82422 TCTATAATAT
1 TCTATTATAT
82432 AAGAGTAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
15 12 0.25
16 34 0.71
17 2 0.04
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (16 bp):
TCTATTATATTATAAT
Found at i:82748 original size:17 final size:17
Alignment explanation
Indices: 82717--82758 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
82707 AGTTTTTACA
82717 ATTTCAATAATTATTT-
1 ATTTCAATAATTATTTG
*
82733 ATTTCAAATCATTATTTG
1 ATTTC-AATAATTATTTG
82751 ATTT-AATA
1 ATTTCAATA
82759 TTAAAGAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 8 0.36
17 10 0.45
18 4 0.18
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTTCAATAATTATTTG
Found at i:83245 original size:18 final size:16
Alignment explanation
Indices: 83228--83289 Score: 63
Period size: 15 Copynumber: 3.8 Consensus size: 16
83218 CATTCAAATT
*
83228 TTAAATATAATATTAAT
1 TTAAA-ATAATATTAAA
83245 TTAAAATAAT-TTAAA
1 TTAAAATAATATTAAA
* *
83260 TTAAATTAATAATAATA
1 TTAAAATAATATTAA-A
83277 TTAACAATAATAT
1 TTAA-AATAATAT
83290 GATTTACGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
15 13 0.35
16 8 0.22
17 10 0.27
18 6 0.16
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAAAATAATATTAAA
Found at i:84015 original size:29 final size:31
Alignment explanation
Indices: 83953--84035 Score: 89
Period size: 31 Copynumber: 2.6 Consensus size: 31
83943 AGTAGGTTAT
*
83953 TAATATTTTAGATAAATAATAATTTTATAATTT-A
1 TAATATTTTA-AT-AATTATAA--TTATAATTTAA
* *
83987 TCA-ATTTTAATTATTATAATTATAATTTAA
1 TAATATTTTAATAATTATAATTATAATTTAA
84017 TAATATTTTAATAATTATA
1 TAATATTTTAATAATTATA
84036 TAATTACTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
29 9 0.21
30 3 0.07
31 20 0.48
32 2 0.05
33 6 0.14
34 2 0.05
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (31 bp):
TAATATTTTAATAATTATAATTATAATTTAA
Found at i:84190 original size:9 final size:9
Alignment explanation
Indices: 84178--84228 Score: 59
Period size: 9 Copynumber: 5.7 Consensus size: 9
84168 ATAATTATAT
84178 TATAATAAA
1 TATAATAAA
*
84187 TATAATATA
1 TATAATAAA
*
84196 TATAA-ATA
1 TATAATAAA
84204 TAATAATAAA
1 T-ATAATAAA
*
84214 TATAATAAT
1 TATAATAAA
84223 TATAAT
1 TATAAT
84229 GGTTTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
8 4 0.11
9 30 0.81
10 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
TATAATAAA
Found at i:84209 original size:18 final size:18
Alignment explanation
Indices: 84167--84218 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
84157 GTATAATTTT
*
84167 TATAATTATAT-TAT-AA
1 TATAATAATATATATAAA
*
84183 TAAATATAATATATATAAA
1 TATA-ATAATATATATAAA
*
84202 TATAATAATAAATATAA
1 TATAATAATATATATAA
84219 TAATTATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 3 0.10
17 6 0.21
18 15 0.52
19 5 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TATAATAATATATATAAA
Found at i:84214 original size:12 final size:12
Alignment explanation
Indices: 84174--84222 Score: 62
Period size: 12 Copynumber: 3.8 Consensus size: 12
84164 TTTTATAATT
*
84174 ATATTATAATAA
1 ATATAATAATAA
84186 ATATAATATATATAA
1 ATAT-A-ATA-ATAA
84201 ATATAATAATAA
1 ATATAATAATAA
84213 ATATAATAAT
1 ATATAATAAT
84223 TATAATGGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 18 0.55
13 3 0.09
14 4 0.12
15 8 0.24
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATATAATAATAA
Found at i:84222 original size:15 final size:14
Alignment explanation
Indices: 84168--84220 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
84158 TATAATTTTT
* *
84168 ATAATTATATTATA
1 ATAAATATAATATA
84182 ATAAATATAATATA
1 ATAAATATAATATA
84196 TATAAATAT-A-ATA
1 -ATAAATATAATATA
84209 ATAAATATAATA
1 ATAAATATAATA
84221 ATTATAATGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
12 8 0.24
13 4 0.12
14 14 0.41
15 8 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
ATAAATATAATATA
Found at i:84227 original size:15 final size:14
Alignment explanation
Indices: 84149--84227 Score: 72
Period size: 15 Copynumber: 5.5 Consensus size: 14
84139 CCAAAAATAG
84149 ATTATAAAGTATAATT
1 ATTATAAA-TATAA-T
* * *
84165 TTTATAATTATATT
1 ATTATAAATATAAT
*
84179 ATAATAAATATAAT
1 ATTATAAATATAAT
84193 ATATATAAATATAAT
1 AT-TATAAATATAAT
84208 A--ATAAATATAAT
1 ATTATAAATATAAT
84220 AATTATAA
1 -ATTATAA
84228 TGGTTTAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
12 11 0.22
13 1 0.02
14 13 0.25
15 20 0.39
16 6 0.12
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (14 bp):
ATTATAAATATAAT
Found at i:84552 original size:11 final size:11
Alignment explanation
Indices: 84510--84560 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
84500 TTAACTATTA
84510 ATAATTTAAAT
1 ATAATTTAAAT
*
84521 ATAAATATAAAT
1 AT-AATTTAAAT
* *
84533 ATAAATTAATT
1 ATAATTTAAAT
*
84544 ATAATTTAATT
1 ATAATTTAAAT
84555 ATAATT
1 ATAATT
84561 CAAAATTGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
11 24 0.71
12 10 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
ATAATTTAAAT
Found at i:84788 original size:10 final size:9
Alignment explanation
Indices: 84757--84799 Score: 50
Period size: 10 Copynumber: 4.4 Consensus size: 9
84747 AAAATATCAT
84757 TAATTATTAA
1 TAATTA-TAA
*
84767 CAATTATAA
1 TAATTATAA
84776 TAATTATATA
1 TAATTATA-A
84786 TAATTATACA
1 TAATTATA-A
84796 TAAT
1 TAAT
84800 ATAGTTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 10 0.34
10 19 0.66
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (9 bp):
TAATTATAA
Found at i:85082 original size:16 final size:16
Alignment explanation
Indices: 85037--85070 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
85027 ATTAAATTGT
85037 TAATT-ATATAATATAA
1 TAATTAATAT-ATATAA
85053 TAATTAATATATATAA
1 TAATTAATATATATAA
85069 TA
1 TA
85071 TTCATTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAATTAATATATATAA
Found at i:85458 original size:20 final size:20
Alignment explanation
Indices: 85433--85481 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
85423 TAATAATAGA
85433 TATAAT-TTGACTATATTAAT
1 TATAATATT-ACTATATTAAT
* *
85453 TATAATATTATTATATTTAT
1 TATAATATTACTATATTAAT
85473 TAT-ATATTA
1 TATAATATTA
85482 TAATAATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 6 0.23
20 18 0.69
21 2 0.08
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
TATAATATTACTATATTAAT
Found at i:85495 original size:20 final size:20
Alignment explanation
Indices: 85472--85511 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
85462 ATTATATTTA
85472 TTATA-TATTATAATAATATT
1 TTATAGTATTA-AATAATATT
85492 TTATAGTATTAAATAATATT
1 TTATAGTATTAAATAATATT
85512 AATTCATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (20 bp):
TTATAGTATTAAATAATATT
Found at i:85536 original size:14 final size:14
Alignment explanation
Indices: 85499--85537 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
85489 ATTTTATAGT
85499 ATTAAATAATATTA
1 ATTAAATAATATTA
* * *
85513 ATTCATTAATGTTA
1 ATTAAATAATATTA
85527 ATTAAATAATA
1 ATTAAATAATA
85538 AAATATTAAT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (14 bp):
ATTAAATAATATTA
Found at i:86272 original size:181 final size:179
Alignment explanation
Indices: 86021--86355 Score: 392
Period size: 181 Copynumber: 1.9 Consensus size: 179
86011 TTACCAAACA
* * * *
86021 AGTTTAAATAGTTATGACTATTTAAACAATTATCATTTTAAAATTGTTATGACCTTTTATTTTAT
1 AGTTCAAATAGTTATGACCATTTAAACAATTATCATTTCAAAATTGTTATGAACTTTTATTTTAT
* * *
86086 CATAAAACAATTATTTCATT-TCATA-AAAACTTATCCAAAACAAAATAATATTACTTTATTAAT
66 CATAAAACAATTATTT--TTATCATACAAAACTAAT-CAAAACAAAATAATACTA-GTTATTAAT
*
86149 ATTTCAAAAATTAAGAAGTTGGAGATTTAAAACATAAATCTTTTTATTGAATC
127 ATTTCAAAAATTAAGAAGTAGGAGATTTAAAACATAAATCTTTTTATTGAATC
* * *
86202 AGTTCAAATAGTTATGGCCATTTGAACAATTATCTATTTCAAACCA-T-TT-TGAACTTTTGTTT
1 AGTTCAAATAGTTATGACCATTTAAACAATTATC-ATTTCAAA--ATTGTTATGAACTTTTATTT
* * ** * * *
86264 TGTCATAAAACAATTGTTTTTCATCATACAAGCCTAATTAGAATAAAATAATACTAGTTATTAAT
63 TATCATAAAACAATTATTTTT-ATCATACAAAACTAATCAAAACAAAATAATACTAGTTATTAAT
*
86329 ATTTCAAAAATTAATAAGTAGGAGATT
127 ATTTCAAAAATTAAGAAGTAGGAGATT
86356 ATCTGTTTAC
Statistics
Matches: 129, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
179 2 0.02
180 33 0.26
181 77 0.60
182 15 0.12
183 1 0.01
184 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (179 bp):
AGTTCAAATAGTTATGACCATTTAAACAATTATCATTTCAAAATTGTTATGAACTTTTATTTTAT
CATAAAACAATTATTTTTATCATACAAAACTAATCAAAACAAAATAATACTAGTTATTAATATTT
CAAAAATTAAGAAGTAGGAGATTTAAAACATAAATCTTTTTATTGAATC
Found at i:86541 original size:9 final size:10
Alignment explanation
Indices: 86525--86574 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 10
86515 ACTATACTAT
86525 TATAATTATA
1 TATAATTATA
86535 T-TAATTATA
1 TATAATTATA
86544 TAATAATTATAA
1 T-ATAATTAT-A
*
86556 TACAATTA-A
1 TATAATTATA
86565 TATTAATTAT
1 TA-TAATTAT
86575 TTATTAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
9 12 0.36
10 6 0.18
11 13 0.39
12 2 0.06
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (10 bp):
TATAATTATA
Found at i:86549 original size:20 final size:22
Alignment explanation
Indices: 86501--86554 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 22
86491 AACATAATAG
*
86501 TATAATAATT-TATTACTATAC
1 TATAATAATTATATTAATATAC
*
86522 TATTATAATTATATTAAT-TA-
1 TATAATAATTATATTAATATAC
86542 TATAATAATTATA
1 TATAATAATTATA
86555 ATACAATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 12 0.41
21 11 0.38
22 6 0.21
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (22 bp):
TATAATAATTATATTAATATAC
Found at i:86675 original size:29 final size:29
Alignment explanation
Indices: 86643--86713 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
86633 ATCTTGCTTA
86643 TAATATTACTATTAAAT--TATTATAATCTT
1 TAATATTACTATTAAATACTA-TATAAT-TT
*
86672 TAATAATTA-TATTAAATACTATATTATTT
1 TAAT-ATTACTATTAAATACTATATAATTT
86701 TAATATTAACTAT
1 TAATATT-ACTAT
86714 ATTTATTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
28 3 0.08
29 19 0.53
30 12 0.33
31 2 0.06
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.51
Consensus pattern (29 bp):
TAATATTACTATTAAATACTATATAATTT
Found at i:86762 original size:34 final size:33
Alignment explanation
Indices: 86693--86762 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 33
86683 TTAAATACTA
* *
86693 TATTATTTTAATATTAACTATATTTATTATTAT
1 TATTATTTTAATAGTAACTATATTTATTATAAT
* *
86726 TATTATTTATAATAGTAATTTTA-TTAGTTATAAT
1 TATTATTT-TAATAGTAACTATATTTA-TTATAAT
86760 TAT
1 TAT
86763 AAAAATTATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
33 11 0.35
34 20 0.65
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (33 bp):
TATTATTTTAATAGTAACTATATTTATTATAAT
Found at i:87519 original size:11 final size:11
Alignment explanation
Indices: 87503--87561 Score: 70
Period size: 11 Copynumber: 5.6 Consensus size: 11
87493 AATAATCAAT
87503 TTATATAATTA
1 TTATATAATTA
87514 TTATATAATTA
1 TTATATAATTA
87525 TTA-AT-ATTA
1 TTATATAATTA
*
87534 TTATATAATAA
1 TTATATAATTA
* *
87545 TAATA-AAATA
1 TTATATAATTA
87555 TTATATA
1 TTATATA
87562 TGATATTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 7 0.17
10 11 0.28
11 22 0.55
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
TTATATAATTA
Found at i:87658 original size:17 final size:17
Alignment explanation
Indices: 87608--87654 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 17
87598 TAATATAAAT
*
87608 TTATAATTTATAATAAG
1 TTATAATTAATAATAAG
87625 TTATTATATATAATAATAA-
1 TTA-TA-AT-TAATAATAAG
87644 TTATAATTAAT
1 TTATAATTAAT
87655 TAATTATATC
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 4 0.15
17 5 0.19
18 4 0.15
19 5 0.19
20 8 0.31
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
TTATAATTAATAATAAG
Found at i:87839 original size:30 final size:29
Alignment explanation
Indices: 87780--87876 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 29
87770 ATATACAAAT
* * *
87780 TATAATCTATTCAATAAATAATTATATTAA
1 TATAATTTATTTAATTAAT-ATTATATTAA
87810 TATAATTTATTTAATTAATATTATAATTAA
1 TATAATTTATTTAATTAATATTAT-ATTAA
* * *
87840 TATTA-TTAATTATCTTAGAT-TTATTATTAA
1 TATAATTTATTTA-ATTA-ATATTA-TATTAA
87870 TATAATT
1 TATAATT
87877 AAATTATTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
29 11 0.20
30 40 0.73
31 4 0.07
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (29 bp):
TATAATTTATTTAATTAATATTATATTAA
Found at i:87844 original size:18 final size:17
Alignment explanation
Indices: 87787--87852 Score: 54
Period size: 14 Copynumber: 4.1 Consensus size: 17
87777 AATTATAATC
87787 TATTCAATA-AATAATTA
1 TATT-AATATAATAATTA
87804 TATTAATATAAT--TTA
1 TATTAATATAATAATTA
87819 T-TTAAT-TAAT-ATTA
1 TATTAATATAATAATTA
*
87833 TAATTAATATTATTAATTA
1 T-ATTAATA-TAATAATTA
87852 T
1 T
87853 CTTAGATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
13 4 0.10
14 9 0.22
15 4 0.10
16 9 0.22
17 7 0.17
18 3 0.07
19 5 0.12
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTAATATAATAATTA
Found at i:87847 original size:21 final size:19
Alignment explanation
Indices: 87793--87894 Score: 68
Period size: 18 Copynumber: 5.3 Consensus size: 19
87783 AATCTATTCA
*
87793 ATAAATAATTATATTA-A-T
1 ATAATTAATT-TATTATATT
*
87811 ATAATTTATTTAATTAATATT
1 ATAATTAATTT-ATT-ATATT
87832 ATAATTAATATTATTA-ATT
1 ATAATTAAT-TTATTATATT
* *
87851 AT-CTTAGATTTATTATTAAT
1 ATAATTA-ATTTATTA-TATT
* *
87871 ATAATTAAATTATTTTATT
1 ATAATTAATTTATTATATT
87890 ATAAT
1 ATAAT
87895 ATTATTCTAT
Statistics
Matches: 66, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
17 1 0.02
18 20 0.30
19 16 0.24
20 12 0.18
21 15 0.23
22 2 0.03
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (19 bp):
ATAATTAATTTATTATATT
Found at i:87878 original size:30 final size:31
Alignment explanation
Indices: 87800--87883 Score: 86
Period size: 30 Copynumber: 2.8 Consensus size: 31
87790 TCAATAAATA
*
87800 ATTA-TATTAATATAATTTATT-TAATTAAT
1 ATTATTATTAATATAATTAATTATAATTAAT
* * *
87829 ATTATAATTAATATTATTAATTAT-CTTAGAT
1 ATTATTATTAATATAATTAATTATAATTA-AT
87860 -TTATTATTAATATAATTAAATTAT
1 ATTATTATTAATATAATT-AATTAT
87884 TTTATTATAA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
29 4 0.09
30 32 0.71
31 9 0.20
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (31 bp):
ATTATTATTAATATAATTAATTATAATTAAT
Found at i:87885 original size:24 final size:24
Alignment explanation
Indices: 87858--87949 Score: 68
Period size: 24 Copynumber: 4.0 Consensus size: 24
87848 ATTATCTTAG
87858 ATTTATTATTAATATAATTAAATT
1 ATTTATTATTAATATAATTAAATT
* ** *
87882 ATTTTATTA-TAATATTATTCTATA
1 A-TTTATTATTAATATAATTAAATT
* *
87906 ATTTATTATCAATA-AACT-AA-T
1 ATTTATTATTAATATAATTAAATT
* *
87927 ACTTATTATTAAT-TAAATAAATT
1 ATTTATTATTAATATAATTAAATT
87950 TAAAATTAAT
Statistics
Matches: 51, Mismatches: 12, Indels: 11
0.69 0.16 0.15
Matches are distributed among these distances:
21 14 0.27
22 3 0.06
23 10 0.20
24 17 0.33
25 7 0.14
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (24 bp):
ATTTATTATTAATATAATTAAATT
Found at i:87898 original size:30 final size:29
Alignment explanation
Indices: 87803--87898 Score: 72
Period size: 30 Copynumber: 3.2 Consensus size: 29
87793 ATAAATAATT
* *
87803 ATATTAATATAATTTATTTAATTAATATTAT-
1 ATATTAATATAA-TTAATT-ATT-TTATTATA
* *
87834 A-ATTAATATTATTAATTATCTTAGATT-TA
1 ATATTAATATAATTAATTAT-TT-TATTATA
*
87863 TTATTAATATAATTAAATTATTTTATTATA
1 ATATTAATATAATT-AATTATTTTATTATA
87893 ATATTA
1 ATATTA
87899 TTCTATAATT
Statistics
Matches: 51, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
28 3 0.06
29 12 0.24
30 29 0.57
31 7 0.14
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (29 bp):
ATATTAATATAATTAATTATTTTATTATA
Found at i:87972 original size:13 final size:15
Alignment explanation
Indices: 87954--87999 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
87944 TAAATTTAAA
87954 ATTAATA-AATTA-T
1 ATTAATATAATTATT
87967 ATTAATATTAATTATT
1 ATTAATA-TAATTATT
* *
87983 ATTAACATAATAATT
1 ATTAATATAATTATT
87998 AT
1 AT
88000 CATTATTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAATATAATTATT
Found at i:87993 original size:21 final size:22
Alignment explanation
Indices: 87969--88021 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
87959 TAAATTATAT
87969 TAATATTAATTATTATT-AACA
1 TAATATTAATTATTATTAAACA
*
87990 TAATAATT-ATCATTATTAAACA
1 TAAT-ATTAATTATTATTAAACA
88012 -AAT-TTAATTA
1 TAATATTAATTA
88022 AAAATATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 2 0.07
20 3 0.11
21 15 0.56
22 7 0.26
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATTAATTATTATTAAACA
Found at i:88047 original size:16 final size:15
Alignment explanation
Indices: 88026--88064 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
88016 TAATTAAAAA
*
88026 TATTATGATATTAAAT
1 TATTATAATATT-AAT
*
88042 TATTATAATATTCAT
1 TATTATAATATTAAT
88057 TATTATAA
1 TATTATAA
88065 AACATAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (15 bp):
TATTATAATATTAAT
Found at i:88164 original size:21 final size:21
Alignment explanation
Indices: 88140--88440 Score: 192
Period size: 21 Copynumber: 13.3 Consensus size: 21
88130 TTTAATTAAG
*
88140 TTTAAGACTCAAAGATTCTCA
1 TTTAAGACTTAAAGATTCTCA
*
88161 TTTAAAGATTTCTTAAATATTCTCA
1 TTT-AAGA---CTTAAAGATTCTCA
* *
88186 TTTATGA-TTCAAA-ATTTCTTA
1 TTTAAGACTT-AAAGA-TTCTCA
*
88207 TTTGAGGATTTCTTAAAGATTCTCA
1 TTT-AAGA---CTTAAAGATTCTCA
*
88232 TTTAAGACTTAAAGTTTCTCA
1 TTTAAGACTTAAAGATTCTCA
* *
88253 TTTCAGGATTTCTTAAAGATTTTCA
1 TTT-AAGA---CTTAAAGATTCTCA
* *
88278 TTTAAGACTCAAAGATTCTTA
1 TTTAAGACTTAAAGATTCTCA
* * *
88299 TTTGAGAATTTCTTGAAGATTCTTA
1 TTTAAG-A---CTTAAAGATTCTCA
*
88324 TTTAAGACTTAAAGATTCTTA
1 TTTAAGACTTAAAGATTCTCA
* *
88345 TTTAAGACTCAAAGATTCTTA
1 TTTAAGACTTAAAGATTCTCA
* *
88366 TTTATGACTCAAAGATTCTCA
1 TTTAAGACTTAAAGATTCTCA
88387 TTTGAAGATTTCTTAAAGATTCTCA
1 TTT-AAGA---CTTAAAGATTCTCA
* * *
88412 TTTATGACTCAAAGATTTTCA
1 TTTAAGACTTAAAGATTCTCA
88433 TTTGAAGA
1 TTT-AAGA
88441 TTTATTAATT
Statistics
Matches: 226, Mismatches: 29, Indels: 49
0.74 0.10 0.16
Matches are distributed among these distances:
20 3 0.01
21 116 0.51
22 17 0.08
24 13 0.06
25 74 0.33
26 3 0.01
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.43
Consensus pattern (21 bp):
TTTAAGACTTAAAGATTCTCA
Found at i:88169 original size:14 final size:14
Alignment explanation
Indices: 88150--88189 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
88140 TTTAAGACTC
88150 AAAGATTCTCATTT
1 AAAGATTCTCATTT
88164 AAAGATT-TC--TT
1 AAAGATTCTCATTT
*
88175 AAATATTCTCATTT
1 AAAGATTCTCATTT
88189 A
1 A
88190 TGATTCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
11 8 0.36
12 2 0.09
13 2 0.09
14 10 0.45
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (14 bp):
AAAGATTCTCATTT
Found at i:88217 original size:46 final size:46
Alignment explanation
Indices: 88140--88448 Score: 360
Period size: 46 Copynumber: 6.8 Consensus size: 46
88130 TTTAATTAAG
* *
88140 TTTAAGACTCAAAGATTCTCATTTAAAGATTTCTTAAATATTCTCA
1 TTTAAGACTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCA
* * * *
88186 TTTATGATTCAAA-ATTTCTTATTTGAGGATTTCTTAAAGATTCTCA
1 TTTAAGACTCAAAGA-TTCTCATTTGAAGATTTCTTAAAGATTCTCA
* * * * *
88232 TTTAAGACTTAAAGTTTCTCATTTCAGGATTTCTTAAAGATTTTCA
1 TTTAAGACTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCA
* * *
88278 TTTAAGACTCAAAGATTCTTATTTG-AGAATTTCTTGAAGATTCTTA
1 TTTAAGACTCAAAGATTCTCATTTGAAG-ATTTCTTAAAGATTCTCA
* * * *
88324 TTTAAGACTTAAAGATTCTTATTT-AAGA---CTCAAAGATTCTTA
1 TTTAAGACTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCA
*
88366 TTTATGACTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCA
1 TTTAAGACTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCA
* * *
88412 TTTATGACTCAAAGATTTTCATTTGAAGATTTATTAA
1 TTTAAGACTCAAAGATTCTCATTTGAAGATTTCTTAA
88449 TTATATTTAA
Statistics
Matches: 224, Mismatches: 31, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
42 33 0.15
43 4 0.02
45 3 0.01
46 184 0.82
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (46 bp):
TTTAAGACTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCA
Found at i:88292 original size:67 final size:66
Alignment explanation
Indices: 88140--88440 Score: 240
Period size: 67 Copynumber: 4.4 Consensus size: 66
88130 TTTAATTAAG
* *
88140 TTTAAGACTCAAAGATTCTCATTTAAAGATTTCTTAAATATTCTCATTTATGA-TTC--AAA-AT
1 TTTAAGACTCAAAGATTCTCATTT-AAGA---CTTAAAGATTCTCATTTAAGATTTCTTAAAGAT
*
88201 TTCTTA
62 TT-TCA
* * * *
88207 TTTGAGGATTTCTTAAAGATTCTCATTTAAGACTTAAAGTTTCTCATTTCAGGATTTCTTAAAGA
1 TTT-AAGA---CTCAAAGATTCTCATTTAAGACTTAAAGATTCTCATTT-AAGATTTCTTAAAGA
88272 TTTTCA
61 TTTTCA
* * * *
88278 TTTAAGACTCAAAGATTCTTATTTGAGAATTTCTTGAAGATTCTTATTTAAGA---CTTAAAGAT
1 TTTAAGACTCAAAGATTCTCATTTAAG-A---CTTAAAGATTCTCATTTAAGATTTCTTAAAGAT
88340 TCTT-A
62 T-TTCA
* * * *
88345 TTTAAGACTCAAAGATTCTTATTTATGACTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTCT
1 TTTAAGACTCAAAGATTCTCATTTAAGACTTAAAGATTCTCATTT-AAGATTTCTTAAAGATTTT
88410 CA
65 CA
* *
88412 TTTATGACTCAAAGATTTTCATTTGAAGA
1 TTTAAGACTCAAAGATTCTCATTT-AAGA
88441 TTTATTAATT
Statistics
Matches: 190, Mismatches: 24, Indels: 39
0.75 0.09 0.15
Matches are distributed among these distances:
63 14 0.07
64 4 0.02
66 2 0.01
67 103 0.54
68 12 0.06
69 3 0.02
70 10 0.05
71 38 0.20
72 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.43
Consensus pattern (66 bp):
TTTAAGACTCAAAGATTCTCATTTAAGACTTAAAGATTCTCATTTAAGATTTCTTAAAGATTTTC
A
Found at i:88396 original size:14 final size:14
Alignment explanation
Indices: 88376--88415 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
88366 TTTATGACTC
88376 AAAGATTCTCATTT
1 AAAGATTCTCATTT
*
88390 GAAGATT-TC--TT
1 AAAGATTCTCATTT
88401 AAAGATTCTCATTT
1 AAAGATTCTCATTT
88415 A
1 A
88416 TGACTCAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 6
0.72 0.07 0.21
Matches are distributed among these distances:
11 8 0.38
12 2 0.10
13 2 0.10
14 9 0.43
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (14 bp):
AAAGATTCTCATTT
Found at i:89503 original size:185 final size:183
Alignment explanation
Indices: 89163--89512 Score: 430
Period size: 185 Copynumber: 1.9 Consensus size: 183
89153 AAATTTCATT
* * *
89163 TAAATTCTTCCACCATTTGGGATAAATTTAAAGAAATTTCTCACTTAGAGATTTCTTAGAAAATT
1 TAAATTATTCCACCATTTGGGACAAATTTAAAGAAATTTCTCACCTAGAGATTTCTTAGAAAATT
* * **
89228 TACCATTTGAAATTTCTAAGATTCTCATCCTTGGATAATTATCAAATATTTTCAACCAATTTTTT
66 TACCATTTGAAATTTCTAAAATTCTCATCATTGGATAATTATCAAATATTCCCAA-CAATTTTTT
*
89293 ATTTTTTATTTTTTGTTTGAAAATAAATATTAATTATTGTTGTTGAAACCTTATC
130 ATTTTTTATTTTTTCTTTGAAAAT-AATATTAATTATTGTTGTTGAAACCTTATC
89348 TAAATTATTCCACCATTTGGGACAAATTTAGACA-AAATTTCTCACCTAG-GAATTT-TATAG-A
1 TAAATTATTCCACCATTTGGGACAAATTTA-A-AGAAATTTCTCACCTAGAG-ATTTCT-TAGAA
**
89409 AATTTACCATTTGAAATTTCTATAAATTC-CATCATTGGATAATTAAT-ATTTATTCCCAA-AAT
62 AATTTACCATTTGAAATTTCTA-AAATTCTCATCATTGGATAATT-ATCAAATATTCCCAACAAT
*
89471 TTATTT-TTTTAATT-TTTTATTCTTTTAAAATAATATTAATTA
125 TT-TTTATTTT--TTATTTT-TTCTTTGAAAATAATATTAATTA
89513 ATTAATTAAT
Statistics
Matches: 144, Mismatches: 11, Indels: 21
0.82 0.06 0.12
Matches are distributed among these distances:
183 9 0.06
184 18 0.12
185 87 0.60
186 29 0.20
187 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.45
Consensus pattern (183 bp):
TAAATTATTCCACCATTTGGGACAAATTTAAAGAAATTTCTCACCTAGAGATTTCTTAGAAAATT
TACCATTTGAAATTTCTAAAATTCTCATCATTGGATAATTATCAAATATTCCCAACAATTTTTTA
TTTTTTATTTTTTCTTTGAAAATAATATTAATTATTGTTGTTGAAACCTTATC
Found at i:89729 original size:34 final size:31
Alignment explanation
Indices: 89668--89731 Score: 76
Period size: 34 Copynumber: 1.9 Consensus size: 31
89658 TTTTATTTAA
89668 TATATTAAATTATAAATAATTAGATAATATCT
1 TATATTAAATTATAAATAATTA-ATAATATCT
89700 TATATTAAATATTATAATAGTAATT-ATAATAT
1 TATATT-AA-ATTATAA-A-TAATTAATAATAT
89732 ATAATGATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
32 6 0.21
33 2 0.07
34 14 0.50
35 1 0.04
36 5 0.18
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (31 bp):
TATATTAAATTATAAATAATTAATAATATCT
Found at i:92015 original size:13 final size:13
Alignment explanation
Indices: 91997--92034 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
91987 ATACTATGTA
91997 AATTATATAATAT
1 AATTATATAATAT
92010 AATTATATGAATAT
1 AATTATAT-AATAT
92024 -ATTATA-AATAT
1 AATTATATAATAT
92035 TAAATTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.21
13 14 0.58
14 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (13 bp):
AATTATATAATAT
Found at i:92317 original size:24 final size:24
Alignment explanation
Indices: 92272--92318 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
92262 AAATTTAATA
*
92272 TTAATAAATATTTAAATAATATAC
1 TTAATAAATAGTTAAATAATATAC
*
92296 TTAAT-AATAGTTAATATTATATA
1 TTAATAAATAGTTAA-ATAATATA
92319 TATAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (24 bp):
TTAATAAATAGTTAAATAATATAC
Found at i:93573 original size:25 final size:25
Alignment explanation
Indices: 93544--93610 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
93534 AAAATTACTA
93544 ATATTTTAAAAATATTATAATTATT
1 ATATTTTAAAAATATTATAATTATT
* *
93569 ATATTATAATAATA-T-TAATTATT
1 ATATTTTAAAAATATTATAATTATT
* *
93592 AGTAATATTATAAATATTA
1 A-T-ATTTTAAAAATATTA
93611 ATATTATAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
23 9 0.28
24 2 0.06
25 20 0.62
26 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (25 bp):
ATATTTTAAAAATATTATAATTATT
Found at i:93597 original size:16 final size:16
Alignment explanation
Indices: 93556--93603 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
93546 ATTTTAAAAA
93556 TATTATAATTATTATAT
1 TATTATAA-TATTATAT
*
93573 TATAATAATATTA-AT
1 TATTATAATATTATAT
93588 TATTAGTAATATTATA
1 TATTA-TAATATTATA
93604 AATATTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.22
16 13 0.48
17 8 0.30
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
TATTATAATATTATAT
Found at i:93727 original size:13 final size:14
Alignment explanation
Indices: 93694--93741 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 14
93684 TATTAAATTG
93694 TTAATAATAAATAA
1 TTAATAATAAATAA
93708 TCATAATAATAAA-AA
1 T--TAATAATAAATAA
*
93723 TTAATCAGTAAATAA
1 TTAAT-AATAAATAA
93738 TTAA
1 TTAA
93742 ATGTTATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
13 4 0.14
14 6 0.21
15 9 0.31
16 10 0.34
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (14 bp):
TTAATAATAAATAA
Found at i:93735 original size:44 final size:45
Alignment explanation
Indices: 93649--93735 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 45
93639 AATTACTAGT
* * * * * *
93649 TTAATAATAATATAATAATACTAATTACAATTTATTATTAAATTG
1 TTAATAATAATATAATAATAATAATAAAAATTAATCAGTAAATTG
*
93694 TTAATAATAA-ATAATCATAATAATAAAAATTAATCAGTAAAT
1 TTAATAATAATATAATAATAATAATAAAAATTAATCAGTAAAT
93736 AATTAAATGT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
44 25 0.71
45 10 0.29
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (45 bp):
TTAATAATAATATAATAATAATAATAAAAATTAATCAGTAAATTG
Found at i:94649 original size:27 final size:28
Alignment explanation
Indices: 94582--94649 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
94572 TTAAATATCT
94582 ATTAATTAATAAAAATCAATAATTAAAATA
1 ATTAA-TAAT-AAAATCAATAATTAAAATA
* * * *
94612 TTTAA-ATTAAAATCAAT-ATTCAGATA
1 ATTAATAATAAAATCAATAATTAAAATA
94638 ATTAATAATAAA
1 ATTAATAATAAA
94650 TTATAAGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 11 0.35
27 14 0.45
28 2 0.06
30 4 0.13
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.35
Consensus pattern (28 bp):
ATTAATAATAAAATCAATAATTAAAATA
Found at i:94650 original size:26 final size:27
Alignment explanation
Indices: 94584--94650 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
94574 AAATATCTAT
94584 TAATTAATAA-AAATCAATAATTAAAA
1 TAATTAATAATAAATCAATAATTAAAA
* * * *
94610 TATTTAA-ATTAAAATCAAT-ATTCAGA
1 TAATTAATAAT-AAATCAATAATTAAAA
94636 TAATTAATAATAAAT
1 TAATTAATAATAAAT
94651 TATAAGTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
25 1 0.03
26 21 0.66
27 10 0.31
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.36
Consensus pattern (27 bp):
TAATTAATAATAAATCAATAATTAAAA
Found at i:94669 original size:23 final size:25
Alignment explanation
Indices: 94640--94689 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
94630 TTCAGATAAT
*
94640 TAATAATAAATT-A-TAAGTATTTA
1 TAATAATAAATTAATTAAATATTTA
*
94663 TAATAATAATTTAATTAAATATTTA
1 TAATAATAAATTAATTAAATATTTA
94688 TA
1 TA
94690 TTTTAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.48
24 1 0.04
25 11 0.48
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
TAATAATAAATTAATTAAATATTTA
Found at i:94765 original size:22 final size:21
Alignment explanation
Indices: 94740--94824 Score: 63
Period size: 19 Copynumber: 4.0 Consensus size: 21
94730 CGATTAATCC
94740 TTAAATATTAATCTAATTCATT
1 TTAAATATTAATC-AATTCATT
* *
94762 TTAAAT-TTAATAGAAATAGCATT
1 TTAAATATTAAT--CAAT-TCATT
*
94785 TTAAATTAATAA-CAATT-ATT
1 TTAAA-TATTAATCAATTCATT
94805 TTAAATATTAA-CAATT-ATT
1 TTAAATATTAATCAATTCATT
94824 T
1 T
94825 ATATTTAATT
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
19 14 0.27
20 8 0.15
21 5 0.10
22 12 0.23
23 9 0.17
24 1 0.02
25 3 0.06
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (21 bp):
TTAAATATTAATCAATTCATT
Found at i:94818 original size:19 final size:20
Alignment explanation
Indices: 94782--94824 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
94772 TAGAAATAGC
94782 ATTTTAAATTAATAACAATT
1 ATTTTAAATTAATAACAATT
*
94802 ATTTTAAA-TATTAACAATT
1 ATTTTAAATTAATAACAATT
94821 ATTT
1 ATTT
94825 ATATTTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTTAAATTAATAACAATT
Found at i:95770 original size:17 final size:17
Alignment explanation
Indices: 95728--95771 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
95718 TATTTATTAA
*
95728 TATTATAAATATATATT
1 TATTATTAATATATATT
95745 TAATT-TTAATATATATT
1 T-ATTATTAATATATATT
95762 TATTATTAAT
1 TATTATTAAT
95772 TATTAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 3 0.12
17 18 0.75
18 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTATTAATATATATT
Done.