Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168343.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_565, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22836
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Found at i:2107 original size:20 final size:20
Alignment explanation
Indices: 2084--2122 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2074 ATCAACAACG
*
2084 GATGAAAAATGAAAAAAGAT
1 GATGAAAAAAGAAAAAAGAT
*
2104 GATGAAAAAAGAAAGAAGA
1 GATGAAAAAAGAAAAAAGA
2123 AAAAAACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.23, T:0.10
Consensus pattern (20 bp):
GATGAAAAAAGAAAAAAGAT
Found at i:2125 original size:13 final size:12
Alignment explanation
Indices: 2109--2149 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
2099 AAGATGATGA
2109 AAAAAGAAAGAAG
1 AAAAA-AAAGAAG
*
2122 AAAAAAACAAAAG
1 AAAAAAA-AGAAG
2135 AAAAAAAAGAAG
1 AAAAAAAAGAAG
2147 AAA
1 AAA
2150 GAAATGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 9 0.36
13 16 0.64
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAG
Found at i:2150 original size:16 final size:15
Alignment explanation
Indices: 2108--2153 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
2098 AAAGATGATG
2108 AAAAAAGAAAGAAGAA
1 AAAAAAGAAAGAA-AA
2124 AAAAACA-AAAGAAAA
1 AAAAA-AGAAAGAAAA
2139 AAAAGAAGAAAGAAA
1 AAAA-AAGAAAGAAA
2154 TGAGAAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 7 0.26
16 19 0.70
17 1 0.04
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAGAAAA
Found at i:2161 original size:28 final size:26
Alignment explanation
Indices: 2109--2169 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 26
2099 AAGATGATGA
2109 AAAAAGAAAGAAGAAAAAAACAAAA-G
1 AAAAA-AAAGAAGAAAAAAACAAAATG
*
2135 AAAAAAAAGAAGAAAGAAATGAGAAAATG
1 AAAAAAAAGAAGAAA-AAA--ACAAAATG
2164 AAAAAA
1 AAAAAA
2170 GAGATTCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 10 0.33
26 8 0.27
28 5 0.17
29 7 0.23
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.03
Consensus pattern (26 bp):
AAAAAAAAGAAGAAAAAAACAAAATG
Found at i:3455 original size:42 final size:42
Alignment explanation
Indices: 3383--3518 Score: 222
Period size: 42 Copynumber: 3.3 Consensus size: 42
3373 ATGATTGTCA
*
3383 AGGAGCAATTTAC-TTTCCAAAGTTC-CGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAG
* *
3424 AGGAGCATTTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
3466 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
3508 AGGAGCAATTT
1 AGGAGCAATTT
3519 GGTGCCTCTA
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
41 14 0.16
42 74 0.84
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (42 bp):
AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:3521 original size:26 final size:26
Alignment explanation
Indices: 3492--3544 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3482 TCCAAAGTCG
*
3492 TGGTGCCTCTGTTTAGAGGAGCAATT
1 TGGTGCCTCTATTTAGAGGAGCAATT
3518 TGGTGCCTCTATTTAGAGGAGCAATT
1 TGGTGCCTCTATTTAGAGGAGCAATT
3544 T
1 T
3545 ACTTTCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (26 bp):
TGGTGCCTCTATTTAGAGGAGCAATT
Found at i:3575 original size:41 final size:41
Alignment explanation
Indices: 3518--3659 Score: 194
Period size: 41 Copynumber: 3.5 Consensus size: 41
3508 AGGAGCAATT
*
3518 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTTG
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCG
* *
3559 TGGTGGCTCTATTTAGAGGAGCAATTTACTTTCAAAAGTCG
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCG
* * * *
3600 TGGTGCCTTTGTGTAGAGGAGCAATTTATTTTCCAAAGTCG
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCG
* * *
3641 TTGAGCCTCTGTTTAGAGG
1 TGGTGCCTCTATTTAGAGG
3660 GGCTTTGGTC
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.36
Consensus pattern (41 bp):
TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCG
Found at i:3585 original size:67 final size:68
Alignment explanation
Indices: 3450--3585 Score: 238
Period size: 67 Copynumber: 2.0 Consensus size: 68
3440 TCCAAAGTCG
*
3450 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCA
3515 ATT
66 ATT
* *
3518 TGGTGCCTCTATTTAGAGGAGCAATTTAC-TTTCCAAAGTTGTGGTGGCTCTATTTAGAGGAGCA
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCA
3582 ATT
66 ATT
3585 T
1 T
3586 ACTTTCAAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
67 36 0.55
68 29 0.45
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (68 bp):
TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCA
ATT
Found at i:3680 original size:1 final size:1
Alignment explanation
Indices: 3670--3726 Score: 69
Period size: 1 Copynumber: 57.0 Consensus size: 1
3660 GGCTTTGGTC
* * * * *
3670 AAAAACAAAAAAAAAAAAAAAAAACAAAAAAAAACAAAAAAAAAACAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3727 TGACAATGTT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:3732 original size:26 final size:26
Alignment explanation
Indices: 3669--3726 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
3659 GGGCTTTGGT
*
3669 CAAAAACAAA-AAAAAAAAAAAAAAA
1 CAAAAAAAAACAAAAAAAAAAAAAAA
*
3694 CAAAAAAAAACAAAAAAAAAACAAAA
1 CAAAAAAAAACAAAAAAAAAAAAAAA
3720 CAAAAAA
1 CAAAAAA
3727 TGACAATGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 9 0.30
26 21 0.70
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (26 bp):
CAAAAAAAAACAAAAAAAAAAAAAAA
Found at i:3954 original size:3 final size:3
Alignment explanation
Indices: 3928--3975 Score: 64
Period size: 3 Copynumber: 16.0 Consensus size: 3
3918 CCTTCTTTTG
3928 TAT T-T TAT GTAT T-T TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
3973 TAT
1 TAT
3976 GTATATCTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
2 4 0.10
3 31 0.76
4 6 0.15
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:4050 original size:20 final size:18
Alignment explanation
Indices: 4016--4059 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
4006 TATTTATATG
4016 TAATTTATTTATATAGTTA
1 TAATTTATTTATATA-TTA
4035 TATATTTA-TTATTATATTA
1 TA-ATTTATTTA-TATATTA
4054 TAATTT
1 TAATTT
4060 TTTTTTCTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TAATTTATTTATATATTA
Found at i:4628 original size:11 final size:11
Alignment explanation
Indices: 4608--4646 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
4598 CCCAGAAACT
*
4608 GGTGATCTTCC
1 GGTGAACTTCC
*
4619 GGTGAACTTCT
1 GGTGAACTTCC
*
4630 GGCGAACTTCC
1 GGTGAACTTCC
4641 GGTGAA
1 GGTGAA
4647 AAAACCCAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.18, C:0.23, G:0.31, T:0.28
Consensus pattern (11 bp):
GGTGAACTTCC
Found at i:4687 original size:20 final size:20
Alignment explanation
Indices: 4638--4688 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
4628 CTGGCGAACT
*
4638 TCCGGTGAAAAAACCCAGAT
1 TCCGGTGAAAAAACCCAGAA
* *
4658 TTCGATGAAAAAACCCAGAA
1 TCCGGTGAAAAAACCCAGAA
*
4678 TCCGGCGAAAA
1 TCCGGTGAAAA
4689 TCTCACCGGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.43, C:0.24, G:0.20, T:0.14
Consensus pattern (20 bp):
TCCGGTGAAAAAACCCAGAA
Found at i:5054 original size:11 final size:10
Alignment explanation
Indices: 5029--5053 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
5019 TTTTTTTTAA
5029 TTTTTGAATT
1 TTTTTGAATT
5039 TTTTTGAATT
1 TTTTTGAATT
5049 TTTTT
1 TTTTT
5054 TATTTTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (10 bp):
TTTTTGAATT
Found at i:5132 original size:17 final size:16
Alignment explanation
Indices: 5098--5137 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
5088 TTAGATTAGG
*
5098 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
5114 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
5131 TTTATTT
1 TTTATTT
5138 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:5173 original size:17 final size:18
Alignment explanation
Indices: 5124--5174 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 18
5114 TTTATCTTAA
5124 TTTTATTTTTATT-TTTG
1 TTTTATTTTTATTATTTG
5141 TTTTACTTTTCT-TTATTT-
1 TTTTA-TTTT-TATTATTTG
5159 TTTTATTTTTATTATT
1 TTTTATTTTTATTATT
5175 CTATTTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 1 0.03
17 14 0.47
18 11 0.37
19 4 0.13
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTATTTTTATTATTTG
Found at i:5343 original size:117 final size:115
Alignment explanation
Indices: 5189--5539 Score: 537
Period size: 117 Copynumber: 3.0 Consensus size: 115
5179 TTTCTTTAAA
* * *
5189 TAAAAATCAAAATTTCCAAACAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAA
1 TAAAAAT--AAATTTTCAAA-AAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAA
* *
5254 AATCAAAATTTCCAAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
63 AAT-AAAATTTCAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCC
*
5309 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
* *
5374 AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
66 AAAATTTC-AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCC
*
5426 TAAAAATAAATTTTC-AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCTTGAGAAT
1 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
5489 -AAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCC
66 AAAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCC
5538 TA
1 TA
5540 CACAAAGAAA
Statistics
Matches: 217, Mismatches: 13, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
112 29 0.13
113 14 0.06
114 6 0.03
115 11 0.05
116 42 0.19
117 98 0.45
118 10 0.05
120 7 0.03
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (115 bp):
TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
AAAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCC
Found at i:5361 original size:58 final size:58
Alignment explanation
Indices: 5189--5536 Score: 515
Period size: 59 Copynumber: 6.0 Consensus size: 58
5179 TTTCTTTAAA
* *
5189 TAAAAATCAAAATTTCCAAACAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAA-AAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * * * *
5250 TGAAAATCAAAATTTCCAAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
1 TAAAAAT-AAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
*
5309 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
5367 TAAAAATAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
*
5426 TAAAAATAAATTTTC-AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCT
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
5482 TGAGAATAAA-TTTCAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
5537 CTACACAAAG
Statistics
Matches: 265, Mismatches: 19, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
55 25 0.09
56 31 0.12
57 34 0.13
58 60 0.23
59 101 0.38
60 8 0.03
61 6 0.02
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (58 bp):
TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:6886 original size:26 final size:26
Alignment explanation
Indices: 6857--6909 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6847 CCAGTCCGAT
6857 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6883 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6909 C
1 C
6910 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:8502 original size:713 final size:705
Alignment explanation
Indices: 7126--8502 Score: 1697
Period size: 714 Copynumber: 1.9 Consensus size: 705
7116 ACTACGTCGA
* *
7126 CCAGAGAGACAGGATGCGCAAGCCGTGGATAAATAGGGTGGGAGGTGGGTTTAGGAACATCTTCC
1 CCAGAGAGACAGGATGCGCAAACCCTGGATAAATAGGGTGGGAGGTGGGTTTAGGAACATCTTCC
* * * *
7191 TATTTTTGCAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGGTCCTTTAAGCCTT
66 TATGTTTCCAATGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGGTCCTTTAAGCCTT
* * * *
7256 GACATGAAGTTTCATGGCAAGATGACTCGTTTACTATTTTTCATGATTTTTGAAACTTTTTACGG
131 CACATCAAGTTTCATGGCAAGACGACTCGTTTACTATTTTTCATGATTTTTGAAACTTTTAACGG
** * * *
7321 GTTCGGGATTTTTTAAAATTTTTTTGGAAGGACTTTTGGCCCCAAACTTTGGTAGATGTGATCCT
196 CCTCAGGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTTGGTAGACGTGATCCT
* * *
7386 TCTATTTTTGTTGGCATGCACAAAAAAATCCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
261 TCTATTTTTGTTCGCATGCACAAAAAAATCCAGCCAAAAACTCAAAGTGTACAAGAGTTTGTGAC
* * *
7451 CATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
326 CATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTA-TAGCAGCAAACCTGTAAAATCT
* * *
7516 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGGTTGATAAGGGATAGGGGGCTAATATAAGGG
390 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTCAGGGTTGATAAGGGATAGGGGGCCAATATAAGGC
* * **
7581 GCAAGTACCAGCACCCATCGCACATCATGTGTTCACACCACCCCTCGACCCCCCGATCACCGAAA
455 CCAAGTACCAGCACACATCGCACATCATGTGCGCACACCACCCCTCGACCCCCCGATCACCGAAA
*
7646 CCCTAATGACGCCGATCAGGTTCTCCGACGATGGTGCCCTCGGCGAAAAGAAAATCGCGGCACCC
520 CCCTAATGACGCCGATCAGGTTCTCCGACGATGGTGCCCTCGACGAAAAGAAAATCGCGGCACCC
* ** * **
7711 AGCACATGCTTGAGCCCAGTAAGGTACTGCTGCAGCCAGCTGGTTTGATCTTAGACTGGGAATGG
585 AGCACATGCCTGAGCCCAGTAAGGTACTGCCACACCCAGCTGGTCCGATCTTAGACTGGGAATGG
*
7776 AACTTCGATATGCTAAGCCAACCGACGAAACGACAGGCGGGCGGGCACAAATGCCG
650 AACTTCCATATGCTAAGCCAACCGACGAAACGACAGGCGGGCGGGCACAAATGCCG
* ** * * *
7832 CCAGAGAGACGGGATGCGCAAACCCTGGATTGATAGGTTCGGTAGGTGGAGTTTAGGCACATCTT
1 CCAGAGAGACAGGATGCGCAAACCCTGGATAAATAGGGT-GGGAGGTGG-GTTTAGGAACATCTT
*
7897 -C-ATGTTTCCTACATGGCCATTGCCATTTTTTATGGCTTGTAACACATCACTACAATGGGTGGC
64 CCTATGTTTCC-A-AT-GCCAATGCCA-TTTTTATGGCTTGTAA-A-ATCA-TACAATGGGT--C
* *
7960 C-TTAAGGCTTCACATCACAGTTTCATGGC-AGACGACCTTCGTTTTCTATTTTTCATGA-TTTT
120 CTTTAAGCCTTCACATCA-AGTTTCATGGCAAGACGA-C-TCGTTTACTATTTTTCATGATTTTT
*
8022 GAAAACTTTTAACGGCCT-AGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTT
182 G-AAACTTTTAACGGCCTCAGGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTT
* * *
8085 -GTAGACGTGATCCTTGTAATTTTT-TTCGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTG
246 GGTAGACGTGATCCTTCT-ATTTTTGTTCGCATGCACAAAAAAATCCAGCCAAAAACTCAAAGTG
8148 TACAAGAGTTTGTGACCATTTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCT-TAGCAG
310 TACAAGAGTTTGTGACCA-TTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTATAGCAG
* *
8212 CAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGAGTTC-TCA-GGTTCGATGAGGGATA
374 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTCAGGGTT-GATAAGGGATA
*
8275 GGGGGCCAATATAA-GCCCAAGTACCAGCACACATCGTACATCATGTGCGCACACC-CCCCTCG-
438 GGGGGCCAATATAAGGCCCAAGTACCAGCACACATCGCACATCATGTGCGCACACCACCCCTCGA
* ** * * *
8337 GCCCCCGATCGTCGAAA-CC-AATGCCGTCGGTCAGGTTCTCGACGATGCTCCGGTGATGGTGCC
503 CCCCCCGATCACCGAAACCCTAATGACGCCGATCAGGTTCTC--CGA-----C---GATGGTGCC
* * * * *
8400 C-CGAC--AAAGAAAAAT-GTGGCA-CCAGCACATGCCTGAGCCGAG-CATGTGCTGCCACAACC
558 CTCGACGAAAAG-AAAATCGCGGCACCCAGCACATGCCTGAGCCCAGTAAGGTACTGCCAC-ACC
*
8459 CTTGGTCTGGTCCGATCTTAGACTGGGAAT-GAAC-TCCATATGCT
621 C--AG-CTGGTCCGATCTTAGACTGGGAATGGAACTTCCATATGCT
8503 TAGACTGGGA
Statistics
Matches: 574, Mismatches: 64, Indels: 59
0.82 0.09 0.08
Matches are distributed among these distances:
706 57 0.10
707 12 0.02
708 33 0.06
709 16 0.03
710 55 0.10
711 34 0.06
712 73 0.13
713 95 0.17
714 100 0.17
715 57 0.10
716 42 0.07
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (705 bp):
CCAGAGAGACAGGATGCGCAAACCCTGGATAAATAGGGTGGGAGGTGGGTTTAGGAACATCTTCC
TATGTTTCCAATGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGGTCCTTTAAGCCTT
CACATCAAGTTTCATGGCAAGACGACTCGTTTACTATTTTTCATGATTTTTGAAACTTTTAACGG
CCTCAGGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTTGGTAGACGTGATCCT
TCTATTTTTGTTCGCATGCACAAAAAAATCCAGCCAAAAACTCAAAGTGTACAAGAGTTTGTGAC
CATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTATAGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTTCAGGGTTGATAAGGGATAGGGGGCCAATATAAGGCC
CAAGTACCAGCACACATCGCACATCATGTGCGCACACCACCCCTCGACCCCCCGATCACCGAAAC
CCTAATGACGCCGATCAGGTTCTCCGACGATGGTGCCCTCGACGAAAAGAAAATCGCGGCACCCA
GCACATGCCTGAGCCCAGTAAGGTACTGCCACACCCAGCTGGTCCGATCTTAGACTGGGAATGGA
ACTTCCATATGCTAAGCCAACCGACGAAACGACAGGCGGGCGGGCACAAATGCCG
Found at i:9400 original size:26 final size:26
Alignment explanation
Indices: 9371--9423 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
9361 CCGGTCCAAT
9371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9397 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9423 C
1 C
9424 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10294 original size:25 final size:26
Alignment explanation
Indices: 10251--10302 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
10241 CTGGTCCGAT
10251 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10277 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10302 C
1 C
10303 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10827 original size:882 final size:884
Alignment explanation
Indices: 7750--12269 Score: 5329
Period size: 882 Copynumber: 5.1 Consensus size: 884
7740 CTGCAGCCAG
* * *
7750 CTGGTTTGATCTTAGACTGGGAATGGAACTTCGATATG-CTAAGCCAACCGACGAAACGA-CAGG
1 CTGGTCTGATCTTAGACTGGGAAT-GAACTCCG-TATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * *
7813 CGGGCGGGCACAAATGCC-GCCAGAGAGACGGGATGCGCAAACCCTGGATTGATAGGTTCGGTAG
64 CGGGCGGGCAC-TATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT-GGTAG
*
7877 GTGGAGTTTAGGCACATCTTCATGTTTCCTACATGGCCATTGCCATTTTTTATGGCTTGTAACAC
127 GTGG-GTTTAGGCACATCTT-ATG---------T-GCCAATGCCA-TTTTTATGGCTTGTAA-A-
* * * * *
7942 ATCACTACAATGGGTGGCCTTAAGGCTTCACATCACAGTTTCATGGC-AGACGACCTTCGTTTTC
177 TTCA-TACAAT-GGT-CCCTTAAGCCTTCACGTGA-AGTTTCATGGCAAGACGA-C-TCGTTTTC
* * * * *
8006 TATTTTTCATGA-TTTTGAAAACTTTTAACGG-CCTAGGATTTTTTAAAA-TTTTTCGGAAGGAG
236 TATTTTTCATGATTTTTG-AAACTTTTTATGGTTC-AAGATTTTTTAAAATTTTTTTGGAAGGAG
* * *
8068 TTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTAATTTTT-TTCGCATGCACAAAAAAATTCAG
299 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
8132 CCAAAAACTCGAAGTGTACAAGAGTTTGTGACCATTTTGAAAAAAATGTCCCCATTTCAGACACT
363 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACT
*
8197 TTAATGGCTTA---GCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGAGTTCTC-
427 TTAATGG-TTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* *
8258 AGGTTCGATGAGGGATAGGGGGCCAATATAAGC-CCAAGTACCAGCACACATCGTACATCATGTG
491 AGGTTTGATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGTACATCATGTG
* * * *
8322 CGCACACCCCCCTCGG-CCCCCGATCGTCGAA-ACCAATGCCGTCGGTCAGGTTCT-CGACGATG
556 CGCACACCCCCC-CGGCCCCCCGATCGCCGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATG
* *
8384 CTCCGGTGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCTGAGCCGAGCATGTGC
620 CTCCGGTGATGGTGCCCCGACAAAGAAAAATGTGGCACCA-CACATGCCCGAGCCCAGCATGTGC
** * *
8449 TGCCACAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAA
684 TGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
8514 TGATA-TCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCACTCTGCCGGCCAGAGGGG
749 TGA-ACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * *
8578 CGGGATGCTCAAGCC-AGGGATCGATC-GGTCTCCCTCTGCGTGCTGCCGATCTTGCAGCCGTAA
813 CGGGATGCTCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACAGCCGCAA
8641 -CTCTCGGT
877 CCT-TCGGT
* ** * *
8649 CTGATCTGATCTTACTCTGGGAATGAACTCCGTTTGCCTAAGCCAACCGACAAAACGAGCGGGCG
1 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* *
8714 GGTGGGCACTATGCCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
8779 GTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATC-T--TA----TG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
8844 GGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
187 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** * *
8909 TGAAACTTTTTATGACTCAAGATTTTTTAAAAATATTTTGGAAGGAGTTTTGGCCCCAAACTTGG
252 TGAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* *
8974 TAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGCAC
317 TAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
9039 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTACTGGCAG
382 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG-T--TACTGGCAG
*
9104 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCAAGGTTTGATGAGGGATAG
444 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
** * *
9169 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-TCACATTATGTGCGCACA-CCCCCCGACC
509 GGGGCCAATATAAGCACCAAGTACCAGCACCCATCGT-ACATCATGTGCGCACACCCCCCCG-GC
** * ** * * *
9232 CCCCCGATCATCAAACCCCAATGCCGTTGGTCAAGTTCTCCGGTGATGCTCCGGCGATGGTGCCC
572 CCCCCGATCGCCGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCC
* * * * * * *
9297 C-AGCGAAGAAAAATGCGGCACCAGCACATGCTCGACCCCAGCATTTTCTGCCGTAACCCTCGGT
637 CGA-CAAAGAAAAATGTGGCACCA-CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGT
*
9361 CCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
700 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
9426 AAGTCAACACACGAATCGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCTCAAGTCGA
765 AAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCAAGCCGA
* * * ** * *
9491 GGATCGACCGGGTCCCCTTCTGCGTGCTGCTGATCCTATTGTCGCAACCCTT-AGT
830 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACAGCCGCAA-CCTTCGGT
* * * ** *
9546 CTGGTCCGATCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AGAACGAGTAGAC
1 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-AACGAGCGGGC
* * *
9610 -GGCGGGCATTACT-CCGGCCAGAGAGA-TGGAT-CGCAAGTCAT--ATC-----GGTGGTAGGT
65 GGGCGGGCACTA-TGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
* *
9664 GGGTTTAGGCATATCTTCATGTTTCTGTGTGCCAATGCCA-TTTTATGGCTTGTAAATTGATACA
129 GGGTTTAGGCACATCTT-A--------TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
9728 ATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
185 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
9793 TTTGAAACTTTTTGTTGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTT
250 TTTGAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
*
9858 GGTAGATGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAACCTCGAAGTGT
315 GGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
9922 ACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTC-GAATACTTTAATGGTTACTGGCAG
380 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGTTACTGGCAG
* * * *
9986 CAAACCTGTAAAATCTAAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAG
444 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* *
10051 GGGGCCAATATAAGCACCAAGTACCAGCACCCATCATACATCATGTGCGTACACCCCCCCGGCCC
509 GGGGCCAATATAAGCACCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCC
** * * *
10116 CTTGATCGCCAGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCT
574 CCCGATCGCC-GAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCC
* * *
10181 GACAAAGAAAAATGT-GCACC-CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCTG
638 GACAAAGAAAAATGTGGCACCACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCG
*
10244 GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACTCCGTATGCCTAAG
703 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
10308 TTAACCCACGAAACGAGCGTGCGGGCGCTCTGCCGGCCAGACGGGCGGGATGCTCAAGCC-AGGG
768 TTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCAAGCCGA-GG
* * * *
10372 ATCGATCGGCGTCCCCCTCTACGTGCTGCCGATCTTGCAGCCGTAACCTTCGGT
832 ATCGATCGG-GTCCCCCTCTGCGTGCTGCCGATCCTACAGCCGCAACCTTCGGT
* * ** *
10426 CCGGTCCGATCTTACTCTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCG
1 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* *
10491 GGTGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
*
10556 GTTTAGGTACATC-TATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 GTTTAGGCACATCTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
10620 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCCATTTTTCACGATTTTTGAAACTTT
196 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
** * *
10685 TTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTCGGCCCCAAACTTGGTTGATGTGA
261 TTATGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
* *
10750 TCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTC-ATATTGTACAAGATTTT
326 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTT
* * *
10814 GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTGAATGGCTACTGGCAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAA
* *
10879 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
10944 AAG-AGCCAAGTA-CAGCACCCACCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGT
520 AAGCA-CCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCG-
* * ** *
11006 CCGAACCCCAATG-CGCCGGTCAGGTTCTCTGGTGATGCT-CGACGATGGTGCCCCGACGAAGAA
582 CCGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACAAAGAA
* * *
11069 AATTGTGGCACCAGTACATGCCCGAGCCGCAGCATGTGCTGCCGTAACCCCATGGTCCGGTCCGA
647 AAATGTGGCACCA-CACATGCCCGAGCC-CAGCATGTGCTGCCGTAA-CCCTTGGTCCGGTCCGA
* * * * *
11134 TCTTACACT-GGAATGAACTTCGTATGGCTTTAGACTGGGACTGAACTCCATATGCCTAAATTCA
709 TCTTAGACTGGGAATGAACTCCGTAT-GC-TTAGACTGGGAATGAACTCCGTATGCCTAAGTT-A
* * * *
11198 ACCCATGAAA-TAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGT-AAGCCCGAGGAT
771 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-TCAAG-CCGAGGAT
** * * * * *
11261 GCGGCCGGGTCCCCCTCTGCATGCTGCCGAACCTACTGCCGCAACCCTCAGT
834 -CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACAGCCGCAACCTTCGGT
* *
11313 GTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCT-AG-CAACCGACGAAACGAGCGGGCG
1 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * *
11376 GGCGGGCA-TACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGG
66 GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
* *
11440 GTTTTAGGCACATCTTATATTTCTGTGTGCCAATGCCATTTTTATTGCTTGTAAATTTATACAAT
131 G-TTTAGGCACATC-T-TA------TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
11505 GGT-CCTTAAGCCTTCACGTGAAGTTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTT
187 GGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
** ** * * * *
11569 TCAAAACTTTTTACAGTTCAAGATTTTTTTAAAATTTTTTCGGCAGGAGTTTCGGTCCC-AACTT
251 TTGAAACTTTTTATGGTTCAAGA-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
* * *
11633 GGTAAGACGTGATCC-TGTATTTTTGTTGGTATGCACAAAAAAATTCAGCT-AAAA-TCGAAGTT
315 GGT-AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
11695 TACAAGAATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCA
379 TACAAG-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCA
*
11759 GCAAACCTGT-AAATCTCAAATGCTATTTAAAGGGGGTGTGAGTTCTCAAAGGTTTGATGAGGGA
443 GCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTC-AAGGTTTGATGAGGGA
** * *
11823 TAGGGGG-CAATATAAGGGGCCTAGTA-CAG-ACCCATCGCACATCCATGTGCACGC-CA-CCCC
506 TAGGGGGCCAATATAA-GCACCAAGTACCAGCACCCATCGTACAT-CATGTG--CGCACACCCCC
* * * * * *
11883 CTGG-CCCTCGATCGCGGAA-CCTAATG-CG-CGGTCAGGTTCTCTGATGATGCT-CGATGATGG
567 CCGGCCCCCCGATCGCCGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGG
** * * **
11943 TGCCGGTGA-AGAA-AAAAATGTCGGTA-CAGCACATGACATAGCAGCCA-CATGTGCTGCCGTA
632 TGCC-CCGACA-AAGAAAAATGT-GGCACCA-CACATGCCCGAGC--CCAGCATGTGCTGCCGTA
* * *
12004 ACTCC-TCGTCCGGTTCTGATCTTATGACT-GG-ATGAACTCCGTATGTTTAGACTGAGG-ATGA
691 AC-CCTTGGTCCGG-TCCGATCTTA-GACTGGGAATGAACTCCGTATGCTTAGACTG-GGAATGA
* * * ** *
12065 ACGT-TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGTAGTGG
752 AC-TCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * *
12129 GATGCGCAAGCCGAGGATCGGTGGGGTCCCCTTCTGCGTCCTGTCGATCCTACTA-TCGCAACCC
816 GATGCTCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTAC-AGCCGCAA-CC
12193 TT-GGT
879 TTCGGT
12198 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
1 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
*
12263 TGCGGGC
66 GGCGGGC
12270 GGGCCAATAT
Statistics
Matches: 3162, Mismatches: 341, Indels: 248
0.84 0.09 0.07
Matches are distributed among these distances:
878 1 0.00
879 115 0.04
880 206 0.07
881 235 0.07
882 324 0.10
883 103 0.03
884 83 0.03
885 210 0.07
886 251 0.08
887 293 0.09
888 136 0.04
889 119 0.04
890 48 0.02
891 28 0.01
892 151 0.05
893 127 0.04
894 214 0.07
895 79 0.02
896 222 0.07
897 100 0.03
898 43 0.01
899 71 0.02
900 1 0.00
903 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
GGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
TTATGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
AGCACCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGA
ACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAAT
GTGGCACCACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCAAGCCGAGGATCGATCGGGTCCC
CCTCTGCGTGCTGCCGATCCTACAGCCGCAACCTTCGGT
Found at i:13433 original size:26 final size:26
Alignment explanation
Indices: 13404--13456 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13394 CCGGTCCGAT
13404 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
*
13430 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
13456 C
1 C
13457 CCTTAGTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:14350 original size:26 final size:26
Alignment explanation
Indices: 14321--14373 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14311 CTGATCCGAT
14321 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14347 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14373 C
1 C
14374 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15892 original size:715 final size:715
Alignment explanation
Indices: 14502--15962 Score: 2078
Period size: 715 Copynumber: 2.0 Consensus size: 715
14492 CATTTTGGTT
* * * *
14502 TGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCGATGAAATGAACGGGCGACGGGC
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGA-GGAC
* * * * *
14567 GGGCGGGCACTATACCAACCAAAGAAACGGGATGCGCAAGCCGTTGATTGATAGGGTGGTAGGTG
65 GGGCGGGCACTACACCAACCAAAGAAACCGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
14632 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTCTTATGCTGTAAATTCATACTAAT
130 GGTTTAGGCACATCTTCATATCTCTACATGCCAATGCCATTCTTATGCTGTAAATTCATACTAAT
** * * *
14697 GGTCCCTTAAGCCTTCACGTGAAGTTTCAATGGTAAGACGACTCGTTTTTTATTTTTCATGATTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCAATGCCAAGACGACTCATTTTCTATTTTTCACGATTT
*
14762 TTGAAAACTTTTTACGGTTCAGGATTTTTTAAAAATATTTGCAGAAGGGGTTTTGGCCCCAAACT
260 TTGAAAACTTTTTACGGTTCAGGATTTTTTAAAAATATTTGCAGAAGGAGTTTTGGCCCCAAACT
*
14827 TGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTG
325 TGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTG
* * *
14892 GCACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCATTTTAGACACTTTAAGGCTACTGGCAG
390 GAACAAGAATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAAGGCTACTGGCAG
*
14957 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTCGAGGTTTAATGAGGGATGGG
455 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTCGAGGTTTAATGAGGGATAGG
* *
15022 GGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATTATGTGCGCACACCCCCGGCCCCCC
520 GGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCACACACCCCCGGCCCCCC
* * * ** ** **
15087 CGATCATCGAAATCCAATGCTGTCGATCAGGTTCTCCGACGATGCTCCGGTGGTGGTGCCCCGGT
585 CAATCATCGAAACCCAATGCTGTCGATCAGGTTCTCCGACAATGCTCCGACGACGGTGCCCCGAC
*
15152 GAAGAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CTGCAACCATCGGTCCG
650 GAAGAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTC-GCAACCATC-GTCCG
15216 GTA
713 GTA
* *
15219 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCG-GGACG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGAGGACG
* ** * *
15282 GGCGGTGCACTACGCCGGCCAGAGAGACCGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGCGG-GCACTACACCAACCAAAGAAACCGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
15347 GGTTTAGGCACATCTTCATATCTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC-A
130 GGTTTAGGCACATCTTCATATCTCTACATGCCAATGCCATTCTTAT-GC-TGTAAATTCATACTA
15411 ACTGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGCCAAGACGACTCATTTTCTATTTTTTCAAC
193 A-TGGTCCCTTAAGCCTTCACGTGAAGTTTCAATGCCAAGACGACTCATTTTCTA-TTTTTC-AC
* * *
15475 GATTTTTG-AAACTTTTTGCGGTTC-GAGA-TTTTT-AAAATTTTTTC-GAAAGGAGTTTTGGCC
255 GATTTTTGAAAACTTTTTACGGTTCAG-GATTTTTTAAAAATATTTGCAG-AAGGAGTTTTGGCC
* *
15535 CCAAACTTGGTAGACATGATCCTTGTATATTTTT-TTTGCATGCACAAAAAAATTCAGCTAAAAA
318 CCAAACTTGGTAGACATGATCCTT-T-TATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAA
*
15599 -TCGAGGT-GAACAA-AATTTTGTGACC-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
381 CTCGAAGTGGAACAAGAATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAA-G
15660 GACTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
444 G-CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TCGAGGTTT
* *
15724 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-ACAAC
507 AATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCAC-A-
* * * *
15788 CGCCCCCGGCCTCCCCAATCATCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACAATGCTCCG
570 CACCCCCGGCCCCCCCAATCATC-GAAACCCAATGCTGTCGATCAGGTTCTCCGACAATGCTCCG
*
15853 ACGACGGTGCCCCGACGAAG-AAAAAT-CGGCACCAGCACATGCCCAAGCCCAGCTTGTGCTGTC
634 ACGACGGTGCCCCGACGAAGAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTC
* * *
15916 GCAACCCTCGTCTGGTC
699 GCAACCATCGTCCGGTA
*
15933 TGATCTTAGACTGGGAATGAACTCCATATG
1 TGATCTTAGACTGGGAATGAACTCCGTATG
15963 TTTAGACTAG
Statistics
Matches: 666, Mismatches: 60, Indels: 39
0.87 0.08 0.05
Matches are distributed among these distances:
712 14 0.02
713 29 0.04
714 99 0.15
715 254 0.38
716 89 0.13
717 172 0.26
718 9 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (715 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGAGGACG
GGCGGGCACTACACCAACCAAAGAAACCGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATCTCTACATGCCAATGCCATTCTTATGCTGTAAATTCATACTAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCAATGCCAAGACGACTCATTTTCTATTTTTCACGATTTT
TGAAAACTTTTTACGGTTCAGGATTTTTTAAAAATATTTGCAGAAGGAGTTTTGGCCCCAAACTT
GGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGG
AACAAGAATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAAGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTCGAGGTTTAATGAGGGATAGGG
GGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCACACACCCCCGGCCCCCCC
AATCATCGAAACCCAATGCTGTCGATCAGGTTCTCCGACAATGCTCCGACGACGGTGCCCCGACG
AAGAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCATCGTCCGGTA
Found at i:15975 original size:26 final size:26
Alignment explanation
Indices: 15938--15988 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15928 TGGTCTGATC
*
15938 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTAGGAATGAACTCCATATGT
*
15964 TTAGACTAGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCATATG
15989 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGT
Found at i:16405 original size:26 final size:26
Alignment explanation
Indices: 16369--16424 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
16359 CCGGTCCGAT
16369 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16395 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
16421 CTTA
1 CTTA
16425 AGCCAACCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17137 original size:26 final size:26
Alignment explanation
Indices: 17098--17150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17088 CCGGTCCGAT
17098 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
17124 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
17150 C
1 C
17151 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:18046 original size:26 final size:26
Alignment explanation
Indices: 17996--18048 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17986 CTGGTCCGAT
* * **
17996 CTTAGACTGGGAATGAAGTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18022 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18048 C
1 C
18049 CTAAGTCACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18416 original size:887 final size:886
Alignment explanation
Indices: 16395--22835 Score: 7693
Period size: 887 Copynumber: 7.3 Consensus size: 886
16385 ACTCCATATG
** * *
16395 CTTAGACTGGGAATGAACTCTATATGCTTAAGCCAACCGATGAAACGAGCGGGCAAGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG---GCGGGCACT
* * *
16460 ACGCGGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGT-GGTGGGTTTAGGCAC
62 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
16524 ATCTTCGTTTTTCTGCATGCCAATACCA--TTTATGGCTTGTAAACTCATACAATGGTCCCTTAA
127 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
16587 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAT-AATTTTCAAAACTTT
192 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAACTTT
*
16651 TTACGGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGA-TTTTCGGTCCCAAACTTGGTAGACGT
257 TTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTT-GGCCCCAAACTTGGTAGACGT
* * * *
16714 GATCCTTGTATTTTTTTTGGAATGCA-AAAAAATATTCAGCTAAAAACTTGAAGTATACAAGATT
320 GATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
16778 TTGTGACCATTTCAAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTG
384 TTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
16842 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAA
448 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * **
16906 TATAAGGGCCAAGTACTAGCACCCATTGCACATTATGT-CGCACACCCCCC-GCCCCCCGATCAC
513 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
* ** * * *
16969 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTTCCCCGGTGAAGAA
578 CGGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAA
* *
17034 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTTGGTCCGGTCCGATC
643 AAA--TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* *
17099 TTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
706 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
17164 CGGAACGAACGTGA-GGGCACTCAGCCAGCCAGAGGGGCAGGAAGCGTAAGCCGGGGATCGATCG
771 CGAAACG-ACGT-ACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CC
* ** * *
17228 GGTCCCCCTTTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
833 GGTCCCCCTCTATGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCT-AT
* * *
17283 CTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCAACCGATGAAAGGAGCGGGTGGGCGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC------G-G-GCGGG
* * * * * *
17348 CACTATGCCGACCAAAGAGGCGGGATGCGCAAACCGTGGATCGATAGGGTGGTCGGTGGGTTTAG
58 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
17413 GTACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCC
123 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17478 TTAAGCTTTCACGTGAAGTTTCATGGCAAGACGGCTCGTTTTGTATTTTTCACT-ATTTTTGAAA
188 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAA
*
17542 A-TTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GAAAAGAGTTTTGGCCCCAAACTTGGTAGA
252 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* **
17605 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTGTAAGA
317 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
17670 TTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
382 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
17735 GTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCAA
447 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
17800 AAATGAGGGCCAAGTACCAGCCCCCATCGCACATCATGTGCACACACCCCCCCCGGCCCACCCGT
512 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCC-CCCGA
* * * * * * *
17865 TCGTCAGAACCCCAATGTCATCGATCAGGTTCT-TCGACGATGCTCCGACGATGGTGCCCTGGCG
574 TCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCT-GGCGATGCTCCGGCGATGGTGCCCCGGCG
* * * *
17929 AAGAAAAATGGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCTGGTCCG
638 AAGAAAAATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
* ** * *
17994 ATCTTAGACTGGGAATGAAGTTTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCACC
703 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** * * *
18059 CCACGAAACGA-GTACGGGTGCTC-GACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCAAC
768 CCACGAAACGACGTACGGGCACTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC
* * *
18122 CGGTCCCCCTCTATGTGCTGTCGATCTTGCTACCACAACCCTTGGTCCGGTCCTAT
832 CGGTCCCCCTCTATGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGT-CTAT
* *
18178 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAATGAGCGGGCGGGCACTACGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGC
*
18243 CGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
66 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
18308 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCT
131 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* **
18373 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCAAAACTTTTTGT
196 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAACTTTTTAC
* * * * *
18437 GGTTCGAGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGG-CCCAATCTTGGTAGACATGATCCT
261 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
18501 TGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAAATCGAAGTGTATAAGATTTTGTGAC
326 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
18566 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATAT
391 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
18631 CAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATTTAAGGG
456 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *** *
18696 CCAA-TTCCAGCACCCATCACACATCATGTGCGCAC-CCCCCAACCCCCCCGATCGTCAGAACCC
521 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCC
* * * ** *
18759 CAATGCCACCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTTCCCCAACGAAAAAAAATACGG
586 CAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAAT--GG
* * * * * * * *
18824 CACCAACACATGCCCAAGCCCAGCATCTACTGCCGCAGCACTCGGTCTGGTCTGATCTTAGACTG
649 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* *
18889 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
714 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * ** *
18954 GCGTGCGGGCACTCATCCGGCCAAACGGGCGGGATGCTCAAGCCGAGGATCGACCGGTCCTGCTA
779 -CGTACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGTCCCCCTC
* * ** ** * *
19019 TATGTGCTGCCAATCCTATTGCTGCAACCCTCCGTCCGGTCCAAT
843 TATGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGT-CTAT
* * *
19064 CTTGGACTGGGAATGAACTCCGTATGCCTAAG-C-ACATGACGAAACGA----GCGGGCACAACG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CGACGAAACGAGCGGGCGGGCACTACG
* *
19123 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATC
65 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
19188 TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCC
130 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
19253 TTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTTTATTTTTCATGATTTTT-AAAACTTTTTG
195 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAACTTTTTA
* * * *
19317 TGGTACGAGATTTTTTAAAATTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
260 CGGTTCGGGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
19382 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCG
324 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
19447 ACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
389 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
19512 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
454 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
19577 GGCCAAGTA-TAGCACCCATCGTACATCATGTGTGCACACCCCCCGACCCGCCCAATCGTCGGAA
519 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGTCGGAA
* ** * * * * **
19641 CCCCAATGTCGTCGATCAGGTTCTCTGGCGATGCTCTGACGTTGGTGCCCCTACGAAGAAAAATG
583 CCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATG
* * **
19706 CGACACCAGCACTTGCCCGAGTCCAGCATGTGCTGTTGCAACCCTCGGTCCGGTCCGATCTTAGA
648 -G-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
*
19771 CTGGGAATG-A------A--C-T---CT--G--T--A-T--G---G-CTAAGTCAACCCATGAAA
711 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
19810 CGAGAGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATACGCAAGTCGGGGATCGATCGGGTCCC
776 CGA-CGTACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGTCCC
* * * * * * * *
19875 TCTCTGTGTGCTGTCGATCCTACTGTCACAACCTTCAGTCTGGTCCGAT
839 CCTCTATGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGT-CTAT
* * *
19924 CTTAGACTGGCAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGCGGCGGGCAGGCACTA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GCGGGCGGGCACTA
* *
19989 CGCCGGCCAGAGAGACGGGATGCGCAAGCCATGTATCGATAGGGTGGTAGGT-GGTTTAGGCACA
63 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
20053 TCTTCATATTTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAA
128 TCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
20118 GCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAATTTT
192 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAACTTT
* * * * *
20182 TTACGGTTCTGGATTTTTGAAAATTTTTTCGAATGGGGTTTTGGCCCCTAACTTGGTAGACGTGA
257 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
20247 TCCTTGTAGTTTTT-TTGGTATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTT
322 TCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
20311 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
386 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
20376 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCCAATAT
451 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* **
20440 AAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACACCGCCCCCGGCCCCCCGATCACC
516 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGGCCCCCCGATCGTC
* * * * * * *
20505 GGAACCTCAATGTCACCGGCCAGGTTCTCTGACAATGCTCCGGTGATGGTGCCCCAGCGAAGAAA
579 GGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAA
* * * * * * *
20570 AATGTAGCACCACCACATG-CTGAGCCCAGCATGTGCTACCGCAACCCTCGATCTGATCTGATCT
644 AATG--GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
* *
20634 TAGACTGGGAATGAACTCCTTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
707 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * ** *
20699 GAAACGAGCGTGCGGGCGCTCAGCCAGCCATAGGGGTGGGATGCGCAAGCCGAAGATCGGCCAGG
772 GAAACGA-CGTACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC-GG
* * ** *
20764 T-CCCCTC--TGTG-TG-CTA-CC-G-T-----AACCCTCGATTTGATCTGAT
835 TCCCCCTCTATGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCT-AT
* * *
20804 CTTAAACTGGGAATGAACTACATATGCCTAAGCCAACCGACGAAACGAGCAGACAAACGG-GTAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-G------GGCG--G
* * * ** *
20868 GCTCTACACCGGCCAGAGAGACGTGATAAGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTA
57 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
20933 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGATCC
122 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
20998 CTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTC--TTTTTCGTGA-TTTT-AAA
187 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * **
21059 ACTTTTTACGGTTC-GG-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAAATGGTAGA
252 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
21122 CGTGATCCTTGTATTTTT-TGTGGCATGCACAAAAAAA-T-A--T------T----GT-TACAAG
317 CGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
21171 ATTTTGTGACCATTT--AAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTAGCAGCAAACC
381 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
21234 TCT-AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
446 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
21297 AATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGAACA-CCCCCGACCCCCCAATC
511 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
* * * * * *
21361 G-CTGGAA-CCCAATGCCGCTGGTTAGGTTCTCTGGCAATGCTCCGGCGATGGTG-CCCTG-G-T
576 GTC-GGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGCGAA
* ** * * *
21421 GAAAAAT-G--CCAGCACATGCTCGAGCTTAGCATGTGCTGCCGTAACCCTCGATCCGGTCCAAT
640 GAAAAATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* *
21483 CTTAGTCTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
705 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
21548 ATGAAACGAACGT-CGGGCACTCAGTCGG-CAGAGGGGTGGGATGCGCAAGCC-AGGATCGGCCG
770 ACGAAACG-ACGTACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
* ** * * * *
21610 GTCCCTCTCTACAT-CTGTCGATCCTACTGTCGC-ACCCTCAGTCCGGTCTAGT
834 GTCCCCCTCTATGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTA-T
* *
21662 CTTAGAACT-GGAATGAACTCCGTATGCCTAAGCGAATCGAC-AAACGAATGGGCGGGCGGGCTA
1 CTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GCGGGCGGGC-A
* * * * *
21725 CTACGTCGGCTAGAGAGA-TGGATGCGCAACCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
60 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
21789 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA-GGCTTGTAAATTCATACAAT-GTCCCTT
125 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
21852 AAG-CTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTT-T-TTTTTCATGA-TTTTG-AAACT
190 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAACT
* *
21912 TTTT--GGTTCGGGATTTTTT-AAATTTTTTCGGAAGGATTTTTGGCCCCAAA-TTGGTAGACGT
255 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
21973 GGTCCTTGTATTTTTTTTGGCATCCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
320 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
22037 TGTGACCATTTGAAAAAAGTGTCTCCA-TTCAGACACATTAATGGCTACTGGCAGCAAACCTGTA
385 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
22101 AAATCTCAAATGCTCTTTAA-GGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGTGGCCAATA
450 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
22165 TAAGGGCCAAGTACCAGCACCCAT--CACATCATGTGCGCATACCCCCCGGCCCTCCGATCG-CT
515 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC-
* ** * *
22227 GGAACCTCAATGCCGTCGGTCAGGTTCTCTGGCGATG-TCCGGTGATGGTGCCCCGACGAAGAAA
579 GGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAA
* * *
22291 AATGCGGCACCAGCACATGCCC-ATGCCCAGCATGTGCTACCGC-ACCCT-GATCCGATCCGATC
644 AAT--GGCACCAGCACATGCCCGA-GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
*
22353 TTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
706 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
22418 TGAAACAAGCATGCGGGCACTTAGCCGGCCAGA-GGGCAGGATGCGCAAG-CAGGGATCGACTGG
771 CGAAACGA-CGTACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC-CG
* * *
22481 GT-CCCC-C--T-T--TGT-G----TGCTACCACAACCCTCGGTCCGATCGAT
834 GTCCCCCTCTATGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTAT
*
22522 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA------------GCGGG
* *
22587 CGGGCACTAC-ACGGCCAGAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
54 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
22651 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCGTTGTAAATTCATACAATG
119 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACAATG
* *
22716 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
183 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
** * * *
22781 G-AAACTTTTTGTGGTTCGGGATTTTTTCAAATTTTTTCGGAAGGACTTTTGGCCC
248 GAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
22836 A
Statistics
Matches: 4823, Mismatches: 544, Indels: 382
0.84 0.09 0.07
Matches are distributed among these distances:
847 9 0.00
848 53 0.01
849 55 0.01
850 86 0.02
851 116 0.02
852 23 0.00
853 77 0.02
854 18 0.00
855 8 0.00
856 1 0.00
857 11 0.00
858 84 0.02
859 88 0.02
860 114 0.02
861 60 0.01
862 116 0.02
863 115 0.02
864 126 0.03
865 26 0.01
866 40 0.01
867 306 0.06
868 348 0.07
869 110 0.02
870 62 0.01
871 44 0.01
872 36 0.01
873 1 0.00
874 10 0.00
875 15 0.00
876 2 0.00
877 18 0.00
878 29 0.01
879 8 0.00
880 124 0.03
881 212 0.04
882 108 0.02
883 253 0.05
884 131 0.03
885 273 0.06
886 170 0.04
887 412 0.09
888 60 0.01
889 4 0.00
890 4 0.00
892 58 0.01
893 114 0.02
894 181 0.04
895 254 0.05
896 57 0.01
897 1 0.00
898 126 0.03
899 4 0.00
900 62 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGC
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAACTTTTTAC
GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCC
CAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACG
TACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGTCCCCCTCTAT
GTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTAT
Found at i:18916 original size:26 final size:26
Alignment explanation
Indices: 18880--18932 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18870 CTGGTCTGAT
18880 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18906 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18932 C
1 C
18933 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20668 original size:26 final size:26
Alignment explanation
Indices: 20632--20684 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20622 CTGATCTGAT
*
20632 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20658 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20684 C
1 C
20685 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21512 original size:26 final size:26
Alignment explanation
Indices: 21483--21535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21473 CCGGTCCAAT
* *
21483 CTTAGTCTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21509 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21535 C
1 C
21536 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22381 original size:26 final size:26
Alignment explanation
Indices: 22352--22404 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22342 CCGATCCGAT
*
22352 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22378 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22404 C
1 C
22405 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.