Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168337.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_56, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 149304
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
File 3 of 4
Found at i:95982 original size:18 final size:17
Alignment explanation
Indices: 95957--95990 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
95947 TATTAGTTTT
*
95957 GATAATATTATTAATAC
1 GATAATATTATAAATAC
95974 GATATATATTATAAATA
1 GATA-ATATTATAAATA
95991 TTTATTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (17 bp):
GATAATATTATAAATAC
Found at i:96118 original size:26 final size:25
Alignment explanation
Indices: 96071--96120 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
96061 ATAATATAAT
*
96071 ATTAATAATAGATTAATTAATTAAA
1 ATTAATAATAGATTAATAAATTAAA
96096 ATTAATAAATAGATTTAA-AAATTAA
1 ATTAAT-AATAGA-TTAATAAATTAA
96121 TAAAGTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 6 0.27
26 12 0.55
27 4 0.18
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (25 bp):
ATTAATAATAGATTAATAAATTAAA
Found at i:96695 original size:19 final size:19
Alignment explanation
Indices: 96668--96706 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
96658 ATTGTTCAAA
*
96668 TAGTAATAACTATTTGAAC
1 TAGTAATAACTATTTAAAC
* *
96687 TAGTCATAATTATTTAAAC
1 TAGTAATAACTATTTAAAC
96706 T
1 T
96707 TGTTTGGTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (19 bp):
TAGTAATAACTATTTAAAC
Found at i:98172 original size:20 final size:19
Alignment explanation
Indices: 98142--98214 Score: 58
Period size: 21 Copynumber: 3.6 Consensus size: 19
98132 AGCCTTACCC
98142 GATCGATTCCCTCCTTGAGGG
1 GATCGA-TCCCTCCTTG-GGG
*
98163 GATCGATCCCTTGCC-TGGGT
1 GATCGATCCC-T-CCTTGGGG
**
98183 GATCGATCCCTTATGTGGGGG
1 GATCGATCCCTCCT-T-GGGG
98204 GATCGATCCCT
1 GATCGATCCCT
98215 TTTCTGCATT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 1 0.02
20 17 0.40
21 23 0.53
22 2 0.05
ACGTcount: A:0.14, C:0.27, G:0.30, T:0.29
Consensus pattern (19 bp):
GATCGATCCCTCCTTGGGG
Found at i:98209 original size:21 final size:20
Alignment explanation
Indices: 98160--98215 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
98150 CCCTCCTTGA
*
98160 GGGGATCGATCCCTTGCCTG
1 GGGGATCGATCCCTTACCTG
* **
98180 GGTGATCGATCCCTTATGTGG
1 GGGGATCGATCCCTTACCT-G
98201 GGGGATCGATCCCTT
1 GGGGATCGATCCCTT
98216 TTCTGCATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.12, C:0.25, G:0.34, T:0.29
Consensus pattern (20 bp):
GGGGATCGATCCCTTACCTG
Found at i:99018 original size:23 final size:23
Alignment explanation
Indices: 98991--99039 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
98981 TAACATATTA
98991 ATATAA-TATTATTATATAAGATT
1 ATATAATTATTATTATATAAG-TT
* *
99014 ATATAATTGTTATTATATTAGTT
1 ATATAATTATTATTATATAAGTT
99037 ATA
1 ATA
99040 ATTGATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (23 bp):
ATATAATTATTATTATATAAGTT
Found at i:100233 original size:27 final size:28
Alignment explanation
Indices: 100193--100254 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
100183 TACAAATAAT
100193 ATATAATATATATTTATA-TATTTGAATA
1 ATATAATATATATTT-TACTATTTGAATA
*
100221 ATATAATAT-TATTTTACTATTTGATTA
1 ATATAATATATATTTTACTATTTGAATA
100248 AT-TAATA
1 ATATAATA
100255 ATTGTTGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 7 0.22
27 16 0.50
28 9 0.28
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (28 bp):
ATATAATATATATTTTACTATTTGAATA
Found at i:100348 original size:18 final size:18
Alignment explanation
Indices: 100325--100377 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
100315 TTAATTTATC
100325 ATTAATTTTATAATATTA
1 ATTAATTTTATAATATTA
* *
100343 ATTAATTATAAAATATT-
1 ATTAATTTTATAATATTA
*
100360 A-TAATACTTATAATATTA
1 ATTAAT-TTTATAATATTA
100378 TAAGTAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 4 0.14
17 9 0.32
18 15 0.54
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAATTTTATAATATTA
Found at i:100376 original size:17 final size:17
Alignment explanation
Indices: 100332--100385 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
100322 ATCATTAATT
*
100332 TTATAATATTA-ATTAA
1 TTATAATATTATAATAA
*
100348 TTATAAAATATTATAATAC
1 TTAT--AATATTATAATAA
100367 TTATAATATTATAAGTAA
1 TTATAATATTATAA-TAA
100385 T
1 T
100386 ATTATTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 4 0.13
17 10 0.32
18 10 0.32
19 7 0.23
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (17 bp):
TTATAATATTATAATAA
Found at i:100813 original size:16 final size:16
Alignment explanation
Indices: 100792--100885 Score: 61
Period size: 16 Copynumber: 5.7 Consensus size: 16
100782 TAATTAAATA
100792 ATTATAAATATTATAT
1 ATTATAAATATTATAT
*
100808 ATTATACTTATATT-TAT
1 ATTATA--AATATTATAT
* * *
100825 AATATAAAT-TAATAA
1 ATTATAAATATTATAT
100840 ATTATATAATTACTTATA-
1 ATTATA-AA-TA-TTATAT
100858 ATTATAAATAATTATAT
1 ATTATAAAT-ATTATAT
100875 -TTATTAAATAT
1 ATTA-TAAATAT
100886 ATAAATAGAT
Statistics
Matches: 61, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
14 1 0.02
15 9 0.15
16 19 0.31
17 17 0.28
18 11 0.18
19 4 0.07
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTATAAATATTATAT
Found at i:100841 original size:51 final size:50
Alignment explanation
Indices: 100764--100863 Score: 116
Period size: 51 Copynumber: 2.0 Consensus size: 50
100754 TTTCAATTAG
100764 TTATATTAATAATAATAATAATTAAATAATTATAAATA-TTATATATTATAC
1 TTATATTAATAATAATAATAATTAAATAA-TATAAATACTTATA-ATTATAC
* * *
100815 TTATATTTATAAT-ATAAATTAA-TAAATTATATAATTACTTATAATTATA
1 TTATATTAATAATAAT-AA-TAATTAAATAATATAAATACTTATAATTATA
100864 AATAATTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
50 15 0.35
51 25 0.58
52 3 0.07
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (50 bp):
TTATATTAATAATAATAATAATTAAATAATATAAATACTTATAATTATAC
Found at i:101231 original size:21 final size:22
Alignment explanation
Indices: 101207--101252 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
101197 TTATTAGTTA
*
101207 TAAATCTAATTATATTT-ATTT
1 TAAATATAATTATATTTAATTT
* *
101228 TAAATATTATTTTATTTAATTT
1 TAAATATAATTATATTTAATTT
101250 TAA
1 TAA
101253 TAATCAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TAAATATAATTATATTTAATTT
Found at i:101476 original size:28 final size:30
Alignment explanation
Indices: 101420--101480 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
101410 AATTATTATT
101420 TAATAATAATTATTATAATAATACTAAATAA
1 TAATAATAATTATTATAATAATAC-AAATAA
* *
101451 TAATAAT-ATTATTATTATTATA-AAATAA
1 TAATAATAATTATTATAATAATACAAATAA
101479 TA
1 TA
101481 TTAAATCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 8 0.29
30 13 0.46
31 7 0.25
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (30 bp):
TAATAATAATTATTATAATAATACAAATAA
Found at i:102216 original size:7 final size:7
Alignment explanation
Indices: 102197--102234 Score: 67
Period size: 7 Copynumber: 5.3 Consensus size: 7
102187 ATATAATTAA
102197 ATTAAATT
1 ATTAAA-T
102205 ATTAAAT
1 ATTAAAT
102212 ATTAAAT
1 ATTAAAT
102219 ATTAAAT
1 ATTAAAT
102226 ATTAAAT
1 ATTAAAT
102233 AT
1 AT
102235 CCTAAATGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 24 0.80
8 6 0.20
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
ATTAAAT
Found at i:103834 original size:85 final size:84
Alignment explanation
Indices: 103730--103900 Score: 190
Period size: 85 Copynumber: 2.0 Consensus size: 84
103720 TATTAAATAT
* * * * *
103730 ATTTTTACTAGTTATATTTAATACTATAAT-ATATATTA-ATTTTAAATATTAAATCTAATTTAT
1 ATTTTTACTAGTTATATTTAAAACTAAAATAAT-TATTATA-ATTAAATAAT-AATCTAATTTAA
103793 TTAT-ATAATTAAAATTAATTAAA
63 TTATAAT-A-TAAAATTAATTAAA
*
103816 ATTTTTACTTA-TTA-ATTTAAAATTAAAATAATTATTATAATTAAATAATAATCTAATTTAATT
1 ATTTTTAC-TAGTTATATTTAAAACTAAAATAATTATTATAATTAAATAATAATCTAATTTAATT
*
103879 ATAATATATAATTAATTAAA
65 ATAATATAAAATTAATTAAA
103899 AT
1 AT
103901 ATAATATAAA
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
83 15 0.20
84 16 0.22
85 27 0.36
86 14 0.19
87 2 0.03
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.49
Consensus pattern (84 bp):
ATTTTTACTAGTTATATTTAAAACTAAAATAATTATTATAATTAAATAATAATCTAATTTAATTA
TAATATAAAATTAATTAAA
Found at i:103893 original size:17 final size:17
Alignment explanation
Indices: 103851--103903 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
103841 AAATAATTAT
103851 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
*
103867 TCTAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
103885 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
103902 TA
1 TA
103904 ATATAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 4 0.13
17 17 0.55
18 5 0.16
19 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TATAATTAATTATAATA
Found at i:103894 original size:22 final size:22
Alignment explanation
Indices: 103843--103908 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
103833 TAAAATTAAA
103843 ATAATT-ATTATAATTA-AATA-
1 ATAATTAATT-TAATTATAATAT
103863 ATAATCTAATTTAATTATAATAT
1 ATAAT-TAATTTAATTATAATAT
* *
103886 ATAATTAATTAAAATATAATAT
1 ATAATTAATTTAATTATAATAT
103908 A
1 A
103909 AATATTTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.12
21 7 0.17
22 23 0.57
23 5 0.12
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
ATAATTAATTTAATTATAATAT
Found at i:104056 original size:13 final size:13
Alignment explanation
Indices: 104040--104064 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104030 AATACAAATA
104040 AATCTAATTATTT
1 AATCTAATTATTT
104053 AATCTAATTATT
1 AATCTAATTATT
104065 AAATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:104940 original size:18 final size:18
Alignment explanation
Indices: 104917--105067 Score: 53
Period size: 18 Copynumber: 8.1 Consensus size: 18
104907 ATTTGGCTAT
104917 TATAATTTAATATATTAA
1 TATAATTTAATATATTAA
104935 TATAATTTTAAT-T-TTAA
1 TATAA-TTTAATATATTAA
* * *
104952 -ACTAATAGTCATATATTAG
1 TA-TAAT-TTAATATATTAA
* *
104971 T-TAATATTTATAATATTAT
1 TATAAT-TTAAT-ATATTAA
* * *
104990 TACAATTTATTATAATAA
1 TATAATTTAATATATTAA
*
105008 T-TAATTTATATAGTATCGT-G
1 TATAATTTA-ATA-TAT--TAA
* *
105028 TAATAATTTAATAAATTAT
1 T-ATAATTTAATATATTAA
*
105047 TATAATTAAATATTATTAA
1 TATAATTTAATA-TATTAA
105066 TA
1 TA
105068 ATATTTTATG
Statistics
Matches: 97, Mismatches: 20, Indels: 31
0.66 0.14 0.21
Matches are distributed among these distances:
16 2 0.02
17 16 0.16
18 34 0.35
19 28 0.29
20 6 0.06
21 4 0.04
22 7 0.07
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (18 bp):
TATAATTTAATATATTAA
Found at i:105076 original size:14 final size:15
Alignment explanation
Indices: 105035--105145 Score: 56
Period size: 14 Copynumber: 7.2 Consensus size: 15
105025 GTGTAATAAT
105035 TTAATAA-ATTATTA
1 TTAATAATATTATTA
105049 -TAATTAA-A-TATTA
1 TTAA-TAATATTATTA
105062 TTAATAATATT-TTA
1 TTAATAATATTATTA
* *
105076 TGAATGATATTAATTA
1 TTAATAATATT-ATTA
105092 TT-ATAATATGTAATTA
1 TTAATAATAT-T-ATTA
*
105108 -TAATTGTATATTATCTA
1 TTAA-T-AATATTAT-TA
105125 TTATATAATAATTATTTA
1 TTA-ATAAT-ATTA-TTA
105143 TTA
1 TTA
105146 TATGTTAGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 26
0.70 0.06 0.24
Matches are distributed among these distances:
13 11 0.14
14 20 0.26
15 8 0.11
16 13 0.17
17 6 0.08
18 16 0.21
19 2 0.03
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (15 bp):
TTAATAATATTATTA
Found at i:106809 original size:6 final size:6
Alignment explanation
Indices: 106800--106930 Score: 55
Period size: 6 Copynumber: 22.2 Consensus size: 6
106790 AACTATTAAT
* * *
106800 ATTATA A-T-TA ATTATA AGTTATA GTTAAA ATTAT- TTGATATA ATTAT-
1 ATTATA ATTATA ATTATA A-TTATA ATTATA ATTATA AT--TATA ATTATA
* * * *
106847 ATTTTA ATTTTA ATT-TA ATTATTA A-TATA ATTA-A GTTATTTT ATTATA
1 ATTATA ATTATA ATTATA ATTA-TA ATTATA ATTATA ATTA--TA ATTATA
* *
106895 AGTTATA ATAATA ATT-TA A-TATT ATTATA ATTATA A
1 A-TTATA ATTATA ATTATA ATTATA ATTATA ATTATA A
106931 AATTATGAAT
Statistics
Matches: 94, Mismatches: 15, Indels: 32
0.67 0.11 0.23
Matches are distributed among these distances:
4 4 0.04
5 24 0.26
6 45 0.48
7 17 0.18
8 4 0.04
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (6 bp):
ATTATA
Found at i:107828 original size:35 final size:35
Alignment explanation
Indices: 107788--107875 Score: 90
Period size: 35 Copynumber: 2.5 Consensus size: 35
107778 ATTTATTTAT
*
107788 ATAATTAAATTAAATAGTAATTTCAAAAGTT-TTAA
1 ATAATTAAATTAAATAGTAATTT-AAAAGTTAATAA
* * * *
107823 TTAATTTAATTACATA-TAATTTAAATGTTAATAA
1 ATAATTAAATTAAATAGTAATTTAAAAGTTAATAA
*
107857 AAAATTATAATTAAATAGT
1 ATAATTA-AATTAAATAGT
107876 TTAATATTAA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
33 6 0.15
34 13 0.32
35 21 0.51
36 1 0.02
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (35 bp):
ATAATTAAATTAAATAGTAATTTAAAAGTTAATAA
Found at i:109026 original size:16 final size:17
Alignment explanation
Indices: 108985--109036 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
108975 ATTATTTGTC
* * *
108985 TAATATAATTTTTATAC
1 TAATATAATGTATATAA
109002 TAATATAATGTATA-AA
1 TAATATAATGTATATAA
* *
109018 TAATTTAATTTATATAA
1 TAATATAATGTATATAA
109035 TA
1 TA
109037 TTACAATATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 13 0.45
17 16 0.55
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (17 bp):
TAATATAATGTATATAA
Found at i:109213 original size:32 final size:32
Alignment explanation
Indices: 109162--109232 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
109152 CTTTTATATT
* *
109162 ATATTATAAGTATACTTATAAT-TAATTAATA
1 ATATTATAAGTATACTTATAATGAAATAAATA
*
109193 ATTATTAT-AGTAATATTTATAATGAAATAAATA
1 A-TATTATAAGT-ATACTTATAATGAAATAAATA
109226 ATATTAT
1 ATATTAT
109233 TAATTTTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
31 4 0.12
32 22 0.65
33 8 0.24
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.45
Consensus pattern (32 bp):
ATATTATAAGTATACTTATAATGAAATAAATA
Found at i:109221 original size:29 final size:29
Alignment explanation
Indices: 109189--109259 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
109179 ATAATTAATT
*
109189 AATAATTATTA-TAGTAATATTTATA-ATGA
1 AATAATTAATATTAGTAAT-TTTATATAT-A
* *
109218 AATAAATAATATTATTAATTTTATATATA
1 AATAATTAATATTAGTAATTTTATATATA
*
109247 AATAATAAATATT
1 AATAATTAATATT
109260 GATATAATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 27 0.77
30 8 0.23
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (29 bp):
AATAATTAATATTAGTAATTTTATATATA
Found at i:109464 original size:19 final size:19
Alignment explanation
Indices: 109440--109478 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
109430 GCCTTCTCAA
109440 TTAAA-TATTTATATTATAT
1 TTAAATTATTTATA-TATAT
*
109459 TTAAATTATTTTTATATAT
1 TTAAATTATTTATATATAT
109478 T
1 T
109479 AATTAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAAATTATTTATATATAT
Found at i:110402 original size:181 final size:181
Alignment explanation
Indices: 110092--110541 Score: 464
Period size: 181 Copynumber: 2.5 Consensus size: 181
110082 GCCTATTTAG
* * *
110092 AATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTAGGAGATTTAAAAAATAAATA
1 AATAAAATAATACTAATCTAGTAATATTTGAAAAATTAATAACTAGGAGATTTAAAAAATAAATA
* * * * * *
110157 TGTTTATTGAATCAATTCAAATAGTTATGACTATTTAAACAATTATATATTTTCAATTGTTATGA
66 TGTTTACTAAACCAATTCAAATAGTTAAGACTATATAAACAATTATATATTTTCAATCGTTATGA
110222 CCTTTTGTTTTGTCATAAAGTAATTATTTATCTTCATGCAAGCTTATTTGA
131 CCTTTTGTTTTGTCATAAAGTAATTATTTATCTTCATGCAAGCTTATTTGA
* *
110273 AATAAAATAATACTAATCTAGTAATATTATG-AAATTTAATAACT-GATAGATTTAAAAAATAAA
1 AATAAAATAATACTAATCTAGTAATATT-TGAAAAATTAATAACTAG-GAGATTTAAAAAATAAA
* * * * *
110336 TTTGTTTACTAAACCAATTCAAATAGTTAAGGCTATATGAATAATTATCTA-TTTCAAATCGTTA
64 TATGTTTACTAAACCAATTCAAATAGTTAAGACTATATAAACAATTATATATTTTC-AATCGTTA
* * ** * * * * ** * **
110400 TGACTTTTTGTTTTGTCGTAAAACAAATGTTTTTGTTCATATAAGTTTATTCAA
128 TGACCTTTTGTTTTGTCATAAAGTAATTATTTATCTTCATGCAAGCTTATTTGA
* * * * * *
110454 AATAAAATAATATTAATTTATTAATATTTCAAAAATTAAT-A--A-GAGATTTAATAAATAAATC
1 AATAAAATAATACTAATCTAGTAATATTTGAAAAATTAATAACTAGGAGATTTAAAAAATAAATA
* * * * *
110515 TATTTACTATACTAGTTCAATTAGTTA
66 TGTTTACTAAACCAATTCAAATAGTTA
110542 TAACAATTTG
Statistics
Matches: 222, Mismatches: 42, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
177 38 0.17
180 7 0.03
181 175 0.79
182 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (181 bp):
AATAAAATAATACTAATCTAGTAATATTTGAAAAATTAATAACTAGGAGATTTAAAAAATAAATA
TGTTTACTAAACCAATTCAAATAGTTAAGACTATATAAACAATTATATATTTTCAATCGTTATGA
CCTTTTGTTTTGTCATAAAGTAATTATTTATCTTCATGCAAGCTTATTTGA
Found at i:110923 original size:9 final size:8
Alignment explanation
Indices: 110873--110924 Score: 50
Period size: 8 Copynumber: 6.1 Consensus size: 8
110863 AATAATAAGT
110873 ATATTATA
1 ATATTATA
*
110881 TTATATTATC
1 --ATATTATA
*
110891 ATATTTTA
1 ATATTATA
*
110899 ATATAATA
1 ATATTATA
110907 ATATTATA
1 ATATTATA
110915 ATAATTATA
1 AT-ATTATA
110924 A
1 A
110925 AATAAATATA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
8 21 0.60
9 7 0.20
10 7 0.20
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATTATA
Found at i:111008 original size:17 final size:16
Alignment explanation
Indices: 110979--111017 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
110969 TATAATATAA
110979 TAATAATTAATTAAGAT
1 TAAT-ATTAATTAAGAT
*
110996 TAATATTATATTAATAT
1 TAATATTA-ATTAAGAT
111013 TAATA
1 TAATA
111018 AGTAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (16 bp):
TAATATTAATTAAGAT
Found at i:111051 original size:41 final size:42
Alignment explanation
Indices: 110975--111061 Score: 119
Period size: 41 Copynumber: 2.1 Consensus size: 42
110965 AAACTATAAT
*
110975 ATAA-TAATAATTAATTAAGATTAATATTATATTAATA-TTA
1 ATAAGTAATAATTAAATAAGATTAATATTATATTAATATTTA
111015 ATAAGTAATAATTAAAT-AGATT-ATATTATATTTTAATATTTA
1 ATAAGTAATAATTAAATAAGATTAATATTATA--TTAATATTTA
111057 ATAAG
1 ATAAG
111062 GATTTTAATA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
39 8 0.19
40 9 0.21
41 17 0.40
42 8 0.19
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.45
Consensus pattern (42 bp):
ATAAGTAATAATTAAATAAGATTAATATTATATTAATATTTA
Found at i:111468 original size:18 final size:18
Alignment explanation
Indices: 111428--111471 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
111418 TTTTATTTAT
*
111428 ATTAATTAACATTTAATA
1 ATTAATTAACATTGAATA
* * *
111446 TTTAATTAATATTGATTA
1 ATTAATTAACATTGAATA
111464 ATTAATTA
1 ATTAATTA
111472 TAATAAAAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
ATTAATTAACATTGAATA
Found at i:112108 original size:23 final size:24
Alignment explanation
Indices: 112064--112109 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
112054 TATAATTTAA
*
112064 TAAATTTATATAATTATGTAATAT
1 TAAATTTATATAATTATATAATAT
*
112088 TAAATTTAT-TACTTATATAATA
1 TAAATTTATATAATTATATAATA
112110 ATTTCTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (24 bp):
TAAATTTATATAATTATATAATAT
Found at i:112151 original size:23 final size:24
Alignment explanation
Indices: 112125--112185 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
112115 TTTAAATTTT
*
112125 AAATTATATTTGTTTCA-AATTAA
1 AAATTATATTTATTTCATAATTAA
* * *
112148 AAATAATATTTATTTGATAATTCA
1 AAATTATATTTATTTCATAATTAA
*
112172 AAATTAAATTTATT
1 AAATTATATTTATT
112186 GATAAATAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
23 14 0.45
24 17 0.55
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (24 bp):
AAATTATATTTATTTCATAATTAA
Found at i:112174 original size:24 final size:24
Alignment explanation
Indices: 112125--112190 Score: 66
Period size: 23 Copynumber: 2.8 Consensus size: 24
112115 TTTAAATTTT
* * *
112125 AAATTATATTTGTTTCA-AATTAA
1 AAATAATATTTATTTGATAATTAA
112148 AAATAATATTTATTTGATAATTCAA
1 AAATAATATTTATTTGATAATT-AA
*
112173 AATTAA-ATTTA-TTGATAA
1 AAATAATATTTATTTGATAA
112191 ATAATTAAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 21 0.57
24 9 0.24
25 7 0.19
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (24 bp):
AAATAATATTTATTTGATAATTAA
Found at i:112433 original size:18 final size:19
Alignment explanation
Indices: 112398--112435 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
112388 ATAAATAATT
* *
112398 ACTTATAATTAGTTTATTA
1 ACTTATAATAAGTATATTA
112417 ACTTAT-ATAAGTATATTA
1 ACTTATAATAAGTATATTA
112435 A
1 A
112436 TAATTCCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
ACTTATAATAAGTATATTA
Found at i:114018 original size:13 final size:14
Alignment explanation
Indices: 113991--114038 Score: 55
Period size: 13 Copynumber: 3.4 Consensus size: 14
113981 AATTATTTTA
*
113991 ATAATTATTATATT
1 ATAATTATAATATT
114005 ATAATTA-AATATT
1 ATAATTATAATATT
114018 AT-ATTATAATAAGTT
1 ATAATTATAAT-A-TT
114033 ATAATT
1 ATAATT
114039 TTTAAATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
12 4 0.14
13 10 0.34
14 8 0.28
15 4 0.14
16 3 0.10
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (14 bp):
ATAATTATAATATT
Found at i:114079 original size:18 final size:18
Alignment explanation
Indices: 113988--114081 Score: 57
Period size: 18 Copynumber: 5.6 Consensus size: 18
113978 ATAAATTATT
113988 TTAAT-AATTATTATATTA
1 TTAATAAATTATTA-ATTA
114006 -TAATTAAA-TATTATATTA
1 TTAA-TAAATTATTA-ATTA
*
114024 -TAATAAGTTA-TAATT-
1 TTAATAAATTATTAATTA
114039 TT--TAAATTA-T-A-TA
1 TTAATAAATTATTAATTA
*
114052 TAACATAAATTATTAATTA
1 TTA-ATAAATTATTAATTA
114071 TTAATAAATTA
1 TTAATAAATTA
114082 ATAAAATAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 22
0.70 0.05 0.25
Matches are distributed among these distances:
12 1 0.02
13 2 0.03
14 7 0.11
16 11 0.18
17 9 0.15
18 25 0.41
19 6 0.10
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (18 bp):
TTAATAAATTATTAATTA
Found at i:114137 original size:36 final size:38
Alignment explanation
Indices: 114087--114158 Score: 98
Period size: 36 Copynumber: 1.9 Consensus size: 38
114077 AATTAATAAA
114087 ATAAATATATTTTATAATTATTAAT-TTA-TAATAGTATT
1 ATAAATATATTTTATAATTA--AATATTATTAATAGTATT
114125 ATAAAT-TA-TTTATAATTAAATATTATTAATAGTA
1 ATAAATATATTTTATAATTAAATATTATTAATAGTA
114159 CAATAAACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
34 3 0.09
35 3 0.09
36 18 0.56
37 2 0.06
38 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (38 bp):
ATAAATATATTTTATAATTAAATATTATTAATAGTATT
Found at i:114241 original size:22 final size:23
Alignment explanation
Indices: 114190--114248 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 23
114180 TTATAATTGG
* * *
114190 ATATTAATTGTAAATAATTTATA
1 ATATTTATTATAAATAATTAATA
*
114213 ATA-TTATTATAAAT-ATTAATT
1 ATATTTATTATAAATAATTAATA
*
114234 ATATTTATTACAAAT
1 ATATTTATTATAAAT
114249 TAATAAAGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.27
22 19 0.63
23 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
ATATTTATTATAAATAATTAATA
Found at i:114311 original size:24 final size:21
Alignment explanation
Indices: 114279--114330 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 21
114269 AAGTTAAAGT
114279 TTATTTATGTTAAATATTATTAAG
1 TTATTTATG-T-AATA-TATTAAG
*
114303 TTATTTATGTATTATATTAAG
1 TTATTTATGTAATATATTAAG
114324 TTATTTA
1 TTATTTA
114331 CAATTATAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 14 0.52
22 3 0.11
23 1 0.04
24 9 0.33
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (21 bp):
TTATTTATGTAATATATTAAG
Found at i:114338 original size:20 final size:21
Alignment explanation
Indices: 114296--114338 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
114286 TGTTAAATAT
**
114296 TATTAAGTTATTTATGTATTA
1 TATTAAGTTATTTATCAATTA
114317 TATTAAGTTATTTA-CAATTA
1 TATTAAGTTATTTATCAATTA
114337 TA
1 TA
114339 ACTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.53
Consensus pattern (21 bp):
TATTAAGTTATTTATCAATTA
Found at i:114428 original size:23 final size:24
Alignment explanation
Indices: 114381--114496 Score: 71
Period size: 23 Copynumber: 4.8 Consensus size: 24
114371 TTTTTGTTTA
*
114381 TATAAATTATTTATTAATAATTAT
1 TATAAATTATTTATTAATAAATAT
114405 TATAAA-TATTTA-TAATCAAATATT
1 TATAAATTATTTATTAAT-AAATA-T
* *
114429 AATAATAAATATATTT-TT-ATAACTAA
1 --T-ATAAAT-TATTTATTAATAAATAT
* * *
114455 TATAACTTATAT-TTAATAAGTAT
1 TATAAATTATTTATTAATAAATAT
* *
114478 TATTAATTAATTATTAATA
1 TATAAATTATTTATTAATA
114497 TTATAATTAA
Statistics
Matches: 71, Mismatches: 11, Indels: 20
0.70 0.11 0.20
Matches are distributed among these distances:
22 10 0.14
23 29 0.41
24 14 0.20
26 1 0.01
27 9 0.13
28 2 0.03
29 6 0.08
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (24 bp):
TATAAATTATTTATTAATAAATAT
Found at i:114440 original size:13 final size:13
Alignment explanation
Indices: 114406--114440 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
114396 AATAATTATT
*
114406 ATAAATATTTATA
1 ATAAATATTAATA
114419 ATCAAATATTAATA
1 AT-AAATATTAATA
114433 ATAAATAT
1 ATAAATAT
114441 ATTTTTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAAATATTAATA
Found at i:114540 original size:32 final size:29
Alignment explanation
Indices: 114468--114544 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
114458 AACTTATATT
* *
114468 TAATAAGTATTATTAATTAATTATTAATA
1 TAATAAGTAATATTAATTAATTAATAATA
* * *
114497 TTATAATTAATATTAATTATTTAATAGTATA
1 TAATAAGTAATATTAATTAATTAATA--ATA
114528 TAATTAAGTAATATTAA
1 TAA-TAAGTAATATTAA
114545 AATTATTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 21 0.55
31 5 0.13
32 12 0.32
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (29 bp):
TAATAAGTAATATTAATTAATTAATAATA
Found at i:115233 original size:12 final size:12
Alignment explanation
Indices: 115216--115253 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
115206 TTAATAAGCA
*
115216 ATTATAATTATT
1 ATTATAATTAAT
115228 ATTATAA-TAAT
1 ATTATAATTAAT
115239 ATTAGTAATTAAT
1 ATTA-TAATTAAT
115252 AT
1 AT
115254 GAAATAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 7 0.30
12 10 0.43
13 6 0.26
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (12 bp):
ATTATAATTAAT
Found at i:115456 original size:22 final size:22
Alignment explanation
Indices: 115424--115466 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
115414 TATAAACGAT
*
115424 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
115446 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
115467 TATCTTAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:115601 original size:10 final size:10
Alignment explanation
Indices: 115584--115641 Score: 64
Period size: 10 Copynumber: 5.8 Consensus size: 10
115574 ATAATTAAAA
115584 ATTATATAATT
1 ATTA-ATAATT
* *
115595 ATTTATACTT
1 ATTAATAATT
* *
115605 ATTAATTATA
1 ATTAATAATT
115615 ATT-ATAATT
1 ATTAATAATT
115624 ATTAATAATT
1 ATTAATAATT
115634 ATTAATAA
1 ATTAATAA
115642 CTAATTAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
9 7 0.18
10 28 0.74
11 3 0.08
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTAATAATT
Found at i:115625 original size:19 final size:17
Alignment explanation
Indices: 115583--115629 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
115573 AATAATTAAA
115583 AATTATATAATTATTTAT
1 AATTAT-TAATTATTTAT
*
115601 ACTTATTAATTATAATTAT
1 AATTATTAATTAT--TTAT
115620 AATTATTAAT
1 AATTATTAAT
115630 AATTATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 7 0.28
18 5 0.20
19 13 0.52
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (17 bp):
AATTATTAATTATTTAT
Found at i:116180 original size:19 final size:20
Alignment explanation
Indices: 116122--116183 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 20
116112 GCTTTAAAAA
116122 ATTTATAAATACAAT-TTAT
1 ATTTATAAATACAATATTAT
** * **
116141 ATTTAT-TTTATAATAAAAT
1 ATTTATAAATACAATATTAT
116160 ATTTATAAATA-AATATTAT
1 ATTTATAAATACAATATTAT
116179 ATTTA
1 ATTTA
116184 ATCTATTTCT
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
18 5 0.16
19 25 0.78
20 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTTATAAATACAATATTAT
Found at i:117275 original size:6 final size:6
Alignment explanation
Indices: 117258--117349 Score: 54
Period size: 6 Copynumber: 15.5 Consensus size: 6
117248 ATCAAGTTAT
* *
117258 TTAATAA TTAATA TTAATA CTTAA-A TT-ATA TTTATA TTAATA -TAATT
1 TTAAT-A TTAATA TTAATA -TTAATA TTAATA TTAATA TTAATA TTAATA
*
117305 TTAATAA TT--TA TGACA-A TTAATA TT-ATAA TTATATA TTAATA TTA
1 TTAAT-A TTAATA TTA-ATA TTAATA TTAAT-A TTA-ATA TTAATA TTA
117350 TTTACTTATA
Statistics
Matches: 68, Mismatches: 5, Indels: 25
0.69 0.05 0.26
Matches are distributed among these distances:
4 3 0.04
5 13 0.19
6 35 0.51
7 15 0.22
8 2 0.03
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:117345 original size:19 final size:19
Alignment explanation
Indices: 117321--117382 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 19
117311 ATTTATGACA
117321 ATTAATATTATAATTATAT
1 ATTAATATTATAATTATAT
117340 ATTAATATTAT--TTACT-T
1 ATTAATATTATAATTA-TAT
*
117357 ATAAAT-TTATAATTATAAT
1 ATTAATATTATAATTAT-AT
117376 ATTAATA
1 ATTAATA
117383 ATTTGTTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
16 4 0.11
17 10 0.29
18 4 0.11
19 17 0.49
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTAATATTATAATTATAT
Found at i:117400 original size:36 final size:34
Alignment explanation
Indices: 117323--117454 Score: 96
Period size: 35 Copynumber: 3.8 Consensus size: 34
117313 TTATGACAAT
* *
117323 TAATATTATAATTATATATTAATATTATTTACTTA
1 TAAT-TTATAATTATATATTAATATTATTTAATAA
117358 TAAATTTATAATTATAATATTAATAATT-TGTTAATAA
1 T-AATTTATAATTAT-ATATTAAT-ATTAT-TTAATAA
*
117395 TAATTTATAA-TA-CTATTAATAATATATTATAA-AA
1 TAATTTATAATTATATATTAAT-AT-TATT-TAATAA
*
117429 TAATATTATATATAATA-ATT-ATATTA
1 TAAT-TTATA-ATTATATATTAATATTA
117455 AATAATTTAA
Statistics
Matches: 81, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
33 10 0.12
34 10 0.12
35 24 0.30
36 24 0.30
37 13 0.16
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (34 bp):
TAATTTATAATTATATATTAATATTATTTAATAA
Found at i:117415 original size:22 final size:23
Alignment explanation
Indices: 117388--117464 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 23
117378 TAATAATTTG
* *
117388 TTAATAATAATT-TATAATACTA
1 TTAATAATAATTATAAAATAATA
117410 TTAATAATATATTATAAAATAATA
1 TTAATAATA-ATTATAAAATAATA
117434 TTATATATAATAATTATATTAAATAAT-
1 -T-TA-ATAATAATTATA--AAATAATA
117461 TTAA
1 TTAA
117465 AACTTATAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
22 9 0.20
23 3 0.07
24 9 0.20
25 3 0.07
26 9 0.20
27 6 0.13
28 7 0.15
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (23 bp):
TTAATAATAATTATAAAATAATA
Found at i:117438 original size:18 final size:18
Alignment explanation
Indices: 117389--117454 Score: 68
Period size: 19 Copynumber: 3.8 Consensus size: 18
117379 AATAATTTGT
117389 TAATAATAAT-TTATAATA
1 TAATAATAATATTAT-ATA
*
117407 CTATTAATAATA-TAT-TA
1 -TAATAATAATATTATATA
117424 TAA-AATAATATTATATA
1 TAATAATAATATTATATA
*
117441 TAATAATTATATTA
1 TAATAATAATATTA
117455 AATAATTTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
15 7 0.17
16 5 0.12
17 7 0.17
18 9 0.22
19 12 0.30
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATAATAATATTATATA
Found at i:117594 original size:21 final size:18
Alignment explanation
Indices: 117569--117619 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 18
117559 TTAGTACAAA
117569 TATTAAATATATTATAAAT
1 TATTAAATATATTA-AAAT
117588 ACTATTAAAT-TAATTAAAAT
1 --TATTAAATAT-ATTAAAAT
117608 TATTAAA-ATATT
1 TATTAAATATATT
117620 TTAATAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 3 0.11
18 8 0.29
20 5 0.18
21 12 0.43
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
TATTAAATATATTAAAAT
Found at i:117822 original size:21 final size:22
Alignment explanation
Indices: 117771--117823 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
117761 CATAATATTT
117771 TAATTAA-ATT-TGCTTAATAA
1 TAATTAATATTATGCTTAATAA
*
117791 TGA-TAATTATTATG-TTAATAA
1 TAATTAA-TATTATGCTTAATAA
117812 TAATTAATATTA
1 TAATTAATATTA
117824 ATATAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 3 0.11
20 2 0.07
21 17 0.63
22 5 0.19
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (22 bp):
TAATTAATATTATGCTTAATAA
Found at i:117835 original size:13 final size:15
Alignment explanation
Indices: 117793--117838 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
117783 CTTAATAATG
* *
117793 ATAATTATTATGTTA
1 ATAATAATTATATTA
117808 ATAATAATTAATATTA
1 ATAATAATT-ATATTA
117824 AT-ATAATT-TATTA
1 ATAATAATTATATTA
117837 AT
1 AT
117839 TTTAAATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATAATAATTATATTA
Found at i:117896 original size:66 final size:67
Alignment explanation
Indices: 117762--117901 Score: 161
Period size: 66 Copynumber: 2.1 Consensus size: 67
117752 ATTTAATATC
*
117762 ATAATATT-TTAA--TTAAATTTGCTTAATAATGATAATTATTATGTTAATAATAATTAATATTA
1 ATAATATTATTAATTTTAAATTTGCTTAATAATGATAAGTATTATGTTAATAATAATTAATATTA
117824 AT
66 AT
* *
117826 ATAAT-TTATTAATTTTAAATTTGTTTAATTAAT-ATAAGTATTA-GTTTACTAATAA-TAA-AT
1 ATAATATTATTAATTTTAAATTTGCTTAA-TAATGATAAGTATTATG-TTAATAATAATTAATAT
117886 TATAT
64 TA-AT
117891 AATAATATTAT
1 -ATAATATTAT
117902 AATAATATTA
Statistics
Matches: 65, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
63 2 0.03
64 13 0.20
65 6 0.09
66 36 0.55
67 8 0.12
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.49
Consensus pattern (67 bp):
ATAATATTATTAATTTTAAATTTGCTTAATAATGATAAGTATTATGTTAATAATAATTAATATTA
AT
Found at i:118137 original size:16 final size:16
Alignment explanation
Indices: 118102--118158 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
118092 AAATAATAAG
118102 TATAATATATTAATTA-A
1 TATAAT-TATT-ATTATA
118119 TATAATTATTATTATA
1 TATAATTATTATTATA
*
118135 TATAATAATTTATT-TA
1 TATAATTA-TTATTATA
118151 TA-AATTAT
1 TATAATTAT
118159 AAATTATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
14 1 0.03
15 8 0.22
16 16 0.44
17 11 0.31
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATAATTATTATTATA
Found at i:118285 original size:16 final size:16
Alignment explanation
Indices: 118253--118286 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
118243 TTATATCATA
* *
118253 ATTATATAAATTGATT
1 ATTATATAAAGTAATT
118269 ATTATATAAAGTAATT
1 ATTATATAAAGTAATT
118285 AT
1 AT
118287 ATTATTAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (16 bp):
ATTATATAAAGTAATT
Found at i:118854 original size:17 final size:17
Alignment explanation
Indices: 118776--118860 Score: 57
Period size: 17 Copynumber: 4.7 Consensus size: 17
118766 TTAGATTTAA
*
118776 TAATTAATAATAAATTAT
1 TAATTAATAAT-AATCAT
* * *
118794 TATTATTAATATTATATGAA
1 TA--ATTAATAATA-ATCAT
118814 TAATCTAATAATAATC--
1 TAAT-TAATAATAATCAT
118830 TAGGATTAATAATAATCAT
1 TA--ATTAATAATAATCAT
118849 TAATTAATAATA
1 TAATTAATAATA
118861 CATAAATAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 17
0.71 0.07 0.22
Matches are distributed among these distances:
16 2 0.04
17 21 0.39
18 8 0.15
19 10 0.19
20 13 0.24
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (17 bp):
TAATTAATAATAATCAT
Found at i:119666 original size:15 final size:15
Alignment explanation
Indices: 119617--119674 Score: 63
Period size: 14 Copynumber: 4.2 Consensus size: 15
119607 AATTATTGTT
*
119617 ATTAATTAACATTT-
1 ATTAATTAATATTTA
*
119631 ATTAATTAGTA---A
1 ATTAATTAATATTTA
119643 ATTAA-TAATATTTA
1 ATTAATTAATATTTA
119657 ATTAATTAATATTTA
1 ATTAATTAATATTTA
119672 ATT
1 ATT
119675 TAATAAATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
11 4 0.11
12 5 0.14
14 15 0.42
15 12 0.33
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (15 bp):
ATTAATTAATATTTA
Found at i:120044 original size:26 final size:26
Alignment explanation
Indices: 119995--120044 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
119985 ATTGTATATT
* *
119995 TTAATAAATTTATTACAATTAAATTG
1 TTAATAAATTTATAACAATCAAATTG
* *
120021 TTAATAATTTTATAATAATCAAAT
1 TTAATAAATTTATAACAATCAAAT
120045 ACTATAATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (26 bp):
TTAATAAATTTATAACAATCAAATTG
Found at i:120466 original size:12 final size:12
Alignment explanation
Indices: 120449--120486 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
120439 TTAATAAGCA
*
120449 ATTATAATTATT
1 ATTATAATTAAT
120461 ATTATAA-TAAT
1 ATTATAATTAAT
120472 ATTAGTAATTAAT
1 ATTA-TAATTAAT
120485 AT
1 AT
120487 AAAATAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 7 0.30
12 10 0.43
13 6 0.26
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (12 bp):
ATTATAATTAAT
Found at i:120837 original size:10 final size:10
Alignment explanation
Indices: 120820--120877 Score: 64
Period size: 10 Copynumber: 5.8 Consensus size: 10
120810 ATAATTAAAA
120820 ATTATATAATT
1 ATTA-ATAATT
* *
120831 ATTTATACTT
1 ATTAATAATT
* *
120841 ATTAATTATA
1 ATTAATAATT
120851 ATT-ATAATT
1 ATTAATAATT
120860 ATTAATAATT
1 ATTAATAATT
120870 ATTAATAA
1 ATTAATAA
120878 CTAATTAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
9 7 0.18
10 28 0.74
11 3 0.08
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTAATAATT
Found at i:120861 original size:19 final size:17
Alignment explanation
Indices: 120819--120865 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
120809 AATAATTAAA
120819 AATTATATAATTATTTAT
1 AATTAT-TAATTATTTAT
*
120837 ACTTATTAATTATAATTAT
1 AATTATTAATTAT--TTAT
120856 AATTATTAAT
1 AATTATTAAT
120866 AATTATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 7 0.28
18 5 0.20
19 13 0.52
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (17 bp):
AATTATTAATTATTTAT
Found at i:121468 original size:13 final size:13
Alignment explanation
Indices: 121450--121493 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
121440 CTAATCTGTA
121450 TATTAATATAAAT
1 TATTAATATAAAT
*
121463 TATTAATATATAT
1 TATTAATATAAAT
*
121476 TATGGAATATGAAAT
1 TAT-TAATAT-AAAT
121491 TAT
1 TAT
121494 ATTATTAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 15 0.58
14 5 0.19
15 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (13 bp):
TATTAATATAAAT
Found at i:121562 original size:31 final size:31
Alignment explanation
Indices: 121527--121585 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
121517 AGATAAACTA
121527 TAATAGTT-ATATTTTATT-AATATTAAATAGT
1 TAATA-TTAATATTTTATTAAATA-TAAATAGT
121558 TAATATTAATATTTTATTAAATATAAAT
1 TAATATTAATATTTTATTAAATATAAAT
121586 TATTTACTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 2 0.08
31 20 0.77
32 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (31 bp):
TAATATTAATATTTTATTAAATATAAATAGT
Found at i:121748 original size:17 final size:16
Alignment explanation
Indices: 121726--121760 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
121716 ATTAATTGCT
121726 TAATTAATATTAAGTTA
1 TAATTAATATTAA-TTA
*
121743 TAATTATTATTAATTA
1 TAATTAATATTAATTA
121759 TA
1 TA
121761 TGACTAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (16 bp):
TAATTAATATTAATTA
Found at i:121818 original size:18 final size:19
Alignment explanation
Indices: 121790--121825 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
121780 TGTTTATCAA
121790 ACTAGTTTGAATAATTATG
1 ACTAGTTTGAATAATTATG
121809 ACTA-TTTGAATAATTAT
1 ACTAGTTTGAATAATTAT
121826 CAATCTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (19 bp):
ACTAGTTTGAATAATTATG
Found at i:122009 original size:14 final size:14
Alignment explanation
Indices: 121990--122038 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
121980 AAATTATTAT
121990 AATTTATAATAATA
1 AATTTATAATAATA
*
122004 AATTTATATTATTAATT
1 AATTTATA--A-TAATA
*
122021 AATTTACAATAATA
1 AATTTATAATAATA
122035 AATT
1 AATT
122039 ATTATTTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 16 0.55
15 1 0.03
16 1 0.03
17 11 0.38
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (14 bp):
AATTTATAATAATA
Found at i:122524 original size:25 final size:25
Alignment explanation
Indices: 122484--122553 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
122474 TAAAATTATA
*
122484 ATTATTTTA-A-TA-AATA-ATGAT
1 ATTATTTTATATTATAATATATAAT
122505 ATTATTTATATATTATAATATATAAT
1 ATTATTT-TATATTATAATATATAAT
*
122531 ATTCTTTTATATTATAATCATAT
1 ATTATTTTATATTATAAT-ATAT
122554 TAGTAGTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
21 7 0.17
22 2 0.05
23 1 0.02
24 2 0.05
25 15 0.37
26 14 0.34
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (25 bp):
ATTATTTTATATTATAATATATAAT
Found at i:122723 original size:12 final size:13
Alignment explanation
Indices: 122688--122716 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
122678 TATGTTTTGT
122688 AATAATTA-TATA
1 AATAATTATTATA
122700 AATAATTATTATA
1 AATAATTATTATA
122713 AATA
1 AATA
122717 TTTTTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
AATAATTATTATA
Found at i:122860 original size:13 final size:13
Alignment explanation
Indices: 122844--122891 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
122834 TTATTGTTAT
122844 TAATAATTAATTA
1 TAATAATTAATTA
*
122857 TAATAACAATAATTA
1 TAAT-A-ATTAATTA
122872 TAATAA-TATATTA
1 TAATAATTA-ATTA
122885 TAATAAT
1 TAATAAT
122892 AATATTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 2 0.07
13 15 0.50
14 2 0.07
15 11 0.37
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (13 bp):
TAATAATTAATTA
Found at i:122862 original size:3 final size:3
Alignment explanation
Indices: 122844--122895 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
122834 TTATTGTTAT
* * * *
122844 TAA TAA TTAA TTA TAA TAA CAA TAA TTA TAA TAA TATA TTA TAA TAA
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA
122891 TAA TA
1 TAA TA
122896 TTATTATATT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
3 34 0.87
4 5 0.13
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:122875 original size:28 final size:27
Alignment explanation
Indices: 122844--122899 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 27
122834 TTATTGTTAT
122844 TAATAAT-TAATTATAATAACAATAATTA
1 TAATAATAT-ATTATAATAACAAT-ATTA
*
122872 TAATAATATATTATAATAATAATATTA
1 TAATAATATATTATAATAACAATATTA
122899 T
1 T
122900 TATATTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 5 0.19
28 20 0.77
29 1 0.04
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (27 bp):
TAATAATATATTATAATAACAATATTA
Found at i:122887 original size:19 final size:17
Alignment explanation
Indices: 122865--122907 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
122855 TATAATAACA
122865 ATAATTATAATAATATATT
1 ATAATTATAAT-AT-TATT
*
122884 ATAATAATAATATTATT
1 ATAATTATAATATTATT
122901 AT-ATTAT
1 ATAATTAT
122908 TTATTAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 4 0.18
17 6 0.27
18 2 0.09
19 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAATTATAATATTATT
Found at i:122887 original size:25 final size:25
Alignment explanation
Indices: 122846--122907 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
122836 ATTGTTATTA
122846 ATAATTAATTATAATAACAATAATT
1 ATAATTAATTATAATAACAATAATT
* *
122871 ATAA-TAATATATTATAATAATAA-T
1 ATAATTAAT-TATAATAACAATAATT
*
122895 ATTATTATATTAT
1 ATAATTA-ATTAT
122908 TTATTAATGA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 8 0.26
25 21 0.68
26 2 0.06
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATAATTAATTATAATAACAATAATT
Found at i:122889 original size:22 final size:22
Alignment explanation
Indices: 122864--122907 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
122854 TTATAATAAC
*
122864 AATAATTATAATAATATATTAT
1 AATAATAATAATAATATATTAT
* *
122886 AATAATAATATTATTATATTAT
1 AATAATAATAATAATATATTAT
122908 TTATTAATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AATAATAATAATAATATATTAT
Found at i:122926 original size:21 final size:21
Alignment explanation
Indices: 122891--122959 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
122881 ATTATAATAA
122891 TAATATTATTATATTATTTAT
1 TAATATTATTATATTATTTAT
*
122912 TAATGATTATT-TATTATTTAA
1 TAAT-ATTATTATATTATTTAT
* *
122933 TAA-ATTAATTATTTTATTATAA
1 TAATATT-ATTATATTATT-TAT
122955 TAATA
1 TAATA
122960 GATATTTCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 3 0.07
20 3 0.07
21 22 0.54
22 12 0.29
23 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (21 bp):
TAATATTATTATATTATTTAT
Found at i:123079 original size:18 final size:16
Alignment explanation
Indices: 123065--123120 Score: 53
Period size: 15 Copynumber: 3.5 Consensus size: 16
123055 TATTTTAGAT
123065 AATATATAAATTTTAA
1 AATATATAAATTTTAA
* *
123081 AATATATATTATTATAGA
1 AATATATA-AATTTTA-A
123099 AAT-TAT-AATTTTAA
1 AATATATAAATTTTAA
*
123113 ATTATATA
1 AATATATA
123121 TTATTAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
14 3 0.10
15 8 0.26
16 8 0.26
17 8 0.26
18 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
AATATATAAATTTTAA
Found at i:123123 original size:32 final size:35
Alignment explanation
Indices: 123055--123139 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 35
123045 GTCTTAAATA
*
123055 TATTTTAGATAATATATAAATTTTAAAATATATAT
1 TATTATAGATAATATATAAATTTTAAAATATATAT
*
123090 TATTATAGA-AAT-TAT-AATTTTAAATTATATAT
1 TATTATAGATAATATATAAATTTTAAAATATATAT
*
123122 TATTA-AAATGAATATATA
1 TATTATAGAT-AATATATA
123140 CTTATTAATC
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
31 2 0.05
32 21 0.49
33 6 0.14
34 6 0.14
35 8 0.19
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (35 bp):
TATTATAGATAATATATAAATTTTAAAATATATAT
Found at i:123405 original size:36 final size:36
Alignment explanation
Indices: 123353--123426 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
123343 AATCTCCAAC
*
123353 TTCTTAATTTTTGAAATATTAATAAAGTAATATTAT
1 TTCTCAATTTTTGAAATATTAATAAAGTAATATTAT
*
123389 TTCTCAATTTTTGAAATATTGATAAAGTAATATTAT
1 TTCTCAATTTTTGAAATATTAATAAAGTAATATTAT
123425 TT
1 TT
123427 TATTTTGGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (36 bp):
TTCTCAATTTTTGAAATATTAATAAAGTAATATTAT
Found at i:123733 original size:179 final size:181
Alignment explanation
Indices: 123396--123736 Score: 395
Period size: 179 Copynumber: 1.9 Consensus size: 181
123386 TATTTCTCAA
* * * * * *
123396 TTTTTGAAATATTGATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATGAAATGAAACAATT
1 TTTTTGAAATATTAATAAAATAATATTATTTTATTTTGAATAAGCATGTACGAAATGAAACAATT
* * * * *
123461 GTTTTATGATAAAACAAAAGGTCATAACGGTTTTAAAATGATAATTGTTTAAATAGTCCTAACTA
66 ATTTTATGATAAAACAAAAGGTCAAAACGATTTGAAAATGATAATTATTTAAATAGTCCTAACTA
* ** ****
123526 TTTAAATTTGTTTGGTAAACAAATTTATTTTTTAATTCCTTGCTTATTAAT
131 TTTAAACTAATTCAACAAACAAATTTATTTTTTAATTCCTTGCTTATTAAT
* * *
123577 TTTTTG-AATGTTAATAAAATAGTATTATTTTATTTTGAATAAGCATGTACGAACT-AAACAATT
1 TTTTTGAAATATTAATAAAATAATATTATTTTATTTTGAATAAGCATGTACGAAATGAAACAATT
* *
123640 ATTTTATGACT-AAACAAAAGGTCAAAATGATTTG-AAATAGATAATTA-TTATAATAGTCTTAA
66 ATTTTATGA-TAAAACAAAAGGTCAAAACGATTTGAAAAT-GATAATTATTTA-AATAGTCCTAA
* *
123702 CTATTTAAACTAATTCAACAAATACATTTATTTTT
128 CTATTTAAACTAATTCAACAAACAAATTTATTTTT
123737 AGAATATTAT
Statistics
Matches: 132, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
178 7 0.05
179 78 0.59
180 41 0.31
181 6 0.05
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (181 bp):
TTTTTGAAATATTAATAAAATAATATTATTTTATTTTGAATAAGCATGTACGAAATGAAACAATT
ATTTTATGATAAAACAAAAGGTCAAAACGATTTGAAAATGATAATTATTTAAATAGTCCTAACTA
TTTAAACTAATTCAACAAACAAATTTATTTTTTAATTCCTTGCTTATTAAT
Found at i:124092 original size:23 final size:25
Alignment explanation
Indices: 124040--124092 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
124030 ATCGGTAAAC
* *
124040 AAATTTATTTTTAAAATATTTTACT
1 AAATTAATTTTTAAAATATTTTAAT
*
124065 -TATTAATTTTT-AAA-ATTTTAAT
1 AAATTAATTTTTAAAATATTTTAAT
124087 AAATTA
1 AAATTA
124093 GTATTATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
22 7 0.30
23 7 0.30
24 9 0.39
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
AAATTAATTTTTAAAATATTTTAAT
Found at i:124218 original size:163 final size:164
Alignment explanation
Indices: 123900--124745 Score: 474
Period size: 181 Copynumber: 4.8 Consensus size: 164
123890 TTTTAAATCT
* ** * *
123900 CTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATAA-TTTTGTACGAATA
1 CTTATTAATTTTTAAAATTTTAATAAATTAGTATTATTTTATTTCAAATAAGCTTT-TATGAATA
* * * * * *
123964 GAAACAATTGTTTTATTACAAAACAAAGGATCACAACAATTTGAAATAAATAATTATTTGAACTC
65 GAAACAATTGTTTTATGACAAAACAAAGG-TCATAACAATTTGAAATAGATAATT-GTTCAAAT-
* * * *
124029 AATCGGTAAACAAATTT--A-TT-TTT-AAAA-T-ATTTTA
127 AGTC-AT-AAC-TATTTGAACTTGTTTAAAAACTAAATTTA
*
124063 CTTATTAATTTTTAAAATTTTAATAAATTAGTATTATTTTATTTCAAATAAGCTTTTATGAATAT
1 CTTATTAATTTTTAAAATTTTAATAAATTAGTATTATTTTATTTCAAATAAGCTTTTATGAATAG
* * *
124128 AAACAATTGGTTTATGACAAAACAAATGGTCATAACGATTTGAAATAGATAATTGTTCAAATTGT
66 AAACAATTGTTTTATGACAAAACAAA-GGTCATAACAATTTGAAATAGATAATTGTTCAAATAGT
*
124193 CATAATTATTTTGAACTTGTTTAAAAACTAAATTTA
130 CATAACTA-TTTGAACTTGTTTAAAAACTAAATTTA
* *
124229 -TTTTATATATTTTTACTTATTAATCTTTGGAATATTAGTAAATTTA-TATTATTTTATTTGAAA
1 CTTAT-TA-ATTTTTA---A--AA--TTT----TA--A-TAAA-TTAGTATTATTTTATTTCAAA
* * * *
124292 TAAGCTTGTATGAACAGAAACAATCGTTTTATGTCAAAACAAAAGGTCATAACAATTTGAAATAG
49 TAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAAC-AAAGGTCATAACAATTTGAAATAG
*
124357 ATAATTGTCCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTCATTTTTTAAATCTC
113 ATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TT--TAAA-A-A--C------TAAA--T-
124422 TTA
162 TTA
* * ** ** * * * * *
124425 CTCAATAATTTTTTGGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATT
1 CTTATTAA-TTTTTAAAATTTTAATAAATTAGTATTATTTTATTTCAAATAAGCTTTTATGAATA
* * * ** * *
124490 GATATAATTATTTTATGATGAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCATATAG
65 GAAACAATTGTTTTATGACAAAAC-AAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAG
* * *
124555 TTATTACTATTTGAACTTGTTCGGTAAACATATTTATTTTTTCAATCTTTTA
129 TCATAACTATTTGAACTTGTT---TAAA-A-A-CTA-------AA---TTTA
* * * * * ** *
124607 CTTATTAATTGTTGAAATATTAATAAATTAATATTATTTTA-ATCTAAATAAGCTAATATGAACA
1 CTTATTAATTTTTAAAATTTTAATAAATTAGTATTATTTTATTTC-AAATAAGCTTTTATGAATA
* * * * * * *
124671 AAAATAATTGTTTTATGACAAAACAAAAGGTTATAA-TATTTGAAATAAATAATTGTTCTAATAA
65 GAAACAATTGTTTTATGACAAAAC-AAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAG
124735 TCATAACTATT
129 TCATAACTATT
124746 CAAAATTATT
Statistics
Matches: 536, Mismatches: 90, Indels: 97
0.74 0.12 0.13
Matches are distributed among these distances:
158 1 0.00
159 5 0.01
160 1 0.00
161 3 0.01
162 7 0.01
163 104 0.19
164 9 0.02
165 4 0.01
166 7 0.01
167 7 0.01
170 1 0.00
172 2 0.00
174 3 0.01
175 2 0.00
178 2 0.00
180 44 0.08
181 176 0.33
182 127 0.24
183 6 0.01
184 1 0.00
185 3 0.01
187 1 0.00
189 1 0.00
191 2 0.00
193 4 0.01
195 2 0.00
196 10 0.02
197 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (164 bp):
CTTATTAATTTTTAAAATTTTAATAAATTAGTATTATTTTATTTCAAATAAGCTTTTATGAATAG
AAACAATTGTTTTATGACAAAACAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTC
ATAACTATTTGAACTTGTTTAAAAACTAAATTTA
Found at i:124516 original size:182 final size:181
Alignment explanation
Indices: 124033--124745 Score: 781
Period size: 181 Copynumber: 3.9 Consensus size: 181
124023 GAACTCAATC
* * * ** *
124033 GGTAAACAAATTTATTTTTAAAATATTTTACTTATTAATTTTTAAAATTTTAATAAATTAGTATT
1 GGTAAATAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAATATTAATAAATTAGTATT
* * * * * *
124098 ATTTTATTTCAAATAAGCTTTTATGAATATAAACAATTGGTTTATGACAAAACAAATGGTCATAA
66 ATTTTATTTCAAATAAGCCTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAA
* * *
124163 CGATTTGAAATAGATAATTGTTCAAATTGTCATAATTATTTTGAACTTGTTT
131 CAATTTGAAATAGATAATTGTTCAAATAGTCATAACTA-TTTGAACTTGTTT
** * * * *
124215 -AAAAACTAAATTTATTTTATATAT-TTTTACTTATTAATCTTTGGAATATTAGTAAATTTA-TA
1 GGTAAA-TAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAATATTAATAAA-TTAGTA
* * * * *
124277 TTATTTTATTTGAAATAAGCTTGTATGAACAGAAACAATCGTTTTATGTCAAAACAAAAGGTCAT
64 TTATTTTATTTCAAATAAGCCTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCAT
*
124342 AACAATTTGAAATAGATAATTGTCCAAATAGTCATAACTATTTGAACTTGTTT
129 AACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTT
* * * * * * *
124395 GGTAAATAGATTCATTTTTTAAATCTCTTACTCAATAATTTTTTGGAATAGTAATAAGTTAGTAT
1 GGTAAATAAATTTATTTTTTAAATCTTTTACTTATTAA-TTTTTGGAATATTAATAAATTAGTAT
* ** * * * **
124460 TATTTTATTTCGAATAAGCCTATATGAATTGATATAATTATTTTATGATGAAACAAAAGGTCATA
65 TATTTTATTTCAAATAAGCCTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * * * *
124525 ACAATTTGAAATAGATAATTATTCATATAGTTATTACTATTTGAACTTGTTC
130 ACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTT
* * * * * *
124577 GGTAAACATATTTATTTTTTCAATCTTTTACTTATTAATTGTTGAAATATTAATAAATTAATATT
1 GGTAAATAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAATATTAATAAATTAGTATT
* * * *
124642 ATTTTA-ATCTAAATAAG-CTAATATGAACAAAAATAATTGTTTTATGACAAAACAAAAGGTTAT
66 ATTTTATTTC-AAATAAGCCT-ATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCAT
* * * *
124705 AA-TATTTGAAATAAATAATTGTTCTAATAATCATAACTATT
129 AACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATT
124746 CAAAATTATT
Statistics
Matches: 438, Mismatches: 85, Indels: 18
0.81 0.16 0.03
Matches are distributed among these distances:
180 62 0.14
181 212 0.48
182 164 0.37
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (181 bp):
GGTAAATAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAATATTAATAAATTAGTATT
ATTTTATTTCAAATAAGCCTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAA
CAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTT
Found at i:125201 original size:482 final size:482
Alignment explanation
Indices: 124284--125203 Score: 990
Period size: 482 Copynumber: 1.9 Consensus size: 482
124274 ATATTATTTT
* * *
124284 ATTTGAAATAAGCTTGTATGAACAGAAACAATCGTTTTATGTCAAAACAAAAGGTCATAACAATT
1 ATTTGAAATAAGCTTGTATGAACAGAAAAAATCATTTTATGACAAAACAAAAGGTCATAACAATT
* ** * * *
124349 TGAAATAGATAATTGTCCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTCATTTTT
66 TGAAATAGATAATTGTCCAAACAACCATAACTATTTGAACTTATTTGGTAAACAAATTCATTTTT
* * * *
124414 TAAATCTCTTACTCAATAATTTTTTGGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGC
131 TAAATCTCTCACTCAATAATTTTTTGGAATAATAATAAGTTAGAATTATGTTATTTCGAATAAGC
** * * *
124479 CTATATGAATTGATATAATTATTTTATGATGAAACAAAAGGTCATAACAATTTGAAATAGATAAT
196 CTATATGAATCAAAACAATTATTTTATGATGAAACAAAAGGTCATAACAATTTGAAATAGATAAG
* * * * * * * * * * **
124544 TATTCATATAGTTATTACTATTTGAACTTGTTCGGTAAACATATTTATTTTTTCAATCTTTTACT
261 TATTCAAATAGTCATAACTATTTGAACTAGTTCAGCAAACATAATCATTTTCTAAATCCATTACT
* * * * *
124609 TATTAATTGTTGAAATATTAATAAATTAATATTATTTTAATCTAAATAAGCTAATATGAACAAAA
326 TATTAATTGTTAAAATATTAATAAATTAACATTACTTTAATCGAAATAAGATAATATGAACAAAA
* * * *
124674 ATAATTGTTTTATGACAAAACAAAAGGTTATAATATTTGAAATAAATAATTGTTCTAATAATCAT
391 ACAATTGTTTTATGAAAAAACAAAAGGTCATAAGATTTGAAATAAATAATTGTTCTAATAATCAT
124739 AACTATTCAAAATTATTCAGTAAACAG
456 AACTATTCAAAATTATTCAGTAAACAG
* * * * *
124766 ATTTGAAATAAGCTTGTATGAATAGAAAAAATTATTTTATGACAATAA-AAAAGTTTATAGCAAT
1 ATTTGAAATAAGCTTGTATGAACAGAAAAAATCATTTTATGACAA-AACAAAAGGTCATAACAAT
* * *
124830 TTGAACTA-AGTAATTGGT-CAAACAACCATAATTATTTGAACTTATTTGGTAAACAAATTTATT
65 TTGAAATAGA-TAATT-GTCCAAACAACCATAACTATTTGAACTTATTTGGTAAACAAATTCATT
* * *
124893 TTTTAAATCTCTCACCTTATTAA-TTTTTGGAA-AATTATAA-TTAGAATTATGTTA-TTCTGAA
128 TTTTAAATCTCTCA-CTCAATAATTTTTTGGAATAATAATAAGTTAGAATTATGTTATTTC-GAA
* * * *
124954 TAAGCTTGTATGAA-CAAAAGCAATTGTTCTTGTGA-GAAACAAAAGGTCATAACAATTTGAAAT
191 TAAGCCTATATGAATCAAAA-CAATTATT-TTATGATGAAACAAAAGGTCATAACAATTTGAAAT
* * * * * *
125017 GGATAGGTGTTCAAATTAGTCCATAATTGTTTGCACTAG-TCAAGCAAA-A-AATCATTTTCTAA
254 AGATAAGTATTCAAA-TAGT-CATAACTATTTGAACTAGTTC-AGCAAACATAATCATTTTCTAA
* * * *
125079 ATCCATTACTTATT-ATTTTTAAAAATATTAATAAATTAACATTACTTTATTCCGAATTAAGATT
316 ATCCATTACTTATTAATTGTT-AAAATATTAATAAATTAACATTACTTTAAT-CGAAATAAGATA
* *
125143 ATATGAACAGAAACAATTGTTTT-TGATAAAAAC-AATGGTCCATGAACGATTT-AAATAAATA
379 ATATGAACAAAAACAATTGTTTTATGA-AAAAACAAAAGGT-CAT-AA-GATTTGAAATAAATA
125204 TTGGTCAAAT
Statistics
Matches: 356, Mismatches: 66, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
479 10 0.03
480 126 0.35
481 55 0.15
482 151 0.42
483 14 0.04
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (482 bp):
ATTTGAAATAAGCTTGTATGAACAGAAAAAATCATTTTATGACAAAACAAAAGGTCATAACAATT
TGAAATAGATAATTGTCCAAACAACCATAACTATTTGAACTTATTTGGTAAACAAATTCATTTTT
TAAATCTCTCACTCAATAATTTTTTGGAATAATAATAAGTTAGAATTATGTTATTTCGAATAAGC
CTATATGAATCAAAACAATTATTTTATGATGAAACAAAAGGTCATAACAATTTGAAATAGATAAG
TATTCAAATAGTCATAACTATTTGAACTAGTTCAGCAAACATAATCATTTTCTAAATCCATTACT
TATTAATTGTTAAAATATTAATAAATTAACATTACTTTAATCGAAATAAGATAATATGAACAAAA
ACAATTGTTTTATGAAAAAACAAAAGGTCATAAGATTTGAAATAAATAATTGTTCTAATAATCAT
AACTATTCAAAATTATTCAGTAAACAG
Found at i:125395 original size:181 final size:178
Alignment explanation
Indices: 124880--125416 Score: 504
Period size: 181 Copynumber: 3.0 Consensus size: 178
124870 CTTATTTGGT
* *
124880 AAACAAATTTATTTTTTAAATCTCTCACCTTATTAATTTTTGGAAA-ATT-AT-AATTAGAATTA
1 AAAC-AATTTATTTTTTAAATCTCTTA-CTTATTAATTTTTAGAAATATTAATAAATTA-AATTA
* ** * * * *
124942 TGTTATTCTGAATAAGCTTGTATGAACAAAAGCAATTGTTCTTGTGAGAAACAAAAGGTCATAAC
63 TTTTATTCCAAATAAACTTATATGAACAAAAACAATTGTT-TT-TGAAAAACAAAAGGTCATAAC
* ** * *
125007 AATTTGAAATGGATAGGTGTTCAAATTAGTCCATAATTGTTTGCACTAGTCAAGC
126 AATTTGAAATAGATAATTGTTCAAA-TAGT-CATAATTATTTGAACTAGTCAAGC
* * * * *
125062 AAA-AAATCATTTTCTAAATC-CATTACTTATT-ATTTTTAAAAATATTAATAAATTAACATTAC
1 AAACAATTTATTTTTTAAATCTC-TTACTTATTAATTTTTAGAAATATTAATAAATTAA-ATTAT
* * *
125124 TTTATTCCGAATTAAGA-TTATATGAACAGAAACAATTGTTTTTGATAAAA-ACAATGGTCCATG
64 TTTATTCC-AAATAA-ACTTATATGAACAAAAACAATTGTTTTTGA-AAAACA-AAAGGT-CAT-
* * * * * * *
125187 AACGATTT-AAATAAAT-ATTGGTCAAATAGTTATAACTAATTGAACTAGT-ATGGC
123 AACAATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTAGTCA-AGC
125241 AAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTT-GAAATATTAATAAATTAATATTAT
1 AAACA-ATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAAATATTAATAAATTAA-ATTAT
* * *
125305 TTTATTCCAAACAAACTTATATGAACAAAAACATTTGTTTTATGACAAAACAAAAGGTAATAACA
64 TTTATTCCAAATAAACTTATATGAACAAAAACAATTGTTTT-TGA-AAAACAAAAGGTCATAACA
* *
125370 ATTTGAAATAGATAATTATTCAAATAGTCATAATTATTTGAAATAGT
127 ATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTAGT
125417 TTTGTAAACA
Statistics
Matches: 284, Mismatches: 50, Indels: 43
0.75 0.13 0.11
Matches are distributed among these distances:
178 10 0.04
179 37 0.13
180 64 0.23
181 122 0.43
182 44 0.15
183 7 0.02
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (178 bp):
AAACAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAAATATTAATAAATTAAATTATTT
TATTCCAAATAAACTTATATGAACAAAAACAATTGTTTTTGAAAAACAAAAGGTCATAACAATTT
GAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTAGTCAAGC
Found at i:125396 original size:16 final size:17
Alignment explanation
Indices: 125375--125407 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
125365 TAACAATTTG
125375 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
125391 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
125408 TGAAATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:125415 original size:19 final size:18
Alignment explanation
Indices: 125370--125416 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
125360 GGTAATAACA
125370 ATTTGAAATAG-ATAATT
1 ATTTGAAATAGTATAATT
*
125387 A-TTCAAATAGTCATAATT
1 ATTTGAAATAGT-ATAATT
125405 ATTTGAAATAGT
1 ATTTGAAATAGT
125417 TTTGTAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 8 0.32
17 1 0.04
18 7 0.28
19 9 0.36
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (18 bp):
ATTTGAAATAGTATAATT
Found at i:126180 original size:181 final size:181
Alignment explanation
Indices: 125427--126344 Score: 827
Period size: 181 Copynumber: 5.1 Consensus size: 181
125417 TTTGTAAACA
* * * * * * * *
125427 AAATCGTTATGACTTTTTATTTTGTAATAAAACAATTGTTTTTGTTCATACAAGCTTATTCGGAT
1 AAATCATTATGAC-CTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGAA
* * * *
125492 TAAAATAATATTAATTTATTAATATTT-TGACAATTAACAAGTGAAAGATTTAAAAAATAAATAT
65 TAAAATAATATTAATTTATTAATATTTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATAT
* * * * * *
125556 GTTTACCAAACAAGTTCAAATAGTCAAGACTATTTAAATAATTATCTATTTC
130 GTTTACCGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTC
* * * * * * * * *
125608 AAATAATTGTGACCTTCTATTTTGTAATAAAATAATTGTTTC-AGTTAACATAAGCTTATTTGAA
1 AAATCATTATGACCTT-TGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTGGA
* * * * * *
125672 ATAAAATAGCT-TTAATTTATTAATA-TACCAAAAATTAATGAGTAAGAGAATTAAAAAA-AAAT
64 ATAAAATA-ATATTAATTTATTAATATTTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAAT
* * * * * *
125734 GAATTTGTTTATCGAAAAAGTTTAAATCGTTATGACTATCTAAATAATTATCTATTTC
128 --A--TGTTTACCGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTC
* * * * *
125792 AAAACATTATGACCATTTGTTTTGTCATAAAATAATTAGTTT-TGTTCATGCAAGCTTATTTTGA
1 AAATCATTATGACC-TTTGTTTTGTCATAAAACAATT-GTTTCTATTCATACAAGCTTATTTGGA
* ** *
125856 ATAAAATAATATAAATTTATTAA-AACTCTAAAAATTAATTAA-TAAAA-ATTTACAAAATAAAT
64 ATAAAATAATATTAATTTATTAATATTTCTAAAAATTAA-TAAGTAAAAGATTTAAAAAATAAAT
*** * *
125918 ATGTTTTTTGAACACA--TTCAATACTTATGACTATTTGAACAATTATCTATTTC
128 ATGTTTACCGAACA-AGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTC
* ** * * * * ***
125971 AAATCGTTAAAACTATTTGTTTTGTCATAAACCAATTATTTCTATTCATACAAGCATATTCAAAA
1 AAATCATTATGAC-CTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGAA
* * *
126036 TAAAATAAAATTAATTTATTAATATTTCT-AAAATTAATAAGTAAAAGATTTAAATAATAAATTT
65 TAAAATAATATTAATTTATTAATATTTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATAT
* * * *
126100 GTTTACCGAGCAAGTTTAAATAGTTATTATTATTTGAACAATTATATATTTC
130 GTTTACCGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTC
* ** * *
126152 AAATCTTTATGTTCTTTGGTTTTGTCATAAAACAATTGTTTCTATTCACACAAGTTTATTTGGAA
1 AAATCATTATGACCTTT-GTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGAA
* * * * *
126217 TAAAATAATACTAATTTATTATTA-TTCTAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCT
65 TAAAATAATATTAATTTATTAATATTTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATAT
* * * * * **
126281 GTTTACCAAATAATTTTAAATAGTCATGTCTATTTGAACTGTTATCTATTTC
130 GTTTACCGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTC
*
126333 AAATCGTTATGA
1 AAATCATTATGA
126345 TATTTTGTTT
Statistics
Matches: 587, Mismatches: 125, Indels: 50
0.77 0.16 0.07
Matches are distributed among these distances:
178 6 0.01
179 111 0.19
180 50 0.09
181 274 0.47
182 3 0.01
183 10 0.02
184 125 0.21
185 8 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (181 bp):
AAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGAAT
AAAATAATATTAATTTATTAATATTTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATG
TTTACCGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTC
Found at i:126463 original size:137 final size:141
Alignment explanation
Indices: 126216--126491 Score: 312
Period size: 137 Copynumber: 2.0 Consensus size: 141
126206 TTTATTTGGA
*
126216 ATAAAATAATACTAATTTATTATTATTCTAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCT
1 ATAAAATAATACTAATTTATTACTATTCTAAAAATTAATAA--TAGAGATTTAAAAAATAAATCT
* * * * ** ** * *
126281 GTTTACCAAATAATTTTAAATAGTCATGTCTATTTGAACTGTTATCTATTTCAAATCGTTATGAT
64 GTTTACCAAACAATTTCAAATAGTCAAGACTATTAAAACAATTATCTATTCCAAATCATTATGAT
126346 ATTTTGTTTTATT
129 ATTTTGTTTTATT
*
126359 ATAAAATAATACTAATTTATTACTATT-TCAAAAATTAAT-A-AG-GATTT-AAAAATAAATGTG
1 ATAAAATAATACTAATTTATTACTATTCT-AAAAATTAATAATAGAGATTTAAAAAATAAATCTG
* * * * *
126419 TTTTCCGAAACGA-TTCAAATAGTTAAGACTATTAAAACAATTATCTATTCCAAATTATTCTGAT
65 TTTACC-AAACAATTTCAAATAGTCAAGACTATTAAAACAATTATCTATTCCAAATCATTATGAT
*
126483 CTTTTGTTT
129 ATTTTGTTT
126492 AGTCAAAAAA
Statistics
Matches: 113, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
137 64 0.57
138 9 0.08
139 2 0.02
142 2 0.02
143 36 0.32
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (141 bp):
ATAAAATAATACTAATTTATTACTATTCTAAAAATTAATAATAGAGATTTAAAAAATAAATCTGT
TTACCAAACAATTTCAAATAGTCAAGACTATTAAAACAATTATCTATTCCAAATCATTATGATAT
TTTGTTTTATT
Found at i:127330 original size:182 final size:178
Alignment explanation
Indices: 126359--127760 Score: 828
Period size: 181 Copynumber: 7.9 Consensus size: 178
126349 TTGTTTTATT
* * *
126359 ATAAAATAATACTAATTTATTACTATTTCAAAA--ATTAA-TAAG-GATTT-AAAAATAAATGTG
1 ATAAAATAATACTAATTTATTAATATTTCAAAATTAATAAGTAAGAGATTTAAAAAAT-AATTTG
* * * * * * * *
126419 TTTTCCGAAAC-GATTCAAATAGTTAAGACTATTAAAACAATTATCTATTCCAAATTATTCTGAT
65 TTTACTGAACCAG-TTCAAATAGTTAAGACTATTTAAACAATTATTTATTTCAAATCATTATGA-
* * * * * * * *
126483 C-TTTTGTTTAGTCAAAAAATAA-CTGTTTCAGTTCATACATGCTTA-TCTGAA
128 CATTTTGTTTTGTCATAAAACAATTTTTTTCATTTCATA-A-ACTTATTC-GGA
* * * * * * *
126534 ATATAGTTATACTAATTTATTAAAATTTAGAAAATTAATAAG--A-AG-TTTTAAAAA-AATTTA
1 ATAAAATAATACTAATTTATTAATATTT-CAAAATTAATAAGTAAGAGATTTAAAAAATAATTTG
** ** * * * * *
126594 TTTACCCAATAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTAAAATCATTATGACA
65 TTTACTGAACCAGTTCAAATAGTTAAGACTATTTAAACAATTATTTATTTCAAATCATTATGACA
* * * * * * * * **
126659 TTTTATTTTATCATAAAACAA-CTGTTTCAGTACATAAAAGTTTTTCCAAA
130 TTTTGTTTTGTCATAAAACAATTTTTTTCATTTCAT-AAACTTATT-CGGA
* ** ** * ** * **
126709 ATAAAGTAATTTTGCTTTATTAATATTTCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATAA
1 ATAAAATAATACTAATTTATTAATATTTC-AAAATTAATAAGTAAGAGATTTAAAAAAT-AATTT
* ** * * * * * * * * *
126774 GTTTA-TAAAATTA-TTCAAATAATCATGGCCATTTGAATAGTTATCTATTTCAAATCATTATGA
64 GTTTACT-GAACCAGTTCAAATAGTTAAGACTATTTAAACAATTATTTATTTCAAATCATTATGA
*
126837 -ACTTTTGTTTTGTCATAAAACAATTGTTTTTCA--TCATAAAGCCTATGT-GGA
128 CA-TTTTGTTTTGTCATAAAACAATT-TTTTTCATTTCATAAA-CTTAT-TCGGA
* * *
126888 ATAAAATAATATTAATTTACTAATATTTCAAAAATTAAT-A--AA-AGATTTAAAAAGTTAATTT
1 ATAAAATAATACTAATTTATTAATATTTC-AAAATTAATAAGTAAGAGATTTAAAAA-ATAATTT
* * * * ** *
126949 GTTTACTGAACCAGTTCAAATAGTTATGACTCTTTGAACAATTATATATTTCAAATTGTTATAAC
64 GTTTACTGAACCAGTTCAAATAGTTAAGACTATTTAAACAATTATTTATTTCAAATCATTATGAC
* * * * * ** **
127014 ATTTTGTTATCTCATAAAGCAA-TTATTTC-TATTCACACGAGTTTATTCAAA
129 ATTTTGTTTTGTCATAAAACAATTTTTTTCAT-TTCATA--AACTTATTCGGA
* * *
127065 ATAAAATAATACTAATATAATAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTT
1 ATAAAATAATACTAATTTATTAATATT-TCAAAATTAATAAGTAAGAGATTTAAAAAAT-AATTT
* * * * * * * *
127130 GTTTACTGAACTAGTTCAAATATTTAAGGCTATATGAATAATTCTTTATTTCAAATAATTATGAC
64 GTTTACTGAACCAGTTCAAATAGTTAAGACTATTTAAACAATTATTTATTTCAAATCATTATGAC
*
127195 ATTTTGTTTTGTCATAAAACAATTTTTTTCATTTCTTAGTAACTTATTCGGA
129 ATTTTGTTTTGTCATAAAACAATTTTTTTCATTTCATA--AACTTATTCGGA
* * * *
127247 ATAAAGTAAAACAAATTTATTAATATTTCAAAACTTAATAAGCAAGAGATTTAAAAAATAATTTA
1 ATAAAATAATACTAATTTATTAATATTTCAAAA-TTAATAAGTAAGAGATTTAAAAAATAATTT-
* * *
127312 GTTTTCCT-AACCAGTTCAAATAATTATA-ACTATTTAAACAATTATCTATTTCAAATCATTATG
64 G-TTTACTGAACCAGTTCAAATAGTTA-AGACTATTTAAACAATTATTTATTTCAAATCATTATG
* * **
127375 TGC-TTTTATTTTGTCATAAAACAAATGTTTTTGTACA--T-ATAAGTTTGA-TCGGA
127 -ACATTTTGTTTTGTCATAAAAC-AAT-TTTTT-T-CATTTCATAAACTT-ATTCGGA
* * * * * **
127428 ATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAGTAAGAAATTTAAAAAGTAAAACT
1 ATAAAATAATACTAATTTATTAATA-TTTCAAAATTAATAAGTAAGAGATTTAAAAAAT-AATTT
* * * * *
127493 ATTTACTAAACCAATTCAATTAGTTAAAACTATTTAAACAATTATTTATTTCAAATCATTATGAC
64 GTTTACTGAACCAGTTCAAATAGTTAAGACTATTTAAACAATTATTTATTTCAAATCATTATGAC
** * * *
127558 A-TTTGTAATGTCATAAAATAA-TTATTT-ATGTTCATACAATCTTATTCGAA
129 ATTTTGTTTTGTCATAAAACAATTTTTTTCAT-TTCATA-AA-CTTATTCGGA
* * ** * ***
127608 ATAAAGTAATACTAATTTATCAATATTTTGAAATTAATAAGTAATAGATTTAAAAAATGAATCAA
1 ATAAAATAATACTAATTTATTAATATTTCAAAATTAATAAGTAAGAGATTTAAAAAAT-AATTTG
** * * * * * *
127673 TTGGCATG-ACCAGTACAAATAGTTATGACTGTTTAAATAATTATCTATTTTAAATCATTATGAC
65 TTTAC-TGAACCAGTTCAAATAGTTAAGACTATTTAAACAATTATTTATTTCAAATCATTATGAC
* * * *
127737 CTTTTGTTTTATCACAAAATAATT
129 ATTTTGTTTTGTCATAAAACAATT
127761 GTTTCATCAC
Statistics
Matches: 954, Mismatches: 206, Indels: 128
0.74 0.16 0.10
Matches are distributed among these distances:
174 9 0.01
175 163 0.17
176 75 0.08
177 50 0.05
178 13 0.01
179 131 0.14
180 137 0.14
181 210 0.22
182 144 0.15
183 13 0.01
184 6 0.01
185 1 0.00
186 2 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (178 bp):
ATAAAATAATACTAATTTATTAATATTTCAAAATTAATAAGTAAGAGATTTAAAAAATAATTTGT
TTACTGAACCAGTTCAAATAGTTAAGACTATTTAAACAATTATTTATTTCAAATCATTATGACAT
TTTGTTTTGTCATAAAACAATTTTTTTCATTTCATAAACTTATTCGGA
Found at i:127394 original size:363 final size:357
Alignment explanation
Indices: 126359--128129 Score: 1137
Period size: 363 Copynumber: 4.9 Consensus size: 357
126349 TTGTTTTATT
* * *
126359 ATAAAATAATACTAATTTATTACTATTTCAAAAATT---AA-TAAG-GATTT-AAAAATAAATGT
1 ATAAAATAATATTAATTTATTAATATTT-AAAAATTAAGAAGTAAGAGATTTAAAAAATAAATAT
* * * * * ** * * * * *
126418 GTTTTCCGAAACGATTCAAATAGTTAAGACTATTAAAACAATTATCTATTCCAAATTATTCTGAT
65 G-TTTACTAAACTATTCAAATAATTAAGGCTATTTGAATAATTATTTATTTCAAATCATTATGA-
* * * * * * * * * *
126483 C-TTTTGTTTAGTCAAAAAATAA-CTGTTTCAGTTCATACATGCTTA-TCTGAAATATAGTTATA
128 CATTTTGTTTTGTCATAAAACAATTTTTTTCATTTCATA-AAGCTTATTC-GGAATAAAGTAATA
* * * * * **
126545 CTAATTTATTAAAATTTAGAAAATTAATAAG-AAG-TTTTAAAAA-AATTTA-TTTACCCAATAA
191 CTAATTTATTAATATTT-CAAAATTAATAAGAAAGATTTAAAAAATAATTTAGTTTTCCTAACCA
* * *
126606 GTTCAAATAGTTATGACTATTTGAATAATTATCTATTTAAAATCATTATGACATTTTATTTTATC
255 GTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACATTTTATTTTATC
*
126671 ATAAAACAACTGTTTC-AGTACATAAAAGTTT-TTCCAAA
320 ATAAAACAAATGTTTCTA-TACATAAAAGTTTATT-CAAA
* * ** ** * *
126709 ATAAAGTAATTTTGCTTTATTAATATTTCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATAA
1 ATAAAATAATATTAATTTATTAATATTT-AAAAATTAAGAAGTAAGAGATTTAAAAAATAAATAT
* * * * * *
126774 GTTTA-TAAAATTATTCAAATAATCATGGCCATTTGAATAGTTATCTATTTCAAATCATTATGA-
65 GTTTACT-AAACTATTCAAATAATTAAGGCTATTTGAATAATTATTTATTTCAAATCATTATGAC
* *
126837 ACTTTTGTTTTGTCATAAAACAATTGTTTTTCA--TCATAAAGCCTATGT-GGAATAAAATAATA
129 A-TTTTGTTTTGTCATAAAACAATT-TTTTTCATTTCATAAAGCTTAT-TCGGAATAAAGTAATA
* * * *
126899 TTAATTTACTAATATTTCAAAAATTAAT-A-AAAGATTTAAAAAGTTAATTT-G-TTTACTGAAC
191 CTAATTTATTAATATTTC-AAAATTAATAAGAAAGATTTAAAAA-ATAATTTAGTTTTCCT-AAC
* * * ** * * * *
126960 CAGTTCAAATAGTTATGACTCTTTGAACAATTATATATTTCAAATTGTTATAACATTTTGTTATC
253 CAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACATTTTATTTTA
* * * * * **
127025 TCATAAAGCAATTATTTCTATTCACACGAGTTTATTCAAA
318 TCATAAAACAAATGTTTCTATACATAAAAGTTTATTCAAA
* * * * *
127065 ATAAAATAATACTAATATAATAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTT
1 ATAAAATAATATTAATTTATTAATATT-TAAAAATTAAGAAGTAAGAGATTTAAAAAATAAATAT
* * * * *
127130 GTTTACTGAACTAGTTCAAATATTTAAGGCTATATGAATAATTCTTTATTTCAAATAATTATGAC
65 GTTTACTAAACTA-TTCAAATAATTAAGGCTATTTGAATAATTATTTATTTCAAATCATTATGAC
* *
127195 ATTTTGTTTTGTCATAAAACAATTTTTTTCATTTCTTAGTAA-CTTATTCGGAATAAAGTAAAAC
129 ATTTTGTTTTGTCATAAAACAATTTTTTTCATTTCATA--AAGCTTATTCGGAATAAAGTAATAC
*
127259 AAATTTATTAATATTTCAAAACTTAATAAGCAAGAGATTTAAAAAATAATTTAGTTTTCCTAACC
192 TAATTTATTAATATTTCAAAA-TTAATAAG-AA-AGATTTAAAAAATAATTTAGTTTTCCTAACC
* * * *
127324 AGTTCAAATAATTATAACTATTTAAACAATTATCTATTTCAAATCATTATGTGC-TTTTATTTTG
254 AGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATG-ACATTTTATTTTA
* * * **
127388 TCATAAAACAAATGTTTTTGTACATATAAGTTTGA-TCGGA
318 TCATAAAACAAATGTTTCTATACATAAAAGTTT-ATTCAAA
* * *
127428 ATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAGTAAGAAATTTAAAAAGTAAA-AC
1 ATAAAATAATATTAATTTATTAATA-TTTAAAAATTAAGAAGTAAGAGATTTAAAAAATAAATA-
* * * * ** * *
127492 TATTTACTAAACCAATTCAATTAGTTAAAACTATTTAAACAATTATTTATTTCAAATCATTATGA
64 TGTTTACTAAA-CTATTCAAATAATTAAGGCTATTTGAATAATTATTTATTTCAAATCATTATGA
** * * * *
127557 CA-TTTGTAATGTCATAAAATAA-TTATTT-ATGTTCATACAATCTTATTCGAAATAAAGTAATA
128 CATTTTGTTTTGTCATAAAACAATTTTTTTCAT-TTCATA-AAGCTTATTCGGAATAAAGTAATA
* ** * * ** * *
127619 CTAATTTATCAATATTTTGAAATTAATAAGTAATAGATTTAAAAAATGAA-TCAATTGGCATGAC
191 CTAATTTATTAATATTTCAAAATTAATAAG-AA-AGATTTAAAAAAT-AATTTAGTTTTCCTAAC
* * * * * *
127683 CAGTACAAATAGTTATGACTGTTTAAATAATTATCTATTTTAAATCATTATGACCTTTTGTTTTA
253 CAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACATTTTATTTTA
* * * *
127748 TCACAAAATAATTGTTTC-ATCACAAAACAATTGTTTTTATTTGTACTAGCTTATTTCAA
318 TCATAAAACAAATGTTTCTAT-ACATAA-AA--G--TTTA----T--T--C--A----AA
* * * *
127807 ATAATATAAT-TCTATTTTATTAATATTCTAAAAATT---AA-TAAGAGATTTAAAAAATGAATC
1 ATAAAATAATAT-TAATTTATTAATATT-TAAAAATTAAGAAGTAAGAGATTTAAAAAATAAATA
* * * * ** * * ** * *
127867 TGTTTATTGAACAAGTACAAATAATTGTGACTATTTGAATAATTATCTATTTTTAATCACTATAA
64 TGTTTACTAAACTA-TTCAAATAATTAAGGCTATTTGAATAATTATTTATTTCAAATCATTATGA
* * ** * * *
127932 CCTTTTGTTTTGTCCTAAAACAA-AATTTTC-TATTCATACAAGCTTATTTC-AAATAAAATTAT
128 CATTTTGTTTTGTCATAAAACAATTTTTTTCAT-TTCATA-AAGCTTA-TTCGGAATAAAGTAAT
* * *
127994 ACAAATTTATTAATA-TTCAGACAACTAATAAGTAAAAGATTTTAAAAAATAAATCTA-TTTAT-
190 ACTAATTTATTAATATTTCA-A-AATTAATAAG--AAAGA-TTTAAAAAAT-AATTTAGTTT-TC
* ** * * * * * * *
128056 CAAATAAGTTTAAATAATTATGACTATTTGAACAATTATTTATTTCAAATTATTATGACTTTTTG
248 CTAACCAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACATTTTA
*
128121 TTTTCTCAT
313 TTTTATCAT
128130 GACACAATTT
Statistics
Matches: 1097, Mismatches: 243, Indels: 134
0.74 0.16 0.09
Matches are distributed among these distances:
350 30 0.03
353 6 0.01
354 47 0.04
355 75 0.07
356 167 0.15
357 75 0.07
358 10 0.01
359 38 0.03
360 110 0.10
361 51 0.05
362 25 0.02
363 198 0.18
364 12 0.01
365 3 0.00
371 1 0.00
373 1 0.00
374 3 0.00
375 65 0.06
376 59 0.05
377 15 0.01
378 76 0.07
379 30 0.03
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (357 bp):
ATAAAATAATATTAATTTATTAATATTTAAAAATTAAGAAGTAAGAGATTTAAAAAATAAATATG
TTTACTAAACTATTCAAATAATTAAGGCTATTTGAATAATTATTTATTTCAAATCATTATGACAT
TTTGTTTTGTCATAAAACAATTTTTTTCATTTCATAAAGCTTATTCGGAATAAAGTAATACTAAT
TTATTAATATTTCAAAATTAATAAGAAAGATTTAAAAAATAATTTAGTTTTCCTAACCAGTTCAA
ATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACATTTTATTTTATCATAAAA
CAAATGTTTCTATACATAAAAGTTTATTCAAA
Found at i:127764 original size:19 final size:19
Alignment explanation
Indices: 127740--127784 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
127730 TTATGACCTT
*
127740 TTGTTTTATCACAAAATAA
1 TTGTTTTATCACAAAACAA
*
127759 TTGTTTCATCACAAAACAA
1 TTGTTTTATCACAAAACAA
127778 TTGTTTT
1 TTGTTTT
127785 TATTTGTACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.44
Consensus pattern (19 bp):
TTGTTTTATCACAAAACAA
Found at i:128575 original size:17 final size:18
Alignment explanation
Indices: 128544--128582 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
128534 CACAAATATT
*
128544 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
128562 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
128579 AATT
1 AATT
128583 GTTTGTTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:128613 original size:13 final size:13
Alignment explanation
Indices: 128597--128621 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
128587 GTTATGTAAT
128597 ATAATTATATAAC
1 ATAATTATATAAC
128610 ATAATTATATAA
1 ATAATTATATAA
128622 ATTTATAAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAATTATATAAC
Found at i:128911 original size:17 final size:15
Alignment explanation
Indices: 128869--128921 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 15
128859 TAATCTATAC
128869 AATTAGAATTAA-TTT
1 AATTA-AATTAATTTT
128884 AATTAAA-TAATTTT
1 AATTAAATTAATTTT
128898 AATTATCAATTAATTTAT
1 AATTA--AATTAATTT-T
128916 AATTAA
1 AATTAA
128922 TAAAAACTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
13 3 0.09
14 10 0.30
15 5 0.15
16 3 0.09
17 6 0.18
18 6 0.18
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATTAAATTAATTTT
Found at i:129077 original size:26 final size:26
Alignment explanation
Indices: 129048--129114 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
129038 AATACTTATA
129048 ATTTATTATTAATTATCTGAA-TATTG
1 ATTT-TTATTAATTATCTGAATTATTG
* * * *
129074 ATTTTAATTTAAATATTTTAATTATTG
1 ATTTTTA-TTAATTATCTGAATTATTG
129101 ATTTTTATTAATTA
1 ATTTTTATTAATTA
129115 ATATATATCT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.06
26 20 0.61
27 11 0.33
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.58
Consensus pattern (26 bp):
ATTTTTATTAATTATCTGAATTATTG
Found at i:129079 original size:27 final size:29
Alignment explanation
Indices: 129049--129116 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 29
129039 ATACTTATAA
129049 TTTATTATTAATTATCTGAA-TATTGA-T
1 TTTATTATTAATTATCTGAATTATTGATT
* * * *
129076 TTTAAT-TTAAATATTTTAATTATTGATT
1 TTTATTATTAATTATCTGAATTATTGATT
129104 TTTATTAATTAAT
1 TTTATT-ATTAAT
129117 ATATATCTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 10 0.32
27 11 0.35
28 6 0.19
30 4 0.13
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (29 bp):
TTTATTATTAATTATCTGAATTATTGATT
Found at i:129584 original size:181 final size:180
Alignment explanation
Indices: 129149--130266 Score: 747
Period size: 181 Copynumber: 6.1 Consensus size: 180
129139 TTTAGATCTA
* * * * * * * * * * *
129149 TTATTAATTTTTAAAATATTAATAGAGTAGTATTAATTTATTCCGAACAAACTTATATG-GATAA
1 TTATTAA-TTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGACAT-G
* * * * * * *
129213 AAACATTTGTTTTATGACAAAACAAAATG-TCATAATTATTTGAAATAAATAATTGTTCAAATAA
64 AAACAATTGTTTTATGATAAAACAAAA-GATAATAATGATTTAAAATAGATAATTGTTCAAATAG
* * * * *
129277 TTATAATTATTTGAACTGATT-AGGTAAGCAGAA-TTATTTGTTAAATCTC----
128 TCATAACTATTTGAACTGGTTCA-GTAAACA-AATTTATTTTTTAAATCTCTTAG
* * * *
129326 TTATTAATTTTTGAAATATTAATAAATTTA-TTTTATTTTA-TTCTGAATAAGCTAGTATGA-AT
1 TTATTAATTTTAG-AATATTAATAAA-TTAGTATTATTTTATTTC-AAATAAGCTTGTATGACA-
* * * * * *
129388 TGAAAAAAATGTTTTATGATAAAACAAAAGATCATAACGATTTAAAATATATAATTGTTCATATA
62 TGAAACAATTGTTTTATGATAAAACAAAAGATAATAATGATTTAAAATAGATAATTGTTCAAATA
* * *
129453 GTCTTAACTATTTAAACTGGTTCAGTAAATAAATTTATTTTTTAAATCTCTTAG
127 GTCATAACTATTTGAACTGGTTCAGTAAACAAATTTATTTTTTAAATCTCTTAG
* * *
129507 TTATTAATTTTCAGAGTATTATTAGATTAGTATTATTTTATTTCAAATAAGCTTGTATGAGCATG
1 TTATTAATTTT-AGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGA-CATG
* * * * * *
129572 -AATAATTGTTTTATGATAGAACAAAAAAGGTTCATTTTTTAAATAATTGATTTAAACTATACAT
64 AAACAATTGTTTTATGATA-AA-ACAAAA-G---A-----T-AATAA-TGATTTAAAATAGATAA
* * * * * *
129636 TTGTTCAAATAGTCATAACTATTT-AAATGGGTTTAATAAATAAATTTATTTTTTAAATTTCTTT
116 TTGTTCAAATAGTCATAACTATTTGAACT-GGTTCAGTAAACAAATTTATTTTTTAAATCTCTTA
*
129700 C
180 G
* * * *
129701 TTACTAACTTTT-GAAATATTAATAAATTAGTATTATTTTA-TTCTAAAT---CTTATATGATAA
1 TTATTAA-TTTTAG-AATATTAATAAATTAGTATTATTTTATTTC-AAATAAGCTTGTATGACAT
* * ** * * * *
129761 AAAACAATTGTTATATGACCAAACAAAAGGTAATATTGATTTCAAATAGATAATTGTTAAAATAG
63 GAAACAATTGTTTTATGATAAAACAAAAGATAATAATGATTTAAAATAGATAATTGTTCAAATAG
* * ** * * * *
129826 CCATAATTATTTGAACTAATTCAGTAAACAAAATCATTTTTTAAATCACTTAC
128 TCATAACTATTTGAACTGGTTCAGTAAACAAATTTATTTTTTAAATCTCTTAG
* * * * *
129879 TTATTAATTTTTGGAATATTAATAAATTACTATTATTTTGTTTCGAATAAGCTTGTATGA-ACCG
1 TTATTAA-TTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGACA-TG
* * * * * *
129943 AAACAATTATTTTATAATAAAACAAAAGATTATAATGATTTTAAATAGATAAATGTTTAAATAGT
64 AAACAATTGTTTTATGATAAAACAAAAGATAATAATGATTTAAAATAGATAATTGTTCAAATAGT
* * * *
130008 CATAACTATTTGAATTTGTTCAATAAACAAATTAATTTTTTTAAA-CTCTT-G
129 CATAACTATTTGAACTGGTTCAGTAAACAAATTTA-TTTTTTAAATCTCTTAG
* * * * *
130059 CTTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTAGATAAGCTTTTATGA-ATT
1 -TTATTAATTTTAG-AATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGACA-T
* * * * * * *
130123 GAAACAATTGTTTTTTG-TCAAAACAAAAGGTCATAACGATTTTAAATAAATAATTGTTTAAATA
63 GAAACAATTGTTTTATGAT-AAAACAAAAGATAATAATGATTTAAAATAGATAATTGTTCAAATA
* * * * * *
130187 GTTAGAACTATTTGAACTTGATC-GATAAACAAATTTATTTTTTTATATCT-TTTG
127 GTCATAACTATTTGAACTGGTTCAG-TAAACAAATTTA-TTTTTTAAATCTCTTAG
* *
130241 CTTATTAATTTTTTGAATGTTAATAA
1 -TTATTAA-TTTTAGAATATTAATAA
130267 TTAAAATTTT
Statistics
Matches: 748, Mismatches: 143, Indels: 95
0.76 0.15 0.10
Matches are distributed among these distances:
176 9 0.01
177 126 0.17
178 100 0.13
179 11 0.01
180 11 0.01
181 294 0.39
182 37 0.05
183 12 0.02
184 1 0.00
187 1 0.00
188 1 0.00
189 5 0.01
190 3 0.00
191 22 0.03
192 1 0.00
193 11 0.01
194 99 0.13
195 4 0.01
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.43
Consensus pattern (180 bp):
TTATTAATTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGACATGAA
ACAATTGTTTTATGATAAAACAAAAGATAATAATGATTTAAAATAGATAATTGTTCAAATAGTCA
TAACTATTTGAACTGGTTCAGTAAACAAATTTATTTTTTAAATCTCTTAG
Found at i:130304 original size:14 final size:14
Alignment explanation
Indices: 130265--130308 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
130255 GAATGTTAAT
*
130265 AATTAAAATTTTTA
1 AATTAAAATATTTA
*
130279 AATTTTAAATATTTA
1 AA-TTAAAATATTTA
130294 AATTAAAATATTTA
1 AATTAAAATATTTA
130308 A
1 A
130309 TTTTTTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATTAAAATATTTA
Found at i:130986 original size:183 final size:182
Alignment explanation
Indices: 130574--131179 Score: 594
Period size: 181 Copynumber: 3.4 Consensus size: 182
130564 TTTAACTAGC
* * *
130574 TATGACTATTTGAACAATTGTCTATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAACAATT
1 TATGATTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTATCATAAAACAATT
** * *
130639 GTTT-TAGTTCATACAAGCTTATTCAAAATAAAATAAAACTAATTTATTAATATTCCAAAAATTA
66 GTTTCTAGTTCATACAAAATTATTCAAAATAAAAAAAAACTAATTTATTAACATTCCAAAAATTA
* * * * * *
130703 ATAACTAAGTGATTTAAAAAGTTAATTTGTTTATCGAATCAGTTCAAATAGT
131 ATAACTAAGAGATTTAAAAAATAAATTTGTTAATCAAATAAGTTCAAATAGT
* * * * * *
130755 CATG-TCCATTTGAATAATTATTTATTTCAAATCATTATGACCTTTTGTTTTTTCATAAAACAAT
1 TATGAT-TATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTATCATAAAACAAT
* * * * **
130819 TCTTTCTA-TTCATGCAAAATTATTCAAAATAAAAAAAATATTTATTTATTAACATTCTGAAAAT
65 TGTTTCTAGTTCATACAAAATTATTCAAAATAAAAAAAA-ACTAATTTATTAACATTCCAAAAAT
*
130883 TAATAAGTAAGAGATTTGAAAAAATAAATTTGTTAAAT-AAATAAGTTCAAATAGT
129 TAATAACTAAGAGATTT-AAAAAATAAATTTGTT-AATCAAATAAGTTCAAATAGT
** *
130938 TATGATTATTTGAACAATTATCTATTTAAAATTGTTATGAACTTTTGTTTTATCATAAAACAATT
1 TATGATTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTATCATAAAACAATT
* * * * * *
131003 GTTTC-AG-T-ATA-AAAACTTATGCAAAATAAAATAATACTACTTTATTAATATTTCAAAAA-T
66 GTTTCTAGTTCATACAAAA-TTATTCAAAATAAAAAAAAACTAATTTATTAACATTCCAAAAATT
** * * * *
131063 --TAA-TAAGAGATTTAAAAAATAAATCAGCTTACT-AAATTAGATCAAATAAT
130 AATAACTAAGAGATTTAAAAAATAAATTTG-TTAATCAAATAAGTTCAAATAGT
*** * * * * ** *
131113 TATG--GCCTTCAATAATTATCTATTTCAAATCATTATTACCTTTCATTTTGTCATAAAACAATT
1 TATGATTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTATCATAAAACAATT
131176 GTTT
66 GTTT
131180 TCCAATATAC
Statistics
Matches: 351, Mismatches: 65, Indels: 26
0.79 0.15 0.06
Matches are distributed among these distances:
173 50 0.14
175 32 0.09
176 12 0.03
177 3 0.01
179 1 0.00
180 21 0.06
181 103 0.29
182 39 0.11
183 87 0.25
184 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (182 bp):
TATGATTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTATCATAAAACAATT
GTTTCTAGTTCATACAAAATTATTCAAAATAAAAAAAAACTAATTTATTAACATTCCAAAAATTA
ATAACTAAGAGATTTAAAAAATAAATTTGTTAATCAAATAAGTTCAAATAGT
Found at i:131230 original size:65 final size:67
Alignment explanation
Indices: 131145--131274 Score: 205
Period size: 65 Copynumber: 2.0 Consensus size: 67
131135 TTTCAAATCA
*
131145 TTATTACCTTTCATTTTGTCATAAAACAATTG-TTTTCCAATATACAAGCTTA-TT-AAATAAAA
1 TTATTACCTTTCATTTTGTCATAAAACAATTGCTTTT-CAACATACAAGCTTATTTGAAATAAAA
131207 TTG
65 TTG
131210 TTATTACCTTTC-TTTCTGTCATAAAACAATTGCTTTTCAACATACAAGCTTATTTGAAATAAAA
1 TTATTACCTTTCATTT-TGTCATAAAACAATTGCTTTTCAACATACAAGCTTATTTGAAATAAAA
131274 T
65 T
131275 AATACTAATT
Statistics
Matches: 60, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
64 3 0.05
65 42 0.70
66 6 0.10
67 9 0.15
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.42
Consensus pattern (67 bp):
TTATTACCTTTCATTTTGTCATAAAACAATTGCTTTTCAACATACAAGCTTATTTGAAATAAAAT
TG
Found at i:131364 original size:54 final size:56
Alignment explanation
Indices: 131273--131384 Score: 210
Period size: 54 Copynumber: 2.0 Consensus size: 56
131263 TTGAAATAAA
131273 ATAATACTAATTTTTTAATATTTCAAGAATTAGTAAGAGATTTAAAAAATAAATCT
1 ATAATACTAATTTTTTAATATTTCAAGAATTAGTAAGAGATTTAAAAAATAAATCT
131329 ATAATACTAATTTTTT-A-ATTTCAAGAATTAGTAAGAGATTTAAAAAATAAATCT
1 ATAATACTAATTTTTTAATATTTCAAGAATTAGTAAGAGATTTAAAAAATAAATCT
131383 AT
1 AT
131385 TTACCAAACC
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
54 39 0.70
55 1 0.02
56 16 0.29
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.39
Consensus pattern (56 bp):
ATAATACTAATTTTTTAATATTTCAAGAATTAGTAAGAGATTTAAAAAATAAATCT
Found at i:133249 original size:182 final size:181
Alignment explanation
Indices: 132820--133479 Score: 696
Period size: 181 Copynumber: 3.6 Consensus size: 181
132810 TAGATAATTG
* * *
132820 TTATGATTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCA-ACAAGCTTATTCGGATTAAAAT
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAAT
* * * * * *
132884 AATATTAATTTATTAATACTTCGATAATTAATAAGTAAAAGATTTTAAAAAATAAATATATTTAC
65 AATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGAATTAAAAAAATAAATTTATTTAC
* * *
132949 TAAAGAAGTTCAAATAGTCTA--ATTATTTGAATAATTATCTATTTCAAATCA
130 TAAAAAAGTTCAAATAGT-TATGATTATTTAAACAATTATCTATTTCAAATCA
* * * * * * * *
133000 TTATGACATTTTGTTTTGTAATAAAATAATTGTTTC-AGTTAATATAA-ATTATTTAAAATAAAA
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTA-TTCATACAAGCTTATTCAGAAT-AAA
* * * * * *
133063 ATAATACTAATTTATTAATATTTCAAAAATGAATGAGTAAGAGAATTAAAAAAATGAATTTGTTT
63 ATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGAATTAAAAAAATAAATTTATTT
*
133128 ACTAAAAAAGTTCAAATAGTTATGATTATCTAAACAATTATCTATTTCAACA-CA
128 ACTAAAAAAGTTCAAATAGTTATGATTATTTAAACAATTATCTATTTCAA-ATCA
**
133182 TTATGACTTTTTGTTTTGTCAAAAAGCAATTGGATCTATTCATGA-AAGCTTATTTC-GAATAAA
1 TTATGACTTTTTGTTTTGTCAAAAA-CAATTGTTTCTATTCAT-ACAAGCTTA-TTCAGAATAAA
* * * * *
133245 ATAATATAAATTTATTAATA-TTCAAAAAATTAATAA--ATAATAATTTAAACAATAAATTTATT
63 ATAATATTAATTTATTAATATTTC-AAAAATTAATAAGTAAAAGAATTAAAAAAATAAATTTA-T
** * * * * * * **
133307 TTTTTGAACATGTTTAAATAGTAATGACTATTTAAACAATTATCTATTTCAAATTG
126 TTACTAAAAAAGTTCAAATAGTTATGATTATTTAAACAATTATCTATTTCAAATCA
* * *
133363 TTATGACTATTTGTTTTGTGATAAATCAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAAT
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAAT
*
133428 AATATTAATTTATTAAAATTTCAAAAATTAATAAGTAAAAG-ATTAAAAAAAT
65 AATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGAATTAAAAAAAT
133480 CTATTTACCA
Statistics
Matches: 391, Mismatches: 69, Indels: 38
0.79 0.14 0.08
Matches are distributed among these distances:
179 1 0.00
180 66 0.17
181 207 0.53
182 103 0.26
183 12 0.03
184 2 0.01
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (181 bp):
TTATGACTTTTTGTTTTGTCAAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAATA
ATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGAATTAAAAAAATAAATTTATTTACT
AAAAAAGTTCAAATAGTTATGATTATTTAAACAATTATCTATTTCAAATCA
Found at i:133544 original size:18 final size:18
Alignment explanation
Indices: 133513--133581 Score: 59
Period size: 18 Copynumber: 3.7 Consensus size: 18
133503 ATAATTTTTA
**
133513 TAATAATTCTTATAATAT
1 TAATAATTAATATAATAT
133531 TAATAATTAATATAAT-T
1 TAATAATTAATATAATAT
* *
133548 TATTCAATTAAACAATAATAT
1 TAAT-AATT-AA-TATAATAT
*
133569 TAATAATTTATAT
1 TAATAATTAATAT
133582 TCTTATTGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
18 20 0.50
19 3 0.08
20 9 0.22
21 4 0.10
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATAATTAATATAATAT
Found at i:135368 original size:278 final size:279
Alignment explanation
Indices: 134909--135447 Score: 881
Period size: 278 Copynumber: 1.9 Consensus size: 279
134899 GATAATATTG
* * *
134909 ATAATTCTTTATGAGCAGTTTTTCAATATACATTTAGTTTTATTCTTAGTTTTTCACACAGTTTT
1 ATAATTCTTTATGAGCAGTTTTTCAATATACATTTAGTTTTACTCTTAATTTTCCACACAGTTTT
* * *
134974 TATTTCTTAGTTTTTCTACATGGTATGAGAGCTAGGACTTTCTTTCTATTGCCCTTTCCTAATTT
66 TATTTCTTAGTTTTTCCACATGATATGAGAGCCAGGACTTTCTTTCTATTGCCCTTTCCTAATTT
* * *
135039 GTCACATGGAAGGCTTCTTTCCTCTTAACTTACATGTGATAGGGTCCTGTTAAAAGTTTAAATAA
131 GTCACACGGAAGGCTTATTTCCTCTTAACTTACA-GTGATAGGGGCCTGTTAAAAGTTTAAATAA
135104 CTAATATTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTAT
195 CTAATATTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTAT
135169 ACAAGCACATAATTGCTTGT
260 ACAAGCACATAATTGCTTGT
*
135189 ATAATTCTTT-TAGAGTAGTTTTTCAATATACATTTAGTTTTACTCTTAATTTTCCACACAG-TT
1 ATAATTCTTTAT-GAGCAGTTTTTCAATATACATTTAGTTTTACTCTTAATTTTCCACACAGTTT
* *
135252 TTATTTTTTAGTTTTTCCACATGATATGAG-GCCAGGACTTTCTTTCTGTTGCCCTTTCCTAATT
65 TTATTTCTTAGTTTTTCCACATGATATGAGAGCCAGGACTTTCTTTCTATTGCCCTTTCCTAATT
*
135316 TGTCACGCGGAAGGCTTATTTCCTCTTCAACTATAC-GTGAT-GGAGGCCTGTTAAAAGTTTAAA
130 TGTCACACGGAAGGCTTATTTCCTCTT-AACT-TACAGTGATAGG-GGCCTGTTAAAAGTTTAAA
135379 TAACTAATATTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTAT
192 TAACTAATATTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTAT
135444 TATA
257 TATA
135448 TAAACACTTT
Statistics
Matches: 242, Mismatches: 13, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
277 2 0.01
278 148 0.61
279 34 0.14
280 58 0.24
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (279 bp):
ATAATTCTTTATGAGCAGTTTTTCAATATACATTTAGTTTTACTCTTAATTTTCCACACAGTTTT
TATTTCTTAGTTTTTCCACATGATATGAGAGCCAGGACTTTCTTTCTATTGCCCTTTCCTAATTT
GTCACACGGAAGGCTTATTTCCTCTTAACTTACAGTGATAGGGGCCTGTTAAAAGTTTAAATAAC
TAATATTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTATA
CAAGCACATAATTGCTTGT
Found at i:135579 original size:22 final size:22
Alignment explanation
Indices: 135554--135597 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
135544 ATTTTTTGTC
* *
135554 CTTAATTCTAGGGATACAAATA
1 CTTAACTCTAGAGATACAAATA
135576 CTTAACTCTAGAGATACAAATA
1 CTTAACTCTAGAGATACAAATA
135598 TAAATATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (22 bp):
CTTAACTCTAGAGATACAAATA
Found at i:135835 original size:14 final size:14
Alignment explanation
Indices: 135816--135842 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
135806 TTCCACAAAA
135816 GTTTCTTATCGATT
1 GTTTCTTATCGATT
135830 GTTTCTTATCGAT
1 GTTTCTTATCGAT
135843 CAAATTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (14 bp):
GTTTCTTATCGATT
Found at i:136163 original size:179 final size:179
Alignment explanation
Indices: 135850--136441 Score: 531
Period size: 180 Copynumber: 3.3 Consensus size: 179
135840 GATCAAATTG
* * * * * *
135850 AAATAGCTATGACT-TTCTAAACAATTATCTATTTTAAAACATTATGACATTTTGTGTTGTCATA
1 AAATAGTTATGACTATT-TGAACAATTATCTATTTCAAATCATTATGACA-TTTGTTTTTTCATA
* * * * *
135914 AAACAATTGA-TTATGTTCATGCAAGAATATTTTGAATAAAATAATATAAATTTTTAATATTTCA
64 AAACAATT-ATTTCTGTTCATACAAGATTATTTGGAATAAAATAATATAAATTATTAATATTTCA
* * *
135978 AAAATTAATAAGTATAA-TTTTAGAAAATAAAGCTATTT-TCTGAATACA-TTC
128 AAAATTAATAAGTAAAAGATTTAAAAAATAAAGCTATTTATC-GAATA-AGTTC
*
136029 AAATTGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTTTCAT-A
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CATTTGTTTTTTCATAA
* * *
136093 AACTAATTATTTCTGTTCAAACAAGCTTATTTGGAATAAAATAAT-TCTAATTAATTAATA-TTC
65 AAC-AATTATTTCTGTTCATACAAGATTATTTGGAATAAAATAATAT-AAATT-ATTAATATTTC
* * ** * *
136156 CAAAATTAATAAGTAAAAGATTTAAAAAATGAATTTGTTTATCGAGTAAGTTC
127 AAAAATTAATAAGTAAAAGATTTAAAAAATAAAGCTATTTATCGAATAAGTTC
* * * *
136209 AAATAGTTATGATTGTTTGAACAATTATTTATTTCAAATCATTATGATCTTTTGTTTTGTT-ATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CATTTGTTTT-TTCATA
** * * ** *
136273 AAACAATCGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATATTGATATATTAACA-TTCT
64 AAACAATTATTTCTGTTCATACAAGATTATTTGGAATAAAATAATATAAAT-TATTAATATTTC-
** * * * * **
136337 AAAAATTAATAAGTTGAAGATTTAAAAAATTAA-TTAGTTTACCTAACCAGTTC
127 AAAAATTAATAAGTAAAAGATTTAAAAAATAAAGCTA-TTTATCGAATAAGTTC
* * * * * **
136390 AAATAGTCATGTCCATTTCAACTATTATCTATTTCAAATTGTTATGACATTT
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACATTT
136442 TATTTTGTTG
Statistics
Matches: 340, Mismatches: 58, Indels: 29
0.80 0.14 0.07
Matches are distributed among these distances:
178 6 0.02
179 107 0.31
180 140 0.41
181 87 0.26
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.42
Consensus pattern (179 bp):
AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACATTTGTTTTTTCATAAA
ACAATTATTTCTGTTCATACAAGATTATTTGGAATAAAATAATATAAATTATTAATATTTCAAAA
ATTAATAAGTAAAAGATTTAAAAAATAAAGCTATTTATCGAATAAGTTC
Found at i:136764 original size:180 final size:177
Alignment explanation
Indices: 136467--137037 Score: 591
Period size: 179 Copynumber: 3.2 Consensus size: 177
136457 TAATTGTTTC
* ** * * *
136467 TTATCGATCAAGTTGGAATAGCTATGACTATCTAACAATTATCTATTTCAAAACATTATGACATT
1 TTATCGAACAAGTTCAAATAGTTATGACTATTTAACAATTATCTATTTCAAATCATTATGACA-T
* * * * * *
136532 TTGTTTTGTCATAAAACAATTGA-TTCTGTTCATGCAAGCATATTTTGAATAAAATAATATAAAT
65 TTGTTTTTTCATAAAACAATT-ATTTCTATTCATACAAGCTTATTTGGAATAAAATAATATTAAT
* * * *
136596 TTATTAATATTTCAAAAATTAATAAGTATAATTTTAGAAAATAAAGCTAT
129 TTATTAATA-TTCAAAAATTAATAAGTAAAAATTTAAAAAATAAAACTAT
*
136646 TT-TCTGAACACA-TTTAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC
1 TTATC-GAACA-AGTTCAAATAGTTATGACTATTT-AACAATTATCTATTTCAAATCATTATGA-
* *
136709 CATTTGTTTTTTCAT-AAACTAATTATTTCTATTCAAACAAACTTATTTGGAATAAAATAAT-TC
62 CATTTGTTTTTTCATAAAAC-AATTATTTCTATTCATACAAGCTTATTTGGAATAAAATAATAT-
* * * *
136772 TAATTAATTAATATTCCAAAATTAATAAGTAAAAATTTAAAAAATAAAATTGT
125 TAATTTATTAATATTCAAAAATTAATAAGTAAAAATTTAAAAAATAAAACTAT
** * * *
136825 TTATCGAGTAAGTTCAAATAGTTATGATTATTTTAACAATTATTTATTTCAAATCATTATGATCT
1 TTATCGAACAAGTTCAAATAGTTATGACTA-TTTAACAATTATCTATTTCAAATCATTATGA-CA
* * *
136890 TTTGTTTTGTT-ATAAAACAACTGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATATTAA
64 TTTGTTTT-TTCATAAAACAATTATTTCTATTCATACAAGCTTATTTGGAATAAAATAATATTAA
* * * * *
136954 TATATTAATATTCTAAAAATTAATAAGTTGAAGATTTAAAAAAT-TAATTAGT
128 TTTATTAATATTC-AAAAATTAATAAG-TAAAAATTTAAAAAATAAAACTA-T
* * * *
137006 TTACCAAACCAGTTCAAATTGTTATGAC-ATTT
1 TTATCGAACAAGTTCAAATAGTTATGACTATTT
137038 TATTTTGTTG
Statistics
Matches: 328, Mismatches: 48, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
178 3 0.01
179 174 0.53
180 113 0.34
181 38 0.12
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (177 bp):
TTATCGAACAAGTTCAAATAGTTATGACTATTTAACAATTATCTATTTCAAATCATTATGACATT
TGTTTTTTCATAAAACAATTATTTCTATTCATACAAGCTTATTTGGAATAAAATAATATTAATTT
ATTAATATTCAAAAATTAATAAGTAAAAATTTAAAAAATAAAACTAT
Found at i:136979 original size:631 final size:598
Alignment explanation
Indices: 135827--137245 Score: 2261
Period size: 631 Copynumber: 2.3 Consensus size: 598
135817 TTTCTTATCG
* * *
135827 ATTGTTTCTTATCGATCAAATTGAAATAGCTATGACTTTCTAAACAATTATCTATTTTAAAACAT
1 ATTGTTTCTTATCGATCAAGTTGAAATAGCTATGACTATCTAAACAATTATCTATTTCAAAACAT
* * *
135892 TATGACATTTTGTGTTGTCATAAAACAATTGATTATGTTCATGCAAGAATATTTTGAATAAAATA
66 TATGACATTTTGTTTTGTCATAAAACAATTGATTCTGTTCATGCAAGCATATTTTGAATAAAATA
135957 ATATAAATTT-TTAATATTTCAAAAATTAATAAGTATAATTTTAGAAAATAAAGCTATTTTCTGA
131 ATATAAATTTATTAATATTTCAAAAATTAATAAGTATAATTTTAGAAAATAAAGCTATTTTCTGA
* *
136021 ATACATTCAAATTGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTT
196 ACACATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTT
* *
136086 TTTCATAAACTAATTATTTCTGTTCAAACAAGCTTATTTGGAATAAAATAATTCTAATTAATTAA
261 TTTCATAAACTAATTATTTCTATTCAAACAAACTTATTTGGAATAAAATAATTCTAATTAATTAA
* *
136151 TATTCCAAAATTAATAAGTAAAAGATTTAAAAAATGAATTTGTTTATCGAGTAAGTTCAAATAGT
326 TATTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAAATTGTTTATCGAGTAAGTTCAAATAGT
*
136216 TATGATTGTTTGAACAATTATTTATTTCAAATCATTATGATCTTTTGTTTTGTTATAAAACAATC
391 TATGATTATTTGAACAATTATTTATTTCAAATCATTATGATCTTTTGTTTTGTTATAAAACAATC
*
136281 GTTTCTATTCATACAAGTTTATTTGGAATAAAATAATATTGATATATTAACATTCTAAAAATTAA
456 GTTTCTATTCATACAAGTTTATTTGGAATAAAATAATATTAATATATTAACATTCTAAAAATTAA
136346 TAAGTTGAAGATTTAAAAAATTAATTAGTTTACCTAACCAGTTCAAATAGTCATGTCCATTTCAA
521 TAAGTTGAAGATTTAAAAAATTAATTAGTTTACC-AA--A---C-------CA-G----------
*
136411 CTATTATCTATTTCAAATTGTTATGACATTTTATTTTGTTGTAAAATA
562 -----------TTCAAATTGTTATGACATTTTATTTTGTTGTAAAACA
*
136459 ATTGTTTCTTATCGATCAAGTTGGAATAGCTATGACTATCT-AACAATTATCTATTTCAAAACAT
1 ATTGTTTCTTATCGATCAAGTTGAAATAGCTATGACTATCTAAACAATTATCTATTTCAAAACAT
136523 TATGACATTTTGTTTTGTCATAAAACAATTGATTCTGTTCATGCAAGCATATTTTGAATAAAATA
66 TATGACATTTTGTTTTGTCATAAAACAATTGATTCTGTTCATGCAAGCATATTTTGAATAAAATA
136588 ATATAAATTTATTAATATTTCAAAAATTAATAAGTATAATTTTAGAAAATAAAGCTATTTTCTGA
131 ATATAAATTTATTAATATTTCAAAAATTAATAAGTATAATTTTAGAAAATAAAGCTATTTTCTGA
*
136653 ACACATTTAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTT
196 ACACATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTT
136718 TTTCATAAACTAATTATTTCTATTCAAACAAACTTATTTGGAATAAAATAATTCTAATTAATTAA
261 TTTCATAAACTAATTATTTCTATTCAAACAAACTTATTTGGAATAAAATAATTCTAATTAATTAA
136783 TATTCCAAAATTAATAAGTAAAA-ATTTAAAAAATAAAATTGTTTATCGAGTAAGTTCAAATAGT
326 TATTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAAATTGTTTATCGAGTAAGTTCAAATAGT
*
136847 TATGATTATTTTAACAATTATTTATTTCAAATCATTATGATCTTTTGTTTTGTTATAAAACAA-C
391 TATGATTATTTGAACAATTATTTATTTCAAATCATTATGATCTTTTGTTTTGTTATAAAACAATC
*
136911 TGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATATTAATATATTAATATTCTAAAAATTA
456 -GTTTCTATTCATACAAGTTTATTTGGAATAAAATAATATTAATATATTAACATTCTAAAAATTA
136976 ATAAGTTGAAGATTTAAAAAATTAATTAGTTTACCAAACCAGTTCAAATTGTTATGACATTTTAT
520 ATAAGTTGAAGATTTAAAAAATTAATTAGTTTACCAAACCAGTTCAAATTGTTATGACATTTTAT
137041 TTTGTTGTAAAACA
585 TTTGTTGTAAAACA
*
137055 ATTGTTTCTTATCGATCAAGTTGAAATAGCTATGACTATCTAAACAATTATCTATTTCAAAATAT
1 ATTGTTTCTTATCGATCAAGTTGAAATAGCTATGACTATCTAAACAATTATCTATTTCAAAACAT
* * *
137120 TATGACATTTTGTTTTATCATAAAACAATTGGTTCTGTTCATGCAAGCGTATTTTGAATAAAATA
66 TATGACATTTTGTTTTGTCATAAAACAATTGATTCTGTTCATGCAAGCATATTTTGAATAAAATA
* *
137185 ATATAAATTTATTAATATTTCAAAACTTAATAAGTATAATTTTAGAAAATAAAGGTATTTT
131 ATATAAATTTATTAATATTTCAAAAATTAATAAGTATAATTTTAGAAAATAAAGCTATTTT
137246 GTTAAATTAA
Statistics
Matches: 758, Mismatches: 26, Indels: 41
0.92 0.03 0.05
Matches are distributed among these distances:
596 76 0.10
597 143 0.19
617 1 0.00
618 2 0.00
625 1 0.00
628 1 0.00
630 3 0.00
631 291 0.38
632 240 0.32
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.42
Consensus pattern (598 bp):
ATTGTTTCTTATCGATCAAGTTGAAATAGCTATGACTATCTAAACAATTATCTATTTCAAAACAT
TATGACATTTTGTTTTGTCATAAAACAATTGATTCTGTTCATGCAAGCATATTTTGAATAAAATA
ATATAAATTTATTAATATTTCAAAAATTAATAAGTATAATTTTAGAAAATAAAGCTATTTTCTGA
ACACATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTT
TTTCATAAACTAATTATTTCTATTCAAACAAACTTATTTGGAATAAAATAATTCTAATTAATTAA
TATTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAAATTGTTTATCGAGTAAGTTCAAATAGT
TATGATTATTTGAACAATTATTTATTTCAAATCATTATGATCTTTTGTTTTGTTATAAAACAATC
GTTTCTATTCATACAAGTTTATTTGGAATAAAATAATATTAATATATTAACATTCTAAAAATTAA
TAAGTTGAAGATTTAAAAAATTAATTAGTTTACCAAACCAGTTCAAATTGTTATGACATTTTATT
TTGTTGTAAAACA
Found at i:137954 original size:14 final size:16
Alignment explanation
Indices: 137923--137959 Score: 60
Period size: 14 Copynumber: 2.4 Consensus size: 16
137913 AGTAACTTTA
137923 ATAATTATTAAGATAT
1 ATAATTATTAAGATAT
137939 ATAATTA-TAA-ATAT
1 ATAATTATTAAGATAT
137953 ATAATTA
1 ATAATTA
137960 ATAGTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.52
15 3 0.14
16 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
ATAATTATTAAGATAT
Found at i:138102 original size:16 final size:15
Alignment explanation
Indices: 138064--138133 Score: 65
Period size: 15 Copynumber: 4.6 Consensus size: 15
138054 AACTTAACTA
*
138064 ATATAATCTAATATT
1 ATATAATTTAATATT
138079 ATATAA-TTATATATT
1 ATATAATTTA-ATATT
138094 ATAATAATTTAATATT
1 AT-ATAATTTAATATT
*
138110 AT-TAAATTTATTAATT
1 ATAT-AATTTAAT-ATT
138126 A-ATAATTT
1 ATATAATTT
138134 TGGATTATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
14 3 0.06
15 25 0.53
16 16 0.34
17 3 0.06
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATAATTTAATATT
Found at i:138235 original size:15 final size:15
Alignment explanation
Indices: 138217--138282 Score: 57
Period size: 15 Copynumber: 4.3 Consensus size: 15
138207 ATTATACGAT
*
138217 TATAATTTATAATTA
1 TATAAATTATAATTA
138232 TATAAATTATAATTA
1 TATAAATTATAATTA
138247 CTAATCAAA-TACT--TCTA
1 -T-AT-AAATTA-TAAT-TA
138264 TATAAATTATAATTA
1 TATAAATTATAATTA
138279 TATA
1 TATA
138283 TAAAGTACAA
Statistics
Matches: 42, Mismatches: 1, Indels: 16
0.71 0.02 0.27
Matches are distributed among these distances:
14 4 0.10
15 24 0.57
16 4 0.10
17 6 0.14
18 4 0.10
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (15 bp):
TATAAATTATAATTA
Found at i:138423 original size:17 final size:17
Alignment explanation
Indices: 138403--138437 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
138393 TATTAATCAA
*
138403 ATATATATTATAATATT
1 ATATATAATATAATATT
138420 ATATATAATATAATATT
1 ATATATAATATAATATT
138437 A
1 A
138438 GTTAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATAATATAATATT
Found at i:139081 original size:23 final size:22
Alignment explanation
Indices: 139043--139087 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
139033 TTTATTAGTT
139043 AATTATAAAATTTATAATGAATA
1 AATTATAAAATTTATAAT-AATA
139066 AATTA-AAAATTATATAATAATA
1 AATTATAAAATT-TATAATAATA
139088 TGAAGTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AATTATAAAATTTATAATAATA
Found at i:139273 original size:17 final size:17
Alignment explanation
Indices: 139251--139283 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
139241 TTATCAAATA
139251 ATTTATATAA-ATTATTT
1 ATTTAT-TAATATTATTT
139268 ATTTATTAATATTATT
1 ATTTATTAATATTATT
139284 AACTAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTATTAATATTATTT
Done.