Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168345.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_567, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22804
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.24
Found at i:682 original size:26 final size:26
Alignment explanation
Indices: 646--698 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
636 CCGATACGAT
646 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
672 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
698 C
1 C
699 CTAGGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:981 original size:179 final size:179
Alignment explanation
Indices: 637--986 Score: 398
Period size: 179 Copynumber: 2.0 Consensus size: 179
627 ACCCTCGGTC
* * * **
637 CGATACGATCTTAGATTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCATATGCCTA
1 CGATACGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCATATAACTA
* * * * *
702 GGTCAACCCACGAAACGAACGTACGGGCGCTCAACCGACGAAAGGGGTAGGATGCACAAGCCGGG
66 AGTCAACCCACGAAACGAACGTACGAGCGCTCAACCGACCAAAGGAGTAGGATGCACAAGCCAGG
* * **
767 GATCAATCGAGTCCCCCTTTGTGTGCTACCGATCCTGCTACCCTTGATT
131 GATCAACCGAGTCCCCCTCTACGTGCTACCGATCCTGCTACCCTTGATT
* * *
816 CGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGAGAATGAACTCCATATAACTA
1 CGATACGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCATATAACTA
* * *** * **
881 AGTCAACCCACGAAAC-AAGTGTACGAGCGCTTAGTTGACCAGAGGAGTAGCG-TGCGTAAGCCA
66 AGTCAACCCACGAAACGAA-CGTACGAGCGCTCAACCGACCAAAGGAGTAG-GATGCACAAGCCA
* * * * *
944 GGGATCAGCCGGGTCTCTCTCTACGTGCTATCGATCCTGCTAC
129 GGGATCAACCGAGTCCCCCTCTACGTGCTACCGATCCTGCTAC
987 TGTAACCCTC
Statistics
Matches: 139, Mismatches: 30, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
178 2 0.01
179 136 0.98
180 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (179 bp):
CGATACGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCATATAACTA
AGTCAACCCACGAAACGAACGTACGAGCGCTCAACCGACCAAAGGAGTAGGATGCACAAGCCAGG
GATCAACCGAGTCCCCCTCTACGTGCTACCGATCCTGCTACCCTTGATT
Found at i:8211 original size:26 final size:26
Alignment explanation
Indices: 8162--8211 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
8152 GTTCGATCTG
* *
8162 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTAGGAATGAACTCTGCATGCTT
8188 AGACTAGGAATGAACT-TCGCATGC
1 AGACTAGGAATGAACTCT-GCATGC
8212 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTAGGAATGAACTCTGCATGCTT
Found at i:8941 original size:11 final size:11
Alignment explanation
Indices: 8925--8959 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
8915 CGGTTAGGTT
8925 CTCCGACGATG
1 CTCCGACGATG
8936 CTCCGACGATG
1 CTCCGACGATG
* *
8947 CTCTGGCGATG
1 CTCCGACGATG
8958 CT
1 CT
8960 ACCCCTGGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.14, C:0.34, G:0.29, T:0.23
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:9389 original size:90 final size:90
Alignment explanation
Indices: 9142--10482 Score: 504
Period size: 90 Copynumber: 14.6 Consensus size: 90
9132 GCCTCGATCG
* * ** * * * * * * *
9142 CCATCGGCACAAGCTGGGCCCTGGTGTAGGCGATCGCCTTGATCACCATTGGCACATGCTGGGCC
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGCTGGGCC
* * * * *
9207 TTGGTACAGGCGGTTGCCTCGACCA
66 CTGGTGCGGGCGGTTGCATCGAACA
* * * * * * * * *
9232 CCATCGGCACAAGTTTGCCCCTGGTGCGGACGGTTGCCTCAACCACCATCGACACATGCTGGGCC
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGCTGGGCC
** *
9297 CTGGTGCGGGCTATTGCATCGAGCA
66 CTGGTGCGGGCGGTTGCATCGAACA
* * * * * *
9322 CCATCGGCATACGCTAGGCCCTGGTGCAGGCGGTTGCCTCGACCACCATCAGA-AGAAGATGGAC
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATC-GACACAAGCTGGGC
9386 CCTGGTGCGGGCGGTTGCA-CTGAACA
65 CCTGGTGCGGGCGGTTGCATC-GAACA
** * * * * * *
9412 TAATCGGCACACGTTGGGCCCTGGTACGGGTGGTTGCCTCGAGCACCATCGGCACACGCTGGGCC
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGCTGGGCC
* * *
9477 CTGGTGTGGGTGGTTGCCTCGAACA
66 CTGGTGCGGGCGGTTGCATCGAACA
* * *
9502 CCATCGGCATACACTGGGCCCTAGTACGGGCGGTTGCCTCGAGCACCATCGACACACA-CTGGGC
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACA-AGCTGGGC
* * ** * *
9566 CCTAGTACAAGCGGTTGCCTCGATCA
65 CCTGGTGCGGGCGGTTGCATCGAACA
* * * * *
9592 CCATCGCCATACGCTGGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGCACACGTTGGGCC
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGCTGGGCC
* * * * *
9657 CTGGTGTGAGTGGTTACCTC-AAGCA
66 CTGGTGCGGGCGGTTGCATCGAA-CA
* * * * *
9682 CCATTGACACACGCTGGTCGATCACCATCGACACATGCTGGGCCCTAGTGCGGGCGGTTGCCTCA
1 CCATCGGCATACGCTGG--G--C-CC-T-G----GTGC-GGGC------------GGTTGCCTCG
* * * * * * *
9747 ATCACCATCGGCACACGTTGGGCCCTGATGCGGGCGGTTGCCTCGAGCA
42 AGCACCATCGACACAAGCTGGGCCCTGGTGCGGGCGGTTGCATCGAACA
* * * * *
9796 CCATCGGCACACGCTGGGCCC-GAGTG-GGAGCGGTTGCCTCGAGCACCATCGGCATATGCTAGG
1 CCATCGGCATACGCTGGGCCCTG-GTGCGG-GCGGTTGCCTCGAGCACCATCGACACAAGCTGGG
* * * *
9859 CTCTGGTGCGGGTGGTTGCCTC-AGTCA
64 CCCTGGTGCGGGCGGTTGCATCGA-ACA
* * * * * * * * * *
9886 CCATCGGCACACGTTGGGCCTTAGTGCGGGCGATTGCCTTGAGCGCCATCGGCACACGTTGGGCC
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGCTGGGCC
* * * * * * *
9951 TTAGTGCGGGCGATTGCCTTGAGCG
66 CTGGTGCGGGCGGTTGCATCGAACA
* * * * * * * * * *
9976 CCATCGGCACACACTGGGCCCTAGTGTGGGCAGTTGCCTGGAACATCATCGGCACAGGCTGGGCC
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGCTGGGCC
** * **** **
10041 CTCACTATC-GGCACACGC-T-GGGC-
66 CT-GGT-GCGGGCGGTTGCATCGAACA
* * * ** * * *** * * * *
10064 CCTGGTGCGGGCGGT-TGCCTTGAACACCATCG-ACACAC-GCTG-GTTGATCACCATCGACACA
1 CC--AT-C-GGC-ATACG-C-TGGGC-CC-TGGTGCGGGCGGTTGCCTCGAGCACCATCGACACA
* * * * *
10125 CGCTGGGCCTTGGTGCGGGCGGTTGCCTTGATCA
57 AGCTGGGCCCTGGTGCGGGCGGTTGCATCGAACA
* * * * * * * * * * *
10159 CCCTCGGTACACGCTAGGCCCTGGTGCGGGAGGTTACCTTGAGCACCAACGGCACATGTTGGGCC
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGCTGGGCC
* *
10224 CTGGTGCGGGCGGTTGCCTTGAACA
66 CTGGTGCGGGCGGTTGCATCGAACA
* * * * *** * * * * *
10249 CCATCGACACACGCTGGTCGATCACCATCG-ACACAC-GCTG-GTCGATCACCATCGACACACGT
1 CCATCGGCATACGCTGG--G--C-CC-TGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGC
* * *
10311 TGGGCCCTAGTGCGGGCGGTTGCCTCGATCA
60 TGGGCCCTGGTGCGGGCGGTTGCATCGAACA
* * * * * *
10342 CCATCGGCACACGCTAGGCCCTGGTGCGGGAGGTTGCCTCGAGCACCAACGGCACACGCTGGGCC
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGCTGGGCC
* * * *
10407 CTGGTGCAGGCGGTTGCCTTGACCA
66 CTGGTGCGGGCGGTTGCATCGAACA
* *
10432 CCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCG
1 CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCG
10483 GACGGTTGCC
Statistics
Matches: 943, Mismatches: 243, Indels: 130
0.72 0.18 0.10
Matches are distributed among these distances:
87 4 0.00
88 8 0.01
89 15 0.02
90 687 0.73
91 19 0.02
92 13 0.01
93 85 0.09
94 12 0.01
95 10 0.01
96 5 0.01
97 1 0.00
101 6 0.01
102 6 0.01
103 2 0.00
106 1 0.00
109 2 0.00
110 1 0.00
112 1 0.00
114 64 0.07
115 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (90 bp):
CCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACAAGCTGGGCC
CTGGTGCGGGCGGTTGCATCGAACA
Found at i:9682 original size:45 final size:45
Alignment explanation
Indices: 9118--9698 Score: 480
Period size: 45 Copynumber: 12.9 Consensus size: 45
9108 GGCTGCCCTT
** * * *
9118 TGGTACGGGCACTTGCCTCGATCGCCATCGGCACAAGCTGGGCCC
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
*** * * * * * * *
9163 TGGTGTAGGCGATCGCCTTGATCACCATTGGCACATGCTGGGCCT
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
* * * * * *
9208 TGGTACAGGCGGTTGCCTCGACCACCATCGGCACAAGTTTGCCCC
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
* * * * * *
9253 TGGTGCGGACGGTTGCCTCAACCACCATCGACACATGCTGGGCCC
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
* ** * * *
9298 TGGTGCGGGCTATTGCATCGAGCACCATCGGCATACGCTAGGCCC
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
* * * * * * * * *
9343 TGGTGCAGGCGGTTGCCTCGACCACCATCAGAAGAAGATGGACCC
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
* * ** *
9388 TGGTGCGGGCGGTTGCACT-GAACATAATCGGCACACGTTGGGCCC
1 TGGTACGGGCGGTTGC-CTCGAGCACCATCGGCACACGCTGGGCCC
*
9433 TGGTACGGGTGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
** * * * *
9478 TGGTGTGGGTGGTTGCCTCGAACACCATCGGCATACACTGGGCCC
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
* * *
9523 TAGTACGGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCC
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
* ** * * *
9568 TAGTACAAGCGGTTGCCTCGATCACCATCGCCATACGCTGGGCCC
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
* * *
9613 TGATGCGGGCGGTTGCCTCGAGCACCATCGGCACACGTTGGGCCC
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
** * * * * * *
9658 TGGTGTGAGTGGTTACCTCAAGCACCATTGACACACGCTGG
1 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGG
9699 TCGATCACCA
Statistics
Matches: 428, Mismatches: 106, Indels: 4
0.80 0.20 0.01
Matches are distributed among these distances:
44 2 0.00
45 424 0.99
46 2 0.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.20
Consensus pattern (45 bp):
TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
Found at i:9753 original size:69 final size:69
Alignment explanation
Indices: 9630--9763 Score: 160
Period size: 69 Copynumber: 1.9 Consensus size: 69
9620 GGCGGTTGCC
* * * * * *
9630 TCGAGCACCATCGGCACACGTTGGGCCCTGGTGTGAGTGGTTACCTCAAGCACCATTGACACACG
1 TCGAGCACCATCGACACACGCTGGGCCCTAGTGCGAGCGGTTACCTCAAGCACCATCGACACACG
9695 CTGG
66 CTGG
* * * * * *
9699 TCGATCACCATCGACACATGCTGGGCCCTAGTGCGGGCGGTTGCCTCAATCACCATCGGCACACG
1 TCGAGCACCATCGACACACGCTGGGCCCTAGTGCGAGCGGTTACCTCAAGCACCATCGACACACG
9764 TTGGGCCCTG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 53 1.00
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (69 bp):
TCGAGCACCATCGACACACGCTGGGCCCTAGTGCGAGCGGTTACCTCAAGCACCATCGACACACG
CTGG
Found at i:9769 original size:45 final size:45
Alignment explanation
Indices: 9699--10483 Score: 475
Period size: 45 Copynumber: 17.3 Consensus size: 45
9689 CACACGCTGG
* *
9699 TCGATCACCATCGACACATGCTGGGCCCTAGTGCGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* *
9744 TCAATCACCATCGGCACACGTTGGGCCCT-GATGCGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAG-TGCGGGCGGTTGCC
* *
9789 TCGAGCACCATCGGCACACGCTGGGCCCGAGTG-GGAGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGG-GCGGTTGCC
* * * * * * *
9834 TCGAGCACCATCGGCATATGCTAGGCTCTGGTGCGGGTGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* * *
9879 TC-AGTCACCATCGGCACACGTTGGGCCTTAGTGCGGGCGATTGCC
1 TCGA-TCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* * * * * *
9924 TTGAGCGCCATCGGCACACGTTGGGCCTTAGTGCGGGCGATTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* * * * * *
9969 TTGAGCGCCATCGGCACACACTGGGCCCTAGTGTGGGCAGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* * * * * * * * *
10014 TGGAACATCATCGGCACAGGCTGGGCCCTCACTATCGGCACACGCTGGGCC
1 TCGATCACCATCGGCACACGCTGGGCCCT-AGT-GCGG---GCGGT-TGCC
* * *** ** * ** ** * * *
10065 -CTGGT-GCGGGCGGTTGC-C-TTGAACACC-A-T-CGACACACGCTG-G
1 TC-GATCACCATCGG-CACACGCTGGGC-CCTAGTGCG-GGC-GGTTGCC
* * * *
10107 TTGATCACCATCGACACACGCTGGGCCTTGGTGCGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* * * * * * *
10152 TTGATCACCCTCGGTACACGCTAGGCCCTGGTGCGGGAGGTTACC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* * * * * *
10197 TTGAGCACCAACGGCACATGTTGGGCCCTGGTGCGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* * * ** * * *
10242 TTGAACACCATCGACACACGCTGGTCGATCACC-A-T-CGACACACGCTG-G
1 TCGATCACCATCGGCACACGCTGG--G--C-CCTAGTGCG-GGC-GGTTGCC
* *
10290 TCGATCACCATCGACACACGTTGGGCCCTAGTGCGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* * *
10335 TCGATCACCATCGGCACACGCTAGGCCCTGGTGCGGGAGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* * * *
10380 TCGAGCACCAACGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
* * *
10425 TTGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
10470 TCGATCACCATCGG
1 TCGATCACCATCGG
10484 ACGGTTGCCT
Statistics
Matches: 567, Mismatches: 137, Indels: 72
0.73 0.18 0.09
Matches are distributed among these distances:
42 3 0.01
43 10 0.02
44 15 0.03
45 477 0.84
46 11 0.02
47 6 0.01
48 24 0.04
49 7 0.01
50 9 0.02
51 5 0.01
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.19
Consensus pattern (45 bp):
TCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTTGCC
Found at i:9796 original size:114 final size:114
Alignment explanation
Indices: 9585--9812 Score: 323
Period size: 114 Copynumber: 2.0 Consensus size: 114
9575 AGCGGTTGCC
* * *
9585 TCGATCACCATCGCCATACGCTGGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGCACACG
1 TCGATCACCATCGACACACGCTGGGCCCTGATGCGGGCGGTTGCCTCAAGCACCATCGGCACACG
* * * *
9650 TTGGGCCCTGGTGTGAGTGGTTACCTCAAGCACCATTGACACACGCTGG
66 TTGGGCCCTGATGCGAGCGGTTACCTCAAGCACCATCGACACACGCTGG
* *
9699 TCGATCACCATCGACACATGCTGGGCCCT-AGTGCGGGCGGTTGCCTCAATCACCATCGGCACAC
1 TCGATCACCATCGACACACGCTGGGCCCTGA-TGCGGGCGGTTGCCTCAAGCACCATCGGCACAC
* * * *
9763 GTTGGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGG
65 GTTGGGCCCTGATGCGAGCGGTTACCTCAAGCACCATCGACACACGCTGG
9813 GCCCGAGTGG
Statistics
Matches: 100, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
113 1 0.01
114 99 0.99
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.19
Consensus pattern (114 bp):
TCGATCACCATCGACACACGCTGGGCCCTGATGCGGGCGGTTGCCTCAAGCACCATCGGCACACG
TTGGGCCCTGATGCGAGCGGTTACCTCAAGCACCATCGACACACGCTGG
Found at i:9841 original size:159 final size:159
Alignment explanation
Indices: 9540--9844 Score: 459
Period size: 159 Copynumber: 1.9 Consensus size: 159
9530 GGCGGTTGCC
* *
9540 TCGAGCACCATCGACACACACTGGGCCCTAGTACAAGCGGTTGCCTCGATCACCATCGCCATACG
1 TCGAGCACCATCGACACACACTGGGCCCTAGTACAAGCGGTTGCCTCAATCACCATCGCCACACG
* * *
9605 CTGGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGCACACGTTGGGCCCTGGTGTGAGTGG
66 CTGGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGGGAGCGG
9670 TTACCTCAAGCACCATTGACACACGCTGG
131 TTACCTCAAGCACCATTGACACACGCTGG
* ** * ** *
9699 TCGATCACCATCGACACATGCTGGGCCCTAGTGCGGGCGGTTGCCTCAATCACCATCGGCACACG
1 TCGAGCACCATCGACACACACTGGGCCCTAGTACAAGCGGTTGCCTCAATCACCATCGCCACACG
*
9764 TTGGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC-GAGTGGGAGCG
66 CTGGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTG-GTGGGAGCG
* *
9828 GTTGCCTCGAGCACCAT
130 GTTACCTCAAGCACCAT
9845 CGGCATATGC
Statistics
Matches: 130, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
158 1 0.01
159 129 0.99
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.18
Consensus pattern (159 bp):
TCGAGCACCATCGACACACACTGGGCCCTAGTACAAGCGGTTGCCTCAATCACCATCGCCACACG
CTGGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGGGAGCGG
TTACCTCAAGCACCATTGACACACGCTGG
Found at i:9893 original size:249 final size:249
Alignment explanation
Indices: 9450--9905 Score: 657
Period size: 249 Copynumber: 1.8 Consensus size: 249
9440 GGTGGTTGCC
* * * * *
9450 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGTGGGTGGTTGCCTCGAACACCATCGGCATACA
1 TCGAGCACCATCGACACACGCTGGGCCCTAGTGCGGGCGGTTGCCTCGAACACCATCGGCACACA
*
9515 CTGGGCCCTAGTACGGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCCTAGTACAAGCGG
66 CTGGGCCCTAGTACGGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCCGAGTACAAGCGG
* *
9580 TTGCCTCGATCACCATCGCCATACGCTGGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGC
131 TTGCCTCGAGCACCATCGCCATACGCTAGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGC
9645 ACACGTTGGGCCCTGGTGTGAGTGGTTACCTCAAGCACCATTGACACACGCTGG
196 ACACGTTGGGCCCTGGTGTGAGTGGTTACCTCAAGCACCATTGACACACGCTGG
* *
9699 TCGATCACCATCGACACATGCTGGGCCCTAGTGCGGGCGGTTGCCTC-AATCACCATCGGCACAC
1 TCGAGCACCATCGACACACGCTGGGCCCTAGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAC
** * * * ***
9763 GTTGGGCCCT-GATGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCGAGTGGGAGC
65 ACTGGGCCCTAG-TACGGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCCGAGTACAAGC
* * * * *
9827 GGTTGCCTCGAGCACCATCGGCATATGCTAGGCTCTGGTGCGGGTGGTTGCCTC-AGTCACCATC
129 GGTTGCCTCGAGCACCATCGCCATACGCTAGGCCCTGATGCGGGCGGTTGCCTCGAG-CACCATC
9891 GGCACACGTTGGGCC
193 GGCACACGTTGGGCC
9906 TTAGTGCGGG
Statistics
Matches: 181, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
248 5 0.03
249 176 0.97
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (249 bp):
TCGAGCACCATCGACACACGCTGGGCCCTAGTGCGGGCGGTTGCCTCGAACACCATCGGCACACA
CTGGGCCCTAGTACGGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCCGAGTACAAGCGG
TTGCCTCGAGCACCATCGCCATACGCTAGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGC
ACACGTTGGGCCCTGGTGTGAGTGGTTACCTCAAGCACCATTGACACACGCTGG
Found at i:10063 original size:339 final size:338
Alignment explanation
Indices: 9385--10102 Score: 852
Period size: 339 Copynumber: 2.1 Consensus size: 338
9375 AGAAGATGGA
** * *
9385 CCCTGGTGCGGGCGGTTGCACTGAACATAATCGGCACACGTTGGGCCCTGGTACGGGTGGTTGCC
1 CCCTGGTGCGGGCGGTTGC-CTGAACACCATCGGCACACGTTGGGCCCTGATACGGGCGGTTGCC
*
9450 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGTGGGTGGTTGCCTCGAACACCATCGGCATACA
65 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGTGGGCGGTTGCCTCGAACACCATCGGCATACA
* *
9515 CTGGGCCCTAGTACGGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCCTAGTACAAGCGG
130 CTAGGCCCTAGTACGGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCCTAGTACAAGCGA
* * *
9580 TTGCCTCGATCACCATCGCCATACGCTGGGCCCTGATGCGGGCGGTTGCCTCGAGCACCATCGGC
195 TTGCCTCGAGCACCATCGCCACACGCTGGGCCCTGATGCGGGCGATTGCCTCGAGCACCATCGGC
** * ** * * *
9645 ACACGTTGGGCCCTGGTGTGAGTGGTTACCTCAAGCACCATTGACACACGCTGGTCGATCACCAT
260 ACACACTGGGCCCTAGTGTGAGCAGTTACCTCAAGCACCATCGACACACGCTGGGCCATCACCAT
*
9710 CGACACATGCTGGG
325 CGACACACGCTGGG
* * *
9724 CCCTAGTGCGGGCGGTTGCCTCAATCACCATCGGCACACGTTGGGCCCTGATGCGGGCGGTTGCC
1 CCCTGGTGCGGGCGGTTGCCTGAA-CACCATCGGCACACGTTGGGCCCTGATACGGGCGGTTGCC
*
9789 TCGAGCACCATCGGCACACGCTGGGCCC-GAGTG-GGAGCGGTTGCCTCGAGCACCATCGGCATA
65 TCGAGCACCATCGGCACACGCTGGGCCCTG-GTGTGG-GCGGTTGCCTCGAACACCATCGGCATA
** * * * * * ** * * **
9852 TGCTAGGCTCTGGTGCGGGTGGTTGCCTC-AGTCACCATCGGCACACGTTGGGCCTTAGTGCGGG
128 CACTAGGCCCTAGTACGGGCGGTTGCCTCGAG-CACCATCGACACACACTGGGCCCTAGTACAAG
* * * * * * *
9916 CGATTGCCTTGAGCGCCATCGGCACACGTTGGG-CCTTAGTGCGGGCGATTGCCTTGAGCGCCAT
192 CGATTGCCTCGAGCACCATCGCCACACGCTGGGCCCTGA-TGCGGGCGATTGCCTCGAGCACCAT
* * * * * * *
9980 CGGCACACACTGGGCCCTAGTGTGGGCAGTTGCCTGGAA-CATCATCGGCACAGGCTGGGCCCTC
256 CGGCACACACTGGGCCCTAGTGTGAGCAGTTACCT-CAAGCACCATCGACACACGCTGGGCCATC
* *
10044 ACTATCGGCACACGCTGGG
320 ACCATCGACACACGCTGGG
*
10063 CCCTGGTGCGGGCGGTTGCCTTGAACACCATCGACACACG
1 CCCTGGTGCGGGCGGTTGCC-TGAACACCATCGGCACACG
10103 CTGGTTGATC
Statistics
Matches: 317, Mismatches: 55, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
338 13 0.04
339 299 0.94
340 5 0.02
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.19
Consensus pattern (338 bp):
CCCTGGTGCGGGCGGTTGCCTGAACACCATCGGCACACGTTGGGCCCTGATACGGGCGGTTGCCT
CGAGCACCATCGGCACACGCTGGGCCCTGGTGTGGGCGGTTGCCTCGAACACCATCGGCATACAC
TAGGCCCTAGTACGGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCCTAGTACAAGCGAT
TGCCTCGAGCACCATCGCCACACGCTGGGCCCTGATGCGGGCGATTGCCTCGAGCACCATCGGCA
CACACTGGGCCCTAGTGTGAGCAGTTACCTCAAGCACCATCGACACACGCTGGGCCATCACCATC
GACACACGCTGGG
Found at i:10089 original size:69 final size:69
Alignment explanation
Indices: 9976--10178 Score: 226
Period size: 69 Copynumber: 2.9 Consensus size: 69
9966 GCCTTGAGCG
* * * * * * * *
9976 CCATCGGCACACACTGGGCCCTAGTGTGGGCAGTTGCCTGGAACATCATCGGCACAGGCTGGGCC
1 CCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTTGAACACCATCGACACACGCTGGGCC
*
10041 CTCA
66 ATCA
* ***
10045 CTATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTTGAACACCATCGACACACGCTGGTTG
1 CCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTTGAACACCATCGACACACGCTGGGCC
10110 ATCA
66 ATCA
* * * * ** *
10114 CCATCGACACACGCTGGGCCTTGGTGCGGGCGGTTGCCTTGATCACCCTCGGTACACGCTAGGCC
1 CCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTTGAACACCATCGACACACGCTGGGCC
10179 CTGGTGCGGG
Statistics
Matches: 110, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 110 1.00
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (69 bp):
CCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTTGAACACCATCGACACACGCTGGGCC
ATCA
Found at i:10115 original size:24 final size:24
Alignment explanation
Indices: 10083--10130 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
10073 GGCGGTTGCC
10083 TTGAACACCATCGACACACGCTGG
1 TTGAACACCATCGACACACGCTGG
*
10107 TTGATCACCATCGACACACGCTGG
1 TTGAACACCATCGACACACGCTGG
10131 GCCTTGGTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.19
Consensus pattern (24 bp):
TTGAACACCATCGACACACGCTGG
Found at i:10279 original size:24 final size:24
Alignment explanation
Indices: 10247--10309 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
10237 TTGCCTTGAA
10247 CACCATCGACACACGCTGGTCGAT
1 CACCATCGACACACGCTGGTCGAT
10271 CACCATCGACACACGCTGGTCGAT
1 CACCATCGACACACGCTGGTCGAT
10295 CACCATCGACACACG
1 CACCATCGACACACG
10310 TTGGGCCCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.27, C:0.40, G:0.19, T:0.14
Consensus pattern (24 bp):
CACCATCGACACACGCTGGTCGAT
Found at i:10280 original size:183 final size:183
Alignment explanation
Indices: 10088--10448 Score: 596
Period size: 183 Copynumber: 2.0 Consensus size: 183
10078 TTGCCTTGAA
* * *
10088 CACCATCGACACACGCTGGTTGATCACCATCGACACACGCTGGGCCTTGGTGCGGGCGGTTGCCT
1 CACCATCGACACACGCTGGTCGATCACCATCGACACACGCTGGGCCCTAGTGCGGGCGGTTGCCT
* * * * * *
10153 TGATCACCCTCGGTACACGCTAGGCCCTGGTGCGGGAGGTTACCTTGAGCACCAACGGCACATGT
66 CGATCACCATCGGCACACGCTAGGCCCTGGTGCGGGAGGTTACCTCGAGCACCAACGGCACACGC
*
10218 TGGGCCCTGGTGCGGGCGGTTGCCTTGAACACCATCGACACACGCTGGTCGAT
131 TGGGCCCTGGTGCAGGCGGTTGCCTTGAACACCATCGACACACGCTGGTCGAT
*
10271 CACCATCGACACACGCTGGTCGATCACCATCGACACACGTTGGGCCCTAGTGCGGGCGGTTGCCT
1 CACCATCGACACACGCTGGTCGATCACCATCGACACACGCTGGGCCCTAGTGCGGGCGGTTGCCT
*
10336 CGATCACCATCGGCACACGCTAGGCCCTGGTGCGGGAGGTTGCCTCGAGCACCAACGGCACACGC
66 CGATCACCATCGGCACACGCTAGGCCCTGGTGCGGGAGGTTACCTCGAGCACCAACGGCACACGC
* *
10401 TGGGCCCTGGTGCAGGCGGTTGCCTTGACCACCATCGGCACACGCTGG
131 TGGGCCCTGGTGCAGGCGGTTGCCTTGAACACCATCGACACACGCTGG
10449 GCCCTGGTGC
Statistics
Matches: 164, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
183 164 1.00
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.18
Consensus pattern (183 bp):
CACCATCGACACACGCTGGTCGATCACCATCGACACACGCTGGGCCCTAGTGCGGGCGGTTGCCT
CGATCACCATCGGCACACGCTAGGCCCTGGTGCGGGAGGTTACCTCGAGCACCAACGGCACACGC
TGGGCCCTGGTGCAGGCGGTTGCCTTGAACACCATCGACACACGCTGGTCGAT
Found at i:10492 original size:23 final size:23
Alignment explanation
Indices: 10462--10506 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
10452 CTGGTGCGGG
*
10462 CGGTTGCCTCGATCACCATCGGA
1 CGGTTGCCTCGAGCACCATCGGA
10485 CGGTTGCCTCGAGCACCATCGG
1 CGGTTGCCTCGAGCACCATCGG
10507 CACATGCTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.16, C:0.36, G:0.29, T:0.20
Consensus pattern (23 bp):
CGGTTGCCTCGAGCACCATCGGA
Found at i:10532 original size:68 final size:68
Alignment explanation
Indices: 10417--10550 Score: 214
Period size: 68 Copynumber: 2.0 Consensus size: 68
10407 CTGGTGCAGG
* * * *
10417 CGGTTGCCTTGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATC
1 CGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTACAGGCGGTTGCCTCGAGCACCATC
10482 GGA
66 GGA
* *
10485 CGGTTGCCTCGAGCACCATCGGCACATGCTGGGCCCTGGTACAGGCGGTTGCCTCGAGCACCATC
1 CGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTACAGGCGGTTGCCTCGAGCACCATC
10550 G
66 G
10551 ACACACGCTG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 60 1.00
ACGTcount: A:0.14, C:0.35, G:0.32, T:0.19
Consensus pattern (68 bp):
CGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTACAGGCGGTTGCCTCGAGCACCATC
GGA
Found at i:10549 original size:45 final size:45
Alignment explanation
Indices: 10485--10696 Score: 253
Period size: 45 Copynumber: 4.7 Consensus size: 45
10475 CACCATCGGA
* * *
10485 CGGTTGCCTCGAGCACCATCGGCACATGCTGGGCCCTGGTACAGG
1 CGGTTGCCTCGAGCACCATCGACACACGCTGGGCCCTGGTACGGG
*
10530 CGGTTGCCTCGAGCACCATCGACACACGCTGGGCCCTGGTGCGGG
1 CGGTTGCCTCGAGCACCATCGACACACGCTGGGCCCTGGTACGGG
* * * * * *
10575 CGATTGCCTCAAGCACCATCGATACACACTGAGCCTTGGTACGGG
1 CGGTTGCCTCGAGCACCATCGACACACGCTGGGCCCTGGTACGGG
* * ** *
10620 CGGTTGCCTCGAGCAACATCGACACACGCTGGGCCCTAGTGTGGA
1 CGGTTGCCTCGAGCACCATCGACACACGCTGGGCCCTGGTACGGG
* * * *
10665 CGGTTACCTCAAACACCATCGGCACACGCTGG
1 CGGTTGCCTCGAGCACCATCGACACACGCTGG
10697 TCGATCACCA
Statistics
Matches: 140, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 140 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.17
Consensus pattern (45 bp):
CGGTTGCCTCGAGCACCATCGACACACGCTGGGCCCTGGTACGGG
Found at i:10571 original size:113 final size:113
Alignment explanation
Indices: 10373--10595 Score: 365
Period size: 113 Copynumber: 2.0 Consensus size: 113
10363 TGGTGCGGGA
* *
10373 GGTTGCCTCGAGCACCAACGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCTTGACCACCATCG
1 GGTTGCCTCGAGCACCAACGGCACACGCTGGGCCCTGGTACAGGCGGTTGCCTCGACCACCATCG
* * * *
10438 GCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGAC
66 ACACACGCTGGGCCCTGGTGCGGGCGATTGCCTCAAGCACCATCGGAC
* * *
10486 GGTTGCCTCGAGCACCATCGGCACATGCTGGGCCCTGGTACAGGCGGTTGCCTCGAGCACCATCG
1 GGTTGCCTCGAGCACCAACGGCACACGCTGGGCCCTGGTACAGGCGGTTGCCTCGACCACCATCG
10551 ACACACGCTGGGCCCTGGTGCGGGCGATTGCCTCAAGCACCATCG
66 ACACACGCTGGGCCCTGGTGCGGGCGATTGCCTCAAGCACCATCG
10596 ATACACACTG
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
113 101 1.00
ACGTcount: A:0.15, C:0.35, G:0.33, T:0.17
Consensus pattern (113 bp):
GGTTGCCTCGAGCACCAACGGCACACGCTGGGCCCTGGTACAGGCGGTTGCCTCGACCACCATCG
ACACACGCTGGGCCCTGGTGCGGGCGATTGCCTCAAGCACCATCGGAC
Found at i:10620 original size:158 final size:158
Alignment explanation
Indices: 10327--10640 Score: 439
Period size: 158 Copynumber: 2.0 Consensus size: 158
10317 CTAGTGCGGG
* * *
10327 CGGTTGCCTCGATCACCATCGGCACACGCTAGGCCCTGGTGCGGGAGGTTGCCTCGAGCACCAAC
1 CGGTTGCCTCGAGCACCATCGGCACACGCTAGGCCCTGGTACAGGAGGTTGCCTCGAGCACCAAC
* * ** * * *
10392 GGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCTTGACCACCATCGGCACACGCTGGGCCCTGGT
66 GACACACGCTGGGCCCTGGTGCAGGCGATTGCCTCAACCACCATCGACACACACTGAGCCCTGGT
* * *
10457 GCGGGCGGTTGCCTCGATCACCATCGGA
131 ACGGGCGGTTGCCTCGAGCAACATCGGA
* * * *
10485 CGGTTGCCTCGAGCACCATCGGCACATGCTGGGCCCTGGTACAGGCGGTTGCCTCGAGCACCATC
1 CGGTTGCCTCGAGCACCATCGGCACACGCTAGGCCCTGGTACAGGAGGTTGCCTCGAGCACCAAC
* * * *
10550 GACACACGCTGGGCCCTGGTGCGGGCGATTGCCTCAAGCACCATCGATACACACTGAGCCTTGGT
66 GACACACGCTGGGCCCTGGTGCAGGCGATTGCCTCAACCACCATCGACACACACTGAGCCCTGGT
10615 ACGGGCGGTTGCCTCGAGCAACATCG
131 ACGGGCGGTTGCCTCGAGCAACATCG
10641 ACACACGCTG
Statistics
Matches: 135, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
158 135 1.00
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.18
Consensus pattern (158 bp):
CGGTTGCCTCGAGCACCATCGGCACACGCTAGGCCCTGGTACAGGAGGTTGCCTCGAGCACCAAC
GACACACGCTGGGCCCTGGTGCAGGCGATTGCCTCAACCACCATCGACACACACTGAGCCCTGGT
ACGGGCGGTTGCCTCGAGCAACATCGGA
Found at i:10648 original size:203 final size:204
Alignment explanation
Indices: 10266--10888 Score: 820
Period size: 203 Copynumber: 3.1 Consensus size: 204
10256 CACACGCTGG
* * * * * *
10266 TCGATCACCATCGACACACGCTGGTCGATCACCATCGACACACGTTGGGCCCTAGTGCGGGCGGT
1 TCGAACACCATCGGCACACGCTGCTCGATCACCATCGGCACACGCTGGGCCCTAGTGCAGGCGGT
* * *
10331 TGCCTCGATCACCATCGGCACACGCTAGGCCCTGGTGCGGGAGGTTGCCTCGAGCACCAACGGCA
66 TGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGAGGTTGCCTCGAGCACCATCGACA
* *
10396 CACGCTGGGCCCTGGTGCAGGCGGTTGCCTTGACCACCATCGGCACACGCTGGGCCCTGGTGCGG
131 CACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGCGG
10461 GCGGTTGCC
196 GCGGTTGCC
* * * * * * *
10470 TCGATCACCATCGG-AC-GGTTGCCTCGAGCACCATCGGCACATGCTGGGCCCTGGTACAGGCGG
1 TCGAACACCATCGGCACACGCTG-CTCGATCACCATCGGCACACGCTGGGCCCTAGTGCAGGCGG
* * * * * *
10533 TTGCCTCGAGCACCATCGACACACGCTGGGCCCTGGTGCGGGCGATTGCCTCAAGCACCATCGAT
65 TTGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGAGGTTGCCTCGAGCACCATCGAC
* * * * * * * * *
10598 ACACACTGAGCCTTGGTACGGGCGGTTGCCTCGAGCAACATCGACACACGCTGGGCCCTAGTGTG
130 ACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGCG
* *
10663 GACGGTTACC
195 GGCGGTTGCC
* * *
10673 TCAAACACCATCGGCACACGCTGGTCGATCACCATCGGCACACGCTGGGCCCTAGTGCAGGTGGT
1 TCGAACACCATCGGCACACGCTGCTCGATCACCATCGGCACACGCTGGGCCCTAGTGCAGGCGGT
*
10738 TGCCTCGATCACCATCGGCACACGCTGCGCCCTGGTGCGGGAGGTTGCCTCGAGCACCATCGACA
66 TGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGAGGTTGCCTCGAGCACCATCGACA
* * * *
10803 CACGTTGGGCCCTGGTGCAGGTGGTTGCTTCGAG-ACCATCGGCACACGTTGGGCCCTGGTGCGG
131 CACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGCGG
*
10867 GCAGTTGCC
196 GCGGTTGCC
10876 TCGAACACCATCG
1 TCGAACACCATCG
10889 ACATACACTG
Statistics
Matches: 349, Mismatches: 67, Indels: 7
0.83 0.16 0.02
Matches are distributed among these distances:
202 3 0.01
203 208 0.60
204 135 0.39
205 3 0.01
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.18
Consensus pattern (204 bp):
TCGAACACCATCGGCACACGCTGCTCGATCACCATCGGCACACGCTGGGCCCTAGTGCAGGCGGT
TGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGAGGTTGCCTCGAGCACCATCGACA
CACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGCGG
GCGGTTGCC
Found at i:10751 original size:69 final size:69
Alignment explanation
Indices: 10636--10764 Score: 188
Period size: 69 Copynumber: 1.9 Consensus size: 69
10626 CCTCGAGCAA
*
10636 CATCGACACACGCTGGGCCCTAGTGTGGACGGTTACCTCAAACACCATCGGCACACGCTGGTCGA
1 CATCGACACACGCTGGGCCCTAGTGAGGACGGTTACCTCAAACACCATCGGCACACGCTGGTCGA
10701 TCAC
66 TCAC
* * * * *
10705 CATCGGCACACGCTGGGCCCTAGTGCAGG-TGGTTGCCTCGATCACCATCGGCACACGCTG
1 CATCGACACACGCTGGGCCCTAGTG-AGGACGGTTACCTCAAACACCATCGGCACACGCTG
10765 CGCCCTGGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
69 51 0.96
70 2 0.04
ACGTcount: A:0.20, C:0.35, G:0.27, T:0.18
Consensus pattern (69 bp):
CATCGACACACGCTGGGCCCTAGTGAGGACGGTTACCTCAAACACCATCGGCACACGCTGGTCGA
TCAC
Found at i:10761 original size:45 final size:45
Alignment explanation
Indices: 10697--11251 Score: 580
Period size: 45 Copynumber: 12.4 Consensus size: 45
10687 CACACGCTGG
* * *
10697 TCGATCACCATCGGCACACGCTGGGCCCTAGTGCAGGTGGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
* * * *
10742 TCGATCACCATCGGCACACGCTGCGCCCTGGTGCGGGAGGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
* * * *
10787 TCGAGCACCATCGACACACGTTGGGCCCTGGTGCAGGTGGTTGCT
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
* * *
10832 TCGAG-ACCATCGGCACACGTTGGGCCCTGGTGCGGGCAGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
* * * *
10876 TCGAACACCATCGACATACACTGGGCCCTGGTGCAGGCGGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
* * *
10921 TCGAGCACCATCGACACACGCTGGGCCCTGATGTG-A-GCCGTTTCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTG--GTGCAGGCGGTTGCC
* * *
10966 TCGAGCACCATCGACACACGCTGGGCCTTGGTACAGGCGGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
* * * ** * *
11011 TCGAGCACCATCAGCACATGCTGGGCCTTGGTGTGGGCTGTTACC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
* * * *
11056 TTGAACACCATCGGCACATGCTGGGCCCTGGTGCGGGCGGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
* * *
11101 TCTAGCACCATCGGCACACGCTGGGCCCTGGTG-TGAGCGGTTCCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAG-GCGGTTGCC
* * * * * *
11146 TTGATCACTATCAGCACACGCTGGGCCCCGGTGCAGGCAGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
*** * * * *
11191 TCGAATGCCATTGGCACACGTTGGGTCCC-GGTGCGGGTGGTTGCC
1 TCGAGCACCATCGGCACACGCTGGG-CCCTGGTGCAGGCGGTTGCC
11236 TCGAGCACCATCGGCA
1 TCGAGCACCATCGGCA
11252 TAAGCCGGCC
Statistics
Matches: 425, Mismatches: 77, Indels: 16
0.82 0.15 0.03
Matches are distributed among these distances:
43 2 0.00
44 40 0.09
45 375 0.88
46 5 0.01
47 3 0.01
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20
Consensus pattern (45 bp):
TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCC
Found at i:18875 original size:173 final size:170
Alignment explanation
Indices: 18524--18922 Score: 439
Period size: 173 Copynumber: 2.3 Consensus size: 170
18514 TCGGTCTGAT
** *
18524 CTTAGACTGGGAATGAACTCTTTATTCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * *
18589 CGATCAGAGGGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCTGTCGAT
66 CGACCAGAGGAGCATAACGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCTGTCGAT
* ** *
18654 CCCGCTGCCAGTCTAGCTGCCACAACCTTCAGTCCGGTTGGGG
131 CCCGCTGCCAGTCGAGCTGCCACAA-CTGAACTCCGGTT--GG
* * * * *
18697 CTTAGACAT-GGAATGAACTCCGTATGCGTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
*
18761 CCGACCGGAGGAGCATAACGCGCAAGCCGGGGATCGACCC-AGTCCCCCCTGCGTGCTGCTGTCG
65 CCGACCAGAGGAGCATAACGCGCAAGCCGGGGATCGACCCGA-TCCCCCCTGCGTGCTGCTGTCG
* * * *** *
18825 ATCCCGCTGTCGGTTCGATCTTAGACTGGGAA-TGAACT-CTGTAT-G
129 ATCCCGCTGCCAG-TCGAGC-T-G-C-CACAACTGAACTCCGGT-TGG
*
18870 CTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
18923 AGAGCGTTGA
Statistics
Matches: 189, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
172 2 0.01
173 170 0.90
174 5 0.03
175 4 0.02
176 5 0.03
177 1 0.01
178 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGACCAGAGGAGCATAACGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCTGTCGAT
CCCGCTGCCAGTCGAGCTGCCACAACTGAACTCCGGTTGG
Found at i:18880 original size:26 final size:26
Alignment explanation
Indices: 18844--18896 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18834 TCGGTTCGAT
*
18844 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18896 C
1 C
18897 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19874 original size:45 final size:45
Alignment explanation
Indices: 19825--21173 Score: 677
Period size: 45 Copynumber: 29.6 Consensus size: 45
19815 CGGGCACTTA
* ** * * *
19825 CCTCGATCGCCATCGGCACAAACTGGGCCCTGGTGTGGGCGATCG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * *
19870 CCTCGATCACCATCGGCACATGCTGGGCCTTGGTGTGGGCGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * * * **
19915 CCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCGGGTAGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * *
19960 CCTCAACCACCATCGGCACATGCTGGGCCCTGGTGCGGGCTGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * * * * *
20005 CATCGAGCACCATCGACACACGCTGGGCCCTGGTGAGGGCAGCTA
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * ** * * * * *
20050 CCTCGACCACCATTGAAAGAGGAT-GGCCTCTGGTGTGGGTGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCC-CTGGTGCGGGCGGTTG
* * * * *
20095 CCTCGAGCACCATCGGCATACGCTAGGCCCTGATGCGGGCGATTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* *
20140 CCTCGAGCACCATCAGCACACGCTGGGCCCTGGTGCGGGCGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * *
20185 CCTCGATCACCATCGGCACATGCTGGGCCCTGGTGCAGACGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * *
20230 CCTCGATCACTATCGGCACACACTAGGCCCTAGTGCGGGCGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * * * ** * * *
20275 CCTCAAGCACCATCGGCAAATGCTGCGCCCTGGTATGAGCGATTT
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* *
20320 CCTCGATCACCATCGGCACACGCTGGGCCCTAGTGTGGGCGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * * * *** ** **
20365 CCTCGAACACCATTGGTATATGCTGGGTCCTCACCAT-CGACACACATTG
1 CCTCGATCACCATCGGCACACGCTGGG-CC-C-TGGTGCG-GGC-GGTTG
* * * * * * * * *
20414 CGCCCTAGTGCAGGCGGTTGCCTCGAC-CAC-CATCGGTACAC-GTTG-GGCCCTGGGGTG
1 C-CTCGA-T-CA--C-----CATCGGCACACGC-T-GG-GCCCTGGTGCGG-GC--GGTTG
* * * * * ** **
20471 -GTTG-TCTCGATC-AC-CATCG--GCACACGCTAGGCCCTGGTGCGGGCGGTTG
1 CCTCGATCACCATCGGCACA-CGCTGGGC-C-CT-GGTGC-GG-GCGG----TTG
* * *
20520 CCTCGAGCACCATTGGCACACGCTGGGCCCTGGTGCGAGCGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * * * *
20565 CCTCGAGCACCATCGCCACATGCTGGGCCCTAGTGTGGGCAGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * **
20610 CCTCGAGCACCATTGGCACACACTGGGCCCTGGTGCGAACGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * *** **
20655 CCTCGAACACCATCGGCACATGCTGGTCGATCACCATCGACACACGCTGG--G
1 CCTCGATCACCATCGGCACACGCTGG--G--C-CC-T-GGTGCGGGC-GGTTG
* * * * ** * ** *
20706 CC-CTGGT-GCGAGCGGTTGC-C-TTGATCACC--AT-C-GGCGGTTG
1 CCTC-GATCACCATCGG-CACACGCTGGGC-CCTGGTGCGGGCGGTTG
* * * * *
20746 CCTCGAGCACCATCGACAAACGCTGGGCCCTGGTGTGGGTGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * * *
20791 CTTCGAGCACCATCGGCACACGCTAGGCCCTGGTGCTGGTGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* *
20836 CCTCG-TGCACCATCGGCACACGCTGGGCCCTGGTGTGGGCCG-T-
1 CCTCGAT-CACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
*
20879 -CTCG-TGCACCATCGAG-ACACGCTGGGCCCTGGTGCGGGCCGTTG
1 CCTCGAT-CACCATCG-GCACACGCTGGGCCCTGGTGCGGGCGGTTG
** *
20923 CCTCG-TGCACCATCGATACACGCTGGGCCCTGGTGCGGGCGATTG
1 CCTCGAT-CACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * *
20968 CCTCGAGCACCATCGGCACACACTGGGCCCTGGTGCGGGCGGTTA
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * * *
21013 CCTCGAGCACCATCGGCACACGTTGGGCCCTGGTACGGGTGGTTT
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * * *
21058 CCTCGATCACCATCGACACACGCTGGGCCTTGGTACGGGCAGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* * *
21103 CCTCGAGCACCATCGGCACACACTGGGCCCTGGTGGGGGCGGTTG
1 CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
*
21148 CCTCGAACACCATCGGCACACGCTGG
1 CCTCGATCACCATCGGCACACGCTGG
21174 TCGATCACCA
Statistics
Matches: 984, Mismatches: 252, Indels: 136
0.72 0.18 0.10
Matches are distributed among these distances:
38 2 0.00
39 2 0.00
40 5 0.01
41 11 0.01
42 42 0.04
43 4 0.00
44 9 0.01
45 819 0.83
46 6 0.01
47 6 0.01
48 2 0.00
49 13 0.01
50 15 0.02
51 13 0.01
52 11 0.01
53 6 0.01
54 3 0.00
56 3 0.00
57 3 0.00
58 3 0.00
59 6 0.01
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (45 bp):
CCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
Found at i:20592 original size:245 final size:248
Alignment explanation
Indices: 20166--20625 Score: 665
Period size: 245 Copynumber: 1.9 Consensus size: 248
20156 CACACGCTGG
* * * *
20166 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACATGCTGGGCCCTGGTGCAGACGGTTGC
1 GCCCTAGTGCAGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTG-AGACGGTTGC
* *
20231 CTCGATCACTATCGGCACACACTAGGCCCTAGTGCGGGCGGTTGCCTCAAGCACCATCGGCAAAT
65 CTCGATCACCATCGGCACACACTAGGCCCTAGTGCGGGCGGTTGCCTCAAGCACCATCGGCAAAC
* * * * *
20296 GCTGCGCCCTGGTATGAGCGATTTCCTCGATCACCATCGGCACACGCTGGGCCCTAGTGTGGGCG
130 GCTGCGCCCTGGTACGAGCGATTGCCTCGAGCACCATCGCCACACGCTGGGCCCTAGTGTGGGCA
20361 GTTGCCTCGAACACCATTGGTATATGCTGGGTCCTCACCATCGACACACATTGC
195 GTTGCCTCGAACACCATTGGTATATGCTGGGTCCTCACCATCGACACACATTGC
* * * *
20415 GCCCTAGTGCAGGCGGTTGCCTCGACCACCATCGGTACACGTTGGGCCCTGG-G-G-TGGTTGTC
1 GCCCTAGTGCAGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGAGACGGTTGCC
* * * * *
20477 TCGATCACCATCGGCACACGCTAGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATTGGCACACG
66 TCGATCACCATCGGCACACACTAGGCCCTAGTGCGGGCGGTTGCCTCAAGCACCATCGGCAAACG
* * * *
20542 CTGGGCCCTGGTGCGAGCGGTTGCCTCGAGCACCATCGCCACATGCTGGGCCCTAGTGTGGGCAG
131 CTGCGCCCTGGTACGAGCGATTGCCTCGAGCACCATCGCCACACGCTGGGCCCTAGTGTGGGCAG
*
20607 TTGCCTCGAGCACCATTGG
196 TTGCCTCGAACACCATTGG
20626 CACACACTGG
Statistics
Matches: 186, Mismatches: 25, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
245 138 0.74
246 1 0.01
248 1 0.01
249 46 0.25
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.21
Consensus pattern (248 bp):
GCCCTAGTGCAGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGAGACGGTTGCC
TCGATCACCATCGGCACACACTAGGCCCTAGTGCGGGCGGTTGCCTCAAGCACCATCGGCAAACG
CTGCGCCCTGGTACGAGCGATTGCCTCGAGCACCATCGCCACACGCTGGGCCCTAGTGTGGGCAG
TTGCCTCGAACACCATTGGTATATGCTGGGTCCTCACCATCGACACACATTGC
Found at i:20689 original size:24 final size:24
Alignment explanation
Indices: 20657--20704 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
20647 AACGGTTGCC
* *
20657 TCGAACACCATCGGCACATGCTGG
1 TCGAACACCATCGACACACGCTGG
*
20681 TCGATCACCATCGACACACGCTGG
1 TCGAACACCATCGACACACGCTGG
20705 GCCCTGGTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.25, C:0.35, G:0.23, T:0.17
Consensus pattern (24 bp):
TCGAACACCATCGACACACGCTGG
Found at i:20735 original size:69 final size:67
Alignment explanation
Indices: 20608--20810 Score: 228
Period size: 69 Copynumber: 3.0 Consensus size: 67
20598 TGTGGGCAGT
* * * * *
20608 TGCCTCGAGCACCATTGGCACACACTGGGCCCTGGTGCGAACGGTTGCCTCGAACACCATCGGCA
1 TGCCTCGAGCACCATCGACACACGCTGGGCCCTGGTGCGAGCGGTTGCCTTGAACACCATCGGCA
20673 CA
66 CA
* * *
20675 TGCTGGTCGATCACCATCGACACACGCTGGGCCCTGGTGCGAGCGGTTGCCTTGATCACCATCGG
1 TGC--CTCGAGCACCATCGACACACGCTGGGCCCTGGTGCGAGCGGTTGCCTTGAACACCATCGG
***
20740 CGGT
64 CACA
* * * * *
20744 TGCCTCGAGCACCATCGACAAACGCTGGGCCCTGGTGTGGGTGGTTG-CTTCGAGCACCATCGGC
1 TGCCTCGAGCACCATCGACACACGCTGGGCCCTGGTGCGAGCGGTTGCCTT-GAACACCATCGGC
20808 ACA
65 ACA
20811 CGCTAGGCCC
Statistics
Matches: 112, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
66 3 0.03
67 53 0.47
69 56 0.50
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (67 bp):
TGCCTCGAGCACCATCGACACACGCTGGGCCCTGGTGCGAGCGGTTGCCTTGAACACCATCGGCA
CA
Found at i:20745 original size:22 final size:22
Alignment explanation
Indices: 20717--20760 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
20707 CCTGGTGCGA
* *
20717 GCGGTTGCCTTGATCACCATCG
1 GCGGTTGCCTCGAGCACCATCG
20739 GCGGTTGCCTCGAGCACCATCG
1 GCGGTTGCCTCGAGCACCATCG
20761 ACAAACGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.14, C:0.34, G:0.30, T:0.23
Consensus pattern (22 bp):
GCGGTTGCCTCGAGCACCATCG
Found at i:21182 original size:24 final size:24
Alignment explanation
Indices: 21150--21197 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
21140 GGCGGTTGCC
*
21150 TCGAACACCATCGGCACACGCTGG
1 TCGAACACCATCAGCACACGCTGG
*
21174 TCGATCACCATCAGCACACGCTGG
1 TCGAACACCATCAGCACACGCTGG
21198 GTCCTGGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.38, G:0.23, T:0.15
Consensus pattern (24 bp):
TCGAACACCATCAGCACACGCTGG
Found at i:21231 original size:69 final size:70
Alignment explanation
Indices: 21105--21243 Score: 192
Period size: 69 Copynumber: 2.0 Consensus size: 70
21095 GGCAGTTGCC
*
21105 TCGAGCACCATCGGCACACACTGGGCCCTGGTGGGGGCGGTTGCCTCGAACACCATCGGC-ACAC
1 TCGAGCACCATCAGCACACACTGGGCCCTGGTGGGGGCGGTTGCCTCGAACACCATCGGCAACAC
21169 GCTGG
66 GCTGG
* * * * * *
21174 TCGATCACCATCAGCACACGCTGGGTCCTGGTGTGGGCGGTTGGCCTCTAGCA-CATCGGCAACA
1 TCGAGCACCATCAGCACACACTGGGCCCTGGTGGGGGCGGTT-GCCTCGAACACCATCGGCAACA
21238 CGCTGG
65 CGCTGG
21244 GCCTAGTGTG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
69 44 0.72
70 17 0.28
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.17
Consensus pattern (70 bp):
TCGAGCACCATCAGCACACACTGGGCCCTGGTGGGGGCGGTTGCCTCGAACACCATCGGCAACAC
GCTGG
Found at i:21261 original size:45 final size:44
Alignment explanation
Indices: 21174--21410 Score: 183
Period size: 45 Copynumber: 5.3 Consensus size: 44
21164 CACACGCTGG
* * *
21174 TCGATCACCATCAGCACACGCTGGGTCCTGGTGTGGGCGGTTGGCC
1 TCGAGCACCATCGGCACACGCTGGG-CCTAGTGTGGGCGGTT-GCC
* *
21220 TCTAGCA-CATCGGCAACACGCTGGGCCTAGTGTGGGTGGTTGCC
1 TCGAGCACCATCGGC-ACACGCTGGGCCTAGTGTGGGCGGTTGCC
* * ** *
21264 TCGATCACCATCGGCACACACTGGGCCCCGATGCGGGCGGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGCCTAG-TGTGGGCGGTTGCC
* * **
21309 TCGAACACCATCGGCACACACTGGGCCCCG-GTACGGGCGG-TGCC
1 TCGAGCACCATCGGCACACGCTGGGCCTAGTGT--GGGCGGTTGCC
* * * * * ** *
21353 TCGAGCACTATCGGTACAAGCCGGCCCTTAGTGTGGGCTCTTGCT
1 TCGAGCACCATCGGCACACGCTGGGCC-TAGTGTGGGCGGTTGCC
*
21398 TCGACCACCATCG
1 TCGAGCACCATCG
21411 ACAAAAGATG
Statistics
Matches: 155, Mismatches: 28, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
43 1 0.01
44 48 0.31
45 89 0.57
46 17 0.11
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.19
Consensus pattern (44 bp):
TCGAGCACCATCGGCACACGCTGGGCCTAGTGTGGGCGGTTGCC
Found at i:21261 original size:114 final size:114
Alignment explanation
Indices: 21060--21287 Score: 302
Period size: 114 Copynumber: 2.0 Consensus size: 114
21050 GGTGGTTTCC
21060 TCGATCACCATCGACACACGCTGGGCCTTGGTACGGGCAGTTGCCTCGAGCACCATCGGCACACA
1 TCGATCACCATCGACACACGCTGGGCCTTGGTACGGGCAGTTGCCTCGAGCACCATCGGCACACA
* *
21125 CTGGGCCCTGGTGGGGGCGGTTGCCTCGAACACCATCGGCACACGCTGG
66 CTGGGCCCTAGTGGGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
** * *
21174 TCGATCACCATC-AGCACACGCTGGGTCC-TGGTGTGGGCGGTTGGCCTCTAGCA-CATCGGCAA
1 TCGATCACCATCGA-CACACGCTGGG-CCTTGGTACGGGCAGTT-GCCTCGAGCACCATCGGC-A
* * * *
21236 CACGCTGGG-CCTAGTGTGGGTGGTTGCCTCGATCACCATCGGCACACACTGG
62 CACACTGGGCCCTAGTGGGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
21288 GCCCCGATGC
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
113 1 0.01
114 79 0.79
115 20 0.20
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (114 bp):
TCGATCACCATCGACACACGCTGGGCCTTGGTACGGGCAGTTGCCTCGAGCACCATCGGCACACA
CTGGGCCCTAGTGGGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
Found at i:21325 original size:204 final size:203
Alignment explanation
Indices: 20970--21366 Score: 528
Period size: 204 Copynumber: 2.0 Consensus size: 203
20960 GGCGATTGCC
*
20970 TCGAGCACCATCGGCACACACTGGGCCCTGGTGCGGGCGGTTACCTCGAGCACCATCGGCACACG
1 TCGAGCACCATCAGCACACACTGGGCCCTGGTGCGGGCGGTTACCTCGAGCACCATCGGCACACG
* * * * ** *
21035 TTGGGCCCTGGTACGGGTGGTTTCCTCGATCACCATCGACACACGCTGGGCCTTGGTACGGGCAG
66 CTGGGCCCTAGTACGGGTGGTTGCCTCGATCACCATCGACACACACTGGGCCCCGATACGGGCAG
* * **
21100 TTGCCTCGAGCACCATCGGCACACACTGGGCCCTGGTGGGGGCGGTTGCCTCGAACACCATCGGC
131 TTGCCTCGAACACCATCGGCACACACTGGGCCCCGGTACGGGCGG-TGCCTCGAACACCATCGGC
21165 ACACGCTGG
195 ACACGCTGG
* * * * * *
21174 TCGATCACCATCAGCACACGCTGGGTCCTGGTGTGGGCGGTTGGCCTCTAGCA-CATCGGCAACA
1 TCGAGCACCATCAGCACACACTGGGCCCTGGTGCGGGCGGTT-ACCTCGAGCACCATCGGC-ACA
** * *
21238 CGCTGGG-CCTAGTGTGGGTGGTTGCCTCGATCACCATCGGCACACACTGGGCCCCGATGCGGGC
64 CGCTGGGCCCTAGTACGGGTGGTTGCCTCGATCACCATCGACACACACTGGGCCCCGATACGGGC
* * *
21302 GGTTGCCTCGAACACCATCGGCACACACTGGGCCCCGGTACGGGCGGTGCCTCGAGCACTATCGG
129 AGTTGCCTCGAACACCATCGGCACACACTGGGCCCCGGTACGGGCGGTGCCTCGAACACCATCGG
21367 TACAAGCCGG
Statistics
Matches: 166, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
203 16 0.10
204 133 0.80
205 17 0.10
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.18
Consensus pattern (203 bp):
TCGAGCACCATCAGCACACACTGGGCCCTGGTGCGGGCGGTTACCTCGAGCACCATCGGCACACG
CTGGGCCCTAGTACGGGTGGTTGCCTCGATCACCATCGACACACACTGGGCCCCGATACGGGCAG
TTGCCTCGAACACCATCGGCACACACTGGGCCCCGGTACGGGCGGTGCCTCGAACACCATCGGCA
CACGCTGG
Found at i:22736 original size:3 final size:3
Alignment explanation
Indices: 22730--22804 Score: 123
Period size: 3 Copynumber: 25.0 Consensus size: 3
22720 TAAATAATAA
*
22730 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
22778 ATC ATT ATC ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Done.