Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168347.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_569, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22773
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Found at i:2315 original size:26 final size:26
Alignment explanation
Indices: 2286--2338 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2276 CCGATCCAAT
2286 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
2312 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2338 C
1 C
2339 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2605 original size:22 final size:22
Alignment explanation
Indices: 2577--2621 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
2567 GTCGATCGAT
2577 AGGGTGGTAGGTGGGTTTAGGC
1 AGGGTGGTAGGTGGGTTTAGGC
2599 AGGGTGGTAGGTGGGTTTAGGC
1 AGGGTGGTAGGTGGGTTTAGGC
2621 A
1 A
2622 CATCTTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.16, C:0.04, G:0.53, T:0.27
Consensus pattern (22 bp):
AGGGTGGTAGGTGGGTTTAGGC
Found at i:2976 original size:917 final size:904
Alignment explanation
Indices: 494--12491 Score: 7525
Period size: 884 Copynumber: 13.5 Consensus size: 904
484 TCCTAGACTG
* * * * *
494 GGAATGAACTCCATAGGCTTAGATCTGGATAATGAAACTCCGTATG-CTAAGAGCGACCCACGAA
1 GGAATGAACTCCGTATGCTTAGA-CTGG-GAATG-AACTCCGTATGCCTAAG-TCAACCCACGAA
* * * * * *
558 ACGAGCGTGCGGAGTGCTCAGTCGGGCCCCAGAGGGGTAGGATGCAGTCAAGTCAAGGGGATCGA
62 ACGAGCATGCGG-GCGCTCA-ACCGG--CCAGAGGGGCAGGATGC-G-CAAG-C-CGGGGATCG-
* * * * *
623 TTGCGGAGTCCCCCCTGCAGTGCTGC-AATCCTGCTCACTCGTAACCCTCT-GTCTGGTCTGATC
118 GT-C-GA-TGCCCCCTACA-TGCTGCTGATCCTGCT-AC-CGCAACCCT-TGGTCTGGTCTGATC
* *
686 TTAGACTGGGAATGAACTCCGTA-G-CTAAGCCAACCGATCG-AACGAGCGGGC-GGCGGGCACT
176 TTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGAT-GAAACGAGCGAGCGGGCGGGCACT
* * *
747 ACGTCGGCCAGAGGAGGCGGGATGCGCAAGCCGTGGATCGATACGGTGGTA--------A----G
240 ACGCCGGCCAGA-GAGACGGGATGCG-AAGCCGT-GATCGATAGGGTGGTAGGTGTGGCAGGGTG
*** *
800 GT---T-GGTTTAGGCACATCTTCATA-TTCTGCTGCGCCAATGCC-CTTTTATGGCTTGTAAAT
302 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
859 TCATAC-ATTGT--CCTAAGCCTTCATGTGAAG-TTCATGGCAAG-CGACTACA-TTTCGATTTT
367 TCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT-CATTTTCTATTTT
* * * *
918 TCATGATTTTTGAAAACTTTTTACGGTTC-AGATTTTTTAAAA-TTTCTCAGAAGGATTTTTGGT
431 TCATGATTTGT-AAAACTTTTTACGGATCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGT
* * *
981 C-CCAAACTAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAA
495 CACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
1045 CTCGAAGTGTACAGAAGTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
560 CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
*
1110 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGAT
625 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
1175 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCA
690 GAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACC-
* *
1240 CCCCGCCTCCCAATCGTC-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGACGA
754 CCCCGCC-CCCAATCGCCAG-AACCCCAATGCCGCCGGTCAGGTTCTCTG-CGATGC-TCG-CGA
* * * *
1304 TGGTGCCACGAGCGAAAAAAAATGTGGCACTAGCACATGCCCGAGCCCAGCATGTGTACCCACAA
814 TGGTGCCCCG-GCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAA
* * * * *
1369 CCC-TCAGTCCGGTCCGATGTTACACT
878 CCCTTGATTCCGATCCAATCTTACACT
* * **
1395 AAGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACG
1 -GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * *
1460 AGCATGCGGGCGTTCAACCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGCCGAGTCCCAC
65 AGCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGA-TGCC-C
* * * * * * *
1525 CCTGCATGCTGCTGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC
128 CCTACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * *
1590 TTCGTATGCCTAAACTAACCGATGAAACGAGCCAGCGGGAGGGCACTACGCCAGCCAGAGAGGCC
193 TCCGTATGCCTAAGCTAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGA-GAC
* *
1655 GGTTATGC-AAGCCGTG---G--A---TCG-A----T---AGGGTGGTAGGTGGGTTTAGGCACA
257 GG-GATGCGAAGCCGTGATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCACA
*
1703 TCTTCAAATTTCTGCCATGCCAATGCCATTTTTATGGCCTTGT-AATTCCGATACAATGGTCCCC
321 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG-CTTGTAAATT-C-ATACAATGGTCCCC
** ** * * *
1767 TAAGCCTTCATGTGAAGTTTTTGTTGGCAAGACGACTTGTTTTCTATTTTTCAAGATTTTTGAAA
383 TAAGCCTTCATGTGAAG--TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGTAAAA
* * * *
1832 CTTTTTAC-GATTTGGGATTTTTTAAAAATTTTTTCAGAAGGATTTTTGG-CCCCAAACTTGGTA
446 CTTTTTACGGA-TCGAGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTA
*
1895 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAG
509 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
** * * *
1960 GATTTTGTGATGATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAGC
574 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
2025 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGC
639 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGC
*
2090 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCCGCCCCCAATCG
704 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGCCCCCAATCG
* * * *
2155 CCAGAACCCCAATGCCGCCGGTAAAGTTCTCTGGCGATGCTCCTGTGATGGTGCCCCAGGTGAAA
769 CCAGAACCCCAATGCCGCCGGTCAGGTTCTCT-GCGATGCT-C-GCGATGGTGCCCC-GGCGAAA
* * * * *
2220 AAAAATATGGTACCAACAAATGCCCGAGCCCATCATGTGCACCTC-TAACCCTTGA-TCCGATCC
830 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC-CATAACCCTTGATTCCGATCC
2283 AATCTTACACT
894 AATCTTACACT
* * *
2294 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCAATGAAAT
1 -GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-ACGAAAC
** * * * *
2359 GAGTGTGCGGGCGCTCAGCCGGCCAGTGGGGCAGGATGCGTAAACCGGGGATCGGTCGGATGCCC
64 GAGCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-GATGCCC
* ** * * *
2424 CCTACGTGCTGCCAATCTTGCTACCGTAACCCTTGGTCTGGTCTAATCTTAGACTGGGAATGAAC
128 CCTACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * * *
2489 TCCATATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGAGAACTATGTCGGCCATAGAGACG
193 TCCGTATGCCTAAGCTAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACG
2554 GGATGCGGAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCAGGGTGGTAGGTGGGTTTAG
258 GGATGC-GAAGCCGT-GATCGATAGGGTGGTAGGT--G--T-GGCAGGGTGGTAGGTGGGTTTAG
* *
2619 GCACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATGCATACAATGGTCC
316 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
2684 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTAATTTTCACGATTTGCAAAA
381 CCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGTAAAA
*** *
2749 CTTTTTACGGATCGAGATTTTTTAAAAATTTTTTTTTAAGGAGTTTTGG-CACTAAACTTGGTAG
446 CTTTTTACGGATCGAGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTAG
* * * * *
2813 ATGTAATCTTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACATG
510 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* *
2878 ATTTTGTGACCATTTGAAAAAAGTGACCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACC
575 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
* *
2943 TGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATG-TGCGATAGGGGGC
640 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGC-ATAGGGGGC
* *
3007 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGAGCGCACACCCCCCACCCCCCAATC
704 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCC-GCCCCCAATC
* * *
3072 GTCAGAACCCCAATACCGCTGGTCAGGTTCT-T----TG---GCGATGGTGCCCCGGGCG-AAAA
768 GCCAGAACCCCAATGCCGCCGGTCAGGTTCTCTGCGATGCTCGCGATGGTGCCCC-GGCGAAAAA
* * *
3128 AAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGACTGGTCTGATC
832 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAA--C-C---C---T-TGA--
* *
3193 TTACACTGGGAATGAACTCTGTATTCTTAGACT
885 TT-C-C---G-AT---C-C---AATCTTACACT
* * *
3226 GGAATGAACTTCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGA
1 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * *
3291 GCATGCGGGCACTCAACCGGCCAGAGGGCCAGGATGCGCAAGCCGGGGATCAGTCGA-GTCCCCT
66 GCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGATG-CCCC-
* * * * *
3355 TCTACATGTTGCTGATCCTACTACCGGAACCCTTGGTGTGGTCTGATCTTAGATTGGGAATGAAC
129 -CTACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * *
3420 TCCGTATGCCTAAGCTAACCGATGAAACGAGCGTGCGGGCGGGCACTACGCCGGCCAGGGAGGCG
193 TCCGTATGCCTAAGCTAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACG
*
3485 GGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTG-GGC----------------TTAGGCACA
258 GGATGCG-AAGCCGT-GATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCACA
* *
3533 TCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCCTAA
321 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAA
* * * * *
3598 GCCTTCATGTGAAGTTTCATGGCAAGACAACTC-TTTTATATTTTTCATAATTTTTGAAACTTTT
386 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGTAAAACTTTT
* * * *
3662 TACGGTTCGGGATTTTTTTAAATTATTTCAGAAGGAGTTTTGGTCA-CAAACTTGGTAGACGTGA
451 TACGGATCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTAGACGTGA
* *
3726 TCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
516 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
* * *
3791 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACA-TTCTAATGGCTACTTGTAGCAAACCTGTAA
581 TGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT-TAATGGCTACTGGCAGCAAACCTGTAA
* * * *
3855 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTAGAGGTTTGATGAGGGATATGGGGCCAATAT
645 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATAT
* * *
3920 AAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACATCCCCCCTCGCCCCCCAATCACC
710 AAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA--CCCCC-CG-CCCCCAATCGCC
* ** * * * * **
3985 GGAACCCCAATGATGTCGGTCAGGTTCTC--CTATGAT-G-G-T-GT-TCAGGGCGAAAAAAAAT
771 AGAACCCCAATGCCGCCGGTCAGGTTCTCTGCGATGCTCGCGATGGTGCCCCGGCGAAAAAAAAT
** * * * ** * *
4043 ACGGCA-CAGCACATGCTCGAGCCCAGCA-ATG-A-AC-T--CGGTCTGGTT----T--GATCTT
836 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCT-TGATTCCGATCCAATCTT
4095 ACACT
900 ACACT
* * *
4100 GGGAATGAACTCCATATACTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACG
1 -GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
*** * * * * * * *
4165 AATGTGCAGGCGCTCAACCAGTCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCT
65 AGCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-GATGCCC-
* * ** * **
4230 CCTACATGCT-ATCGATCCTGCTACCACAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAA
128 CCTACATGCTGCT-GATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAA
* * * * *
4294 CT-CGTATGCCTAAGCCT-ATCGATGAAACGATGC-AGGCAGTGTGGGCACTA-TCCAGCCAGAG
192 CTCCGTATGCCTAAG-CTAACCGATGAAACGA-GCGA-GC-GGGCGGGCACTACGCCGGCCAGAG
* * *
4355 AGTGCGGGATGCGCAAGCTGTG--C-A-A---TCGATA-G-GT--C----TGGTAGGGTGGGTTT
253 AG-ACGGGATGCG-AAGCCGTGATCGATAGGGT-GGTAGGTGTGGCAGGGTGGTA-GGTGGGTTT
* *
4405 AGCGCACATCTTCATATTTTTTGCCCATGCCAATTGTCATTTTTTATGGCCTTGTAAATTCAATA
314 AG-GCACATCTTCATA-TTTCTG-CCATGCCAA-TGCCA-TTTTTATGG-CTTGTAAATTC-ATA
* *
4470 CAATGGTCCCCTAAGCCTTCATGTGAAGCTTCATGGCAAGATGACTCATTTTCTATTTTTCATGA
372 CAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA
* * * * ** *
4535 TTTTTGAAACTTTTTAC-GATTCAAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTCAG-CCCCA
437 TTTGTAAAACTTTTTACGGA-TCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCACCA
* *** * * * * * * *** * * **
4598 TTTCAGCTAAAAACTCGAAGTG-TAC-AGGA-TTTTG-TGACCAT--TTGAAAAAAGTGA-C-CC
500 ----AACT---TGGTAGACGTGATCCTTGTATTTTTGTTG-GCATGCACAAAAAAATTCAGCTAA
* ** * * * ** * ** * * ** *
4655 CATTTCAGACACTTTA-ATGGCTACTG-GTAGCAAACCTG-TAAAA---T-CTCA-AAT-G-CTC
557 AAACTC-GA-AGTGTACA-GGATTTTGTG-A-C-CATTTGAAAAAAGTGTCCCCATTTTAGACAC
*** ** ** ** *** * *
4710 TTTAA-GG-GGGTGTG-AG---TTCTCG--AGGT-T-TGATG-T-GGGATAGGGGGCCAATATAA
616 TTTAATGGCTACTG-GCAGCAAACCT-GTAAAATCTCAAATGCTCTTTA-AGGGGG----TGTGA
** * *** ** * * * **** * *
4763 GGGC-C-AAGTACCA-GCACCCAT----CG-CACATCATGAGCGCACACCCCCCCGCACCC---C
674 GTTCTCGAGGTTTGATG-AGGCATAGGGGGCCA-AT-ATAAGGGC-CAAGTACCAGCACCCATTG
* * ** * * ** * *
4817 CA-ATC--G-CCGGA-ACCCCAATGCCACC---CGTCAGGTTCTCCGAGGATG-CTCCGG-CGAT
735 CACATCATGTGCGCACACCCC-CCGCCCCCAATCGCCA-GAAC-CCCA--ATGCCGCCGGTC-A-
* * * * ******* ** * *** *
4872 GGCATCGCGGGCAAAAAAAAATG-TGGAACCAGCACATGCCTGAGCCCAACATGT-GCACC--CA
793 GG-TTCTC-TGC-GATGCTCGCGATGGTGCC--C-C--GGC-GA-AAAAAAATGTGGCACCAGCA
** * * * * * * * * **
4933 CAACCTCCG-GGCC-G-GTCTG-A-TC-TTACACTGGGAAT--GA---AATCTGTATGCT
848 CATGC-CCGAGCCCAGCATGTGCACCCATAACCCT-TGATTCCGATCCAATCT-TACACT
* *
4982 --TA-G-ACT--G---G----------GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
1 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * * ** *
5028 GCATGCAGGCGCTCAGCCGACCAGAGGGGTAGGATGCACAAACTGGGGATTGACCG-GGTCCTCC
66 GCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGATG-CC-CC
* * * * * * * ** *
5092 CTGCGTGCTGCCGATCCTAG-TGCTGTAACCCTTGATCTGGTCCAATCTTAGACTTGGAATGAAC
129 CTACATGCTGCTGATCCT-GCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * ** * *
5156 TCCATATGCCTAAGCCAACCGATGAAACGAGC-AGGCAGGCGGGCGCTACTTCGGCCAGGGAGGC
193 TCCGTATGCCTAAGCTAACCGATGAAACGAGCGA-GCGGGCGGGCACTACGCCGGCCAGAGAGAC
* *
5220 GGGATGCGCAAG-C-----C-AT-GGATCG-A----T---AGGGTGGTAGGTGGGTTTAGGCACA
257 GGGATGCG-AAGCCGTGATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCACA
*
5269 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
321 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAA
* * * * *
5334 GCCTTCATCTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCA-CATTTTTTCAGAAGGA
386 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA-TTTGT-A-AA--A
* ** * * * ** * ** * * * **** * *
5398 -GTTTT--GGCCCCACACTTGGT-AGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
446 CTTTTTACGGATCGAGATTTTTTAAAAT-TTTTTC-AGAAGGAGTTTTGG--T-CAC--CAAACT
* * * * * * * * **
5459 TCAGCTAAAAACTTGA-AC-TGTACAGGATTTTG-TGACCATTG--GAAAAAAGTGTC--C--CC
504 T--GGT--AGACGTGATCCTTGT--A--TTTTTGTTG-GCA-TGCACAAAAAAAT-TCAGCTAAA
** * ** * * * * ** * * **
5515 ATTTC--A--G-ACA--CTTTAATGGCTACTGGCAGCAAA------CC--TGTA-AAATCTCAAA
558 AACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTTAGACA-CTTTAA
*** **** * ** * * * * * *
5564 T-GCT-CTTTAAG--GGGGTGTGAGTTCTC-GA-GGT-TTGATGAGGG-AT-AG-----G-GG--
621 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
** ** ** *
5612 -G-CCA-ATATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCACAC
686 TGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAC
* * *
5673 ACCCCCCGCCCGTGCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTC
751 ACCCCCCG--C---CCCCAATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCTG-CGATGCT-
* * * * *
5738 CGGCGATGGTGCCCCGGGTGAAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATCTACA
809 C-GCGATGGTGCCCC-GGCG-AAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
* * *
5803 CCCGTAACCC-T-ATGTCCGGTCCGATCTTACACT
871 CCCATAACCCTTGAT-TCCGATCCAATCTTACACT
**
5836 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATTACTAAGTCAACCCACGAAACG
1 -GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
** * * * * *
5901 AGTGTGCGGGTGCT-AAGTCGGCCAGAGGGGCAGGATGCGCAAGTCGGAGATCGGTCGAGTCCCC
65 AGCATGCGGGCGCTCAA-CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGA-T-GCC
* * ** * * * ** * * *
5965 CCCTACGTGCTACCAATCCTACTGCCACAACCCTCAGT-TCAGACTAATCTTAGACTGGGAATGA
127 CCCTACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCT-GGTCTGATCTTAGACTGGGAATGA
* * * * * * * * * * *
6029 ACTCCGTATGCGTAAGCCAACTGACGAAAAGAGCGGGCGGGCAGGCATTACACCAGCCAGAGAGG
191 ACTCCGTATGCCTAAGCTAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * *
6094 CGGGATGCTTAAG-C-----C-AT-GGATCG-A----T---AGGGTGGTAGGTGGGTTTAGGCAC
256 CGGGATGC-GAAGCCGTGATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCAC
*
6143 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
320 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTA
* * * * * * * *
6208 AGCCTTCATCTGAAGTTTCATGGCAAGACGGCTCGTTTTCTGTTTTTCA-CATTTTTTGAAACTC
385 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA-TTTGTAAAACTT
* * * * * *
6272 TTTACGGTTTGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGG-CCCCACACTTGGTAGACG
449 TTTACGGATCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTAGACG
* * * * *
6336 TGATCCTCGTATTTTTTTTTGGCATGCACAAAAAAATTGAGCTAAAAACTTGAACTGTACAGGAT
513 TGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* *
6401 TTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
577 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * *
6466 TAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAGGGATAGGGGGGTCT
642 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATA-GGGGG-CC
* * * * * *
6531 AATATAAGGGCCATGCACCAGCACCCATCGCACATCATGTGCTCGCACCCCCCACCCCCCAATCG
705 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCC-GCCCCCAATCG
** * ** * *
6596 -TGGAACCCTAATGTTGTCGGTCAGGTTCTCCAGACGGATGCTGCTGGCGATGGTGCCCGGACCC
769 CCAGAACCCCAATGCCGCCGGTCAGGTTCT-CTG-C-GATGCT-C--GCGATGGTG--C---CCC
* * * * * **
6660 GGCAAAAAAAATTATGACGGCATCAGTACATCCCTCGAGCCCTAGCATGTGGCACCCGCAA-CC-
823 GGCGAAAAAAA--ATG-TGGCACCAGCACATGCC-CGAGCCC-AGCATGT-GCACCCATAACCCT
* * **
6723 --AATCCGGTCC---GGT-C-C-
882 TGATTCCGATCCAATCTTACACT
* *
6738 -----G-A-T-C---T-CTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
1 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * ** * *
6791 GCGTGTGGGCGTTCAGCCGGCCAGAGGGGCAGGATGCATAAGCCGGGGATCGATCGAGTCCCCCC
66 GCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGA-TGCCCCC
* * * * *** ** *
6856 TTGCGTGCTG-TCGATCCTGCTGCCACAACCCTCCATCTGGTCCAATCTTAGACTGTGAATGAAC
130 -TACATGCTGCT-GATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * * *
6920 TCCGTATGCCTATGCCAACCGACGAAATGAGC-AGGCAGGCAGGCACTACGCCGGTCAGCA-AGG
193 TCCGTATGCCTAAGCTAACCGATGAAACGAGCGA-GCGGGCGGGCACTACGCCGGCCAG-AGAGA
* *
6983 CGGGATGCGCAAG-C-----C-AT-GGATCG-A----T---AGGGTGGTAGGTGGGTTTAGGCAC
256 CGGGATGCG-AAGCCGTGATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
7032 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTAAGGCTTATAAATTCATACGATGGTCCCTTA
320 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTA
* * * ** * *
7097 AGCCTTCATGTGAAGTTTCCTGGCAAGATGACTCATTTTTTATTTTTCACAATTTTTAAAACATT
385 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGTAAAACTTT
* *
7162 TTACGGTTCGAGATATTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGT
450 TTACGGATCGAGAT-TTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTAGACGT
* * * * *
7226 GATCCTTGTATTTTTTTTGGCAAGCACAAAAACAA-TAAGCTAAAAACTCAAAATGTACAGGATT
514 GATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAGGATT
* * ** * *
7290 TCGTGACCATTTG--AAAAGTGTCCTCATTGCAGACACTTTAATGGCTATTGGCAGCAAACCTAT
578 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
7353 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
643 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAAT
* * * * * * *
7418 ATAAGGGCCATGCACCAGCAACCATCGCACATCATGTGCTCACACCCCCCGCCCCCCCAATTGTC
708 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCG--CCCCCAATCGCC
* * * *
7483 GGAACCCCAATGTCGTCGGTCAGGTTCT-TCGACGATGCTCCGACGATGGTGCCCCGGGCAAAAA
771 AGAACCCCAATGCCGCCGGTCAGGTTCTCT-G-CGATGCT-CG-CGATGGTGCCCC-GGCGAAAA
** * * * **
7547 AAAATACGGCACCAGCACATACCTGAGCCCAGAATGTGCACCCGCAA--C-----T--G-T-C-A
831 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTTGATTCCGATCCAA
*
7600 --GT-C-C-
896 TCTTACACT
* * * * *
7604 -G---G---TCCG-AT-TTTACACTAGGAATGAACTCGGTATGCCTAAGTCAACACACGAAACGA
1 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * ** * * * *
7660 GCGTGCGAGCGCTCAGTCGGCCAGAGGGGCAGGATGTGAAAGTCGGGGATCGATCGA-GTCTCCC
66 GCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGATG-C-CCC
* * * * * * * * ***
7724 TCTGCGTGCTACCGATCCTGCTGCTGCAACTCTCGGTCCATTCTGAT-TTGAGACTGGGAATGAA
129 -CTACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTT-AGACTGGGAATGAA
* * ** * * * *
7788 CTCCGTATGCCTAAGCCAATCGACAAAACGAGCG-GACGAGCGGGCACTACGCCGACCAGAAAGG
192 CTCCGTATGCCTAAGCTAACCGATGAAACGAGCGAG-CGGGCGGGCACTACGCCGGCCAGAGAGA
*
7852 CGGGATGCGCAAGCCGTG---G--A---TCG-A----T---AGGGTGGTAGGTGGGTTTAGGCAC
256 CGGGATGCG-AAGCCGTGATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCAC
* *
7901 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTA
320 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTA
* * * * *
7966 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTCTTCACGATTTTTGAAACTTT
385 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGTAAAACTTT
* * * * * *
8031 TTATGGTTCGGGATTTTTTTAAAATTTTTTTAGATGGAGTTTTGG-CACCAAATTTGGTAGACGT
450 TTACGGATCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTAGACGT
* * * * *
8095 GATCCTTGTATTTTTGTTGTCAAGCATAAAAAAA--AAGCTAAAAACTCAAAGTGTACAGGATTT
514 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
** * *
8158 TGTGACCATTTG--AAAAGTGTTTCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTA
579 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
8221 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
644 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATA
* * *
8286 TAAGGGCCAAGTACCGGCACCCATCGCACATCATGCGCGCACACCCCTTCCGCCAACCCCAATCG
709 TAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCC--CCG-C--CCCCAATCG
*** * * * * *
8351 ATGGAACCCTAATGTCGCCAGTCAGGTTCTC--C-A-----GCGATGGTGCACCAGGCAAAAAAA
769 CCAGAACCCCAATGCCGCCGGTCAGGTTCTCTGCGATGCTCGCGATGGTGC-CCCGGC-GAAAAA
** * * * **
8408 AAATACGGCACCAGCACTTACCCTAGCCCAGCATGTGCACCGGTAACCC-----T-CG-------
832 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTTGATTCCGATCCAAT
*
8460 -GT-C-C-
897 CTTACACT
* * * *
8464 -----G-A-T-CG-AT-CTTACACTGGGAATGAACTCCGTATGCCAAAGTCAACACACGAAACAA
1 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * *
8519 GCGTGCGGGTGTTCAGCCGGCCAGAAGGGCAGGAT----ACG-CGGGGATCGG-CAGGGTCCCCC
66 GCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC--GATGCCCC
*** * * * * * * ** *
8578 CTGTGTGCTGCCGATCCTACTAACGTAACCCTCGATCCAG-CTTGATCTTAGACTAGGAATGAAC
129 CTACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCTGGTC-TGATCTTAGACTGGGAATGAAC
* * * * * * *
8642 TCCGTATGCCTAGGCCAACCGATGAAACAAACGGGCGGGCGGGCACTACGCCGGCTAGAGAGATG
193 TCCGTATGCCTAAGCTAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* *
8707 GGATGCGCAAGCCGTG---G--A---TCG-A----T---AGGGTGGTAGGTGGGTTTAGGCATAT
258 GGATGCG-AAGCCGTGATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCACAT
* * * * *
8756 CTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTCTAAATTCATAAAATGGTCCCTTAAC
322 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAG
* * * * *
8821 CCTTCATGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
387 CCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGTAAAACTTTTT
* * * *
8886 ACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCCAAACTTGGTAGATGTGA
452 ACGGATCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTAGACGTGA
* * *
8950 TCCTTGTATTTTTTTTGGCATGCACAAAAAAAGTT-AGCTAAAAATTCGAAGTGTATAGGATTTT
516 TCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* *
9014 GTGATCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
580 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
9079 AATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
645 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT----G--A---GG-C-ATA-
* * * ** *
9144 AGGGGCCAATATAAGGGCCAAATGCCAGCACCCATCCCACATCATGTGCACACACCCCCCGTCCG
698 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCG--C-
* * * * *
9209 TGCCCCAATCGCCGGAACCCCAATGCCGTCGGTCATGTTCTCCGGCAATGCTCCAGCGATGGTGC
760 --CCCCAATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCT-CTGCGATGCT-C-GCGATGGTGC
* * * * * **
9274 CCCGGGTGAAAAACAAATGTGACACCAGCACATGCCCGAGCCCAGCATCTACACTCGCAACCC-T
820 CCC-GGCGAAAAA-AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTT
* *
9338 -ATGTCCGGTCCGATCTTACACT
883 GAT-TCCGATCCAATCTTACACT
**
9360 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATTACTAAGTCAACCCACGAAACG
1 -GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * *
9425 AGCGTACGGGTGCT-AAGTCGGCAAGAGGGACAGGATGCGCAAGTCGGGGATCGG-CTGA-GTCC
65 AGCATGCGGGCGCTCAA-CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-GATG-CC
* * * * * * ** * ** *
9487 TCGCCTACGTGCTACCGATCCTACTGCCACAACCCTCAGT-TCGGACCAATCTTAGACTCGGAAT
127 -C-CCTACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCT-GGTCTGATCTTAGACTGGGAAT
* * * * * ** * * *
9551 GAACTCCGTATGCGTAAGCCAACTGATGAAACGAGCGGGCAGGCAAGCATTACACCAGCCAGAGA
189 GAACTCCGTATGCCTAAGCTAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGA
* * *
9616 GGCGGGATGCGCAAG-C-----C-AT-GGATCG-A----T---AGGGTGGTAGGTGGGTTTAGGC
254 GACGGGATGCG-AAGCCGTGATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGC
* *
9665 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCT
318 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
* * * * * *
9730 TAAGCCTTCATCTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTTATGATTTTTGAAACT
383 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGTAAAACT
* * * * ** * ***
9795 TTTTACGGTTCGGGATTTTTTTTAAATTTTTTCAGATGGAGTTTT-CACCCCAAACACAGTAGAC
448 TTTTACGGATCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTAGAC
* * * * * *
9859 ATGATCCTTCTATTTTTGTTGGCATGCATAAAAAAATTTAGCTTAAAACTCGAAGTGTATAGGAT
512 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* * *
9924 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACTTG
577 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * *
9989 TAAAATCTCAAATGCTCTTTAAGGGGGTTTAAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAA
642 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAA
* ** * *
10054 TATAAGGGCCAAGTACTAGCACCCACCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGTC
707 TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCC-GCCCCCAATCGCC
* * * * *
10119 GGAACCCTAATGCCGTCGGTCAGGTTCTC--CGA------CGACGGTGCCCTGAGCG-AAAAAAA
771 AGAACCCCAATGCCGCCGGTCAGGTTCTCTGCGATGCTCGCGATGGTGCCCCG-GCGAAAAAAAA
*** * * * * * * **
10175 TACAGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGTAACCC-TCAGTCTGGTCTGATCTT
835 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTTGATTCCGATCCAATCTT
*
10239 GCACT
900 ACACT
10244 GAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
1 G-GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
** * * * ** * *
10309 AGTGTGCGAGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCAGGTCCCCC
65 AGCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-GAT-GCCC
* * * * * ** * * ** * *
10374 CCTTCGTGCTACCGATCTTGCTGTCGTAACTCTCAGTCCGGTCTGATCTTAGATTGGGAATGAAC
128 CCTACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * *
10439 TCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGTGGCG
193 TCCGTATGCCTAAGCTAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACG
*
10504 GGATGCGCAAGCCGTG---G--A---TCG-A----T---AGGGTGGTAGGTGGGTTTAGGCACAT
258 GGATGCG-AAGCCGTGATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCACAT
*
10553 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
322 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAG
** * * *
10618 CCTTTTTGTGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTTCCATGATTT-TCAAAACTTTT
387 CCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGT-AAAACTTTT
* * * *
10682 TACTGTTCGAGATTTTTTTTAAAATTTTTTCAGAAGGAG-TTTGG-CCCCACACTTGGTAGACGT
451 TACGGATCGAGA--TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTAGACGT
*
10745 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTT
514 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
* **
10810 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACAAGTA
579 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
10875 AAATCTTAAATGCTCTTTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGAG-ATATGGGGCCAAT
644 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GCATAGGGGGCCAAT
* * * ** *
10939 ATAAGGGCCAAGTACCAGCACCCATTGCACATCTTGTGCGCACACCCCCCACCCCCTATTACCGG
708 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGCCCCCAATCGCCAG
** * *
11004 AACCCCAATGCCGCCGGTCAGGTTCTCTGATAATGCTCCGACGATGGTGCACCGATCGAAAAAAA
773 AACCCCAATGCCGCCGGTCAGGTTCTCTG-CGATGCT-CG-CGATGGTGCCCCG-GCGAAAAAAA
* * * ** * *
11069 ATGTGGCACTAGCACATGCCTGAGCCCAGCAGGTGCACCCGCAACCCACTG-TT-CGATCCGATC
834 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCC-TTGATTCCGATCCAATC
11132 TTACACT
898 TTACACT
**
11139 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACG
1 -GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * * *
11204 AGCGTGCGGGAGCTCAGA-CGGCCAAAGGGGCAGGATGCACAAGCCGAGGATCTGTCGGTCCCCC
65 AGCATGCGGGCGCTCA-ACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGATGCCCC
* * * ** * * ** * * **
11268 CTGCGTGCTACCAATCCTACTACTGCAGTCCTTGATCTGGTCTGATCTTAGAGTAAGAATGAACT
129 CTACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACT
** * * * * * * * *
11333 TTGTATGCCTAAGCCAACCGACGAAACGAGTGAACGGGCAGGTACTACGTCGGCCAGAGAGGCGG
194 CCGTATGCCTAAGCTAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* *
11398 GATGCGCAAGCC---AT-G-CA---TCG-A----T---AGGGTGGTAGGTGGGTTTAGGCACATC
259 GATGCG-AAGCCGTGATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCACATC
* ** * *
11447 TTCATATTTTTGCTGTGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGC
323 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGC
* * * **
11512 TTTCATGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCATGATTT-TTTAACTTTTTA
388 CTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGTAAAACTTTTTA
* * * *
11576 CGGTTTGAGATTTTTTTAAAATTCTTTCAGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGAT
453 CGGATCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTAGACGTGAT
* *
11640 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGG
517 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* *
11705 GACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
582 GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * *
11770 TCTCAAATGCTCTTAAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATTGGGGGCCAATATAA
647 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAA
* * *
11835 GGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCATACCACCCCCCCGCCGCCCCAATCGTC
712 GGGCCAAGTACCAGCACCCATTGCACATCATGTGCGC--A-CA-CCCCCCG-C-CCCCAATCGCC
* * * * * * *
11900 -GAAACTCTAATGCCGCCGGTCAAGTTTTCCGGCGATGCTCCGGCGATGGTGCCCTGGGCAAAAA
771 AG-AACCCCAATGCCGCCGGTCAGGTTCT-CTGCGATGCT-C-GCGATGGTGCCC-CGGCGAAAA
* ** ** * * *
11964 AAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCACG-GTCTGGTCCAA
831 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTTGATTCCGATCCAA
*
12028 TCTTACATT
896 TCTTACACT
* * *
12037 GGGAATGAACTCC-TATGCTTAGACTGGCAATGAACTCCGAATGCCTAAGTCAACCCACGAAATG
1 -GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* ** * ** * * * * * *
12101 AGCGTGCCCGAGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCAGTTGGGTCCCCC
65 AGCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC-GGTCGAT-GCCC
* * * * * * * ** *
12166 CCTACGTGCTACCGATCTTGTTGCCGTAACCCTCAACG-C-GGTCTGATCTTAGACTAGGAATGA
128 CCTACATGCTGCTGATCCTGCTACCGCAACCCT--TGGTCTGGTCTGATCTTAGACTGGGAATGA
* ** * ** * *
12229 ACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGTAGGCACTACACCGACCAGAGAGA
191 ACTCCGTATGCCTAAGCTAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGA
** *
12294 TAGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-G-GT----GGGT--T---TAGG--TA-G--
256 CGGGATGCG-AAGCCGT-GATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCA
* * * *
12343 -ATCTTCATATTTTTGCTATGCCAATGCGATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
319 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCT
** * *
12407 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTT
384 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGTAAAACTT
* *
12472 TTTACGGTTCGGGATTTTTT
449 TTTACGGATCGAGATTTTTT
12492 TTAAATTCAT
Statistics
Matches: 9053, Mismatches: 1433, Indels: 1223
0.77 0.12 0.10
Matches are distributed among these distances:
836 2 0.00
837 11 0.00
838 6 0.00
839 3 0.00
840 5 0.00
841 4 0.00
843 1 0.00
844 9 0.00
845 13 0.00
846 10 0.00
847 14 0.00
848 11 0.00
849 32 0.00
850 81 0.01
851 32 0.00
852 30 0.00
853 366 0.04
854 35 0.00
855 53 0.01
856 16 0.00
857 105 0.01
858 6 0.00
859 112 0.01
860 83 0.01
861 75 0.01
862 110 0.01
863 13 0.00
864 25 0.00
865 12 0.00
866 17 0.00
867 199 0.02
868 24 0.00
869 530 0.06
870 42 0.00
871 6 0.00
872 15 0.00
873 23 0.00
874 142 0.02
875 466 0.05
876 53 0.01
877 14 0.00
878 12 0.00
879 42 0.00
880 78 0.01
881 23 0.00
882 22 0.00
883 58 0.01
884 749 0.08
885 78 0.01
886 188 0.02
887 82 0.01
888 139 0.02
889 486 0.05
890 61 0.01
891 51 0.01
892 279 0.03
893 275 0.03
894 24 0.00
895 214 0.02
896 12 0.00
897 140 0.02
898 160 0.02
899 598 0.07
900 120 0.01
901 330 0.04
902 36 0.00
903 12 0.00
904 55 0.01
905 16 0.00
906 49 0.01
907 340 0.04
908 71 0.01
909 120 0.01
910 70 0.01
911 27 0.00
912 20 0.00
913 473 0.05
914 2 0.00
915 2 0.00
916 5 0.00
917 319 0.04
918 37 0.00
919 31 0.00
920 7 0.00
921 64 0.01
924 1 0.00
925 5 0.00
928 2 0.00
929 8 0.00
930 54 0.01
931 191 0.02
932 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (904 bp):
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGATGCCCCCT
ACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCTAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
TGCGAAGCCGTGATCGATAGGGTGGTAGGTGTGGCAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTT
CATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTGTAAAACTTTTTACGG
ATCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCACCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGCCCCCAATCGCCAGAACCCCAA
TGCCGCCGGTCAGGTTCTCTGCGATGCTCGCGATGGTGCCCCGGCGAAAAAAAATGTGGCACCAG
CACATGCCCGAGCCCAGCATGTGCACCCATAACCCTTGATTCCGATCCAATCTTACACT
Found at i:3235 original size:25 final size:26
Alignment explanation
Indices: 3191--3267 Score: 113
Period size: 25 Copynumber: 3.0 Consensus size: 26
3181 ACTGGTCTGA
*
3191 TCTTACACTGGGAATGAACTCTGTAT
1 TCTTAGACTGGGAATGAACTCTGTAT
3217 TCTTAGACT-GGAATGAACT-TCGTAT
1 TCTTAGACTGGGAATGAACTCT-GTAT
*
3242 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCTGTAT
3268 GCCTAAGTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
24 1 0.02
25 23 0.50
26 22 0.48
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCTGTAT
Found at i:4983 original size:26 final size:26
Alignment explanation
Indices: 4954--5006 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4944 CCGGTCTGAT
*
4954 CTTACACTGGGAATGAAATCTGTATG
1 CTTACACTGGGAATGAAATCCGTATG
* *
4980 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAAATCCGTATG
5006 C
1 C
5007 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAAATCCGTATG
Found at i:5626 original size:12 final size:12
Alignment explanation
Indices: 5609--5640 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
5599 TGAGGGATAG
5609 GGGGCCAATATA
1 GGGGCCAATATA
5621 GGGGCCAATATA
1 GGGGCCAATATA
*
5633 AGGGCCAA
1 GGGGCCAA
5641 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:5857 original size:26 final size:26
Alignment explanation
Indices: 5828--5878 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5818 CCGGTCCGAT
5828 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
5854 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
5879 TACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:7902 original size:869 final size:871
Alignment explanation
Indices: 5383--12498 Score: 7760
Period size: 884 Copynumber: 8.0 Consensus size: 871
5373 TGTTTTTCAC
* * *
5383 ATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATG
1 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
5448 CACAAAAAAATTCAGCTAAAAACTTGAACTGTACAGGATTTTGTGACCATTGGAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCC
5513 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
130 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
5578 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAATATAAGGGCCAAGT
195 GTGTGAGTTCTCGAGGTTTGATGAGGGATA----G--------GGGGCCAATATAAGGGCCAAGC
* * *
5643 ACCAGCACCCATCCCACATCATGTGCACACACCCCCCGCCCGTGCCCCAATCGCCGGAACCCCAA
248 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCC---CCCCAATCGTCGGAACCCCAA
* * * * * *
5708 TGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGGGTGAAAAAAAAATGCGAC
310 TGCCGCCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGG-CAAAAAAAAATACGGC
* * * * *
5773 ACCAGCACATGCCCGAGCCCAGCATCTACACCCGTAACCCTATGTCCGGTCCGATCTTACACTGG
374 ACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAA--C----T---GT-C-AT-GT-C-C---
* **
5838 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATTACTAAGTCAACCCACGAAACGAG
422 G---G---TCCG-ATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * *
5903 TGTGCGGGTGCTAAGTCGGCCAGAGGGGCAGGATGCGCAAGTCGGAGATCGGTCGAGTCCCCCCC
480 CGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGAGT-CCCCCC
* * * * * * * *
5968 TACGTGCTACCAATCCTACTGCCACAACCCTCAGTTCAGACTAATCTTAGACTGGGAATGAACTC
544 TGCGTGCTACCGATCCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * *
6033 CGTATGCGTAAGCCAACTGACGAAAAGAGCGGGCGGGCAGGCATTACACC-AGCCAGAGAGGCGG
609 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTACGCCGA-CCAGAGAGGCGG
**
6097 GATGCTTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
673 GATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
*
6162 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATCTGAAGTTTC
738 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* * * * *
6227 ATGGCAAGACGGCTCGTTTTCTGTTTTTCAC-ATTTTTTGAAACTCTTTACGGTTTGGGATTTTT
803 ATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGAGATTTTT
*
6291 TTTAA
867 TTAAA
* * *
6296 ATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCTCGTATTTTTTTTTGGCAT
1 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCAT
* * * *
6361 GCACAAAAAAATTGAGCTAAAAACTTGAACTGTACAGGATTTTGTGACCATTGGAAAAAAGTGTC
65 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTC
*
6426 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGG
129 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * *
6491 GGTGTGAGTTCTCAAGGTTTGACGAGGGATAGGGGGGTCTAATATAAGGGCCATGCACCAGCACC
194 GGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGG-CCAATATAAGGGCCAAGCACCAGCACC
* * * * ** *
6556 CATCGCACATCATGTGCTCGCACCCCCC-ACCCCCCAATCGT-GGAACCCTAATGTTGTCGGTCA
257 CATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCA
* * * * *
6619 GGTTCTCCAGACGGATGCTGCTGGCGATGGTGCCCGGACCCGGCAAAAAAAATTATGACGGCATC
322 GGTTCTTC-GAC-GATGCT-CCGACGATGGTG-CC---CCGGGCAAAAAAAA--AT-ACGGCACC
* * ** ** *
6684 AGTACATCCCTCGAGCCCTAGCATGTGGCACCCGCAACCAATCCGGTCCGGTCCGATCTCTTACA
377 AGCACATGCCT-GAGCCC-AGCATGT-GCACCCGCAA-CTGTCATGTCCGGTCCGAT-GCTTACA
* * * *
6749 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTCAGCCGGCCA
437 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
* ** *
6814 GAGGGGCAGGATGCATAAGCCGGGGATCGATCGAGTCCCCCCTTGCGTGCTGTCGATCCTGCTGC
502 GAGGGGCAGGATGCACAAGCCGGGGATCGATCGAGTCCCCCC-TGCGTGCTACCGATCCTACTGC
* * * ** * *
6879 CACAACCCTCCATCTGGTCCAATCTTAGACTGTGAATGAACTCCGTATGCCTATGCCAACCGACG
566 CGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * **
6944 AAATGAGCAGGCAGGCAGGCACTACGCCGGTCAGCA-AGGCGGGATGCGCAAGCCATGGATCGAT
631 AAACGAGCGGGCGGGCAGGCACTACGCCGACCAG-AGAGGCGGGATGCGCAAGCCATGGATCGAT
*
7008 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAAGGCTT
695 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* * * * * *
7073 ATAAATTCATACGATGGTCCCTTAAGCCTTCATGTGAAGTTTCCTGGCAAGATGACTCATTTTTT
760 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
7138 ATTTTTCACAATTTTTAAAACATTTTACGGTTCGAGATATTTTTAAA
825 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAA
* *
7185 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAAG
1 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
7250 CACAAAAACAA-TAAGCTAAAAACTCAAAATGTACAGGATTTCGTGACCATTTG-AAAAGTGTCC
66 CACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGTGTCC
* * * *
7313 TCATTGCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
130 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
7378 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGCACCAGCAACCAT
195 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* * * *
7443 CGCACATCATGTGCTCACACCCCCCGCCCCCCCAATTGTCGGAACCCCAATGTCGTCGGTCAGGT
260 CGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGT
*
7508 TCTTCGACGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAAATACGGCACCAGCACATACCTGA
325 TCTTCGACGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAAATACGGCACCAGCACATGCCTGA
* * * *
7573 GCCCAGAATGTGCACCCGCAACTGTCA-GTCCGGTCCGAT-TTTACACTAGGAATGAACTCGGTA
390 GCCCAGCATGTGCACCCGCAACTGTCATGTCCGGTCCGATGCTTACACTGGGAATGAACTCCGTA
* * *
7636 TGCCTAAGTCAACACACGAAACGAGCGTGCGAGCGCTCAGTCGGCCAGAGGGGCAGGATGTGA-A
455 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATG-CACA
* * * * * ** **
7700 AGTCGGGGATCGATCGAGTCTCCCTCTGCGTGCTACCGATCCTGCTGCTGCAACTCTCGGTCCAT
519 AGCCGGGGATCGATCGAGTC-CCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCAATCCGG
* * * *
7765 TCTGAT-TTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAACGAGCGGACGAGC
583 TCTGATCTT-AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * *
7829 GGGCACTACGCCGACCAGAAAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
647 AGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
*
7894 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAAGG
712 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
7959 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTCTTCACGATTTTTG
777 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
8024 AAACTTTTTATGGTTCGGGATTTTTTTAAA
842 AAACTTTTTACGGTTCGAGATTTTTTTAAA
* * * * * *
8054 ATTTTTTTAGATGGAGTTTTGGCACCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGTCAAG
1 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * **
8119 CATAAAAAAA--AAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTG-AAAAGTGTTTC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGTGTCCC
*
8181 CATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
131 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
8246 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATC
196 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATC
* * * * *
8311 GCACATCATGCGCGCACACCCCTTCCGCCAACCCCAATCGAT-GGAACCCTAATGTCGCCAGTCA
261 GCACATCATGTGCGCACACCCC--CCGCC-CCCCCAATCG-TCGGAACCCCAATGCCGCCGGTCA
* * * *
8375 GGTTC-TC--C-A------G-CGATGGTGCACCAGGCAAAAAAAAAATACGGCACCAGCACTTAC
322 GGTTCTTCGACGATGCTCCGACGATGGTGCCCCGGGC-AAAAAAAAATACGGCACCAGCACAT-G
* * ** * *
8429 CCT-AGCCCAGCATGTGCACCGGTAACCCTC-GGTCCGAT-CGAT-CTTACACTGGGAATGAACT
385 CCTGAGCCCAGCATGTGCACCCGCAACTGTCATGTCCGGTCCGATGCTTACACTGGGAATGAACT
* * * * * * *
8490 CCGTATGCCAAAGTCAACACACGAAACAAGCGTGCGGGTGTTCAGCCGGCCAGAAGGGCAGGAT-
450 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATG
* * * * ** * *
8554 -AC--G-CGGGGATCG-GCAGGGTCCCCCCTGTGTGCTGCCGATCCTACTAACGTAACCCTCGAT
515 CACAAGCCGGGGATCGATC-GAGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCAAT
* * * * * *
8614 CCAG-CTTGATCTTAGACTAGGAATGAACTCCGTATGCCTAGGCCAACCGATGAAACAAACGGGC
579 CCGGTC-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * ** *
8678 GGGCGGGCACTACGCCGGCTAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
643 GGGCAGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
* * * *
8743 GGTTTAGGCATATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTCTAAATTCATAAA
708 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
8808 ATGGTCCCTTAACCCTTCATGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
773 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*
8873 TTTGAAACTTTTTACGGTTCAAGATTTTTTTAAA
838 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAA
* *
8907 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATG
1 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
8972 CACAAAAAAAGTT-AGCTAAAAATTCGAAGTGTATAGGATTTTGTGATCATTTGAAAAAAATGTC
66 CACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTC
* *
9036 CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGG
129 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
9101 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAATATAAGGGCCAAA
194 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-----AA--G-C--A
* * * *
9166 TGCCAGCACCCATCCCACATCATGTGCACACACCCCCCGTCCGTGCCCCAATCGCCGGAACCCCA
249 --CCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-CC--CCCCCAATCGTCGGAACCCCA
* * * * * * * **
9231 ATGCCGTCGGTCATGTTCTCCGGCAATGCTCC-AGCGATGGTGCCCCGGGTGAAAAACAAATGTG
309 ATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGA-CGATGGTGCCCCGGG-CAAAAAAAAATACG
* * * * * *
9295 ACACCAGCACATGCCCGAGCCCAGCATCTACACTCGCAACCCTATGTCCGGTCCGATCTTACACT
372 GCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAA--C----T---GT-C-AT-GT-C-C-
* **
9360 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATTACTAAGTCAACCCACGAAACG
422 --G---G---TCCG-ATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * * *
9425 AGCGTACGGGTGCTAAGTCGGCAAGAGGGACAGGATGCGCAAGTCGGGGATCG-GCTGAGTCCTC
478 AGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATC-GAGTCC-C
* * * * * * ** *
9489 GCCTACGTGCTACCGATCCTACTGCCACAACCCTCAGTTCGGACCAATCTTAGACTCGGAATGAA
541 CCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAA
* * * * * * *
9554 CTCCGTATGCGTAAGCCAACTGATGAAACGAGCGGGCAGGCAAGCATTACACC-AGCCAGAGAGG
606 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTACGCCGA-CCAGAGAGG
9618 CGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
670 CGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
9683 CATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATCTGAAGT
735 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* * * *
9748 TTCATGGCAAGACAACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCGGGATTT
800 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTT
*
9813 TTTTTAA
865 TTTTAAA
* ** *** * *
9820 ATTTTTTCAGATGGAGTTTTCACCCCAAACACAGTAGACATGATCCTTCTATTTTTGTTGGCATG
1 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
9885 CATAAAAAAATTTAGCTTAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCC
* *
9950 CCATTTCATACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGG
130 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * * * * *
10015 GTTTAAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACTAGCACCCAC
195 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* * *
10080 CGCACATCATGTGCGCACACCCCCC-ACCCCCCAATCGTCGGAACCCTAATGCCGTCGGTCAGGT
260 CGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
10144 TC-TC--CGA-----CGAC---GGTGCCCTGAGC-GAAAAAAATACAGCACCAGCACATG-CTCG
325 TCTTCGACGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAAATACGGCACCAGCACATGCCT-G
* *
10196 AGCCCAGCATGTGCACCCGTAACCCTCAGTCTGGTCTGATCTTGCACTGAGAATGAACTCCGTAT
389 AGCCCAGCATGTGCACCCG-------CA-ACT-GTC--AT-GT-C-C---G---G---TCCG-AT
* * *
10261 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCGCTCAG
430 GCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
10326 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGA-CCAGGTCCCCCCCTTCGTGCTACCGAT
495 TCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGA-GT-CCCCCCTGCGTGCTACCGAT
* * * * * * * *
10390 CTTGCTGTCGTAACTCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCC
558 CCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
10455 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGTGGCGGGATGCGCAAGCCGTG
623 AACCGACGAAACGAGCGGGCGGGCAGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCATG
10520 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
688 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
**
10585 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTTTGTGAAGTTTCATGGCAAGACGACTC
753 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * ** *
10650 GTCTTCTATTTTCCATGATTTTCAAAACTTTTTACTGTTCGAGATTTTTTTTAAA
818 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTTAAA
*
10705 ATTTTTTCAGAAGGAG-TTTGGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
1 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
10769 CACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCC
** * *
10834 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACAAGTAAAATCTTAAATGCTCTTTAAGGGC
130 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
10899 GTGTGAGTTCTCGAGGTTTGATGAGAGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
195 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* * * * *
10964 TGCACATCTTGTGCGCACACCCCCC-ACCCCCTATTAC--CGGAACCCCAATGCCGCCGGTCAGG
260 CGCACATCATGTGCGCACACCCCCCGCCCCCCCAAT-CGTCGGAACCCCAATGCCGCCGGTCAGG
** * ** * ** *
11026 TTC-TCTGATAATGCTCCGACGATGGTGCACCGATCGAAAAAAAATGTGGCACTAGCACATGCCT
324 TTCTTC-GACGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAAATACGGCACCAGCACATGCCT
*
11090 GAGCCCAGCAGGTGCACCCGCAACCCACTGTTCGATCCGATCTTACACTGGGAATGAACTCCGTA
388 GAGCCCAGCATGTGCACCCGC-A---ACTG-TC-AT--G----T-C-C---G---G---TCCG-A
* ** *
11155 TGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCA
429 TGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
11220 GACGGCCAAAGGGGCAGGATGCACAAGCCGAGGATCTG-TCG-GTCCCCCCTGCGTGCTACCAAT
494 GTCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GATCGAGTCCCCCCTGCGTGCTACCGAT
* * ** ** * * ** **
11283 CCTACTACTGCAGTCCTTGATCTGGTCTGATCTTAGAGTAAGAATGAACTTTGTATGCCTAAGCC
558 CCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * *
11348 AACCGACGAAACGAGTGAACGGGCAGGTACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCATG
623 AACCGACGAAACGAGCGGGCGGGCAGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCATG
* * **
11413 CATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTT
688 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* * *
11478 ACGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCATGTGAAGTTTCATGGCAAAACGACTC
753 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * *
11543 GTTTTCTATTTTTCATGATTTTT-TAACTTTTTACGGTTTGAGATTTTTTTAAA
818 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAA
*
11596 ATTCTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
1 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
11661 CACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGGGACCATTTGAAAAAGGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA-GTGTCC
*
11726 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTAAAGGGG
130 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
11791 GTGTGAGTTCTTGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACAAGCACCCAT
195 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* * * *
11856 CGCACATCATGTGCGCATACCACCCCCCCGCCGCCCCAATCGTCGAAACTCTAATGCCGCCGGTC
260 CGCACATCATGTGCGC--A-CA-CCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTC
* * * * **
11921 AAGTT-TTCCGGCGATGCTCCGGCGATGGTGCCCTGGGCAAAAAAAAATGTGGCACCAGCACATG
321 AGGTTCTT-CGACGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAAATACGGCACCAGCACATG
* *
11985 CCTGAGCCCAGCATGTGCACCCGCAACCCACGGTCTGGTCCAATCTTACATTGGGAATGAACTCC
385 CCTGAGCCCAGCATGTGCACCCGC-A---A----CT-GT-C-AT-GT-C----CG---G---TCC
* * * * * ** *
12050 TATGCTTAGACTGGCAATGAACTCCGAATGCCTAAGTCAACCCACGAAATGAGCGTGCCCGAGCT
427 GATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * *
12115 CAGTCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATC-AGTTGGGTCCCCCCCTACGTGCTACC
492 CAGTCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGA-TCGAGT-CCCCCCTGCGTGCTACC
* ** * *
12179 GATCTTGTTGCCGTAACCCTCAA-CGCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
555 GATCCTACTGCCGCAACCCTCAATC-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * ***
12243 AGCCAACCGACAAAACGAGCGGGCGGGTAGGCACTACACCGACCAGAGAGATAGGATGCGCAAGC
619 AGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGC
* * * * * *
12308 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAGATCTTCATATTTTTGCTATGCCAATGCGAT
684 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
12373 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
749 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * *
12438 ACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTTAA
814 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAA
12496 ATT
1 ATT
12499 CATTGGGAAT
Statistics
Matches: 5352, Mismatches: 676, Indels: 363
0.84 0.11 0.06
Matches are distributed among these distances:
852 1 0.00
853 359 0.07
854 15 0.00
855 37 0.01
856 1 0.00
857 117 0.02
859 91 0.02
860 53 0.01
861 3 0.00
862 2 0.00
864 1 0.00
866 1 0.00
867 193 0.04
868 7 0.00
869 514 0.10
870 38 0.01
871 13 0.00
872 4 0.00
873 11 0.00
874 6 0.00
875 6 0.00
876 16 0.00
877 2 0.00
879 15 0.00
880 50 0.01
882 3 0.00
883 41 0.01
884 746 0.14
885 46 0.01
886 137 0.03
888 66 0.01
889 432 0.08
890 9 0.00
891 41 0.01
892 257 0.05
893 264 0.05
894 15 0.00
895 156 0.03
896 12 0.00
897 134 0.03
898 117 0.02
899 291 0.05
900 42 0.01
901 37 0.01
902 16 0.00
903 14 0.00
904 50 0.01
905 10 0.00
906 7 0.00
907 72 0.01
908 15 0.00
909 7 0.00
910 8 0.00
911 11 0.00
912 18 0.00
913 551 0.10
914 171 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
CTTCGACGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAAATACGGCACCAGCACATGCCTGAG
CCCAGCATGTGCACCCGCAACTGTCATGTCCGGTCCGATGCTTACACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCACAAG
CCGGGGATCGATCGAGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCAATCCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGC
ACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCGAGATTTTTTTAAA
Found at i:9150 original size:12 final size:12
Alignment explanation
Indices: 9133--9164 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
9123 TGAGGGATAG
9133 GGGGCCAATATA
1 GGGGCCAATATA
9145 GGGGCCAATATA
1 GGGGCCAATATA
*
9157 AGGGCCAA
1 GGGGCCAA
9165 ATGCCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:9381 original size:26 final size:26
Alignment explanation
Indices: 9352--9402 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
9342 CCGGTCCGAT
9352 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
9378 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
9403 TACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:11182 original size:26 final size:26
Alignment explanation
Indices: 11131--11183 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11121 TCGATCCGAT
*
11131 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
11157 CTTAGACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
11183 C
1 C
11184 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:17148 original size:26 final size:26
Alignment explanation
Indices: 17112--17164 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17102 CCGATCTGAT
*
17112 CTTACACTGGGAATTAACTCGGTATG
1 CTTACACTGGGAATGAACTCGGTATG
* *
17138 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCGGTATG
17164 C
1 C
17165 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCGGTATG
Found at i:18125 original size:26 final size:26
Alignment explanation
Indices: 18087--18139 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18077 GCGGTCCAAT
*
18087 CTTACACTTGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
18113 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18139 C
1 C
18140 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:19012 original size:26 final size:26
Alignment explanation
Indices: 18983--19035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18973 CCGGTCTGAT
18983 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
19009 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
19035 C
1 C
19036 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Done.