Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168344.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_566, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22809
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Found at i:1651 original size:42 final size:44
Alignment explanation
Indices: 1567--1651 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 44
1557 GTTCATTGTT
* * ***
1567 TATCAAAAACAAACTCCAAAACTATATTTCTGATTGAACATATG
1 TATCAAAAACAAACTCCAAAACTAAATTTCTCACCAAACATATG
*
1611 TATCAAAACCAAACTCC-AAA-TAAATTTCTCACCAAACATAT
1 TATCAAAAACAAACTCCAAAACTAAATTTCTCACCAAACATAT
1652 ATGTTCTCAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
42 16 0.46
43 3 0.09
44 16 0.46
ACGTcount: A:0.47, C:0.22, G:0.04, T:0.27
Consensus pattern (44 bp):
TATCAAAAACAAACTCCAAAACTAAATTTCTCACCAAACATATG
Found at i:1931 original size:20 final size:20
Alignment explanation
Indices: 1906--1946 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
1896 GAAGTGAAAG
*
1906 TAGATTTGACATTTCATATA
1 TAGATTCGACATTTCATATA
1926 TAGATTCGACATTTCATATA
1 TAGATTCGACATTTCATATA
1946 T
1 T
1947 TTATATTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (20 bp):
TAGATTCGACATTTCATATA
Found at i:5229 original size:18 final size:18
Alignment explanation
Indices: 5203--5242 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
5193 TTAATTAATT
*
5203 AAAACAAAACAAAAACAA
1 AAAAAAAAACAAAAACAA
* *
5221 AAAAAAAAAGAGAAACAA
1 AAAAAAAAACAAAAACAA
5239 AAAA
1 AAAA
5243 TGGCAGAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.00
Consensus pattern (18 bp):
AAAAAAAAACAAAAACAA
Found at i:6607 original size:15 final size:15
Alignment explanation
Indices: 6587--6671 Score: 57
Period size: 15 Copynumber: 5.7 Consensus size: 15
6577 ACTAATTCTT
6587 AAATCTAAACCCCTA
1 AAATCTAAACCCCTA
* *
6602 AAATCTAAAACTCTA
1 AAATCTAAACCCCTA
* * *
6617 AAATCTTAA-CCTTT
1 AAATCTAAACCCCTA
* *
6631 AAATCCAAACCGC-A
1 AAATCTAAACCCCTA
* *
6645 AAATCCAAAACCCTTA
1 AAAT-CTAAACCCCTA
*
6661 AAATCCAAACC
1 AAATCTAAACC
6672 TTTAAATCAA
Statistics
Matches: 52, Mismatches: 15, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
14 13 0.25
15 34 0.65
16 5 0.10
ACGTcount: A:0.48, C:0.29, G:0.01, T:0.21
Consensus pattern (15 bp):
AAATCTAAACCCCTA
Found at i:6641 original size:44 final size:44
Alignment explanation
Indices: 6585--6690 Score: 133
Period size: 44 Copynumber: 2.4 Consensus size: 44
6575 ATACTAATTC
* * * **
6585 TTAAATCTAAACCCCTAAAATCTAAAACTC-TAAAATCTTAACCT
1 TTAAATCAAAACCCC-AAAATCCAAAACCCTTAAAATCCAAACCT
* *
6629 TTAAATCCAAACCGCAAAATCCAAAACCCTTAAAATCCAAACCT
1 TTAAATCAAAACCCCAAAATCCAAAACCCTTAAAATCCAAACCT
6673 TTAAATCAAAACCCCAAA
1 TTAAATCAAAACCCCAAA
6691 CCTCAAATTT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 12 0.23
44 41 0.77
ACGTcount: A:0.48, C:0.28, G:0.01, T:0.23
Consensus pattern (44 bp):
TTAAATCAAAACCCCAAAATCCAAAACCCTTAAAATCCAAACCT
Found at i:6676 original size:15 final size:15
Alignment explanation
Indices: 6600--6677 Score: 61
Period size: 15 Copynumber: 5.3 Consensus size: 15
6590 TCTAAACCCC
* * *
6600 TAAAATCTAAAACTC
1 TAAAATCCAAACCTT
**
6615 TAAAATCTTAACCTT
1 TAAAATCCAAACCTT
*
6630 T-AAATCCAAACC-G
1 TAAAATCCAAACCTT
* *
6643 CAAAATCCAAAACCCT
1 TAAAATCC-AAACCTT
6659 TAAAATCCAAACCTT
1 TAAAATCCAAACCTT
6674 TAAA
1 TAAA
6678 TCAAAACCCC
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 15 0.30
15 28 0.56
16 7 0.14
ACGTcount: A:0.49, C:0.26, G:0.01, T:0.24
Consensus pattern (15 bp):
TAAAATCCAAACCTT
Found at i:6679 original size:30 final size:29
Alignment explanation
Indices: 6626--6686 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 29
6616 AAAATCTTAA
*
6626 CCTTTAAATCCAAACCGCAAAATCCAAAAC
1 CCTTAAAATCCAAACCGCAAAAT-CAAAAC
***
6656 CCTTAAAATCCAAACCTTTAAATCAAAAC
1 CCTTAAAATCCAAACCGCAAAATCAAAAC
6685 CC
1 CC
6687 CAAACCTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.46, C:0.33, G:0.02, T:0.20
Consensus pattern (29 bp):
CCTTAAAATCCAAACCGCAAAATCAAAAC
Found at i:6789 original size:15 final size:14
Alignment explanation
Indices: 6768--6808 Score: 64
Period size: 15 Copynumber: 2.9 Consensus size: 14
6758 TTAAAACTTT
*
6768 CAAACCCTCAAATC
1 CAAACCCTAAAATC
6782 CAAAACCCTAAAATC
1 C-AAACCCTAAAATC
6797 CAAACCCTAAAA
1 CAAACCCTAAAA
6809 ACGAAACTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.51, C:0.37, G:0.00, T:0.12
Consensus pattern (14 bp):
CAAACCCTAAAATC
Found at i:6809 original size:15 final size:14
Alignment explanation
Indices: 6587--6808 Score: 83
Period size: 14 Copynumber: 15.2 Consensus size: 14
6577 ACTAATTCTT
*
6587 AAATCTAAACCCCTA
1 AAATCCAAA-CCCTA
* *
6602 AAATCTAAAACTCTA
1 AAATC-CAAACCCTA
** * *
6617 AAATCTTAACCTTT
1 AAATCCAAACCCTA
6631 AAATCCAAACCGC-A
1 AAATCCAAACC-CTA
6645 AAATCCAAAACCCTTA
1 AAATCC-AAACCC-TA
* *
6661 AAATCCAAACCTTT
1 AAATCCAAACCCTA
* *
6675 AAATCAAAACCC-C
1 AAATCCAAACCCTA
* ***
6688 AAACCTCAAATTTTA
1 AAATC-CAAACCCTA
*
6703 AAAACCAAAACCCTCA
1 AAATCC-AAACCCT-A
* *
6719 AAA-CGAAACTCTA
1 AAATCCAAACCCTA
*
6732 AATTTCCCAAACCCTA
1 AA-AT-CCAAACCCTA
* * *
6748 ACAT-TAAACCTTA
1 AAATCCAAACCCTA
* *
6761 AAACTTTCAAACCCTC
1 AAA--TCCAAACCCTA
6777 AAATCCAAAACCCTA
1 AAATCC-AAACCCTA
6792 AAATCCAAACCCTA
1 AAATCCAAACCCTA
6806 AAA
1 AAA
6809 ACGAAACTCT
Statistics
Matches: 150, Mismatches: 41, Indels: 33
0.67 0.18 0.15
Matches are distributed among these distances:
13 16 0.11
14 54 0.36
15 48 0.32
16 32 0.21
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.21
Consensus pattern (14 bp):
AAATCCAAACCCTA
Found at i:6815 original size:14 final size:14
Alignment explanation
Indices: 6768--6821 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
6758 TTAAAACTTT
* *
6768 CAAACCCTCAAATC
1 CAAACCCTAAAAAC
*
6782 CAAAACCCTAAAATC
1 C-AAACCCTAAAAAC
6797 CAAACCCTAAAAAC
1 CAAACCCTAAAAAC
* *
6811 GAAACTCTAAA
1 CAAACCCTAAA
6822 TTTCTTAAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 22 0.63
15 13 0.37
ACGTcount: A:0.52, C:0.33, G:0.02, T:0.13
Consensus pattern (14 bp):
CAAACCCTAAAAAC
Found at i:6894 original size:88 final size:87
Alignment explanation
Indices: 6701--6879 Score: 218
Period size: 88 Copynumber: 2.0 Consensus size: 87
6691 CCTCAAATTT
* * * *
6701 TAAAAACCAAAACCCTCAAAACGAAACTCTAAATTTCCCAAACCCTAACATTAAACCTTAAAACT
1 TAAAATCC-AAACCCTAAAAACGAAACTCTAAATTTCCCAAACCCTAAAATTAAACCTTAAAACC
* *
6766 TTCAAACCCTCAAATCCAAAACCC
65 TCCAAACCCTAAAAT-CAAAACCC
**
6790 TAAAATCCAAACCCTAAAAACGAAACTCTAAATTTCTTAAACCCTAAAATTAAACCTT-AAACCT
1 TAAAATCCAAACCCTAAAAACGAAACTCTAAATTTCCCAAACCCTAAAATTAAACCTTAAAACCT
* * *
6854 CCTAACCTTAAAAAT-GAAACCC
66 CCAAACCCT-AAAATCAAAACCC
6876 TAAA
1 TAAA
6880 CCTTCTAAAC
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
86 10 0.13
87 11 0.14
88 50 0.64
89 7 0.09
ACGTcount: A:0.48, C:0.29, G:0.02, T:0.21
Consensus pattern (87 bp):
TAAAATCCAAACCCTAAAAACGAAACTCTAAATTTCCCAAACCCTAAAATTAAACCTTAAAACCT
CCAAACCCTAAAATCAAAACCC
Found at i:6942 original size:29 final size:29
Alignment explanation
Indices: 6768--7081 Score: 119
Period size: 29 Copynumber: 10.9 Consensus size: 29
6758 TTAAAACTTT
* * *
6768 CAAACCCTCAAATCCAAAACCCTAAA-ATC
1 CAAACCCTAAAAT-CAAAACCCCAAACCTC
* * * * **
6797 CAAACCCTAAAAACGAAACTCTAAATTTC
1 CAAACCCTAAAATCAAAACCCCAAACCTC
* * **
6826 TTAAACCCTAAAAT-TAAACCTTAAACCTC
1 -CAAACCCTAAAATCAAAACCCCAAACCTC
* * * *
6855 CTAACCTTAAAAAT-GAAACCCTAAACCTTC
1 CAAACCCT-AAAATCAAAACCCCAAACC-TC
* * *
6885 TAAACCCT--AATTAAAACCTTC--ACCTTC
1 CAAACCCTAAAATCAAAACC-CCAAACC-TC
*
6912 CAAACCCTACAATCAAAACCCCAAACCTC
1 CAAACCCTAAAATCAAAACCCCAAACCTC
* * ** *
6941 CAAGCTCTAAAAT-AAAAGATCCAAACCTT
1 CAAACCCTAAAATCAAAA-CCCCAAACCTC
* **
6970 CAAACCCTAAAAT-TAAACCGTAAATCCTC
1 CAAACCCTAAAATCAAAACCCCAAA-CCTC
* * * * ** *
6999 TAAATCCTAAAACCATAACTTCAAATCT-
1 CAAACCCTAAAATCAAAACCCCAAACCTC
*
7027 CAAACCCTAAAATCAAAACCCCAAATCT-
1 CAAACCCTAAAATCAAAACCCCAAACCTC
* * *
7055 CAAACCTTAAAATCAAAAACCTAAACC
1 CAAACCCTAAAATCAAAACCCCAAACC
7082 CTAAAATTTG
Statistics
Matches: 213, Mismatches: 59, Indels: 27
0.71 0.20 0.09
Matches are distributed among these distances:
27 16 0.08
28 73 0.34
29 97 0.46
30 27 0.13
ACGTcount: A:0.46, C:0.32, G:0.02, T:0.20
Consensus pattern (29 bp):
CAAACCCTAAAATCAAAACCCCAAACCTC
Found at i:7038 original size:28 final size:28
Alignment explanation
Indices: 6969--7072 Score: 84
Period size: 28 Copynumber: 3.7 Consensus size: 28
6959 ATCCAAACCT
** **
6969 TCAAACCCTAAAA-TTAAACCGTAAATCC
1 TCAAACCCTAAAACCAAAACCCCAAAT-C
* * **
6997 TCTAAATCCTAAAACCATAACTTCAAATC
1 TC-AAACCCTAAAACCAAAACCCCAAATC
*
7026 TCAAACCCTAAAATCAAAACCCCAAATC
1 TCAAACCCTAAAACCAAAACCCCAAATC
* *
7054 TCAAACCTTAAAATCAAAA
1 TCAAACCCTAAAACCAAAA
7073 ACCTAAACCC
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 41 0.67
29 13 0.21
30 7 0.11
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.21
Consensus pattern (28 bp):
TCAAACCCTAAAACCAAAACCCCAAATC
Found at i:7047 original size:14 final size:14
Alignment explanation
Indices: 7028--7079 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
7018 TTCAAATCTC
7028 AAACCCTAAAATCA
1 AAACCCTAAAATCA
* *
7042 AAACCC-CAAATCTC
1 AAACCCTAAAATC-A
*
7056 AAACCTTAAAATCA
1 AAACCCTAAAATCA
*
7070 AAAACCTAAA
1 AAACCCTAAA
7080 CCCTAAAATT
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
13 5 0.17
14 19 0.66
15 5 0.17
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (14 bp):
AAACCCTAAAATCA
Found at i:13595 original size:19 final size:19
Alignment explanation
Indices: 13573--13609 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
13563 TGATGGGGCA
13573 TAAAAAAAACAA-AAAAAAG
1 TAAAAAAAA-AAGAAAAAAG
13592 TAAAAAAAAAAGAAAAAA
1 TAAAAAAAAAAGAAAAAA
13610 ACAAACAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.86, C:0.03, G:0.05, T:0.05
Consensus pattern (19 bp):
TAAAAAAAAAAGAAAAAAG
Found at i:15444 original size:41 final size:41
Alignment explanation
Indices: 15341--15445 Score: 149
Period size: 41 Copynumber: 2.6 Consensus size: 41
15331 TTAAAGTTTT
* * *
15341 AAAGCCTTTGTTTAAGAA-AAACCATTTTCAATCAAGATTTC
1 AAAGCCTCTGTTTAA-AAGGAACCAATTTCAATCAAGATTTC
15382 AAAGCCTCTGTTTAAAAGGAACCAATTTCAATCAAGATTTC
1 AAAGCCTCTGTTTAAAAGGAACCAATTTCAATCAAGATTTC
* *
15423 AAAGCCTCTGTTTAGAGGGAACC
1 AAAGCCTCTGTTTAAAAGGAACC
15446 TTCCTCAGAA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 2 0.03
41 56 0.97
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (41 bp):
AAAGCCTCTGTTTAAAAGGAACCAATTTCAATCAAGATTTC
Found at i:15756 original size:22 final size:22
Alignment explanation
Indices: 15728--15796 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
15718 GTCGATTCTG
15728 TAAGACCTCCGGGCATAATCTC
1 TAAGACCTCCGGGCATAATCTC
* ** *
15750 TAAGACCACCAAGCATAAT-TT
1 TAAGACCTCCGGGCATAATCTC
* *
15771 TCAAGACCTCTGGACATAATCTC
1 T-AAGACCTCCGGGCATAATCTC
15794 TAA
1 TAA
15797 AGCCTCTGTG
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.25
Consensus pattern (22 bp):
TAAGACCTCCGGGCATAATCTC
Found at i:16246 original size:22 final size:22
Alignment explanation
Indices: 16204--16247 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
16194 GTCGATTCTG
* * *
16204 TAAGACCTTCAGGCTTGATTTT
1 TAAGACCTCCAGGCATAATTTT
16226 TAAGACCTCCAGGCATAATTTT
1 TAAGACCTCCAGGCATAATTTT
16248 GATTCACGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.36
Consensus pattern (22 bp):
TAAGACCTCCAGGCATAATTTT
Found at i:16338 original size:22 final size:21
Alignment explanation
Indices: 16313--16355 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
16303 GTCGATTCTG
*
16313 TAAGACCTCTGGGTATGATTTT
1 TAAGACCTCTGGGCAT-ATTTT
16335 TAAGACCTCTGGGCATATTTT
1 TAAGACCTCTGGGCATATTTT
16356 AGATTCACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.40
Consensus pattern (21 bp):
TAAGACCTCTGGGCATATTTT
Found at i:16372 original size:219 final size:219
Alignment explanation
Indices: 15909--16673 Score: 767
Period size: 219 Copynumber: 3.5 Consensus size: 219
15899 TAAGACTTTC
* * * **
15909 GGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTA-TCTTTCACTTGTGATGTTATC
1 GGGCATAATTTCGATTCACGGTGTTATCCCGATCGATTCTTTATTTTTTGACTTAAGATGTTATC
* * * * * *
15973 CCAGTTGATTCTGTAAGACCTCCGGGCATGATTTTTAAGACTTCCAAGCATAATTTCGATTCGC-
66 CCAGTCGATTCTGTAAAACCTTCGGGCATGATTTTTAAGACCTCCAGGCATAATTTTGATTCGCG
* * * * * *
16037 ATGTTATCCGATCGATTTTTTATTTTTTGACTTACGGTGTTATCCCAACCGATTCTGTAAGACCA
131 GTGTTATCTGATCGATTTCTTATCTTTTAACTTACGGTGTTATCCCAATCGATTCTGTAAGACC-
** *
16102 TC-GGGCATGATTCCTAAAACCT-T
195 TCTGGGCATGATTTTTAAGACCTCT
* ** * *
16125 CAGGCATAATTTTTATTCGCGGTGTTATCCCGATCGATTCTTTATTTTTTGACTTACAG-TGTTG
1 -GGGCATAATTTCGATTCACGGTGTTATCCCGATCGATTCTTTATTTTTTGACTTA-AGATGTTA
* * * * *
16189 TCCTAGTCGATTCTGTAAGACCTTCAGGCTTGATTTTTAAGACCTCCAGGCATAATTTTGATTCA
64 TCCCAGTCGATTCTGTAAAACCTTCGGGCATGATTTTTAAGACCTCCAGGCATAATTTTGATTCG
* * * * * *
16254 CGGTATTATCTTAATTGA-TTCTTATCTTTCAACTTAAGGTGTTATCCCAGTCGATTCTGTAAGA
129 CGGTGTTATC-TGATCGATTTCTTATCTTTTAACTTACGGTGTTATCCCAATCGATTCTGTAAGA
*
16318 CCTCTGGGTATGATTTTTAAGACCTCT
193 CCTCTGGGCATGATTTTTAAGACCTCT
* * * * * *
16345 GGGCATATTTTAGATTCACGGTGTTATCCCGATCGATTCTTTATTTTTTAACTTATGTTGTTGTC
1 GGGCATAATTTCGATTCACGGTGTTATCCCGATCGATTCTTTATTTTTTGACTTAAGATGTTATC
* * * * *
16410 CCAATCAATTCTGTAAAACC-TCTGGGCATGATTTTTAAAACCTCTAGGCATAATTTTGATTCGT
66 CCAGTCGATTCTGTAAAACCTTC-GGGCATGATTTTTAAGACCTCCAGGCATAATTTTGATTCGC
* * *
16474 GGTGTTATCCTGCTCGATTTCTTATCTTTTAACTTACGGTATTATCCCAATCAATTCTGTAAGAC
130 GGTGTTAT-CTGATCGATTTCTTATCTTTTAACTTACGGTGTTATCCCAATCGATTCTGTAAGAC
* *
16539 CT-TCGAGCATGATTTTTAAGACCTCC
194 CTCT-GGGCATGATTTTTAAGACCTCT
* * ** * * * * * *
16565 GAGCATAATTTCGATTTATAGTGTCATCCCAATCGATTCCTTATCTTTCGACCCGT-A-ATGTTA
1 GGGCATAATTTCGATTCACGGTGTTATCCCGATCGATTCTTTATTTTTTGA--CTTAAGATGTTA
* * * *
16628 TCCTAGTCGATTCTGTAAAACCTCCGAGCATGATTCTGTAAGACCT
64 TCCCAGTCGATTCTGTAAAACCTTCGGGCATGATT-TTTAAGACCT
16674 TCGAGCATGA
Statistics
Matches: 448, Mismatches: 85, Indels: 26
0.80 0.15 0.05
Matches are distributed among these distances:
217 40 0.09
218 74 0.17
219 183 0.41
220 140 0.31
221 9 0.02
222 2 0.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (219 bp):
GGGCATAATTTCGATTCACGGTGTTATCCCGATCGATTCTTTATTTTTTGACTTAAGATGTTATC
CCAGTCGATTCTGTAAAACCTTCGGGCATGATTTTTAAGACCTCCAGGCATAATTTTGATTCGCG
GTGTTATCTGATCGATTTCTTATCTTTTAACTTACGGTGTTATCCCAATCGATTCTGTAAGACCT
CTGGGCATGATTTTTAAGACCTCT
Found at i:16451 original size:22 final size:22
Alignment explanation
Indices: 16423--16466 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
16413 ATCAATTCTG
* *
16423 TAAAACCTCTGGGCATGATTTT
1 TAAAACCTCTAGGCATAATTTT
16445 TAAAACCTCTAGGCATAATTTT
1 TAAAACCTCTAGGCATAATTTT
16467 GATTCGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (22 bp):
TAAAACCTCTAGGCATAATTTT
Found at i:16533 original size:329 final size:326
Alignment explanation
Indices: 15910--16673 Score: 867
Period size: 329 Copynumber: 2.3 Consensus size: 326
15900 AAGACTTTCG
* * * **
15910 GGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTCACTTGTGATGTTATCCC
1 GGCATAATTTCGATTCACGGTATTATCCCAATCGATTCTTTATCTTTCACTTAAGATGTTATCCC
* * * *
15975 AGTTGATTCTGTAAGACCTCCGGGCATGATTTTTAAGACTTCCAAGCATAATTTCGATTCGCATG
66 AGTCGATTCTGTAAGACCTCCGGGCATGATTTTTAAGACCTCCAAGCATAATTTAGATTCACATG
* * * *
16040 TTATCCGATCGATTTTTTATTTTTTGACTTACGGTGTTATCCCAACCGATTCTGTAAGACCATCG
131 TTATCCGATCGATTCTTTATTTTTTAACTTACGGTGTTATCCCAACCAATTCTGTAAAACCATCG
*
16105 GGCATGATTCCTAAAACCTTCAGGCATAATTTTTATTCGCGGTGTTATCCCGATCGATTCTTTAT
196 GGCATGATTCCTAAAACCTTCAGGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTAT
* * * * * * * *
16170 TTTTTGACTTACAGTGTTGTCCTAGTCGATTCTGTAAGACCTTC-AGGCTTGATTTTTAAGACCT
261 CTTTTAACTTACAGTATTATCCCAATCAATTCTGTAAGACCTTCGA-GCATGATTTTTAAGACCT
16234 CC
325 CC
* ** * *
16236 AGGCATAATTTTGATTCACGGTATTATCTTAATTGATTC-TTATCTTTCAACTTAAGGTGTTATC
1 -GGCATAATTTCGATTCACGGTATTATCCCAATCGATTCTTTATCTTTC-ACTTAAGATGTTATC
* * *** *
16300 CCAGTCGATTCTGTAAGACCTCTGGGTATGATTTTTAAGACCTCTGGGCATATTTTAGATTCACG
64 CCAGTCGATTCTGTAAGACCTCCGGGCATGATTTTTAAGACCTCCAAGCATAATTTAGATTCAC-
* * * * *
16365 GTGTTATCCCGATCGATTCTTTATTTTTTAACTTATGTTGTTGTCCCAATCAATTCTGTAAAACC
128 ATGTTAT-CCGATCGATTCTTTATTTTTTAACTTACGGTGTTATCCCAACCAATTCTGTAAAACC
** * * *
16430 -TCTGGGCATGATTTTTAAAACC-TCTAGGCATAATTTTGATTCGTGGTGTTATCCTGCTCGATT
192 ATC-GGGCATGATTCCTAAAACCTTC-AGGCATAATTTTGATTCGCGGTGTTATCCCGATCGATT
*
16493 -TCTTATCTTTTAACTTACGGTATTATCCCAATCAATTCTGTAAGACCTTCGAGCATGATTTTTA
255 CT-TTATCTTTTAACTTACAGTATTATCCCAATCAATTCTGTAAGACCTTCGAGCATGATTTTTA
16557 AGACCTCC
319 AGACCTCC
* ** * * * *
16565 GAGCATAATTTCGATTTATAGTGTCATCCCAATCGATTCCTTATCTTTCGACCCGT-A-ATGTTA
1 G-GCATAATTTCGATTCACGGTATTATCCCAATCGATTCTTTATCTTTC-A--CTTAAGATGTTA
* * * *
16628 TCCTAGTCGATTCTGTAAAACCTCCGAGCATGATTCTGTAAGACCT
62 TCCCAGTCGATTCTGTAAGACCTCCGGGCATGATT-TTTAAGACCT
16674 TCGAGCATGA
Statistics
Matches: 363, Mismatches: 62, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
326 9 0.02
327 97 0.27
328 12 0.03
329 187 0.52
330 46 0.13
331 10 0.03
332 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (326 bp):
GGCATAATTTCGATTCACGGTATTATCCCAATCGATTCTTTATCTTTCACTTAAGATGTTATCCC
AGTCGATTCTGTAAGACCTCCGGGCATGATTTTTAAGACCTCCAAGCATAATTTAGATTCACATG
TTATCCGATCGATTCTTTATTTTTTAACTTACGGTGTTATCCCAACCAATTCTGTAAAACCATCG
GGCATGATTCCTAAAACCTTCAGGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTAT
CTTTTAACTTACAGTATTATCCCAATCAATTCTGTAAGACCTTCGAGCATGATTTTTAAGACCTC
C
Found at i:16561 original size:22 final size:22
Alignment explanation
Indices: 16533--16575 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
16523 ATCAATTCTG
* *
16533 TAAGACCTTCGAGCATGATTTT
1 TAAGACCTCCGAGCATAATTTT
16555 TAAGACCTCCGAGCATAATTT
1 TAAGACCTCCGAGCATAATTT
16576 CGATTTATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAATTTT
Found at i:16601 original size:110 final size:109
Alignment explanation
Indices: 15910--16612 Score: 682
Period size: 110 Copynumber: 6.4 Consensus size: 109
15900 AAGACTTTCG
* * * ** *
15910 GGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATC-TTTCACTTGTGATGTTATCC
1 GGCATAATTTTGATTCACGGTGTTATCCCGATCGATTC-TTATCTTTTAACTTACGGTGTTATCC
* * * *
15974 CAGTTGATTCTGTAAGACCTCCGGGCATGATTTTTAAGACTTCCA
65 CAATCGATTCTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCA
* * * * * * *
16019 AGCATAATTTCGATTCGC-ATGTTAT-CCGATCGATTTTTTATTTTTTGACTTACGGTGTTATCC
1 GGCATAATTTTGATTCACGGTGTTATCCCGATCGA-TTCTTATCTTTTAACTTACGGTGTTATCC
* * ** * *
16082 CAACCGATTCTGTAAGACCATCGGGCATGATTCCTAAAACCTTCA
65 CAATCGATTCTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCA
* * * * * *
16127 GGCATAATTTTTATTCGCGGTGTTATCCCGATCGATTCTTTATTTTTTGACTTACAGTGTTGTCC
1 GGCATAATTTTGATTCACGGTGTTATCCCGATCGATTC-TTATCTTTTAACTTACGGTGTTATCC
* * * *
16192 TAGTCGATTCTGTAAGACCTTCAGGCTTGATTTTTAAGACCTCCA
65 CAATCGATTCTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCA
* *** * * *
16237 GGCATAATTTTGATTCACGGTATTATCTTAATTGATTCTTATCTTTCAACTTAAGGTGTTATCCC
1 GGCATAATTTTGATTCACGGTGTTATCCCGATCGATTCTTATCTTTTAACTTACGGTGTTATCCC
* * **
16302 AGTCGATTCTGTAAGACC-TCTGGGTATGATTTTTAAGACCTCTG
66 AATCGATTCTGTAAGACCTTC-GGGCATGATTTTTAAGACCTCCA
* * * *
16346 GGCAT-ATTTTAGATTCACGGTGTTATCCCGATCGATTCTTTATTTTTTAACTTATGTTGTTGTC
1 GGCATAATTTT-GATTCACGGTGTTATCCCGATCGATTC-TTATCTTTTAACTTACGGTGTTATC
* * * *
16410 CCAATCAATTCTGTAAAACC-TCTGGGCATGATTTTTAAAACCTCTA
64 CCAATCGATTCTGTAAGACCTTC-GGGCATGATTTTTAAGACCTCCA
** * * *
16456 GGCATAATTTTGATTCGTGGTGTTATCCTGCTCGATTTCTTATCTTTTAACTTACGGTATTATCC
1 GGCATAATTTTGATTCACGGTGTTATCCCGATCGA-TTCTTATCTTTTAACTTACGGTGTTATCC
* *
16521 CAATCAATTCTGTAAGACCTTCGAGCATGATTTTTAAGACCTCC-
65 CAATCGATTCTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCA
* * ** * *
16565 GAGCATAATTTCGATTTATAGTGTCATCCCAATCGATTCCTTATCTTT
1 G-GCATAATTTTGATTCACGGTGTTATCCCGATCGATT-CTTATCTTT
16613 CGACCCGTAA
Statistics
Matches: 490, Mismatches: 91, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
107 12 0.02
108 81 0.17
109 111 0.23
110 276 0.56
111 10 0.02
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (109 bp):
GGCATAATTTTGATTCACGGTGTTATCCCGATCGATTCTTATCTTTTAACTTACGGTGTTATCCC
AATCGATTCTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCA
Found at i:16629 original size:110 final size:109
Alignment explanation
Indices: 15893--16687 Score: 567
Period size: 110 Copynumber: 7.3 Consensus size: 109
15883 AAGATTTTGA
* * * *
15893 GATTTGTAAGACTTTCGGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATC-TTT
1 GATTTTTAAGACCTCCGAGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTT
* * * * *
15957 CACTTGTGATGTTATCCCAGTTGATTCTGTAAGACCTCCGGGCAT
66 GAC-CGTAATGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCAT
* * * * *
16002 GATTTTTAAGACTTCCAAGCATAATTTCGATTCGC-ATGTTAT-CCGATCGATTTTTTATTTTTT
1 GATTTTTAAGACCTCCGAGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTT
* * ** *
16065 GA-CTTACGGTGTTATCCCAACCGATTCTGTAAGACCATCGGGCAT
66 GACCGTA--ATGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCAT
** * * ** *
16110 GATTCCTAAAACCTTC-AGGCATAATTTTTATTCGCGGTGTTATCCCGATCGATTCTTTATTTTT
1 GATTTTTAAGACCTCCGA-GCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTT
* * * * *
16174 TGA-CTTACAGTGTTGTCCTAGTCGATTCTGTAAGACCTTCAGGCTT
65 TGACCGTA-A-TGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCAT
* * * *** *
16220 GATTTTTAAGACCTCC-AGGCATAATTTTGATTCACGGTATTATCTTAATTGATTC-TTATC-TT
1 GATTTTTAAGACCTCCGA-GCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTT
* * * *
16282 TCAACTTAAGGTGTTATCCCAGTCGATTCTGTAAGACC-TCTGGGTAT
65 TGACCGTAA--TGTTATCCCAGTCGATTCTGTAAGACCTTC-GGGCAT
* * * * *
16329 GATTTTTAAGACCTCTGGGCATATTTTAGATTCACGGTGTTATCCCGATCGATTCTTTAT-TTTT
1 GATTTTTAAGACCTCCGAGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTT
* * * * * * * *
16393 TAACTTATGTTGTTGTCCCAATCAATTCTGTAAAACC-TCTGGGCAT
66 GACCGTA--ATGTTATCCCAGTCGATTCTGTAAGACCTTC-GGGCAT
* * * * * *
16439 GATTTTTAAAACCT-CTAGGCATAATTTTGATTCGTGGTGTTATCCTGCTCGATT-TCTTATCTT
1 GATTTTTAAGACCTCCGA-GCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCT-TTATCTT
* * * * * * *
16502 TT-AACTTACGGTATTATCCCAATCAATTCTGTAAGACCTTCGAGCAT
64 TTGACCGTA--ATGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCAT
**** * * * *
16549 GATTTTTAAGACCTCCGAGCATAATTTCGATTTATAGTGTCATCCCAATCGATTCCTTATCTTTC
1 GATTTTTAAGACCTCCGAGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTT
* * * *
16614 GACCCGTAATGTTATCCTAGTCGATTCTGTAAAACCTCCGAGCAT
66 GA-CCGTAATGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCAT
* * *
16659 GATTCTGTAAGACCTTCGAGCATGATTTC
1 GATT-TTTAAGACCTCCGAGCATAATTTC
16688 TAAGATCTTC
Statistics
Matches: 553, Mismatches: 109, Indels: 46
0.78 0.15 0.06
Matches are distributed among these distances:
106 1 0.00
107 16 0.03
108 74 0.13
109 120 0.22
110 309 0.56
111 30 0.05
112 3 0.01
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (109 bp):
GATTTTTAAGACCTCCGAGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTT
GACCGTAATGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCAT
Found at i:16662 original size:23 final size:23
Alignment explanation
Indices: 16636--16685 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
16626 TATCCTAGTC
16636 GATTCTGTAAAACCTCCGAGCAT
1 GATTCTGTAAAACCTCCGAGCAT
* *
16659 GATTCTGTAAGACCTTCGAGCAT
1 GATTCTGTAAAACCTCCGAGCAT
16682 GATT
1 GATT
16686 TCTAAGATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (23 bp):
GATTCTGTAAAACCTCCGAGCAT
Found at i:16697 original size:22 final size:22
Alignment explanation
Indices: 16647--16725 Score: 106
Period size: 22 Copynumber: 3.5 Consensus size: 22
16637 ATTCTGTAAA
* *
16647 ACCTCCGAGCATGATTCTGTAAG
1 ACCTTCGAGCATGATT-TCTAAG
16670 ACCTTCGAGCATGATTTCTAAG
1 ACCTTCGAGCATGATTTCTAAG
*
16692 ATCTTC-AGACATGATTTCTAAG
1 ACCTTCGAG-CATGATTTCTAAG
16714 ACCTTCGAGCAT
1 ACCTTCGAGCAT
16726 AAATTCGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
21 2 0.04
22 31 0.62
23 17 0.34
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (22 bp):
ACCTTCGAGCATGATTTCTAAG
Found at i:16833 original size:22 final size:22
Alignment explanation
Indices: 16808--16850 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
16798 TAAGATCTTC
16808 GGACATGAATCT-TAAGACCTCT
1 GGACATG-ATCTCTAAGACCTCT
*
16830 GGACATGATTTCTAAGACCTC
1 GGACATGATCTCTAAGACCTC
16851 CAGGCATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (22 bp):
GGACATGATCTCTAAGACCTCT
Found at i:17140 original size:16 final size:16
Alignment explanation
Indices: 17111--17154 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
17101 TTAATTAATT
*
17111 AAAACAAAACAAAAACA
1 AAAATAAAA-AAAAACA
*
17128 AAAATAAAAAAAAAGA
1 AAAATAAAAAAAAACA
*
17144 GAAATAAAAAA
1 AAAATAAAAAA
17155 TGGCAGAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 16 0.67
17 8 0.33
ACGTcount: A:0.84, C:0.07, G:0.05, T:0.05
Consensus pattern (16 bp):
AAAATAAAAAAAAACA
Found at i:18549 original size:9 final size:9
Alignment explanation
Indices: 18525--18566 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
18515 CAATTTGTCC
*
18525 TGTATTATTT
1 TGTATT-TTA
18535 TGTATTTTA
1 TGTATTTTA
18544 TGTATTTTA
1 TGTATTTTA
18553 TGTATTTTA
1 TGTATTTTA
18562 T-TATT
1 TGTATT
18567 ATGTATATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 4 0.13
9 21 0.68
10 6 0.19
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (9 bp):
TGTATTTTA
Found at i:18558 original size:18 final size:19
Alignment explanation
Indices: 18525--18578 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
18515 CAATTTGTCC
*
18525 TGTATTATTTTGTATTTTA
1 TGTATTATTATGTATTTTA
18544 TGTATT-TTATGTATTTTA
1 TGTATTATTATGTATTTTA
*
18562 T-TATTATGTATATATTT
1 TGTATTAT-TATGTATTT
18579 ATTTATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 4 0.13
18 13 0.42
19 14 0.45
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (19 bp):
TGTATTATTATGTATTTTA
Found at i:19046 original size:26 final size:24
Alignment explanation
Indices: 19004--19057 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
18994 CTGGGAGTGA
*
19004 GAAAAATTTTTTAGAAATTTTTGG
1 GAAAAATTTTTTAGAAATTTCTGG
* *
19028 CGAAAATTTTTTCTGGAAATTTCTGG
1 -GAAAAATTTTT-TAGAAATTTCTGG
19054 GAAA
1 GAAA
19058 TTTCCAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.41
Consensus pattern (24 bp):
GAAAAATTTTTTAGAAATTTCTGG
Found at i:19222 original size:20 final size:20
Alignment explanation
Indices: 19197--19234 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
19187 ACTTCCGGTG
*
19197 AAATTTCCAGATTCCGGCGA
1 AAATTTCCAGAATCCGGCGA
19217 AAATTTCCAGAATCCGGC
1 AAATTTCCAGAATCCGGC
19235 ACCGGTGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (20 bp):
AAATTTCCAGAATCCGGCGA
Found at i:19600 original size:25 final size:25
Alignment explanation
Indices: 19553--19600 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
19543 CGCTCCAGGT
** * *
19553 TTTTTTTTTTTTTTTTTTCTTTGAA
1 TTTTTTTTTCCTTTGTTTATTTGAA
19578 TTTTTTTTTCCTTTGTTTATTTG
1 TTTTTTTTTCCTTTGTTTATTTG
19601 TTTATTTCAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.81
Consensus pattern (25 bp):
TTTTTTTTTCCTTTGTTTATTTGAA
Found at i:19835 original size:116 final size:118
Alignment explanation
Indices: 19698--20157 Score: 639
Period size: 116 Copynumber: 3.9 Consensus size: 118
19688 AAAAAAATTC
* *
19698 CAAAAAATATATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTTCTT-AGAAAT-AAATTTCC
1 CAAAAAA-AAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAATTTCC
*
19760 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAA-TTT
63 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
*
19815 CAAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTT-AGAAAT-AAAATTCCA
1 CAAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAATTTCCA
* *
19877 AAAACTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAGAAATAAATTTT
64 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
19932 CAAAAAAAAA-AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAATTTC
1 CAAAAAAAAATA---TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAATTTC
19996 CAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
62 C--AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
**** *
20055 CAAAAAAATGGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAATTTTCA
1 CAAAAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAATTTCCA
*
20120 AAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT
64 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
20158 TCCTACAAAA
Statistics
Matches: 317, Mismatches: 14, Indels: 21
0.90 0.04 0.06
Matches are distributed among these distances:
116 101 0.32
117 20 0.06
119 37 0.12
120 40 0.13
121 7 0.02
122 50 0.16
123 62 0.20
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (118 bp):
CAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTTCCAAA
AAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
Found at i:19941 original size:61 final size:61
Alignment explanation
Indices: 19698--20157 Score: 496
Period size: 57 Copynumber: 7.7 Consensus size: 61
19688 AAAAAAATTC
* * *
19698 CAAAAAATATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTT-AGAAAT-AAA-TTT
1 CAAAAAA-AAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAATTTT
* *
19758 C--CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC-TCAGAAAT-AAA-TTT
1 CAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAATTTT
* *
19815 CAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-AGAAAT-AAA-ATT
1 CAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAATTTT
* * *
19874 C--CAAAAACTATTTTTGGGGAAAAGTTGAAAGTATCAATTTT-CTTTAGAAAT-AAATTTT
1 CAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAATTTT
*
19932 CAAAAAAAAA-AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAA-TTT
1 CAAAAAAAAATA---TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAATTTT
*
19995 CCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AGAAAT-AAATTTT
1 CAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAATTTT
**** *
20055 CAAAAAAATGGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAATTTT
1 CAAAAAAA-AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAATTTT
*
20118 C---AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT
1 CAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
20158 TCCTACAAAA
Statistics
Matches: 350, Mismatches: 29, Indels: 43
0.83 0.07 0.10
Matches are distributed among these distances:
56 4 0.01
57 94 0.27
58 6 0.02
59 85 0.24
60 22 0.06
61 76 0.22
62 35 0.10
63 24 0.07
64 4 0.01
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (61 bp):
CAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTTT
Done.