Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168348.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_57, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 144347
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
File 1 of 4
Found at i:146 original size:11 final size:12
Alignment explanation
Indices: 115--155 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
105 TTATTATTTA
115 ATAAT-AATAATT
1 ATAATAAAT-ATT
127 ATAAT-AATATT
1 ATAATAAATATT
138 A-AATAAATATT
1 ATAATAAATATT
149 ATAATAA
1 ATAATAA
156 CTAATAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 3 0.11
11 11 0.41
12 13 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAATAAATATT
Found at i:161 original size:19 final size:18
Alignment explanation
Indices: 109--169 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
99 TTTAAATTAT
*
109 TATT-TAATAATAATAAT
1 TATTATAATAATAATAAA
* *
126 TATAATAATATTAAATAAA
1 TATTATAATAAT-AATAAA
145 TATTATAATAACTAATAAAA
1 TATTATAATAA-TAAT-AAA
165 TATTA
1 TATTA
170 GTTATTTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
17 3 0.09
18 6 0.17
19 17 0.49
20 9 0.26
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
TATTATAATAATAATAAA
Found at i:183 original size:31 final size:30
Alignment explanation
Indices: 104--197 Score: 82
Period size: 31 Copynumber: 3.0 Consensus size: 30
94 TGTATTTTAA
*
104 ATTATTATTTAATAATAATAATTATAATAAT
1 ATTATTATTTAAT-ATAATAATAATAATAAT
* ** *
135 ATTAAATAAATATTATAATAACTAATAA-AAT
1 ATT-ATTATTTAATATAATAA-TAATAATAAT
* *
166 ATTAGTTATTTAATATAATACTATTAATAAT
1 ATTA-TTATTTAATATAATAATAATAATAAT
197 A
1 A
198 AAACAATTTT
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
30 6 0.12
31 31 0.65
32 11 0.23
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (30 bp):
ATTATTATTTAATATAATAATAATAATAAT
Found at i:286 original size:16 final size:16
Alignment explanation
Indices: 248--297 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
238 CCTATTTTAA
248 TAATA-TATATTATAAT
1 TAATATTATA-TATAAT
*
264 CAA-ATTATATATAAT
1 TAATATTATATATAAT
* *
279 TAATATTAAAAATAAT
1 TAATATTATATATAAT
295 TAA
1 TAA
298 AAATTATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 9 0.32
16 19 0.68
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATATTATATATAAT
Found at i:309 original size:17 final size:18
Alignment explanation
Indices: 289--327 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
279 TAATATTAAA
289 AATAAT-TAAAAATTATT
1 AATAATATAAAAATTATT
*
306 AAT-ATATAATAATTATT
1 AATAATATAAAAATTATT
323 AATAA
1 AATAA
328 GTAATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 2 0.11
17 16 0.84
18 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AATAATATAAAAATTATT
Found at i:314 original size:37 final size:37
Alignment explanation
Indices: 270--343 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
260 TAATCAAATT
270 ATATATAATTAA-TATTAA-AAATAATTAAAAATTATTA
1 ATATATAA-TAATTATTAATAAATAATT-AAAATTATTA
* *
307 ATATATAATAATTATTAATAAGTAATTTAAATTATTA
1 ATATATAATAATTATTAATAAATAATTAAAATTATTA
344 CTAAATAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 3 0.09
37 23 0.70
38 7 0.21
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (37 bp):
ATATATAATAATTATTAATAAATAATTAAAATTATTA
Found at i:332 original size:17 final size:16
Alignment explanation
Indices: 107--332 Score: 59
Period size: 15 Copynumber: 13.9 Consensus size: 16
97 ATTTTAAATT
107 ATTATTTAATAATAATA
1 ATTA-TTAATAATAATA
*
124 ATTA-TAATAATATTA
1 ATTATTAATAATAATA
*
139 A--ATAAATATTATAATA
1 ATTATTAATA--ATAATA
* * *
155 ACTAATAA-AATATTA
1 ATTATTAATAATAATA
*
170 GTTATTTAAT-ATAAT-
1 ATTA-TTAATAATAATA
* *
185 ACTATTAATAATAAAACA
1 ATTATTAATAAT--AATA
203 ATT-TTCAA-ATATAATA
1 ATTATT-AATA-ATAATA
*
219 ATTATTAA-AAAAATA
1 ATTATTAATAATAATA
*
234 TATCCCTATT-TTAATAAT-
1 -AT---TATTAATAATAATA
*
252 ATATATT-ATAATCA-A
1 AT-TATTAATAATAATA
267 ATTA-TATATAATTAAT-
1 ATTATTA-ATAA-TAATA
** *
283 ATTAAAAATAATTAAAA
1 ATTATTAATAA-TAATA
300 ATTATTAATATATAATA
1 ATTATTAATA-ATAATA
317 ATTATTAATAAGTAAT
1 ATTATTAATAA-TAAT
333 TTAAATTATT
Statistics
Matches: 154, Mismatches: 27, Indels: 56
0.65 0.11 0.24
Matches are distributed among these distances:
13 2 0.01
14 11 0.07
15 42 0.27
16 39 0.25
17 41 0.27
18 10 0.06
19 9 0.06
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (16 bp):
ATTATTAATAATAATA
Found at i:643 original size:16 final size:17
Alignment explanation
Indices: 611--647 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
601 AATAAAATAA
*
611 TAATAATTTATTAATCT
1 TAATAAATTATTAATCT
628 TAATAAATTA-TAATCT
1 TAATAAATTATTAATCT
644 TAAT
1 TAAT
648 TTATAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATAAATTATTAATCT
Found at i:1108 original size:19 final size:19
Alignment explanation
Indices: 1086--1152 Score: 50
Period size: 19 Copynumber: 3.6 Consensus size: 19
1076 TTATTAGTAT
1086 ATATATAAATAATAATTTA
1 ATATATAAATAATAATTTA
* *
1105 ATAT-TATACT-ATTATATTA
1 ATATATA-AATAATAAT-TTA
*
1124 A-ATATAAATAAAAATTTA
1 ATATATAAATAATAATTTA
* *
1142 AAAAATAAATA
1 ATATATAAATA
1153 TGTTTTTTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 14 0.38
19 23 0.62
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (19 bp):
ATATATAAATAATAATTTA
Found at i:1600 original size:28 final size:31
Alignment explanation
Indices: 1569--1667 Score: 71
Period size: 31 Copynumber: 3.2 Consensus size: 31
1559 TTATTAAAAA
1569 TAAT-TATA-TAAA-AACTAATAATATTATT
1 TAATATATATTAAATAACTAATAATATTATT
* * *
1597 TAATATTTATTAAATTATTAATAATATTA-T
1 TAATATATATTAAATAACTAATAATATTATT
* * *
1627 TAGTATTATATTATAAATAAATAATTATAATTATT
1 TAATA-TATA-T-TAAATAACTAATAAT-ATTATT
1662 ATAATA
1 -TAATA
1668 ATTTATAATA
Statistics
Matches: 53, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
28 4 0.08
29 3 0.06
30 9 0.17
31 15 0.28
32 1 0.02
33 12 0.23
34 4 0.08
35 1 0.02
36 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (31 bp):
TAATATATATTAAATAACTAATAATATTATT
Found at i:1634 original size:21 final size:19
Alignment explanation
Indices: 1589--1635 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
1579 AAAACTAATA
1589 ATATTATTTAATATTTATT
1 ATATTATTTAATATTTATT
*
1608 AAATTA-TTAATAATATTATT
1 ATATTATTTAAT-AT-TTATT
1628 AGTATTAT
1 A-TATTAT
1636 ATTATAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
18 5 0.23
19 7 0.32
20 6 0.27
21 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATATTATTTAATATTTATT
Found at i:1639 original size:26 final size:25
Alignment explanation
Indices: 1600--1673 Score: 68
Period size: 26 Copynumber: 3.1 Consensus size: 25
1590 TATTATTTAA
*
1600 TATT-TATTAAATTATTAATAATAT
1 TATTATATTATATTATTAATAATAT
*
1624 TATTAGTATTATATTATAAATAA-AT
1 TATTA-TATTATATTATTAATAATAT
* *
1649 AATTATAAT-TATTA-TAATAAT-T
1 TATTATATTATATTATTAATAATAT
1671 TAT
1 TAT
1674 AATAGAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
22 8 0.20
23 5 0.12
24 7 0.17
25 6 0.15
26 15 0.37
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (25 bp):
TATTATATTATATTATTAATAATAT
Found at i:1987 original size:16 final size:16
Alignment explanation
Indices: 1968--1999 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1958 CTTATAAATC
1968 TTATAAATTATTATAA
1 TTATAAATTATTATAA
*
1984 TTATAATTTATTATAA
1 TTATAAATTATTATAA
2000 CAATATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATAAATTATTATAA
Found at i:2347 original size:19 final size:19
Alignment explanation
Indices: 2280--2348 Score: 56
Period size: 19 Copynumber: 3.6 Consensus size: 19
2270 TATTATTTTT
2280 ATTAATT-TAAT-ATATATA
1 ATTAATTATAATAAT-TATA
*
2298 ATCTAATTAT-ATATATTAATC
1 AT-TAATTATAATA-ATT-ATA
*
2319 ATT-ATAATAATAATTATA
1 ATTAATTATAATAATTATA
2337 ATTAATTATAAT
1 ATTAATTATAAT
2349 TGTTAAATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 13
0.70 0.07 0.23
Matches are distributed among these distances:
18 7 0.17
19 21 0.52
20 6 0.15
21 6 0.15
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTAATTATAATAATTATA
Found at i:2371 original size:36 final size:37
Alignment explanation
Indices: 2286--2371 Score: 88
Period size: 38 Copynumber: 2.3 Consensus size: 37
2276 TTTTATTAAT
2286 TTAATATATATAATCTAATTATATATATTAATCATTATA
1 TTAATAT-TATAATCTAATTATATATATTAA-CATTATA
* *
2325 ATAATAATTATAAT-TAATTATA-ATTGTTAA-ATTATA
1 TTAAT-ATTATAATCTAATTATATA-TATTAACATTATA
2361 TTAAATATTAT
1 TT-AATATTAT
2372 TACAATGGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
36 12 0.29
37 4 0.10
38 13 0.32
39 10 0.24
40 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (37 bp):
TTAATATTATAATCTAATTATATATATTAACATTATA
Found at i:2495 original size:20 final size:21
Alignment explanation
Indices: 2444--2496 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
2434 AAATTAATCA
2444 TAATTT-ATAA-ATTACATAT
1 TAATTTAATAATATTACATAT
*
2463 TAATTTTAA-AATATTACA-GT
1 TAA-TTTAATAATATTACATAT
2483 TAATTTAATAATAT
1 TAATTTAATAATAT
2497 AAATAAACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 8 0.28
20 14 0.48
21 7 0.24
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (21 bp):
TAATTTAATAATATTACATAT
Found at i:2782 original size:14 final size:15
Alignment explanation
Indices: 2763--2791 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2753 TAATTATTAA
2763 TTTTTATTAT-ATAT
1 TTTTTATTATGATAT
2777 TTTTTATTATGATAT
1 TTTTTATTATGATAT
2792 ATAGTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTTATTATGATAT
Found at i:2883 original size:13 final size:14
Alignment explanation
Indices: 2846--2893 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 14
2836 AATCATTTTA
2846 ATAATTTAA-TATT
1 ATAATTTAATTATT
* *
2859 AAAATTAAAATTATT
1 ATAATT-TAATTATT
2874 -TAATTTAATTATT
1 ATAATTTAATTATT
2887 ATAATTT
1 ATAATTT
2894 TGGATAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
13 12 0.43
14 12 0.43
15 4 0.14
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATAATTTAATTATT
Found at i:2892 original size:22 final size:22
Alignment explanation
Indices: 2844--2892 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
2834 TAAATCATTT
*
2844 TAATAATTTAATATTAAAATTA
1 TAATTATTTAATATTAAAATTA
* *
2866 AAATTATTTAAT-TTAATTATTA
1 TAATTATTTAATATTAA-AATTA
2888 TAATT
1 TAATT
2893 TTGGATAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TAATTATTTAATATTAAAATTA
Found at i:4637 original size:16 final size:14
Alignment explanation
Indices: 4600--4668 Score: 61
Period size: 15 Copynumber: 4.6 Consensus size: 14
4590 AACTACACTA
*
4600 ATATAATCTATATT
1 ATATAATTTATATT
4614 ATATAATTATATATT
1 ATATAATT-TATATT
4629 ATAATAATTTAATATT
1 AT-ATAATTT-ATATT
4645 AT-TAAATTTATTAATT
1 ATAT-AATTTA-T-ATT
4661 A-ATAATTT
1 ATATAATTT
4669 TGGATTATAA
Statistics
Matches: 47, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
14 9 0.19
15 20 0.43
16 18 0.38
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (14 bp):
ATATAATTTATATT
Found at i:4766 original size:15 final size:15
Alignment explanation
Indices: 4742--4821 Score: 60
Period size: 15 Copynumber: 5.3 Consensus size: 15
4732 ATTGTATGAT
*
4742 TATAATTTATAATTA
1 TATAAATTATAATTA
4757 TATAAATTATAATTA
1 TATAAATTATAATTA
4772 CTAATCAAA-TACT--TGTA
1 -T-AT-AAATTA-TAAT-TA
*
4789 TATAAATTATAATCA
1 TATAAATTATAATTA
*
4804 TATACATTAT-ATTA
1 TATAAATTATAATTA
4818 TATA
1 TATA
4822 TAAAGTACAA
Statistics
Matches: 53, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
14 11 0.21
15 28 0.53
16 4 0.08
17 6 0.11
18 4 0.08
ACGTcount: A:0.47, C:0.06, G:0.01, T:0.45
Consensus pattern (15 bp):
TATAAATTATAATTA
Found at i:5191 original size:15 final size:15
Alignment explanation
Indices: 5173--5215 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 15
5163 AACAATCTTA
5173 ATATTAATATTTTGC-
1 ATATTAATATTTT-CT
5188 ATATTAATATATTTCT
1 ATATTAATAT-TTTCT
5204 ATTATTAATATT
1 A-TATTAATATT
5216 AACAATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 11 0.44
16 5 0.20
17 9 0.36
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (15 bp):
ATATTAATATTTTCT
Found at i:5587 original size:13 final size:13
Alignment explanation
Indices: 5569--5593 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5559 AGGATTTATT
5569 ATAAAATTATTAG
1 ATAAAATTATTAG
5582 ATAAAATTATTA
1 ATAAAATTATTA
5594 ATATTTTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
ATAAAATTATTAG
Found at i:5780 original size:23 final size:22
Alignment explanation
Indices: 5754--5807 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
5744 AACTAATATC
5754 AATATATTTTAAATATAAATTCT
1 AATATATTTTAAATATAAATT-T
**
5777 AATAT-TATTTACTTATAAATTT
1 AATATAT-TTTAAATATAAATTT
*
5799 TATATATTT
1 AATATATTT
5808 AGTGAACTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (22 bp):
AATATATTTTAAATATAAATTT
Found at i:6003 original size:12 final size:12
Alignment explanation
Indices: 5988--6042 Score: 50
Period size: 12 Copynumber: 4.9 Consensus size: 12
5978 AATTAAATTT
5988 ATTAATTATACA
1 ATTAATTATACA
6000 ATTAATTAT--A
1 ATTAATTATACA
6010 ATT-A-TATA-A
1 ATTAATTATACA
6019 TATTAATTATAACA
1 -ATTAATTAT-ACA
6033 A-TAATTATAC
1 ATTAATTATAC
6043 TAAATATTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 13
0.74 0.00 0.26
Matches are distributed among these distances:
8 3 0.08
9 2 0.05
10 7 0.19
11 3 0.08
12 19 0.51
13 2 0.05
14 1 0.03
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (12 bp):
ATTAATTATACA
Found at i:6051 original size:24 final size:26
Alignment explanation
Indices: 6007--6057 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 26
5997 ACAATTAATT
6007 ATAATTATATAATATTAATTATAACA
1 ATAATTATATAATATTAATTATAACA
6033 ATAATTATACTAA-A-T-ATTATAACA
1 ATAATTATA-TAATATTAATTATAACA
6057 A
1 A
6058 ATCTATTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 10 0.42
25 1 0.04
26 10 0.42
27 3 0.12
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (26 bp):
ATAATTATATAATATTAATTATAACA
Found at i:6075 original size:24 final size:22
Alignment explanation
Indices: 6018--6075 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 22
6008 TAATTATATA
6018 ATATT-AATTATAACAATAATT
1 ATATTAAATTATAACAATAATT
* *
6039 ATACTAAATATTATAACAAATCTATT
1 ATA-TTAA-ATTATAAC-AAT-AATT
6065 ATATTAAATTA
1 ATATTAAATTA
6076 ATAATATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
21 3 0.10
22 1 0.03
23 1 0.03
24 12 0.41
25 6 0.21
26 6 0.21
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (22 bp):
ATATTAAATTATAACAATAATT
Found at i:6612 original size:12 final size:12
Alignment explanation
Indices: 6581--6612 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
6571 AAAAGCTCAA
6581 AGTTAATATATT
1 AGTTAATATATT
6593 AGTT-ATATATT
1 AGTTAATATATT
6604 AGTTAATAT
1 AGTTAATAT
6613 TTATAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (12 bp):
AGTTAATATATT
Found at i:6631 original size:18 final size:18
Alignment explanation
Indices: 6595--6634 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
6585 AATATATTAG
6595 TTATATATTAGTTAATAT
1 TTATATATTAGTTAATAT
*
6613 TTATAATATTA-TTACTAT
1 TTAT-ATATTAGTTAATAT
6631 TTAT
1 TTAT
6635 TATAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (18 bp):
TTATATATTAGTTAATAT
Found at i:7190 original size:65 final size:65
Alignment explanation
Indices: 7072--7194 Score: 151
Period size: 65 Copynumber: 1.9 Consensus size: 65
7062 TTCAAAATAG
** ** *
7072 TAATAAAATAGTATTATTTTATTCTAAATAATTTTGTATGAATAGAAATAATTGGTTTTGGAACA
1 TAATAAAATAGTATTATTTTATTCTAAATAAGCTTAAATGAATAGAAACAATT-GTTTTGGAACA
7137 T
65 T
* *
7138 TAATAAATTA-TATTATTTTATT-TGAAATAAGCTTAAATGAATAGAACCAATTGTTTT
1 TAATAAAATAGTATTATTTTATTCT-AAATAAGCTTAAATGAATAGAAACAATTGTTTT
7195 ATGACAAAAC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
64 6 0.12
65 34 0.69
66 9 0.18
ACGTcount: A:0.41, C:0.04, G:0.11, T:0.44
Consensus pattern (65 bp):
TAATAAAATAGTATTATTTTATTCTAAATAAGCTTAAATGAATAGAAACAATTGTTTTGGAACAT
Found at i:8077 original size:24 final size:22
Alignment explanation
Indices: 8035--8081 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 22
8025 TTAATTAAAA
*
8035 TTTATATTAATAAAGATAATAT
1 TTTATATTAATAAAAATAATAT
8057 TTTATTATTAAATAAAAATAATAT
1 TTTA-TATT-AATAAAAATAATAT
8081 T
1 T
8082 GTAATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.18
23 4 0.18
24 14 0.64
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
TTTATATTAATAAAAATAATAT
Found at i:8366 original size:16 final size:16
Alignment explanation
Indices: 8345--8400 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
8335 TATAATATGG
*
8345 ATTATAATAAATGGTT
1 ATTATAATAAATGCTT
* * *
8361 ATTATATTATAT-TTT
1 ATTATAATAAATGCTT
*
8376 ATATATAATAATTGCTT
1 AT-TATAATAAATGCTT
8393 ATTATAAT
1 ATTATAAT
8401 CCATATTATA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
15 4 0.13
16 23 0.74
17 4 0.13
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (16 bp):
ATTATAATAAATGCTT
Found at i:8410 original size:32 final size:32
Alignment explanation
Indices: 8347--8410 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
8337 TAATATGGAT
* * * *
8347 TATAATAAATGGTTATTATATTATATTTTATA
1 TATAATAAATGCTTATTATAATACATATTATA
* *
8379 TATAATAATTGCTTATTATAATCCATATTATA
1 TATAATAAATGCTTATTATAATACATATTATA
8411 ATGTATATTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (32 bp):
TATAATAAATGCTTATTATAATACATATTATA
Found at i:8564 original size:23 final size:23
Alignment explanation
Indices: 8512--8565 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
8502 TCTTGTTTAG
*
8512 TATTAATTA-TATAATTAATGTAT
1 TATTAA-TAGTATAATTAATGTAA
*
8535 TATTAATAGTATAATCTAATTTAA
1 TATTAATAGTATAAT-TAATGTAA
8559 TA-TAATA
1 TATTAATA
8566 TAATAATGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 2 0.07
23 17 0.63
24 8 0.30
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (23 bp):
TATTAATAGTATAATTAATGTAA
Found at i:9270 original size:19 final size:21
Alignment explanation
Indices: 9246--9285 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
9236 TATTAAATAG
9246 TATTAAATT-AT-AATTATAA
1 TATTAAATTGATAAATTATAA
9265 TATTAAATTGATAAATTATAA
1 TATTAAATTGATAAATTATAA
9286 AAATATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.47
20 2 0.11
21 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (21 bp):
TATTAAATTGATAAATTATAA
Found at i:9399 original size:23 final size:23
Alignment explanation
Indices: 9355--9406 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
9345 CTATATTAAT
* * **
9355 AATTATTTTAGTTTATGTATTTA
1 AATTATTATAATTTATCAATTTA
9378 AATTATTATAATTTATCAATTTA
1 AATTATTATAATTTATCAATTTA
9401 ATATTA
1 A-ATTA
9407 AACAATATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (23 bp):
AATTATTATAATTTATCAATTTA
Found at i:9421 original size:34 final size:34
Alignment explanation
Indices: 9378--9456 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
9368 TATGTATTTA
9378 AATT-ATTATAATTT-ATCAATTTAATATTAAA-C
1 AATTAATTATAATTTAAT-AATTTAATATTAAATC
* *
9410 AATATAATTATAATTTAATAATTTATTATTAAATT
1 AAT-TAATTATAATTTAATAATTTAATATTAAATC
9445 AATTAATTATAA
1 AATTAATTATAA
9457 AATTAGTATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
32 3 0.07
33 1 0.02
34 32 0.78
35 5 0.12
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (34 bp):
AATTAATTATAATTTAATAATTTAATATTAAATC
Found at i:9447 original size:16 final size:16
Alignment explanation
Indices: 9428--9491 Score: 58
Period size: 16 Copynumber: 4.0 Consensus size: 16
9418 TATAATTTAA
9428 TAATTTATTATTAAAT
1 TAATTTATTATTAAAT
* *
9444 TAATTAATTATAAAAT
1 TAATTTATTATTAAAT
* * *
9460 TAGTATATTAATT-GAT
1 TAATTTATT-ATTAAAT
*
9476 TAATTTAATATTAAAT
1 TAATTTATTATTAAAT
9492 ATATTTTGAT
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
15 3 0.09
16 30 0.86
17 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TAATTTATTATTAAAT
Found at i:9940 original size:16 final size:16
Alignment explanation
Indices: 9919--9949 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9909 TATTATACTA
*
9919 AATTAATCTTAATATT
1 AATTAATATTAATATT
9935 AATTAATATTAATAT
1 AATTAATATTAATAT
9950 AACATTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAATATTAATATT
Found at i:10126 original size:14 final size:14
Alignment explanation
Indices: 10089--10126 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
10079 ATATCTTATT
*
10089 ATTTATTATTAATA
1 ATTTATTAATAATA
10103 ATGTTA-TAATAATA
1 AT-TTATTAATAATA
10117 ATTTATTAAT
1 ATTTATTAAT
10127 TTGTAACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 3 0.14
14 15 0.71
15 3 0.14
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (14 bp):
ATTTATTAATAATA
Found at i:10208 original size:18 final size:18
Alignment explanation
Indices: 10174--10218 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
10164 TGACTTATAA
10174 TAATATTAACATATAATAT
1 TAATATT-ACATATAATAT
*
10193 TAATATTACGTATAATAT
1 TAATATTACATATAATAT
*
10211 TCATATTA
1 TAATATTA
10219 TATTGAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (18 bp):
TAATATTACATATAATAT
Found at i:10653 original size:179 final size:180
Alignment explanation
Indices: 10299--10948 Score: 730
Period size: 179 Copynumber: 3.6 Consensus size: 180
10289 TAAATTATTA
* * * * * *
10299 TTTTGTCATAAAACAATTGTATCAATTCATATAGGCTTATTTAAAATAAAAT-ATTACTAATTTA
1 TTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATAAAATAATTA--AATTAA
* * * * * * *
10363 TTAATA-TTCTAAAAATTAATGAGTAAGAGATTTAAAAAAATGAATCTGTTTACTGAACA-AGTT
64 TTAATATTTCTAAAATTTAATAAGTAA-AAATTT-AAAAAATAAATTTATTTTCTGAACATA-TT
* ** *
10426 TAAATAGTGATAACTATTTGAACAATTATCTATTTCAAATCA-TTATGACCTTTTG
126 CAAATAGTTCTGACTATTTGAACAATTATCTATTTCAAAT-AGTTATGACCTTTTG
* *
10481 TTTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTATTTCGAATAAAATAATTAAATTAATT
1 TTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATAAAATAATTAAATTAATT
*
10546 AATATTTC-AAAATTTAATAAGTAAAAATTTAAAAAATAAATTTATTTTCTGAACATATTCGAAT
66 AATATTTCTAAAATTTAATAAGTAAAAATTTAAAAAATAAATTTATTTTCTGAACATATTCAAAT
* *
10610 AGTTCTGACTATTTGAATAATTATTTATTTCAAATAGTTATGACCTTTTG
131 AGTTCTGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTG
* * * * * * *
10660 TTTTGTGATAAACCAATTATTTCTATCCATACAAGCTTATTCCGAATAAAATAATTAAATTTATT
1 TTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATAAAATAATTAAATTAATT
* * * * *
10725 AATA-TTCCAAAATTTAATAAGTAAAAATTTAAAAATTAAATTTGTTTTTTGAACATGTTCAAAT
66 AATATTTCTAAAATTTAATAAGTAAAAATTTAAAAAATAAATTTATTTTCTGAACATATTCAAAT
* *
10789 AGATCTGACTATTTGAACAATTATCTATTTCAAATAGTTATGAACTTTTG
131 AGTTCTGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTG
* * * * *
10839 TTTTG-CGATGAACCAATTGTTTCT-GTCTATATAAGCTTA-TTCAAAATAAAATAATACTAATT
1 TTTTGTC-ATAAAACAATTGTTTCTATTC-ATACAAGCTTATTTC-AAATAAAATAAT--TAAAT
*
10901 TAA-TAATATTTCTACAA-TTAATAAGTAAAAGATTTAAAAAAT-AATTTA
61 TAATTAATATTTCTAAAATTTAATAAGTAAAA-ATTTAAAAAATAAATTTA
10949 AATTAATATA
Statistics
Matches: 404, Mismatches: 52, Indels: 26
0.84 0.11 0.05
Matches are distributed among these distances:
178 7 0.02
179 269 0.67
180 29 0.07
181 47 0.12
182 48 0.12
183 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (180 bp):
TTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATAAAATAATTAAATTAATT
AATATTTCTAAAATTTAATAAGTAAAAATTTAAAAAATAAATTTATTTTCTGAACATATTCAAAT
AGTTCTGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTG
Found at i:13561 original size:12 final size:11
Alignment explanation
Indices: 13501--13560 Score: 72
Period size: 10 Copynumber: 5.6 Consensus size: 11
13491 TCATTTAATA
13501 ATTATAATTA-
1 ATTATAATTAT
13511 ATTATAATTAT
1 ATTATAATTAT
*
13522 TTTAT-ATTAT
1 ATTATAATTAT
*
13532 -TTATTATTAT
1 ATTATAATTAT
13542 ATTATAAATTAT
1 ATTAT-AATTAT
13554 ATTATAA
1 ATTATAA
13561 AAACTACAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
9 4 0.09
10 20 0.45
11 10 0.23
12 10 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTATAATTAT
Found at i:13605 original size:15 final size:13
Alignment explanation
Indices: 13537--13610 Score: 52
Period size: 13 Copynumber: 6.0 Consensus size: 13
13527 ATTATTTATT
13537 ATTAT-ATTATAA
1 ATTATAATTATAA
13549 ATTAT-ATTAT-A
1 ATTATAATTATAA
* *
13560 A--A-AACTACAA
1 ATTATAATTATAA
*
13570 AATATAATTATAA
1 ATTATAATTATAA
13583 ATTATAATTATGATA
1 ATTATAATTAT-A-A
*
13598 ATTGTAATTATAA
1 ATTATAATTATAA
13611 GTTTTTGACT
Statistics
Matches: 49, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
9 4 0.08
10 2 0.04
11 2 0.04
12 11 0.22
13 17 0.35
14 2 0.04
15 11 0.22
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (13 bp):
ATTATAATTATAA
Found at i:14014 original size:14 final size:14
Alignment explanation
Indices: 13997--14038 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
13987 AATGCAATTA
13997 TAATAATTTAAGAT
1 TAATAATTTAAGAT
*
14011 TAATTATTT-A-AT
1 TAATAATTTAAGAT
14023 TAATAAGTTTAAGAT
1 TAATAA-TTTAAGAT
14038 T
1 T
14039 TAAAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
12 7 0.30
13 4 0.17
14 9 0.39
15 3 0.13
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (14 bp):
TAATAATTTAAGAT
Found at i:14385 original size:180 final size:181
Alignment explanation
Indices: 14036--14481 Score: 451
Period size: 181 Copynumber: 2.5 Consensus size: 181
14026 TAAGTTTAAG
* * * * * * ** *
14036 ATTTAAAAAATAACTTTGTTTACCGAATAAGTTC-AATAGTTATGTCTATTTGAATAATTATTTA
1 ATTTAAAAAATAAATATATTTACCAAAAAAGTTCAAATACTTATAACTATTTGAATAATTATCTA
* * * **
14100 TTTCAAATCATTATGA-CTTTTTGCATTCCATAAAACAATTGTTTTTGTTCATACAAGCTTATTC
66 TTTCAAATCGTTATGACCTTTTTGCATTCCATAAAACAATTATATAAGTTCATACAAGCTTATTC
* * *
14164 AAATTAAAATAATATTAATTTATTAATATTCTGATAATTAAT-AATAAAAA
131 AAATTAAAATAATACTAATTTATTAATATTCTAAAAATTAATGAATAAAAA
* * * * *
14214 ATTTTAAAAATAAATATGTTTACCAAGAAAGTTCAAATACTTTTAACTATTTGAATATTTATCTA
1 ATTTAAAAAATAAATATATTTACCAAAAAAGTTCAAATACTTATAACTATTTGAATAATTATCTA
* *
14279 TTTCAAATCGTTATGACCAATTGTTT-CA-T-CATAAAACAATTATATAAGTTCATATAGGCTTA
66 TTTCAAATCGTTATGACC--TT-TTTGCATTCCATAAAACAATTATATAAGTTCATACAAGCTTA
* * * * *
14341 TTTGAAA-TAAAATGATACTAATTTATTAATATT-TCAAAAATTAATGAGTAAGAG
128 -TTCAAATTAAAATAATACTAATTTATTAATATTCT-AAAAATTAATGAATAAAAA
* * * * * *
14395 ATTTAAAAAATGAATCTATTTATCAAAAAAGTTCAAATAGTTATGACTATTTGAACAAATT-TCT
1 ATTTAAAAAATAAATATATTTACCAAAAAAGTTCAAATACTTATAACTATTTGAA-TAATTATCT
*
14459 ATTTCAAATCGTTATGACGTTTT
65 ATTTCAAATCGTTATGACCTTTT
14482 GTTTTGTCAT
Statistics
Matches: 220, Mismatches: 39, Indels: 18
0.79 0.14 0.06
Matches are distributed among these distances:
178 30 0.14
179 42 0.19
180 60 0.27
181 78 0.35
182 7 0.03
183 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (181 bp):
ATTTAAAAAATAAATATATTTACCAAAAAAGTTCAAATACTTATAACTATTTGAATAATTATCTA
TTTCAAATCGTTATGACCTTTTTGCATTCCATAAAACAATTATATAAGTTCATACAAGCTTATTC
AAATTAAAATAATACTAATTTATTAATATTCTAAAAATTAATGAATAAAAA
Found at i:15010 original size:25 final size:25
Alignment explanation
Indices: 14978--15044 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
14968 AAAATTACTA
14978 ATATTATAAAAATATTATAATTATT
1 ATATTATAAAAATATTATAATTATT
*
15003 ATATTATAATAATA-T-TAATTATT
1 ATATTATAAAAATATTATAATTATT
* *
15026 AGTAATTTTATAAATATTA
1 A-T-ATTATAAAAATATTA
15045 ATATAATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
23 9 0.26
24 2 0.06
25 22 0.65
26 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (25 bp):
ATATTATAAAAATATTATAATTATT
Found at i:15019 original size:11 final size:11
Alignment explanation
Indices: 14976--15019 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
14966 CTAAAATTAC
14976 TAATATTATAA
1 TAATATTATAA
*
14987 AAATATTATAA
1 TAATATTATAA
14998 TTATTATATTATAA
1 -TA--ATATTATAA
15012 TAATATTA
1 TAATATTA
15020 ATTATTAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 16 0.57
12 1 0.04
13 2 0.07
14 9 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAATATTATAA
Found at i:15160 original size:13 final size:14
Alignment explanation
Indices: 15127--15221 Score: 58
Period size: 13 Copynumber: 7.0 Consensus size: 14
15117 TATTAAACTG
15127 TTAATAATAAATAA
1 TTAATAATAAATAA
15141 TCATAATAATAAA-AA
1 T--TAATAATAAATAA
*
15156 TTAATCAGTAAATAA
1 TTAAT-AATAAATAA
* ** *
15171 TTAA-ATTTTATTA
1 TTAATAATAAATAA
*
15184 TTAA-AATCAATAA
1 TTAATAATAAATAA
15197 -TAAT--TAAATAA
1 TTAATAATAAATAA
*
15208 TTAATAAAAAATAA
1 TTAATAATAAATAA
15222 AATTAATATT
Statistics
Matches: 62, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
11 6 0.10
12 7 0.11
13 18 0.29
14 12 0.19
15 9 0.15
16 10 0.16
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (14 bp):
TTAATAATAAATAA
Found at i:16097 original size:16 final size:17
Alignment explanation
Indices: 16073--16130 Score: 56
Period size: 16 Copynumber: 3.8 Consensus size: 17
16063 GATTTATTTG
* *
16073 TATTGATTATAA-TCAT
1 TATTAATTATAATTAAT
16089 TATTAATTATAATTAAT
1 TATTAATTATAATTAAT
16106 TATTAA-TAT--TT-AT
1 TATTAATTATAATTAAT
16119 TA-TAATTATAAT
1 TATTAATTATAAT
16131 AGAAAATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 1 0.03
16 14 0.39
17 9 0.25
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (17 bp):
TATTAATTATAATTAAT
Found at i:16177 original size:9 final size:10
Alignment explanation
Indices: 16163--16222 Score: 65
Period size: 9 Copynumber: 6.1 Consensus size: 10
16153 TTAATTGGAT
16163 TATTAAAT-A
1 TATTAAATAA
16172 TATT-AATAA
1 TATTAAATAA
16181 TATT-AATAA
1 TATTAAATAA
16190 TATTAATATAA
1 TATTAA-ATAA
16201 TATTATTAATAA
1 TATTA--AATAA
16213 TATT-AATAA
1 TATTAAATAA
16222 T
1 T
16223 TAATTCAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
8 3 0.07
9 24 0.52
10 1 0.02
11 9 0.20
12 8 0.17
13 1 0.02
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TATTAAATAA
Found at i:16207 original size:23 final size:23
Alignment explanation
Indices: 16175--16220 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
16165 TTAAATATAT
16175 TAATAATATTAATAATATTAATA
1 TAATAATATTAATAATATTAATA
*
16198 TAATATTATTAATAATATTAATA
1 TAATAATATTAATAATATTAATA
16221 ATTAATTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
TAATAATATTAATAATATTAATA
Found at i:16811 original size:26 final size:26
Alignment explanation
Indices: 16764--16813 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16754 TATAATATAA
* *
16764 TAATTGTCATAATTTATTATTATTTT
1 TAATTGTCACAATATATTATTATTTT
16790 TAATTGT-ACAATATATTAATTATT
1 TAATTGTCACAATATATT-ATTATT
16814 ATTGGTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (26 bp):
TAATTGTCACAATATATTATTATTTT
Found at i:16812 original size:29 final size:26
Alignment explanation
Indices: 16764--16816 Score: 70
Period size: 29 Copynumber: 1.9 Consensus size: 26
16754 TATAATATAA
*
16764 TAATTGTCATAATTTATTATTATTTT
1 TAATTGTCATAATTAATTATTATTTT
16790 TAATTGTACAATATATTAATTATTATT
1 TAATTGT-C-ATA-ATTAATTATTATT
16817 GGTTAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 1 0.04
28 3 0.13
29 12 0.52
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.57
Consensus pattern (26 bp):
TAATTGTCATAATTAATTATTATTTT
Found at i:17278 original size:14 final size:14
Alignment explanation
Indices: 17261--17318 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
17251 TTATTAAACC
17261 ATTATAATTATTAT
1 ATTATAATTATTAT
*
17275 ATTATATATTATATTT
1 ATTATA-ATTAT-TAT
17291 ATTATAA-TA-TA-
1 ATTATAATTATTAT
**
17302 ATTATAAAAATTAT
1 ATTATAATTATTAT
17316 ATT
1 ATT
17319 TTATAATCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
11 7 0.19
12 2 0.06
13 2 0.06
14 11 0.31
15 6 0.17
16 8 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATTATAATTATTAT
Found at i:17385 original size:26 final size:26
Alignment explanation
Indices: 17356--17492 Score: 65
Period size: 24 Copynumber: 5.3 Consensus size: 26
17346 ATTTCCTATA
*
17356 AATATTATTAATTAATTAATAATACT
1 AATATTATTAATTAATTAATAATAAT
* * *
17382 AATAGTATTATGTTCAATTATTAATAGAT
1 AATATTATTA-ATT-AATTAATAATA-AT
* *
17411 ACAT-TTATTAA-TAATTTATAATTATT
1 A-ATATTATTAATTAATTAATAA-TAAT
*
17437 AA-A-TATT-ATTAAATT-ATAATTAT
1 AATATTATTAATT-AATTAATAATAAT
* * * *
17460 AATATTA--AATTGATAAATTATAAA
1 AATATTATTAATTAATTAATAATAAT
17484 AATATTATT
1 AATATTATT
17493 TATCTAAAAT
Statistics
Matches: 81, Mismatches: 16, Indels: 28
0.65 0.13 0.22
Matches are distributed among these distances:
23 7 0.09
24 25 0.31
25 7 0.09
26 18 0.22
27 5 0.06
28 10 0.12
29 7 0.09
30 2 0.02
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (26 bp):
AATATTATTAATTAATTAATAATAAT
Found at i:17453 original size:24 final size:22
Alignment explanation
Indices: 17416--17467 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 22
17406 TAGATACATT
*
17416 TATTAATAATTTATAATTATTAAA
1 TATTAATAAATTATAATTA-T-AA
*
17440 TATTATTAAATTATAATTATAA
1 TATTAATAAATTATAATTATAA
17462 TATTAA
1 TATTAA
17468 ATTGATAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.28
23 1 0.04
24 17 0.68
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTAATAAATTATAATTATAA
Found at i:17467 original size:19 final size:21
Alignment explanation
Indices: 17443--17482 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
17433 TATTAAATAT
17443 TATTAAATT-AT-AATTATAA
1 TATTAAATTGATAAATTATAA
17462 TATTAAATTGATAAATTATAA
1 TATTAAATTGATAAATTATAA
17483 AAATATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.47
20 2 0.11
21 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (21 bp):
TATTAAATTGATAAATTATAA
Found at i:17492 original size:27 final size:29
Alignment explanation
Indices: 17431--17492 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 29
17421 ATAATTTATA
* **
17431 ATTATTAAATATTATTAAATTATAATTAT
1 ATTATTAAATATGATTAAATTATAAAAAT
*
17460 AATATTAAAT-TGA-TAAATTATAAAAAT
1 ATTATTAAATATGATTAAATTATAAAAAT
17487 ATTATT
1 ATTATT
17493 TATCTAAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 17 0.61
28 2 0.07
29 9 0.32
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
ATTATTAAATATGATTAAATTATAAAAAT
Found at i:17635 original size:34 final size:33
Alignment explanation
Indices: 17590--17692 Score: 102
Period size: 34 Copynumber: 3.0 Consensus size: 33
17580 TTTATGTATT
17590 AATT-ATTATAATTTATCAATTTAATATTAAA-C
1 AATTAATTATAATTTAT-AATTTAATATTAAATC
* *
17622 AATATAATTATAATTTAATAATTTATTATTAAATT
1 AAT-TAATTATAATTT-ATAATTTAATATTAAATC
* *
17657 AATTAGTATATTAATTGATTAATTTAATATTAAATC
1 AATTAAT-TA-TAATTTA-TAATTTAATATTAAATC
17693 TATTTTGATT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
32 3 0.05
33 1 0.02
34 26 0.45
35 8 0.14
36 20 0.34
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.49
Consensus pattern (33 bp):
AATTAATTATAATTTATAATTTAATATTAAATC
Found at i:17661 original size:12 final size:12
Alignment explanation
Indices: 17641--17691 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
17631 ATAATTTAAT
*
17641 AATTTATTATTA
1 AATTAATTATTA
*
17653 AATTAATTAGTA
1 AATTAATTATTA
*
17665 TATTAATTGATTA
1 AATTAATT-ATTA
*
17678 ATTTAA-TATTA
1 AATTAATTATTA
17689 AAT
1 AAT
17692 CTATTTTGAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
11 6 0.19
12 18 0.58
13 7 0.23
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (12 bp):
AATTAATTATTA
Found at i:18168 original size:16 final size:16
Alignment explanation
Indices: 18147--18177 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18137 TATTATACTA
*
18147 AATTAATCTTAATATT
1 AATTAATATTAATATT
18163 AATTAATATTAATAT
1 AATTAATATTAATAT
18178 AACATTAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAATATTAATATT
Found at i:18448 original size:18 final size:18
Alignment explanation
Indices: 18414--18458 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
18404 TGACTTATAA
18414 TAATATTAACATATAATAT
1 TAATATT-ACATATAATAT
*
18433 TAATATTACGTATAATAT
1 TAATATTACATATAATAT
*
18451 TCATATTA
1 TAATATTA
18459 TATTGAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (18 bp):
TAATATTACATATAATAT
Found at i:19237 original size:181 final size:181
Alignment explanation
Indices: 18915--19240 Score: 411
Period size: 181 Copynumber: 1.8 Consensus size: 181
18905 AATACTGAAA
* * * * * * *
18915 AATTGTTCAAATAGTCATAACTATTTGAATTTGTTCGATAAATAGATTTATTTTTTAAATCTCTT
1 AATTATTCAAATAGTCATAACTATTTAAACTTATTCAATAAACAGATTTATTTTTAAAATCTCTT
* * * ***
18980 ACTCATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCCTACATGAACT
66 ACTCATTAATTGTTGAAATATTAATAAATTAATATTAGTTTAAACCAAATAAGCCTACATGAACT
*
19045 GATACAATTGTTTTATGATGAAACAAAAGGTCATAACCATTTAAAATAGAT
131 GAAACAATTGTTTTATGATGAAACAAAAGGTCATAACCATTTAAAATAGAT
* * * * *
19096 AATTATTCAAATAGTTATGACTATTTAAACTTATTCAATAAACATATTTATTTTTAAAATTTTTT
1 AATTATTCAAATAGTCATAACTATTTAAACTTATTCAATAAACAGATTTATTTTTAAAATCTCTT
* * * **
19161 ACTTATTAATTGTTGAAATATTAATAAATTAATATTAGTTTAAACCGAATAAGCTTGTATGAA-T
66 ACTCATTAATTGTTGAAATATTAATAAATTAATATTAGTTTAAACCAAATAAGCCTACATGAACT
*
19225 GAAAATAATTGTTTTA
131 G-AAACAATTGTTTTA
19241 GGACAAAAAA
Statistics
Matches: 119, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
180 2 0.02
181 117 0.98
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (181 bp):
AATTATTCAAATAGTCATAACTATTTAAACTTATTCAATAAACAGATTTATTTTTAAAATCTCTT
ACTCATTAATTGTTGAAATATTAATAAATTAATATTAGTTTAAACCAAATAAGCCTACATGAACT
GAAACAATTGTTTTATGATGAAACAAAAGGTCATAACCATTTAAAATAGAT
Found at i:19952 original size:175 final size:174
Alignment explanation
Indices: 19306--21814 Score: 846
Period size: 180 Copynumber: 14.0 Consensus size: 174
19296 AAATCTTTTA
** ** * * *
19306 CTTATTAATTGTTTGAATATTAATAAATTTTTATTATTTTAATT-GAAATAAGCTTGTATGAATA
1 CTTATTAATT-TTAAAATATTAATAAATTAGTATTATTTT-ATTCTAAATAAACTTGTATGAACA
* ** * * ** * * ** *
19370 GAAAAAATTACTTTATGACAAAACAAAAGGTTACAGCGATTTGATATAGGTAATTGTTGAAATAG
64 GAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGAATTGAAATAAATAATTGTTCAAATAG
* * * *
19435 TCATAACTATTTGAACTTA-TTCGATAAACAGATTTAGTTTTAAATCTCTT
128 TCATAACTATTTGAAC-TAGTT-GGTAAATAGATTTATTTTTAAA-ATC-T
* ** * * * *
19485 ACTTATTAATTTTTGAAATATTAATAAATTAAAATTATGTTATTCCT-AGTAAGCTTGTACGAAC
1 -CTTATTAA-TTTTAAAATATTAATAAATTAGTATTATTTTATT-CTAAATAAACTTGTATGAAC
* * * * * * * *
19549 AAAAATAAATT-TTTTATGACAAAATAAAAGGTTATAA-CAATTTAAAATAGATAATTATTCAAA
63 AGAAA-CAATTGTTTTATGAC-AAACAAAAGGTCATAATGAA-TTGAAATAAATAATTGTTCAAA
* * * * ** ** * *
19612 CAGTCATAACTATTTGCACTGGTCAAGCCAACCA-ATTCATTTTTTAAATC-
125 TAGTCATAACTATTTGAACTAGT--TGGTAAATAGATTTATTTTTAAAATCT
* * *
19662 CATTACACATTAATTTTTAGAATATTAATAAATTAGCATTATTTTATTCTAAATAAGAC-TATAT
1 C-TT----ATTAA-TTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAA-ACTTGTAT
* * * *
19726 CAATAGAAACAATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAAATAATTGTTCA
59 GAACAGAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGAATTGAAATAAATAATTGTTCA
* ** *
19791 AATTGTTTTAACTAATTGAACTAGTTTGGTAAATAGATTTATTTTTAAAATCT
123 AATAGTCATAACTATTTGAACTAG-TTGGTAAATAGATTTATTTTTAAAATCT
* * * * * *
19844 CTTATTGATTTTCAAAATATTAATCAATTAATATTATTATATTCTAAACAAACTTATATGAACA-
1 CTTATTAATTTT-AAAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAACAG
* * * *
19908 AAACATTTGTTTTATGACAAACAAAAGGTCATAATGAATTGAAATAAATAATTATTCATATATTC
65 AAACAATTGTTTTATGACAAACAAAAGGTCATAATGAATTGAAATAAATAATTGTTCAAATAGTC
* * * * *
19973 TTAAGTATTTAAAACTAGATTGATAAACA-ATTTAGTTTTT-AAATAC-
130 ATAACTATTT-GAACTAG-TTGGTAAATAGATTTA-TTTTTAAAAT-CT
* * * ** * *
20019 CTTAGTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTATATAATTTTGTACGAACAA
1 CTTATTAA-TTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAACAG
** * ** * * * * *
20084 AAATTATTATTTTACAATAAAACAAAATGTCATAA-CAATTTGAAATAGATAATAGTTCAAATAG
65 AAACAATTGTTTTATGA-CAAACAAAAGGTCATAATGAA-TTGAAATAAATAATTGTTCAAATAG
* * * *
20148 ACATAACTATTTGAACTTGTT--T-AGTA-A---A-TTTT-CAA-CT
128 TCATAACTATTTGAACTAGTTGGTAAATAGATTTATTTTTAAAATCT
* * * *
20185 C--ATTAATTTTATAATATTAATAAATTATTATTATTTTATTCTAAATAAAATTGTATGAATAGA
1 CTTATTAATTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAACAGA
* * *
20248 AACAATTATTTTATGACCAAACAAAAGATCATAA-CAATTTGAAATAAAATAATTGTTCAAATAG
66 AACAATTGTTTTATGA-CAAACAAAAGGTCATAATGAA-TTGAAAT-AAATAATTGTTCAAATAG
* * * * *
20312 TCATAACTATTTGAACTCA-CTCGTTAATCAGATTTATTTTTTAAATTTTTT
128 TCATAACTATTTGAACT-AGTTGGTAAAT-AGATTTA-TTTTTAAA--ATCT
* *
20363 ACTTATTAATTTTAGGAATA--AATAAATTAGTATTATTTTATTCCAAATAAGA-TTGTATGAAC
1 -CTTATTAATTTTA-AAATATTAATAAATTAGTATTATTTTATTCTAAATAA-ACTTGTATGAAC
* * * ** *
20425 AGAAAAAATTGGTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGCTAATTATTCAAATA
63 AGAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGAATTGAAATAAATAATTGTTCAAATA
* * *
20490 GTTATAACTATTTGAAC-ATGTTCAGAAAATAGATTTATTTTTAAAAT-T
127 GTCATAACTATTTGAACTA-GTT-GGTAAATAGATTTATTTTTAAAATCT
* * * * *
20538 TTTATTTTTTAATTTCTAGAATATTAATAAATTTA-TATTATTTTATTCGAAATAATCTTGCATG
1 CTTA----TTAATTT-TAAAATATTAATAAA-TTAGTATTATTTTATTCTAAATAAACTTGTATG
* ** * * * * * *
20602 ATCAG-AATGATTATTTTATGATAAAACAAAAGGTCATAATG-TTTGAAATAGATAATCGTTCAG
60 AACAGAAACAATTGTTTTATGA-CAAACAAAAGGTCATAATGAATTGAAATAAATAATTGTTCAA
* * ** * ** * * * * *
20665 ATAATCATAACAAAAT-ATTCT--TTTTTATGACAGATTCTTTTTTTTAATTCT
124 ATAGTCATAACTATTTGA-ACTAGTTGGTA-AATAGATT-TATTTTTAAAATCT
* *** * * *
20716 CATTCTCATTTATTCTCGGAATATTAATAAGTTAGTATTATTTTACTTC-AAAT-AAGTCTATAT
1 C--T-T-ATTAATT-TTAAAATATTAATAAATTAGTATTATTTTA-TTCTAAATAAACT-TGTAT
* ** * *
20779 GAACTGAAATGATTGTTTTATTACAAA-AGAAATGGTCATAACTAAGAGATTTAAA-AAATAA-T
59 GAACAGAAACAATTGTTTTATGACAAACA-AAA-GGTCATAA-T--GA-ATTGAAATAAATAATT
* * * * * *
20841 -TTGAAATAG--ATAATTATTCAAATAGTCATATCTATTTGAACTGGTTTAGTAAATAATT-TTA
118 GTTCAAATAGTCATAACTATT----T-G--A-A-CTA---G--TTGG-TAAATAGAT--TTATT-
*
20902 TTTTTTAAATCT
165 TT--TAAAATCT
* ** * * * * ** * **
20914 CTTATTAATTCTTGAA-A-T-ATTAA-TA-AATTAGTATTATTTTATTTCGAA--TAAACTTGTA
1 CTTATTAATTTTAAAATATTAATAAATTAGTATTA-TTTTATTCTAAAT-AAACTTGTA--TG-A
** * * * * * * * *
20972 TATTGAAAAACAAATGTTTTATGACAAAACACAAGGTAATAACGATTTGAAATAGATAGTTGTTC
61 -ACAGAAACA-AT-TGTTTTATGACAAA-CAAAAGGTCATAATGAATTGAAATAAATAATTGTTC
* * * ** * * * *
21037 AAATGGCCATAATTATTCAAACTGATTTAGG-AAATTGATTTATTTTTTAAATAT
122 AAATAGTCATAACTATTTGAACT-AGTT-GGTAAATAGATTTATTTTTAAAATCT
* ** * * * ** * *
21091 CTTTTTAATTTTTGTAATATTAATGAAGTAGTATTATTTTATTTTGGATAAACTTTTATGAGCTA
1 CTTATTAA-TTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAAC-A
* * * * * *
21156 -AAATAATTATTTTATGACAAAACAAAAGGTCATAAAGATTTTAAATAGATAATTGTTCAAATAG
64 GAAACAATTGTTTTATGAC-AAACAAAAGGTCATAATGAATTGAAATAAATAATTGTTCAAATAG
* ** * *
21220 TCATAATTATTTGAACTTCTTCGGTAAATAAATTTATCTTTTCAAATCTCTT
128 TCATAACTATTTGAACTAGTT-GGTAAATAGATTTAT-TTTT-AAA-ATC-T
** * * * *
21272 GCTTATTAATTTTTTGAATGTTAATAAATTAATATTATTTTATT-TATAATAACCTTGTATAAAC
1 -CTTATTAA-TTTTAAAATATTAATAAATTAGTATTATTTTATTCTA-AATAAACTTGTATGAAC
* * * * * * * * * * * *
21336 TGAAAGAATTATTATATGACCAAATAAAAGATTAAAACGATTTTATGAAA-AAGATAATTATTCT
63 AGAAACAATTGTTTTATGA-CAAACAAAAGGTCATAATGA--AT-TGAAATAA-ATAATTGTTCA
* * * * * * * *
21400 AATAAT-TTAACCATTTAAACT-GATTCAGTAAACAAATTTATTTTTTAAATCT
123 AATAGTCATAACTATTTGAACTAG-TT-GGTAAATAGATTTATTTTTAAAATCT
* * * *
21452 CTTACTTATTAGTTTTCAAA-ATTATTAAATTAGTATTATTTT-TATCCAAATAAGCTTGTATGA
1 CTTA-TTA--A-TTTTAAAATATTAATAAATTAGTATTATTTTAT-TCTAAATAAACTTGTATGA
* * * * ** *
21515 ACA-AAACAATTGTTTTATGTTA-AAAGAAAAGGTCATAACGATTTGAAATAGATAATCATTCAT
61 ACAGAAACAATTGTTTTATG--ACAAACAAAAGGTCATAATGAATTGAAATAAATAATTGTTCAA
* * * * **
21578 AGAGTCTTAACTATTTGAACTAGTTTGATAATTAGATTTATTTTTTAATTTTCTT
124 ATAGTCATAACTATTTGAACTAG-TTGGTAAATAGATTTA-TTTTTAA-AATC-T
* * * * *
21633 GGTTATTAAGTTTTAAAATATTATTAAATTAGTATTATTTTATTCTAAATAAAATAGTAGGAACA
1 -CTTATTAA-TTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAACA
* * * * * * * * * * *
21698 GAACCAATTGTTTGATGATAAAATAAAATGTTATAACGATTTGAACTAAATAATTATTGAAATAG
64 GAAACAATTGTTTTATGA-CAAACAAAAGGTCATAATGAATTGAAATAAATAATTGTTCAAATAG
* * * * *
21763 TCAAAACTATTTGAAATGGTTTGGTAAGTAGATTT-TCTTTTTAAATCT
128 TCATAACTATTTGAACTAG-TTGGTAAATAGATTTAT-TTTTAAAATCT
21811 CTTA
1 CTTA
21815 CAAAGTTATT
Statistics
Matches: 1754, Mismatches: 402, Indels: 349
0.70 0.16 0.14
Matches are distributed among these distances:
163 85 0.05
164 37 0.02
165 1 0.00
166 2 0.00
167 8 0.00
168 1 0.00
169 2 0.00
172 4 0.00
173 1 0.00
174 7 0.00
175 109 0.06
176 79 0.05
177 211 0.12
178 135 0.08
179 147 0.08
180 326 0.19
181 290 0.17
182 113 0.06
183 19 0.01
184 35 0.02
185 18 0.01
186 2 0.00
187 4 0.00
188 12 0.01
189 8 0.00
190 10 0.01
191 10 0.01
192 8 0.00
193 11 0.01
194 26 0.01
195 18 0.01
196 6 0.00
197 1 0.00
198 8 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (174 bp):
CTTATTAATTTTAAAATATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTATGAACAGA
AACAATTGTTTTATGACAAACAAAAGGTCATAATGAATTGAAATAAATAATTGTTCAAATAGTCA
TAACTATTTGAACTAGTTGGTAAATAGATTTATTTTTAAAATCT
Found at i:20219 original size:163 final size:164
Alignment explanation
Indices: 20034--20328 Score: 423
Period size: 163 Copynumber: 1.8 Consensus size: 164
20024 TAATTTTTGA
* ** **
20034 AATATTAATAAATTAGTATTATTTTATTCTATATAATTTTGTACGAACAAAAATTATTATTTTAC
1 AATATTAATAAATTAGTATTATTTTATTCTAAATAAAATTGTACGAACAAAAACAATTATTTTAC
* *
20099 AATAAAACAAAATG-TCATAACAATTTGAAAT-AGATAATAGTTCAAATAGACATAACTATTTGA
66 AACAAAACAAAA-GATCATAACAATTTGAAATAAAATAATAGTTCAAATAGACATAACTATTTGA
20162 ACTTGTTTAGTAAATTTTCAACTCATTAATTTTAT
130 ACTTGTTTAGTAAATTTTCAACTCATTAATTTTAT
* * * * *
20197 AATATTAATAAATTATTATTATTTTATTCTAAATAAAATTGTATGAATAGAAACAATTATTTTAT
1 AATATTAATAAATTAGTATTATTTTATTCTAAATAAAATTGTACGAACAAAAACAATTATTTTAC
* * * *
20262 GACCAAACAAAAGATCATAACAATTTGAAATAAAATAATTGTTCAAATAGTCATAACTATTTGAA
66 AACAAAACAAAAGATCATAACAATTTGAAATAAAATAATAGTTCAAATAGACATAACTATTTGAA
20327 CT
131 CT
20329 CACTCGTTAA
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
162 1 0.01
163 81 0.71
164 32 0.28
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.39
Consensus pattern (164 bp):
AATATTAATAAATTAGTATTATTTTATTCTAAATAAAATTGTACGAACAAAAACAATTATTTTAC
AACAAAACAAAAGATCATAACAATTTGAAATAAAATAATAGTTCAAATAGACATAACTATTTGAA
CTTGTTTAGTAAATTTTCAACTCATTAATTTTAT
Found at i:20401 original size:180 final size:177
Alignment explanation
Indices: 20172--21777 Score: 861
Period size: 177 Copynumber: 8.9 Consensus size: 177
20162 ACTTGTTTAG
** * * * *
20172 TAAATTTTCAACTCATTAATTTTATAATATTAATAAATTATTATTATTTTATTCTAAATAAAATT
1 TAAATTTTTTACTTATTAATTTTAGAATA-TAATAAATTAGTATTATTTTATTCTAAATAAACTT
* * * *
20237 GTATGAATAGAAACAATTATTTTATGACCAAACAAAAGATCATAACAATTTGAAATAAAATAATT
65 GTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAAT-AGATAATT
* * *
20302 GTTCAAATAGTCATAACTATTTGAACTCACTCGTTAATCAGATTTATTTTT
129 ATTCAAATAGTCATAACTATTTGAACT-ATTCGTAAAT-AGATTTATTTTT
*
20353 TAAATTTTTTACTTATTAATTTTAGGAATA-AATAAATTAGTATTATTTTATTCCAAATAAGA-T
1 TAAATTTTTTACTTATTAATTTTA-GAATATAATAAATTAGTATTATTTTATTCTAAATAA-ACT
* * * ** *
20416 TGTATGAACAGAAAAAATTGGTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGCTAATT
64 TGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATT
* * *
20481 ATTCAAATAGTTATAACTATTTGAACATGTTCAGAAAATAGATTTA-TTTT
129 ATTCAAATAGTCATAACTATTTGAAC-TATTC-GTAAATAGATTTATTTTT
* * * * *
20531 TAAAATTTTTATTTTTTAATTTCTAGAATATTAATAAATTTA-TATTATTTTATTCGAAATAATC
1 TAAATTTTTTACTTATTAATTT-TAGAATA-TAATAAA-TTAGTATTATTTTATTCTAAATAAAC
* ** * * **
20595 TTGCATG-ATCAG-AATGATTATTTTATGATAAAACAAAAGGTCATAA-TGTTTGAAATAGATAA
63 TTGTATGAAT-AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAA
** * * * ** * ** * *
20657 TCGTTCAGATAATCATAACAAAAT-ATTCT-TTTTTATGACAGATTCT-TTTTT
127 TTATTCAAATAGTCATAACTATTTGA-ACTATTCGTA-AATAGATT-TATTTTT
* * * * ** *
20708 TTAATTCTCATT-CTCATTTATTCTCGGAATATTAATAAGTTAGTATTATTTTACTTC-AAAT-A
1 TAAATT-T-TTTACTTATTAATT-TTAGAATA-TAATAAATTAGTATTATTTTA-TTCTAAATAA
* * ** * * *
20770 AGTCTATATGAACT-GAAATGATTGTTTTATTACAAAAGAAATGGTCATAACTAAGAGATTTAAA
61 ACT-TGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC-------------
* * *
20834 AAATAATTTGAAATAGATAATTATTCAAATAGTCATATCTATTTGAACTGGTTTAGTAAATA-AT
111 ----AATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT--ATTCGTAAATAGA-
20898 TTTATTTTT
169 TTTATTTTT
* *
20907 TAAA---TCT-CTTATTAATTCTT-GAAATATTAATAAATTAGTATTATTTTATT-TCGAATAAA
1 TAAATTTTTTACTTATTAATT-TTAG-AATA-TAATAAATTAGTATTATTTTATTCT-AAATAAA
* * * * * *
20966 CTTGTAT-ATTGAAAAACAAATGTTTTATGACAAAACACAAGGTAATAACGATTTGAAATAGATA
62 CTTGTATGAAT-AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATA
* * * * * ** * * *
21030 GTTGTTCAAATGGCCATAATTATTCAAACTGATTTAGGAAATTGATTTATTTTT
126 ATTATTCAAATAGTCATAACTATTTGAACT-A-TTCGTAAATAGATTTATTTTT
* * * * * * **
21084 TAAA---TAT-CTTTTTAATTTTTGTAATATTAATGAAGTAGTATTATTTTATTTTGGATAAACT
1 TAAATTTTTTACTTATTAATTTTAG-AATA-TAATAAATTAGTATTATTTTATTCTAAATAAACT
* * * * *
21145 TTTATGAGCTA-AAATAATTATTTTATGACAAAACAAAAGGTCATAA-AGATTTTAAATAGATAA
64 TGTATGA-ATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA-ATTTGAAATAGATAA
* * * *
21208 TTGTTCAAATAGTCATAATTATTTGAACTTCTTCGGTAAATAAATTTATCTTTT
127 TTATTCAAATAGTCATAACTATTTGAAC-TATTC-GTAAATAGATTTAT-TTTT
* * * * * * * *
21262 CAAATCTCTTGCTTATTAATTTTTTGAATGTTAATAAATTAATATTATTTTATT-TATAATAACC
1 TAAATTTTTTACTTATTAA-TTTTAGAAT-ATAATAAATTAGTATTATTTTATTCTA-AATAAAC
* * * * * * * * * * *
21326 TTGTATAAACT-GAAAGAATTATTATATGACCAAATAAAAGATTAAAACGATTTTATGAAAAAGA
63 TTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC-A-ATT-TGAAATAGA
* * * * * * *
21390 TAATTATTCTAATAAT-TTAACCATTTAAACTGATTCAGTAAACAAATTTATTTTT
124 TAATTATTCAAATAGTCATAACTATTTGAACT-ATTC-GTAAATAGATTTATTTTT
* * * * * * *
21445 TAAATCTCTTACTTATTAGTTTTCAAAAT-TATTAAATTAGTATTATTTT-TATCCAAATAAGCT
1 TAAATTTTTTACTTATTAATTTT-AGAATATAATAAATTAGTATTATTTTAT-TCTAAATAAACT
* ** * * *
21508 TGTATGAACA-AAACAATTGTTTTATGTTAAAAGAAAAGGTCATAACGATTTGAAATAGATAATC
64 TGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATT
* * * * *
21572 ATTCATAGAGTCTTAACTATTTGAACTAGTTTGATAATTAGATTTATTTTT
129 ATTCAAATAGTCATAACTATTTGAACTA-TTCG-TAAATAGATTTATTTTT
** * * *
21623 T-AATTTTCTTGGTTATTAAGTTTTAAAATATTATTAAATTAGTATTATTTTATTCTAAATAAAA
1 TAAATTTT-TTACTTATTAA-TTTTAGAATA-TAATAAATTAGTATTATTTTATTCTAAATAAAC
* * * * * * * * * * * *
21687 TAGTAGGAACAGAACCAATTGTTTGATGATAAAATAAAATGTTATAACGATTTGAACTAAATAAT
63 TTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAAT
* *
21752 TATTGAAATAGTCAAAACTATTTGAA
128 TATTCAAATAGTCATAACTATTTGAA
21778 ATGGTTTGGT
Statistics
Matches: 1100, Mismatches: 236, Indels: 178
0.73 0.16 0.12
Matches are distributed among these distances:
175 1 0.00
176 13 0.01
177 226 0.21
178 153 0.14
179 112 0.10
180 181 0.16
181 126 0.11
182 79 0.07
183 30 0.03
184 29 0.03
185 20 0.02
192 1 0.00
193 4 0.00
194 71 0.06
195 3 0.00
197 32 0.03
198 3 0.00
199 12 0.01
200 4 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.42
Consensus pattern (177 bp):
TAAATTTTTTACTTATTAATTTTAGAATATAATAAATTAGTATTATTTTATTCTAAATAAACTTG
TATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTAT
TCAAATAGTCATAACTATTTGAACTATTCGTAAATAGATTTATTTTT
Found at i:20461 original size:343 final size:345
Alignment explanation
Indices: 19287--21777 Score: 1039
Period size: 361 Copynumber: 7.0 Consensus size: 345
19277 GTAATCAAAG
* **
19287 TTATTTTTTAAATCTTTTACTTATTAATTGTT-TGAATATTAATAAATTTTTATTATTTTAATT-
1 TTATTTTTTAAA---TTTACTTATTAATT-TTAGGAATA-TAATAAATTAGTATTATTTT-ATTC
* * * ** * * ** *
19350 GAAATAAGCTTGTATGAATAGAAAAAATTACTTTATGACAAAACAAAAGGTTACAGCGATTTGAT
60 TAAATAAGATTGTATGAACAGAAAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAA
* * * * * * *
19415 ATAGGTAATTGTTGAAATAGTCATAACTATTTGAACTTATTCGATAAACAGATTTAGTTTTAAAT
125 ATAGATAATAGTTCAAATAGTTATAACTATTTGAACTTGTT-G-TAAATAGA--TATTTTTAAA-
* ** * ** ** *
19480 CTCTTACTTATTAATTTTTGAAATATTAATAAATTAAAATTATGT-TATTCCT-AGTAAGCTTGT
185 ATC-T-C-TATTAATTTTCAAAATATTAATAAATTAATATTAT-TATATT-CTAAACAAAATTAT
* * * * * * *
19543 ACGAACAAAAATAAATTTTTTATGACAAAATAAAAGGTTATAACAATTTAAAATAGATAATTATT
245 ATGAAC-AAAA-CAATTTTTTATGACCAAACAAAAGGTCATAACAATTTGAAATAAATAATTATT
* * ** ** *
19608 CAAACAGTCATAACTATTTGCACTGGTCAAGCCAACCAAT
308 CAAATAGTCATAACTATTTGAACTAATC--GATAAACAAT
* ** *
19648 TCATTTTTTAAATCCATTACACATTAATTTTTA-GAATATTAATAAATTAGCATTATTTTATTCT
1 TTATTTTTTAAAT---TTACTTATTAA-TTTTAGGAATA-TAATAAATTAGTATTATTTTATTCT
* * * * * *
19712 AAATAAGACTATATCAATAGAAACAATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAA
61 AAATAAGATTGTATGAACAGAAAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAA
* * * * * *
19777 TAAATAATTGTTCAAATTGTTTTAACTAATTGAACTAGTTTGGTAAATAGATTTATTTTTAAAAT
126 TAGATAATAGTTCAAATAGTTATAACTATTTGAACTTG-TT-GTAAATAGA--TATTTTTAAAAT
* * *
19842 CTCTTATTGATTTTCAAAATATTAATCAATTAATATTATTATATTCTAAACAAACTTATATGAAC
187 CTC-TATTAATTTTCAAAATATTAATAAATTAATATTATTATATTCTAAACAAAATTATATGAAC
* * *
19907 AAAACATTTGTTTTATGA-CAAACAAAAGGTCATAATGAA-TTGAAATAAATAATTATTCATATA
251 AAAACAATT-TTTTATGACCAAACAAAAGGTCATAA-CAATTTGAAATAAATAATTATTCAAATA
* * * * *
19970 TTCTTAAGTATTTAAAACTAGATTGATAAACAAT
314 GTCATAACTATTT-GAACTA-ATCGATAAACAAT
* * * * *
20004 TTAGTTTTTAAA--TACCTTAGTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTATA
1 TTATTTTTTAAATTTA-CTTATTAATTTTAGGAATA-TAATAAATTAGTATTATTTTATTCTAAA
** * * * ** * * **
20067 TAATTTTGTACGAACA-AAAATTATTATTTTACAATAAAACAAAATGTCATAACAATTTGAAATA
64 TAAGATTGTATGAACAGAAAA-AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA
** * *
20131 GATAATAGTTCAAATAGACATAACTATTTGAACTTGTT-T-AGTA-A-A-TTTT-CAA-CTC-AT
128 GATAATAGTTCAAATAGTTATAACTATTTGAACTTGTTGTAAATAGATATTTTTAAAATCTCTAT
* * * * * *
20188 TAATTTT-ATAATATTAATAAATTATTATTATTTTATTCTAAATAAAATTGTATGAATAGAAACA
193 TAATTTTCAAAATATTAATAAATTAATATTATTATATTCTAAACAAAATTATATGAACA-AAACA
* *
20252 ATTATTTTATGACCAAACAAAAGATCATAACAATTTGAAATAAAATAATTGTTCAAATAGTCATA
257 ATT-TTTTATGACCAAACAAAAGGTCATAACAATTTGAAAT-AAATAATTATTCAAATAGTCATA
* * *
20317 ACTATTTGAACTCACTCGTTAATCAGAT
320 ACTATTTGAACT-AATCGATAAACA-AT
*
20345 TTATTTTTTAAATTTTTTACTTATTAATTTTAGGAATA-AATAAATTAGTATTATTTTATTCCAA
1 TTATTTTTTAAA---TTTACTTATTAATTTTAGGAATATAATAAATTAGTATTATTTTATTCTAA
*
20409 ATAAGATTGTATGAACAGAAAAAATTGGTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA
63 ATAAGATTGTATGAACAGAAAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA
* * * *
20474 GCTAATTA-TTCAAATAGTTATAACTATTTGAACATGTTCAGAAAATAGATTTATTTTTAAAATT
128 GATAA-TAGTTCAAATAGTTATAACTATTTGAACTTGTT--GTAAATAGA--TATTTTTAAAATC
* * * * * * ** **
20538 TTTATTTTTTAA-TTTCTAGAATATTAATAAATTTATATTATTTTATTCGAAATAATCTTGCATG
188 TCTA----TTAATTTTC-AAAATATTAATAAATTAATATTATTATATTCTAAACAAAATTATATG
* * ** ** ** * ** *
20602 ATCAGAATGATTATTTTATGATAAAACAAAAGGTCATAA-TGTTTGAAATAGATAATCGTTCAGA
248 AACAAAACAATT-TTTTATGACCAAACAAAAGGTCATAACAATTTGAAATAAATAATTATTCAAA
* * ** * ** ** *
20666 TAATCATAACAAAAT-ATTCTTTTTTAT-GACAGAT
312 TAGTCATAACTATTTGA-ACTAATCGATAAACA-AT
* * * * * *
20700 TCT-TTTTTTTAATTCTCATTCTCATTTATTCTCGGAATATTAATAAGTTAGTATTATTTTACTT
1 T-TATTTTTTAAATT-T-A--CTTATTAATTTTAGGAATA-TAATAAATTAGTATTATTTTA-TT
* * ** * * *
20764 C-AAATAAG-TCTATATGAACTGAAATGATTGTTTTATTACAAAAGAAATGGTCATAACTAAGAG
59 CTAAATAAGAT-TGTATGAACAGAAAAAATTGTTTTATGACAAAACAAAAGGTCATAA-T----G
* * *
20827 ATTTAAAAAATAATTTGAAATAGATAATTA-TTCAAATAGTCATATCTATTTGAACTGGTTTAGT
118 ------------ATTTGAAATAGATAA-TAGTTCAAATAGTTATAACTATTTGAACTTG-TT-GT
* * * *
20891 AAATA-ATTTTATTTTTTAAATCTCTTATTAATTCTT-GAAATATTAATAAATTAGTATTATTTT
168 AAATAGA---TATTTTTAAAATCTC-TATTAATT-TTCAAAATATTAATAAATTAATATTATTAT
* ** * * * * *
20954 ATTTCGAATA-AACTTGTATATTG-A-AAAACAAATGTTTTATGACAAAACACAAGGTAATAACG
228 A-TTCTAA-ACAAAAT-TATA-TGAACAAAAC-AATTTTTTATGACCAAACAAAAGGTCATAACA
* * * * * * ** * ** * **
21016 ATTTGAAATAGATAGTTGTTCAAATGGCCATAATTATTCAAACTGATTTAGGAAATTGAT
288 ATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTAATCGA-TAAA-CAAT
* * * * * * * **
21076 TTATTTTTTAAATAT-CTTTTTAATTTTTGTAATATTAATGAAGTAGTATTATTTTATTTTGGAT
1 TTATTTTTTAAATTTACTTATTAATTTTAGGAATA-TAATAAATTAGTATTATTTTATTCTAAAT
* * * * * *
21140 AA-ACTTTTATGAGCTA-AAATAATTATTTTATGACAAAACAAAAGGTCATAAAGATTTTAAATA
65 AAGA-TTGTATGAAC-AGAAAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA
* * * * * *
21203 GATAATTGTTCAAATAGTCATAATTATTTGAACTTCTTCGGTAAATAAATTTATCTTTTCAAATC
128 GATAATAGTTCAAATAGTTATAACTATTTGAACTTGTT--GTAAATAGA--TAT-TTTT-AAA-A
*** * * * ** *
21268 TCTTGCTTATTAATTTTTTGAATGTTAATAAATTAATATTATTTTATT-TATAATAACCTTGTAT
186 TC-T-C-TATTAATTTTCAAAATATTAATAAATTAATATTATTATATTCTA-AACAAAATTATAT
* * * * * * * * *
21332 AAACTGAAAGAATTATTATATGACCAAATAAAAGATTAAAACGATTTTATGAAA-AAGATAATTA
247 GAAC-AAAACAATT-TTTTATGACCAAACAAAAGGTCATAAC-A-ATT-TGAAATAA-ATAATTA
* * * * * *
21396 TTCTAATAAT-TTAACCATTTAAACTGATTC-AGTAAACAAAT
306 TTCAAATAGTCATAACTATTTGAACT-AATCGA-TAAAC-AAT
* * * *
21437 TTATTTTTTAAATCTCTTACTTATTAGTTTTCA-AAAT-TATTAAATTAGTATTATTTT-TATCC
1 TTATTTTTTAAA--T-TTACTTATTAATTTT-AGGAATATAATAAATTAGTATTATTTTAT-TCT
* * ** * *
21499 AAATAAGCTTGTATGAACA-AAACAATTGTTTTATGTTAAAAGAAAAGGTCATAACGATTTGAAA
61 AAATAAGATTGTATGAACAGAAAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAA
* * * *
21563 TAGATAATCA-TTCATAGAGTCT-TAACTATTTGAACTAGTTTGATAATTAGATTTATTTTTTAA
126 TAGATAAT-AGTTCAAATAGT-TATAACTATTTGAACTTG-TTG-TAAATAGA--TA-TTTTTAA
** * * * * *
21626 TTTTCTTGGTTATTAAGTTTT-AAAATATTATTAAATTAGTATTATTTTATTCTAAATAAAA-TA
184 -AATC-T--CTATTAA-TTTTCAAAATATTAATAAATTAATATTATTATATTCTAAACAAAATTA
* * * ** * * * * *
21689 GTAGGAACAGAACCAATTGTTTGATGATAAAATAAAATGTTATAACGATTTGAACTAAATAATTA
244 -TATGAACA-AAACAATT-TTTTATGACCAAACAAAAGGTCATAACAATTTGAAATAAATAATTA
* *
21754 TTGAAATAGTCAAAACTATTTGAA
306 TTCAAATAGTCATAACTATTTGAA
21778 ATGGTTTGGT
Statistics
Matches: 1620, Mismatches: 375, Indels: 272
0.71 0.17 0.12
Matches are distributed among these distances:
338 43 0.03
339 25 0.02
340 34 0.02
341 42 0.03
342 2 0.00
343 107 0.07
344 7 0.00
345 16 0.01
346 2 0.00
347 4 0.00
348 4 0.00
349 1 0.00
351 12 0.01
352 113 0.07
353 6 0.00
354 52 0.03
355 20 0.01
356 86 0.05
357 54 0.03
358 156 0.10
359 108 0.07
360 48 0.03
361 251 0.15
362 112 0.07
363 35 0.02
364 1 0.00
365 13 0.01
366 1 0.00
370 2 0.00
371 73 0.05
372 29 0.02
373 36 0.02
374 41 0.03
375 67 0.04
376 17 0.01
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.41
Consensus pattern (345 bp):
TTATTTTTTAAATTTACTTATTAATTTTAGGAATATAATAAATTAGTATTATTTTATTCTAAATA
AGATTGTATGAACAGAAAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGAT
AATAGTTCAAATAGTTATAACTATTTGAACTTGTTGTAAATAGATATTTTTAAAATCTCTATTAA
TTTTCAAAATATTAATAAATTAATATTATTATATTCTAAACAAAATTATATGAACAAAACAATTT
TTTATGACCAAACAAAAGGTCATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATT
TGAACTAATCGATAAACAAT
Found at i:21835 original size:181 final size:179
Alignment explanation
Indices: 21435--21862 Score: 459
Period size: 181 Copynumber: 2.4 Consensus size: 179
21425 CAGTAAACAA
21435 ATTTATTTTTTAAATCTCTTACTTATTAGTTTTCAAA-ATTATTAAATTAGTATTATTTT-TATC
1 ATTTATTTTTTAAATCTCTTACTTATTAGTTTTCAAATATTATTAAATTAGTATTATTTTAT-TC
** * * * *
21498 CAAATAAGCTTGTATGAACAAAACAATTGTTTTATGTTAAAAGAAAAGGTCATAACGATTTGAAA
65 CAAATAAAATAGTAGGAACAAAACAATTGTTTGATGATAAAAGAAAAGGTCATAACGATTTGAAA
* * ** * *
21563 TAGATAATCATTCATAGAGTCTTAACTATTTGAACTAGTTTGATAATTAG
130 TAAATAATCATTCAAAGAGTCAAAACTATTTGAAATAGTTTGATAAGTAG
* * ** *
21613 ATTTATTTTTTAATTTTCTTGGTTATTAAGTTTTAAAATATTATTAAATTAGTATTATTTTATTC
1 ATTTATTTTTTAAATCTCTTACTTATT-AGTTTTCAAATATTATTAAATTAGTATTATTTTATTC
* * * * *
21678 TAAATAAAATAGTAGGAACAGAACCAATTGTTTGATGATAAAATAAAATGTTATAACGATTTGAA
65 CAAATAAAATAGTAGGAACA-AAACAATTGTTTGATGATAAAAGAAAAGGTCATAACGATTTGAA
* * * * * *
21743 CTAAATAATTATTGAAATAGTCAAAACTATTTGAAATGGTTTGGTAAGTAG
129 ATAAATAATCATTCAAAGAGTCAAAACTATTTGAAATAGTTTGATAAGTAG
** * ** *
21794 ATTT-TCTTTTTAAATCTCTTACAAAGTTA-TTTTCTAAATATTAATAAAACAATATTATTTTAT
1 ATTTAT-TTTTTAAATCTCTTACTTA-TTAGTTTTC-AAATATTATTAAATTAGTATTATTTTAT
*
21857 TTCAAA
63 TCCAAA
21863 CAAACTTATA
Statistics
Matches: 202, Mismatches: 41, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
178 23 0.11
179 9 0.04
180 44 0.22
181 124 0.61
182 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.43
Consensus pattern (179 bp):
ATTTATTTTTTAAATCTCTTACTTATTAGTTTTCAAATATTATTAAATTAGTATTATTTTATTCC
AAATAAAATAGTAGGAACAAAACAATTGTTTGATGATAAAAGAAAAGGTCATAACGATTTGAAAT
AAATAATCATTCAAAGAGTCAAAACTATTTGAAATAGTTTGATAAGTAG
Found at i:23805 original size:24 final size:23
Alignment explanation
Indices: 23778--23859 Score: 82
Period size: 24 Copynumber: 3.7 Consensus size: 23
23768 AATTATTATT
23778 TTAATTAATAATAATATATATAAA
1 TTAATTAATAAT-ATATATATAAA
*
23802 TTAATTAA-AATAT-TA-AAAAA
1 TTAATTAATAATATATATATAAA
* * *
23822 TTTA-TAATAATATAAATTTAAA
1 TTAATTAATAATATATATATAAA
23844 TTAATATAATAATATA
1 TTAAT-TAATAATATA
23860 AGACATTTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
19 3 0.06
20 12 0.26
21 3 0.06
22 8 0.17
23 3 0.06
24 18 0.38
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
TTAATTAATAATATATATATAAA
Found at i:23838 original size:16 final size:16
Alignment explanation
Indices: 23819--23852 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
23809 AAATATTAAA
23819 AAATTTATAA-TAATAT
1 AAATTTA-AATTAATAT
23835 AAATTTAAATTAATAT
1 AAATTTAAATTAATAT
23851 AA
1 AA
23853 TAATATAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 15 0.88
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATTTAAATTAATAT
Found at i:23873 original size:42 final size:43
Alignment explanation
Indices: 23783--23897 Score: 110
Period size: 43 Copynumber: 2.6 Consensus size: 43
23773 TTATTTTAAT
*
23783 TAATAATAATATATATAAATTAATTAAAATATTAAAAAATTTA
1 TAATAATAATAAATATAAATTAATTAAAATATTAAAAAATTTA
* * *
23826 TAATAAT-ATAAATTTAAATTAATATAATAATA-TAAGACATTTA
1 TAATAATAATAAATATAAATTAAT-TAA-AATATTAAAAAATTTA
* *
23869 -AATAACTAATTAATAAAATATTATATTAA
1 TAATAA-TAATAAATATAA-ATTA-ATTAA
23898 TAACTTATTA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
42 19 0.32
43 20 0.34
44 11 0.19
45 7 0.12
46 2 0.03
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.39
Consensus pattern (43 bp):
TAATAATAATAAATATAAATTAATTAAAATATTAAAAAATTTA
Found at i:25227 original size:357 final size:354
Alignment explanation
Indices: 24466--25634 Score: 943
Period size: 357 Copynumber: 3.3 Consensus size: 354
24456 TAATTGTCTT
* *
24466 AATATTAATAAATTTATATTATTTTA-TTCAAAATAAGCTTAG-ATGAATAGAAAAAATTCTTTT
1 AATATTAATAAA-TTATTTTATTTTATTTC-AAATAAGC-TAGTATGAATAG-AAAAATTGTTTT
* * * * * * ** * ** * * * *
24529 ATTACAAAACAAAATGTTATAGCTATTCCAAATAGATAATTATTCAAACAGTCCTAATTATTTAA
62 ATGACATAACAAAAGGTCATAACGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTGA
*** * * * * ** * * *
24594 ATTTGTTT-AGTAAACAAAGTCATTTTTTAAATCTCTTTATTATTAATTTTTGGATTATTACTAA
127 ACAAGTTTGA-CAAACAAATTTATTTTTTAAATCAC-TTATTATTAATTTTTAAAATATTAATAG
* * * * ** * * * *
24658 ATTATTATTATTTTATTTTGAATAAGCTTATATGAACTGAAACAACTCTTTTATGACAAATCAAA
190 ATTAGTATTACTTTATTCTGAATAAACTTATATGAACAAAAACAATTGTTGTATGACAAAACAAA
* * * * * * * * * * * * *
24723 ATGTCATACTGATTTGAAATAGATAATTATTCAAATTA-TCATGATTACTTGATCTAGTGT-GGT
255 AAGTAATAATGAATTGAAATATAGAATTGTTCAAA-TAGTCATAACTATTTGAACTGGT-TAGAT
* * * * * **
24786 -AAACA-T-ATTTTTAAAATTTTTTACTTACTAATTGTCAA
318 AAAAGATTCATTTTTTAAA---TCT-CTTATTAATTTTTGA
* * * *
24824 AATATTAATAAATTAGTATTATTTTAATGCAAATAAGCTTGTATGAATAGAAACAATTGTTTTAT
1 AATATTAATAAATTA-TTTTATTTTATTTCAAATAAGCTAGTATGAATAGAAA-AATTGTTTTAT
* * * * *
24889 AACATAACAAAATGTCATAAAGATTGGAAATAAATAATTGCTCAAATAGTCATAACTATTTGAGC
64 GACATAACAAAAGGTCATAACGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTGAAC
* * *
24954 AAGTTTGATAAATAGATTTATTTTTTAAATCAC-T-TT-TTAATTTTTAAAATATTAATAGATTA
129 AAGTTTGACAAACAAATTTATTTTTTAAATCACTTATTATTAATTTTTAAAATATTAATAGATTA
*
25016 GTATTACTTTATTCTGAATAAACTTATATGAACAAAAACATTTGTTGTATGACAAAACAAAAAGT
194 GTATTACTTTATTCTGAATAAACTTATATGAACAAAAACAATTGTTGTATGACAAAACAAAAAGT
* * * * * * *
25081 AATAATGAATTGAAATATATAATTGTTTAGATAGT-GTAA-TTTTTGGAATTGGTTAGGTAAAAA
259 AATAATGAATTGAAATATAGAATTGTTCAAATAGTCATAACTATTT-GAACTGGTTAGAT-AAAA
25144 GAATT-ATTTTTTAAATCTCTTACTTATTATTTTTTGA
322 G-ATTCATTTTTTAAATCTCTTA-TTA--A-TTTTTGA
* *
25181 AATATTAATAAATTCATTTTATTTTATTTCAAATAAGCTAGTATGAATTGAGAAAATTGTTTTAC
1 AATATTAATAAATT-ATTTTATTTTATTTCAAATAAGCTAGTATGAATAGA-AAAATTGTTTTAT
* * * *
25246 GACA-AGACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCATATAGTCTTAACTATTTGAA
64 GACATA-ACAAAAGGTCATAACGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTGAA
*** * ** *
25310 TTGGTTTGACAAACAAATTTATTTTTTAAATCCCTTAGTTATTAATTTTTGGAATATTATTAGAT
128 CAAGTTTGACAAACAAATTTATTTTTTAAATCACTTA-TTATTAATTTTTAAAATATTAATAGAT
** * * * * * * *
25375 TAGTATTGTTTTATTTTGAATAAGCTTATATGAACAGAAATAATTGTTTTATGACATAACAAAAG
192 TAGTATTACTTTATTCTGAATAAACTTATATGAACAAAAACAATTGTTGTATGACAAAACAAAAA
* * * * *
25440 GTTATAATGATTTGAAGTATAGAATTGTTCAAATAGTCATAACTATTTGAACTGGTTTGATAACA
257 GTAATAATGAATTGAAATATAGAATTGTTCAAATAGTCATAACTATTTGAACTGGTTAGATAAAA
25505 GATTCATTTTTTAAATCTCTTATTAATTTTTGA
322 GATTCATTTTTTAAATCTCTTATTAATTTTTGA
** * * *
25538 AGGATTAATAAATTATTATTATTTTATTTCAAATAATC-ATGTATG-ATAAAAATAATTGTTATA
1 AATATTAATAAATTATT-TTATTTTATTTCAAATAAGCTA-GTATGAATAGAAA-AATTGTTTTA
*
25601 TGAC-TAAACAAAAGGTGATAACGATTTGAAATAA
63 TGACAT-AACAAAAGGTCATAACGATTTGAAATAA
25635 TATCTTATTA
Statistics
Matches: 659, Mismatches: 121, Indels: 64
0.78 0.14 0.08
Matches are distributed among these distances:
352 4 0.01
353 16 0.02
354 103 0.16
355 7 0.01
356 48 0.07
357 200 0.30
358 125 0.19
359 3 0.00
360 8 0.01
361 128 0.19
362 13 0.02
363 4 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (354 bp):
AATATTAATAAATTATTTTATTTTATTTCAAATAAGCTAGTATGAATAGAAAAATTGTTTTATGA
CATAACAAAAGGTCATAACGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTGAACAA
GTTTGACAAACAAATTTATTTTTTAAATCACTTATTATTAATTTTTAAAATATTAATAGATTAGT
ATTACTTTATTCTGAATAAACTTATATGAACAAAAACAATTGTTGTATGACAAAACAAAAAGTAA
TAATGAATTGAAATATAGAATTGTTCAAATAGTCATAACTATTTGAACTGGTTAGATAAAAGATT
CATTTTTTAAATCTCTTATTAATTTTTGA
Found at i:25368 original size:181 final size:180
Alignment explanation
Indices: 24355--25633 Score: 962
Period size: 181 Copynumber: 7.2 Consensus size: 180
24345 TAACATAACA
** * * * *
24355 AAACAAAAAATCATAAC-ATGTTGAAATAAATAATTGCTCAAATAGCCATAA-TGATTAGAACTT
1 AAACAAAAGGTCATAACGAT-TTGAAATAGATAATTGTTCAAATAGTCATAACT-ATTTGAA-TT
* * *
24418 -GTTTGGTAAACATATTTA-TTTTTAAATCTTTTACTTATTAATTGTCTT--AATATTAATAAAT
63 GGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATT-T-TTGAAATATTAATAAA-
* * *
24479 TTATATTATTTTA-TTCAAAATAAGCTTAG-ATGAATAGAAAAAATTCTTTTATTAC
125 TTATATTATTTTATTTC-AAATAAGCTTAGTATGAATAGAAACAATTGTTTTATGAC
* * * * ** * * * * * *
24534 AAAACAAAATGTTATAGCTATTCCAAATAGATAATTATTCAAACAGTCCTAATTATTTAAATTTG
1 -AAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTGG
* * * * *
24599 TTT-AGTAAACAAAGTCATTTTTTAAATCTCTTTA-TTATTAATTTTTGGATTATTACTAAATTA
65 TTTGA-TAAACAAATTTATTTTTTAAATCTC-TTACTTATTAATTTTTGAAATATTAATAAATTA
** * *
24662 TTATTATTTTATTTTGAATAAGCTTA-TATGAACT-GAAACAACTCTTTTATGAC
128 -TATTATTTTATTTCAAATAAGCTTAGTATGAA-TAGAAACAATTGTTTTATGAC
* * * * *
24715 AAATCAAAATGTCAT-ACTGATTTGAAATAGATAATTATTCAAATTA-TCATGATTACTTG-ATC
1 AAA-CAAAAGGTCATAAC-GATTTGAAATAGATAATTGTTCAAA-TAGTCATAACTATTTGAAT-
* * * * * * * * **
24777 TAGTGTGGTAAAC--A--TATTTTTAAAATTTTTTACTTACTAATTGTCAAAATATTAATAAATT
62 TGGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATT
* * *
24838 AGTATTATTTTAATGCAAATAAGCTT-GTATGAATAGAAACAATTGTTTTATAAC
127 A-TATTATTTTATTTCAAATAAGCTTAGTATGAATAGAAACAATTGTTTTATGAC
* * * * * ****
24892 ATAACAAAATGTCATAAAGATTGGAAATAAATAATTGCTCAAATAGTCATAACTATTTGAGCAAG
1 A-AACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTGG
* * * * *
24957 TTTGATAAATAGATTTATTTTTTAAA--TC--ACTTTTTAATTTTTAAAATATTAATAGATTAGT
65 TTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTA-T
* * * * * * *
25018 ATTACTTTA-TTCTGAATAAACTTA-TATGAACAAAAACATTTGTTGTATGAC
129 ATTATTTTATTTC-AAATAAGCTTAGTATGAATAGAAACAATTGTTTTATGAC
* * * * * * * * *
25069 AAAACAAAAAGTAATAATGAATTGAAATATATAATTGTTTAGATAGT-GTAA-TTTTTGGAATTG
1 -AAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTT-GAATTG
* * * *
25132 GTTAGGTAAA-AAGAATTATTTTTTAAATCTCTTACTTATTATTTTTTGAAATATTAATAAATTC
64 GTTTGATAAACAA-ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATT-
* * *
25196 ATTTTATTTTATTTCAAATAAGC-TAGTATGAATTGAGAA-AATTGTTTTACGAC
127 ATATTATTTTATTTCAAATAAGCTTAGTATGAATAGA-AACAATTGTTTTATGAC
* *
25249 AAGACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCATATAGTCTTAACTATTTGAATTGG
1 AA-ACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTGG
* * * * * *
25314 TTTGACAAACAAATTTATTTTTTAAATCCCTTAGTTATTAATTTTTGGAATATTATTAGATTAGT
65 TTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTA-T
* ** * *
25379 ATTGTTTTATTTTGAATAAGCTTA-TATGAACAGAAATAATTGTTTTATGAC
129 ATTATTTTATTTCAAATAAGCTTAGTATGAATAGAAACAATTGTTTTATGAC
* * * * * *
25430 ATAACAAAAGGTTATAATGATTTGAAGTATAGAATTGTTCAAATAGTCATAACTATTTGAACTGG
1 A-AACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTGG
* * **
25495 TTTGAT-AACAGATTCATTTTTTAAA--TC-T-CTTATTAATTTTTGAAGGATTAATAAATTATT
65 TTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTA-T
* * * * *
25555 ATTATTTTATTTCAAATAATCAT-GTATG-ATAAAAATAATTGTTATATGAC
129 ATTATTTTATTTCAAATAAGCTTAGTATGAATAGAAACAATTGTTTTATGAC
*
25605 TAAACAAAAGGTGATAACGATTTGAAATA
1 -AAACAAAAGGTCATAACGATTTGAAATA
25634 ATATCTTATT
Statistics
Matches: 871, Mismatches: 177, Indels: 107
0.75 0.15 0.09
Matches are distributed among these distances:
175 48 0.06
176 82 0.09
177 230 0.26
178 7 0.01
179 11 0.01
180 179 0.21
181 298 0.34
182 16 0.02
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (180 bp):
AAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTGGT
TTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTATAT
TATTTTATTTCAAATAAGCTTAGTATGAATAGAAACAATTGTTTTATGAC
Found at i:25831 original size:17 final size:17
Alignment explanation
Indices: 25811--25844 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25801 ACTAATTTAA
*
25811 ATTACCTATTAATAATT
1 ATTACATATTAATAATT
*
25828 ATTATATATTAATAATT
1 ATTACATATTAATAATT
25845 TTTAATTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTACATATTAATAATT
Found at i:25883 original size:15 final size:17
Alignment explanation
Indices: 25858--25896 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
25848 AATTAATTTT
25858 TAATATTAATTAT-ATA
1 TAATATTAATTATAATA
25874 TAAT-TTAATTATAATA
1 TAATATTAATTATAATA
25890 T-ATATTA
1 TAATATTA
25897 TTTAAATAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATATTAATTATAATA
Found at i:25888 original size:27 final size:26
Alignment explanation
Indices: 25822--25890 Score: 70
Period size: 27 Copynumber: 2.7 Consensus size: 26
25812 TTACCTATTA
*
25822 ATAATT-ATTAT-ATATTAATAATTT
1 ATAATTAATTATAATATTAATAATAT
* * *
25846 TTAATTAATTTTTAATATTAATTATAT
1 ATAATTAA-TTATAATATTAATAATAT
25873 ATAATTTAATTATAATAT
1 ATAA-TTAATTATAATAT
25891 ATATTATTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 5 0.14
25 1 0.03
26 3 0.09
27 22 0.63
28 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
ATAATTAATTATAATATTAATAATAT
Found at i:26030 original size:22 final size:22
Alignment explanation
Indices: 25987--26030 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
25977 ATTTTATTAG
* * * *
25987 TTATTCTAATATTTATTTAATA
1 TTATTATAATAATAATTAAATA
26009 TTATTATAATAATAATTAAATA
1 TTATTATAATAATAATTAAATA
26031 ATAATTTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TTATTATAATAATAATTAAATA
Found at i:27561 original size:14 final size:14
Alignment explanation
Indices: 27544--27573 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
27534 AAATAAGTAT
27544 TATTAATTAATTAA
1 TATTAATTAATTAA
*
27558 TATTAATTATTTAA
1 TATTAATTAATTAA
27572 TA
1 TA
27574 GTATATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATTAATTAATTAA
Found at i:27566 original size:18 final size:18
Alignment explanation
Indices: 27541--27590 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
27531 TTTAAATAAG
27541 TATT-ATTAATTAATTAA
1 TATTAATTAATTAATTAA
* *
27558 TATTAATTATTTAA-TAG
1 TATTAATTAATTAATTAA
*
27575 TATATAATTAAGTAAT
1 TAT-TAATTAATTAAT
27591 ATTAAAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 9 0.35
18 17 0.65
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (18 bp):
TATTAATTAATTAATTAA
Found at i:27892 original size:11 final size:11
Alignment explanation
Indices: 27876--27905 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
27866 TAGGTATCTA
27876 ATATAATTACG
1 ATATAATTACG
*
27887 ATATAATTATG
1 ATATAATTACG
27898 ATATAATT
1 ATATAATT
27906 GAGTAAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (11 bp):
ATATAATTACG
Found at i:28064 original size:23 final size:23
Alignment explanation
Indices: 28027--28073 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
28017 AATTATTAAA
*
28027 TTAATTAAATAATAATTAAATAT
1 TTAATTAAATAATAAATAAATAT
* * *
28050 TTAATTAATTTATAAATAATTAT
1 TTAATTAAATAATAAATAAATAT
28073 T
1 T
28074 AAAATTACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TTAATTAAATAATAAATAAATAT
Found at i:28274 original size:24 final size:24
Alignment explanation
Indices: 28247--28292 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
28237 ATTAACAAAT
*
28247 ATTATATAAATTT-ATAATATATCA
1 ATTAAATAAATTTAATAA-ATATCA
*
28271 ATTAAATTAATTTAATAAATAT
1 ATTAAATAAATTTAATAAATAT
28293 TAATAATCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTAAATAAATTTAATAAATATCA
Found at i:28330 original size:26 final size:26
Alignment explanation
Indices: 28301--28359 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
28291 ATTAATAATC
*
28301 TTATA-ATATATAAATAGTTTTATTTA
1 TTATATATATA-AAATAGTTTAATTTA
28327 TTATATATATAAAATAGTTTAATTT-
1 TTATATATATAAAATAGTTTAATTTA
28352 TTA-ATATA
1 TTATATATA
28360 AATATATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 5 0.16
25 3 0.10
26 18 0.58
27 5 0.16
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (26 bp):
TTATATATATAAAATAGTTTAATTTA
Found at i:28362 original size:21 final size:25
Alignment explanation
Indices: 28301--28410 Score: 77
Period size: 25 Copynumber: 4.3 Consensus size: 25
28291 ATTAATAATC
*
28301 TTATAATATATAAATAGTTTTATTTA
1 TTAT-ATATATAAATAGTTTTAATTA
28327 TTATATATATAAAATAG-TTTAATT-
1 TTATATATAT-AAATAGTTTTAATTA
*
28351 TT-TA-ATATAAATATATTTATAATATA
1 TTATATATATAAATA-GTTT-TAAT-TA
* * *
28377 ATATTATTATATTAAGA-TTTTAATTA
1 TTA-TA-TATATAAATAGTTTTAATTA
28403 TTATATAT
1 TTATATAT
28411 TAATATTAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 22
0.71 0.06 0.23
Matches are distributed among these distances:
21 5 0.07
22 4 0.06
23 4 0.06
24 9 0.13
25 15 0.22
26 15 0.22
27 4 0.06
28 5 0.07
30 7 0.10
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (25 bp):
TTATATATATAAATAGTTTTAATTA
Found at i:28384 original size:17 final size:17
Alignment explanation
Indices: 28353--28440 Score: 67
Period size: 17 Copynumber: 5.1 Consensus size: 17
28343 GTTTAATTTT
*
28353 TAATATAA-ATATATTTA
1 TAATATAATAT-TAATTA
28370 TAATATAATATT-ATTA
1 TAATATAATATTAATTA
* *
28386 TATTA-AGATTTTAATTA
1 TAATATA-ATATTAATTA
28403 TTATATATTAATATTAATTA
1 -TA-ATA-TAATATTAATTA
28423 TAAATATAATA-TAATTA
1 T-AATATAATATTAATTA
28440 T
1 T
28441 GTTATAACCC
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
15 1 0.02
16 11 0.19
17 20 0.34
18 9 0.16
19 6 0.10
20 10 0.17
21 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (17 bp):
TAATATAATATTAATTA
Found at i:28396 original size:28 final size:26
Alignment explanation
Indices: 28365--28440 Score: 68
Period size: 27 Copynumber: 2.8 Consensus size: 26
28355 ATATAAATAT
28365 ATTTATAATATAATATTATTATATTAA
1 ATTTATAATATAATATTATTATATT-A
*
28392 GATTT-TAAT-TATTATATATTAATATTA
1 -ATTTATAATATAATAT-TATT-ATATTA
*
28419 A-TTATAAATATAATATAATTAT
1 ATTTAT-AATATAATATTATTAT
28441 GTTATAACCC
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
25 2 0.05
26 9 0.22
27 15 0.38
28 14 0.35
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (26 bp):
ATTTATAATATAATATTATTATATTA
Found at i:28665 original size:10 final size:11
Alignment explanation
Indices: 28640--28674 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
28630 ATAAGGATGT
28640 TTATTATCATAA
1 TTATTAT-ATAA
28652 TTATTATA-AA
1 TTATTATATAA
28662 TTATTATATAA
1 TTATTATATAA
28673 TT
1 TT
28675 TAATATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 5 0.23
12 7 0.32
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (11 bp):
TTATTATATAA
Found at i:28689 original size:23 final size:23
Alignment explanation
Indices: 28641--28704 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
28631 TAAGGATGTT
* *
28641 TATTATCATAA-TTATTA-TAAAT
1 TATTAT-ATAATTTAATATTAAAA
28663 TATTATATAATTTAATATTAAAA
1 TATTATATAATTTAATATTAAAA
*
28686 TATTATATATTTTTAATAT
1 TATTATATA-ATTTAATAT
28705 ATCTATTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 4 0.11
22 11 0.31
23 13 0.36
24 8 0.22
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TATTATATAATTTAATATTAAAA
Found at i:29398 original size:16 final size:17
Alignment explanation
Indices: 29367--29418 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 17
29357 CTAATATTTA
29367 ATTA-TATAATTATAAT
1 ATTACTATAATTATAAT
29383 ATTACTATAATT-TAAT
1 ATTACTATAATTATAAT
* *
29399 ATAACTATAA-TATATT
1 ATTACTATAATTATAAT
29415 ATTA
1 ATTA
29419 TATTAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 1 0.03
16 23 0.74
17 7 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTACTATAATTATAAT
Found at i:29761 original size:22 final size:22
Alignment explanation
Indices: 29735--29784 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
29725 TTATTAAAAC
* * *
29735 TAATAAATATTTAACTATTTTA
1 TAATAAATAATTAAATATATTA
* *
29757 TAATATATAATTAAATATATTG
1 TAATAAATAATTAAATATATTA
29779 TAATAA
1 TAATAA
29785 TTATAATATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
TAATAAATAATTAAATATATTA
Found at i:29919 original size:20 final size:19
Alignment explanation
Indices: 29873--29919 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
29863 TTAATAGGTT
*
29873 TATTATTTGTTTAAAATAA
1 TATTATTTGATTAAAATAA
29892 TATATATTT-ATTAATAATAA
1 TAT-TATTTGATTAA-AATAA
29912 GTATTATT
1 -TATTATT
29920 ATGTTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 7 0.29
20 14 0.58
21 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (19 bp):
TATTATTTGATTAAAATAA
Found at i:30398 original size:11 final size:11
Alignment explanation
Indices: 30382--30415 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
30372 ATTTTATTTA
30382 AATTAATAAAT
1 AATTAATAAAT
30393 AATTAATAAAT
1 AATTAATAAAT
*
30404 AA-AAATAAAT
1 AATTAATAAAT
30414 AA
1 AA
30416 ATATTATTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AATTAATAAAT
Found at i:30486 original size:13 final size:14
Alignment explanation
Indices: 30461--30508 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
30451 TAATTATATG
30461 AAATTATAATAATT
1 AAATTATAATAATT
30475 AAATTA-AATAATTT
1 AAATTATAATAA-TT
* *
30489 TAATTTTAAT-ATT
1 AAATTATAATAATT
30502 AAATTAT
1 AAATTAT
30509 TAAAGTGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
13 12 0.43
14 13 0.46
15 3 0.11
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATTATAATAATT
Found at i:30492 original size:22 final size:22
Alignment explanation
Indices: 30462--30510 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
30452 AATTATATGA
30462 AATTATAATAATTAA-ATTAAAT
1 AATTATAAT-ATTAATATTAAAT
* *
30484 AATTTTAATTTTAATATTAAAT
1 AATTATAATATTAATATTAAAT
*
30506 TATTA
1 AATTA
30511 AAGTGATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTATAATATTAATATTAAAT
Found at i:30897 original size:13 final size:13
Alignment explanation
Indices: 30879--30927 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
30869 AATTAAATAC
30879 AAATATTTATTTA
1 AAATATTTATTTA
*
30892 AAATA-TTAGTTA
1 AAATATTTATTTA
* *
30904 ATAATCTCTATTTA
1 A-AATATTTATTTA
30918 AAATATTTAT
1 AAATATTTAT
30928 ATATTTAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
12 7 0.25
13 15 0.54
14 6 0.21
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (13 bp):
AAATATTTATTTA
Found at i:30949 original size:16 final size:17
Alignment explanation
Indices: 30912--30952 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
30902 TAATAATCTC
**
30912 TATTTAAAATATTTATA
1 TATTTAAAATAACTATA
30929 TATTTAAAATAACTA-A
1 TATTTAAAATAACTATA
30945 TATTTAAA
1 TATTTAAA
30953 TGTTCATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
TATTTAAAATAACTATA
Found at i:32307 original size:24 final size:23
Alignment explanation
Indices: 32252--32315 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 23
32242 TAATTAATAT
32252 AATTATTAATTATAATTACTTTA
1 AATTATTAATTATAATTACTTTA
* *
32275 AATTAATTATTTAT-ATATAGTTATA
1 AATT-ATTAATTATAAT-TACTT-TA
*
32300 AATTATT-AGTATAATT
1 AATTATTAATTATAATT
32316 GTTTAATCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
23 10 0.30
24 17 0.52
25 6 0.18
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (23 bp):
AATTATTAATTATAATTACTTTA
Found at i:32477 original size:23 final size:22
Alignment explanation
Indices: 32425--32477 Score: 52
Period size: 24 Copynumber: 2.3 Consensus size: 22
32415 TTTAGTAAAC
* *
32425 AAATTTATTTTTTAAATATTTT
1 AAATTAATTTTTGAAATATTTT
*
32447 AGTTATTAATTTTTGAAATATTATT
1 A--AATTAATTTTTGAAATATT-TT
32472 AAATTA
1 AAATTA
32478 GTATTATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
22 1 0.04
23 4 0.17
24 16 0.67
25 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (22 bp):
AAATTAATTTTTGAAATATTTT
Found at i:32703 original size:180 final size:180
Alignment explanation
Indices: 32368--32690 Score: 393
Period size: 180 Copynumber: 1.8 Consensus size: 180
32358 ATATCAAAAC
* * * *
32368 GATTTGAAATAGATAATTATTCTAATAGTCTTAACCATTTGAACTAATTTAGTAAACAAATTTAT
1 GATTTGAAATAGATAATCATTCTAATAGTCTTAACCATTTCAACTAATTCAGCAAACAAATTTAT
*
32433 TTTTTAAATATTTTAGTTATTAATTTTTGAAATATTATTAAATTAGTATTATTTTAATCTAAATA
66 TTTTTAAATATTTTAGTTATTAATTTTAGAAATATTATTAAATTAGTATTATTTTAATCTAAATA
** * *
32498 AGCTTGTACGAACAAAAAAATTGTTTTACGACAAAAGAAAATGTCATAAT
131 AAATAGTACAAACAAAAAAATTGTTTTACGACAAAAGAAAATGTCATAAT
* * * ** *
32548 GATTTGAAATAGATAATCATTC-ATATAGTCTTAACTATTTCAACTAGTTCGGCAATTAGATTTA
1 GATTTGAAATAGATAATCATTCTA-ATAGTCTTAACCATTTCAACTAATTCAGCAAACAAATTTA
* * * ** *
32612 TTTTTT-AATTTTCTTGGTTATTAAGTTTTAG-AATATTATTAAATTAGTTTTATTTTTTTC-GA
65 TTTTTTAAATATT-TTAGTTATTAA-TTTTAGAAATATTATTAAATTAGTATTATTTTAATCTAA
*
32674 ATAAAATAGTATAAACA
128 ATAAAATAGTACAAACA
32691 GAACCAATTG
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
179 19 0.16
180 94 0.80
181 5 0.04
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (180 bp):
GATTTGAAATAGATAATCATTCTAATAGTCTTAACCATTTCAACTAATTCAGCAAACAAATTTAT
TTTTTAAATATTTTAGTTATTAATTTTAGAAATATTATTAAATTAGTATTATTTTAATCTAAATA
AAATAGTACAAACAAAAAAATTGTTTTACGACAAAAGAAAATGTCATAAT
Found at i:32833 original size:26 final size:24
Alignment explanation
Indices: 32788--32841 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 24
32778 TAATTTTTTA
32788 AATATTAATAAATTAGTATTATTAAT
1 AATATTAATAAATTA-TATT-TTAAT
32814 AATATTAATAACGATT-TATTTTAAT
1 AATATTAATAA--ATTATATTTTAAT
32839 AAT
1 AAT
32842 TAATTTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 8 0.31
26 15 0.58
28 3 0.12
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (24 bp):
AATATTAATAAATTATATTTTAAT
Found at i:32915 original size:28 final size:27
Alignment explanation
Indices: 32884--32956 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 27
32874 AACTTATTTA
*
32884 ATATTTAATAAATTAATTCAATAAATAT
1 ATATTTAATAAATTAA-TAAATAAATAT
* *
32912 ATATTTATTAATATTAATAAATTAATAT
1 ATATTTAATAA-ATTAATAAATAAATAT
32940 A-ATCGTTAATAAATTAA
1 ATAT--TTAATAAATTAA
32957 ATATTTAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
27 2 0.05
28 25 0.66
29 11 0.29
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (27 bp):
ATATTTAATAAATTAATAAATAAATAT
Found at i:32923 original size:23 final size:23
Alignment explanation
Indices: 32897--32987 Score: 91
Period size: 23 Copynumber: 4.0 Consensus size: 23
32887 TTTAATAAAT
*
32897 TAATTCAATAAA-TATATATTTAT
1 TAATT-AATAAATTATATATTTAA
32920 TAATATTAATAAATTA-ATA--TAA
1 T-A-ATTAATAAATTATATATTTAA
** *
32942 TCGTTAATAAATTAAATATTTAA
1 TAATTAATAAATTATATATTTAA
32965 TAATTAATAAATTATATATTTAA
1 TAATTAATAAATTATATATTTAA
32988 ATTAATTTAT
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
20 11 0.20
21 3 0.05
22 3 0.05
23 24 0.43
24 10 0.18
25 5 0.09
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (23 bp):
TAATTAATAAATTATATATTTAA
Found at i:32966 original size:16 final size:16
Alignment explanation
Indices: 32921--32971 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 16
32911 TATATTTATT
32921 AATA-TTAATAAATTA
1 AATATTTAATAAATTA
32936 ATATAATCGTTAATAAATTA
1 A-AT-AT--TTAATAAATTA
32956 AATATTTAAT-AATTA
1 AATATTTAATAAATTA
32971 A
1 A
32972 TAAATTATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 7 0.23
16 7 0.23
17 1 0.03
18 2 0.06
19 2 0.06
20 12 0.39
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (16 bp):
AATATTTAATAAATTA
Found at i:33175 original size:23 final size:23
Alignment explanation
Indices: 33138--33184 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
33128 AATTATTAAA
*
33138 TTAATTAAATAATAATTAAATAT
1 TTAATTAAATAATAAATAAATAT
* * *
33161 TTAATTAATTTATAAATAATTAT
1 TTAATTAAATAATAAATAAATAT
33184 T
1 T
33185 AAAATTACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TTAATTAAATAATAAATAAATAT
Found at i:33636 original size:24 final size:25
Alignment explanation
Indices: 33570--33636 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 25
33560 TTTAATTATT
33570 TATTTTAATTGT--AATTATATAACTA
1 TATTTTAATT-TAAAATTATATAAC-A
* *
33595 TATTTTTATTTAATATTATATAA-A
1 TATTTTAATTTAAAATTATATAACA
33619 TA-TTTAATTTAACAATTA
1 TATTTTAATTTAA-AATTA
33637 AATTAATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
23 9 0.26
24 8 0.23
25 9 0.26
26 9 0.26
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (25 bp):
TATTTTAATTTAAAATTATATAACA
Found at i:34353 original size:181 final size:180
Alignment explanation
Indices: 33840--34500 Score: 456
Period size: 181 Copynumber: 3.7 Consensus size: 180
33830 TTGTTTTTTA
* * * * * * *
33840 TCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAG---
1 TCATAAAAGCTTATTCAAAACAAAATAATACCAAATTCTTAACA-TTCAAAAAATTAATAAGCAA
* * * *
33901 -AGATTTAAAAATATAAATTTGTTTACCAAACAAGTTCAAATAGTTAGGACTATTTGAACAATTA
65 AATATTTAAAAA-ATAAATTTGTTTACCGAACAAGTTCAAATAGTTA-AACTATTTGAAAAATTA
* * * * * * * * *
33965 TCAATCTCAAATCGTTGA-GATCTTTT-TTT-GTCATAAAACAATTGTTTTC-GA
128 TCTATTTAAAATAGTT-ATGACCTTTTGTTTAGACATAATATAATTG-TTTCAGT
* ** * ** * ** * *
34016 TCATAGAAGCTTATTCAGTTA-AAAATATTATTAATTTAATAATATTTC-AAAAATTAATAAGTA
1 TCATAAAAGCTTATTCA-AAACAAAATAATACCAAATTCTTAACA-TTCAAAAAATTAATAAGCA
* * * * * * * * *
34079 AGAGATTTAAAAAATAAATTTGCTTGCAGAACTAGTTCAAATAGTTAAAATGATTAGAATAATTA
64 AAATATTTAAAAAATAAATTTGTTTACCGAACAAGTTCAAATAGTTAAACT-ATTTGAAAAATTA
* * * * * * * *
34144 TCTATTTTAGATCGTTCTTACTTTTTGTTTAGTCATCAA-ATACTTG-TTCA-T
128 TCTATTTAAAATAGTTATGACCTTTTGTTTAGACAT-AATATAATTGTTTCAGT
* * * *
34195 ATCTTACAAGTTTATTCAGAACAAAATAAT-CCAAATTCATTAACATTCAAAAAATTAATAAGCA
1 -TCATAAAAGCTTATTCAAAACAAAATAATACCAAATTC-TTAACATTCAAAAAATTAATAAGCA
* *
34259 AAATATTTGAAAAAATAAATTTGTTTACCGGACAAGTTCAAATAGTTATGACTATTTGAAAAATT
64 AAATATTT-AAAAAATAAATTTGTTTACCGAACAAGTTCAAATAGTTA-AACTATTTGAAAAATT
* *
34324 ATTTATTTAAAATAGTTATGACCTTTTGTTTTGACATAATATAATTGTTTCAGT
127 ATCTATTTAAAATAGTTATGACCTTTTGTTTAGACATAATATAATTGTTTCAGT
* * * * * *** * *
34378 TCATAAAAGCTTATTTAAAATAAAATAATACTAATTTCTTAATATTTTGAAAGTTAATAAGCTAG
1 TCATAAAAGCTTATTCAAAACAAAATAATACCAAATTCTTAACATTCAAAAAATTAATAAGC-AA
* *
34443 AGT-TTTAAAAAATAAATTTGTTTACCGAACAAATTCAAATAGTTACAACTATTT-AAAA
65 AATATTTAAAAAATAAATTTGTTTACCGAACAAGTTCAAATAGTTA-AACTATTTGAAAA
34501 TAGCTTACTC
Statistics
Matches: 383, Mismatches: 80, Indels: 40
0.76 0.16 0.08
Matches are distributed among these distances:
176 52 0.14
177 1 0.00
178 2 0.01
179 68 0.18
180 65 0.17
181 132 0.34
182 53 0.14
183 10 0.03
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (180 bp):
TCATAAAAGCTTATTCAAAACAAAATAATACCAAATTCTTAACATTCAAAAAATTAATAAGCAAA
ATATTTAAAAAATAAATTTGTTTACCGAACAAGTTCAAATAGTTAAACTATTTGAAAAATTATCT
ATTTAAAATAGTTATGACCTTTTGTTTAGACATAATATAATTGTTTCAGT
Found at i:34903 original size:16 final size:16
Alignment explanation
Indices: 34882--34944 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 16
34872 TGCATATTAT
34882 TAATTAATATTAATAA
1 TAATTAATATTAATAA
* *
34898 TAATTAATTACTAA-AT
1 TAATTAA-TATTAATAA
34914 TAATT-ATA-TAATAA
1 TAATTAATATTAATAA
* *
34928 GAATTTATATTTAATAA
1 TAATTAATA-TTAATAA
34945 ATTATTATAC
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
13 3 0.08
14 7 0.18
15 4 0.11
16 13 0.34
17 11 0.29
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
TAATTAATATTAATAA
Found at i:34959 original size:14 final size:14
Alignment explanation
Indices: 34942--34974 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
34932 TTATATTTAA
34942 TAAATTATTATACT
1 TAAATTATTATACT
34956 TAAA-TATTATACT
1 TAAATTATTATACT
34969 TAAATT
1 TAAATT
34975 TAATAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (14 bp):
TAAATTATTATACT
Found at i:35445 original size:23 final size:24
Alignment explanation
Indices: 35391--35445 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
35381 TAATTACTTA
*
35391 TTTAATATTAATTTATAAATAATAT
1 TTTAATATTAA-TAATAAATAATAT
** *
35416 TCAAATATTAA-AATATATAATAT
1 TTTAATATTAATAATAAATAATAT
35439 TTTAATA
1 TTTAATA
35446 ATTCTAATTA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 15 0.62
25 9 0.38
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
TTTAATATTAATAATAAATAATAT
Found at i:35549 original size:16 final size:16
Alignment explanation
Indices: 35516--35565 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
35506 ATTAACGAAC
**
35516 ATTTAA-ATATTAGTT
1 ATTTAATATATTAAAT
35531 ATTTAATATATTAAAT
1 ATTTAATATATTAAAT
*
35547 ATTTATTATAATT-AAT
1 ATTTAATAT-ATTAAAT
35563 ATT
1 ATT
35566 AGTTTAAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.20
16 21 0.70
17 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
ATTTAATATATTAAAT
Found at i:35555 original size:23 final size:24
Alignment explanation
Indices: 35518--35564 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
35508 TAACGAACAT
35518 TTAAATATTAGTTAT-TTAATATA
1 TTAAATATTAGTTATATTAATATA
35541 TTAAATATTTA-TTATAATTAATAT
1 TTAAATA-TTAGTTAT-ATTAATAT
35565 TAGTTTAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 11 0.52
24 3 0.14
25 7 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
TTAAATATTAGTTATATTAATATA
Found at i:36723 original size:21 final size:20
Alignment explanation
Indices: 36689--36739 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
36679 GCTATTTAAA
36689 TTAAATA-TTATTTAATTAT
1 TTAAATATTTATTTAATTAT
*
36708 TTAAATATTCTATTTATTTAT
1 TTAAATATT-TATTTAATTAT
*
36729 TTTAATATTTA
1 TTAAATATTTA
36740 ATATCAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 7 0.25
20 3 0.11
21 18 0.64
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTAAATATTTATTTAATTAT
Found at i:36759 original size:9 final size:9
Alignment explanation
Indices: 36745--36778 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
36735 ATTTAATATC
36745 AATTAATTA
1 AATTAATTA
36754 AATTAATTA
1 AATTAATTA
*
36763 AATTGATTA
1 AATTAATTA
*
36772 TATTAAT
1 AATTAAT
36779 ATAATATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (9 bp):
AATTAATTA
Found at i:36797 original size:20 final size:20
Alignment explanation
Indices: 36772--36810 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
36762 AAATTGATTA
36772 TATTAATATA-ATATAATAAT
1 TATTAATA-AGATATAATAAT
36792 TATTAATAAGATATAATAA
1 TATTAATAAGATATAATAA
36811 AGGATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (20 bp):
TATTAATAAGATATAATAAT
Found at i:36879 original size:10 final size:10
Alignment explanation
Indices: 36864--36899 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
36854 GAATAATAAT
36864 TAATTATTAA
1 TAATTATTAA
36874 TAATTATTAAA
1 TAATTATT-AA
*
36885 TAATTAATAA
1 TAATTATTAA
36895 TAATT
1 TAATT
36900 TGCAAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TAATTATTAA
Found at i:37077 original size:17 final size:17
Alignment explanation
Indices: 37055--37111 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
37045 ATTTATATTT
37055 TAATTAATTATGAATAA
1 TAATTAATTATGAATAA
* **
37072 TAATTAAAATATTCATAA
1 TAATT-AATTATGAATAA
*
37090 TTATCT-ATTATGAATAA
1 TAAT-TAATTATGAATAA
37107 TAATT
1 TAATT
37112 TAAAATTAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 5
0.70 0.19 0.12
Matches are distributed among these distances:
16 1 0.03
17 16 0.53
18 12 0.40
19 1 0.03
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (17 bp):
TAATTAATTATGAATAA
Found at i:37147 original size:15 final size:15
Alignment explanation
Indices: 37124--37158 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
37114 AAATTAATCT
*
37124 ATATATATTATTATA
1 ATATTTATTATTATA
*
37139 ATATTTATTGTTATA
1 ATATTTATTATTATA
37154 ATATT
1 ATATT
37159 AAGGATTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
ATATTTATTATTATA
Found at i:37223 original size:23 final size:24
Alignment explanation
Indices: 37170--37224 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
37160 AGGATTTTCT
* *
37170 TATTCATATTAAATAATTTATTAA
1 TATTAATATTAAATAATTTAATAA
*
37194 TATTAATATT-AATTATTTAATAA
1 TATTAATATTAAATAATTTAATAA
37217 GTA-TAATA
1 -TATTAATA
37225 CAATAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.59
24 11 0.41
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
TATTAATATTAAATAATTTAATAA
Found at i:37745 original size:19 final size:18
Alignment explanation
Indices: 37707--37745 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
37697 ATTTTATTTT
37707 ATTAAAAATAAATTAATA
1 ATTAAAAATAAATTAATA
* *
37725 ATTAAAATATTAATTATTA
1 ATTAAAA-ATAAATTAATA
37744 AT
1 AT
37746 ATTTCAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTAAAAATAAATTAATA
Done.