Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168348.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_57, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 144347
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
File 2 of 4
Found at i:37746 original size:22 final size:22
Alignment explanation
Indices: 37718--37760 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
37708 TTAAAAATAA
*
37718 ATTAATAATTAAAATATTAATT
1 ATTAATAATTAAAACATTAATT
* *
37740 ATTAATATTTCAAACATTAAT
1 ATTAATAATTAAAACATTAAT
37761 AAGTAAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (22 bp):
ATTAATAATTAAAACATTAATT
Found at i:38232 original size:23 final size:20
Alignment explanation
Indices: 38154--38229 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 20
38144 GTTTATTATA
38154 AATTTATAATATAACAATTATT
1 AATTTATAAT-TAACAATT-TT
38176 ATATTATATAATTAACAA-TTT
1 A-ATT-TATAATTAACAATTTT
* *
38197 AATTTTTTATTAATCAAATTTT
1 AATTTATAATTAA-C-AATTTT
38219 AATTTATAATT
1 AATTTATAATT
38230 TAAAATTATA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
19 7 0.16
20 4 0.09
21 5 0.11
22 14 0.31
23 9 0.20
24 6 0.13
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (20 bp):
AATTTATAATTAACAATTTT
Found at i:38492 original size:13 final size:13
Alignment explanation
Indices: 38465--38524 Score: 59
Period size: 13 Copynumber: 4.5 Consensus size: 13
38455 TTAACTTATC
*
38465 ATTATAATATTAA
1 ATTATAATTTTAA
38478 A-TATAATTGTTAA
1 ATTATAATT-TTAA
38491 ATTATACAATTTTAA
1 ATTAT--AATTTTAA
* *
38506 ATTATAATTATAT
1 ATTATAATTTTAA
38519 ATTATA
1 ATTATA
38525 CTATATTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
12 6 0.15
13 18 0.45
14 3 0.08
15 9 0.22
16 4 0.10
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (13 bp):
ATTATAATTTTAA
Found at i:38507 original size:15 final size:16
Alignment explanation
Indices: 38482--38511 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
38472 TATTAAATAT
38482 AATTGTTAAATTATAC
1 AATTGTTAAATTATAC
38498 AATT-TTAAATTATA
1 AATTGTTAAATTATA
38512 ATTATATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (16 bp):
AATTGTTAAATTATAC
Found at i:38621 original size:18 final size:18
Alignment explanation
Indices: 38595--38654 Score: 81
Period size: 18 Copynumber: 3.4 Consensus size: 18
38585 GGAGATATTA
38595 ATTAATAAATT-GTTATAT
1 ATTAATAAATTAG-TATAT
*
38613 ATTATTAAATTAGTATAT
1 ATTAATAAATTAGTATAT
38631 ATTAATAAATTA-TA-AT
1 ATTAATAAATTAGTATAT
38647 ATTAATAA
1 ATTAATAA
38655 TTTAAATTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.26
17 2 0.05
18 26 0.67
19 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
ATTAATAAATTAGTATAT
Found at i:39124 original size:20 final size:20
Alignment explanation
Indices: 39099--39147 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
39089 TAATTTATTT
*
39099 ATATTACTTATTAATAATAA
1 ATATTAATTATTAATAATAA
* *
39119 ATATTAATTATTTATTATAA
1 ATATTAATTATTAATAATAA
*
39139 ATTTTAATT
1 ATATTAATT
39148 TATCATAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATTAATTATTAATAATAA
Found at i:39573 original size:10 final size:10
Alignment explanation
Indices: 39558--39596 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
39548 ATTAACACTA
39558 AATAATTAAT
1 AATAATTAAT
39568 AATAATTAAT
1 AATAATTAAT
*
39578 AATATTTTAATT
1 AATA-ATTAA-T
39590 AATAATT
1 AATAATT
39597 TAATTAGCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 14 0.56
11 6 0.24
12 5 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AATAATTAAT
Found at i:40688 original size:11 final size:11
Alignment explanation
Indices: 40621--40708 Score: 56
Period size: 11 Copynumber: 7.9 Consensus size: 11
40611 GTTAATAACA
40621 TAATTATTATT
1 TAATTATTATT
**
40632 TAAAAATTATT
1 TAATTATTATT
* *
40643 TATTTATT-TA
1 TAATTATTATT
40653 TACATATAGTTAATT
1 TA-AT-TA-TT-ATT
*
40668 AAATTA-TATT
1 TAATTATTATT
40678 TAATTATTATT
1 TAATTATTATT
40689 TAATTA-TATT
1 TAATTATTATT
* *
40699 AAAATATTAT
1 TAATTATTAT
40709 ATAACAAAAC
Statistics
Matches: 58, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
10 19 0.33
11 29 0.50
12 2 0.03
13 4 0.07
14 2 0.03
15 2 0.03
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (11 bp):
TAATTATTATT
Found at i:42296 original size:21 final size:21
Alignment explanation
Indices: 42279--42320 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
42269 ATTTATTAGT
42279 ACATTATAATAATATATTATA
1 ACATTATAATAATATATTATA
* *
42300 ATATTATAATAAAATAGTTAT
1 ACATTATAATAATATA-TTAT
42321 TTTATTTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
ACATTATAATAATATATTATA
Found at i:42494 original size:10 final size:9
Alignment explanation
Indices: 42473--42533 Score: 51
Period size: 9 Copynumber: 7.1 Consensus size: 9
42463 CAAATTAAAT
*
42473 TAATATAAA
1 TAATATATA
42482 TAATAATATA
1 TAAT-ATATA
42492 TAATATATA
1 TAATATATA
*
42501 TTATAT-TA
1 TAATATATA
42509 TGAATATAT-
1 T-AATATATA
42518 T--TATATA
1 TAATATATA
42525 TAAT-TATA
1 TAATATATA
42533 T
1 T
42534 GTTATTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
6 5 0.12
7 1 0.02
8 8 0.19
9 20 0.47
10 9 0.21
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (9 bp):
TAATATATA
Found at i:42532 original size:16 final size:16
Alignment explanation
Indices: 42471--42533 Score: 64
Period size: 14 Copynumber: 4.1 Consensus size: 16
42461 ATCAAATTAA
42471 ATTA-ATATAA-ATA-
1 ATTATATATAATATAT
*
42484 ATAATATATAATATAT
1 ATTATATATAATATAT
42500 ATTATATTATGAATATAT
1 ATTATA-TAT-AATATAT
42518 -TTATATATAAT-TAT
1 ATTATATATAATATAT
42532 AT
1 AT
42534 GTTATTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
13 3 0.07
14 9 0.21
15 7 0.17
16 8 0.19
17 8 0.19
18 7 0.17
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
ATTATATATAATATAT
Found at i:43621 original size:181 final size:180
Alignment explanation
Indices: 42539--43716 Score: 800
Period size: 181 Copynumber: 6.6 Consensus size: 180
42529 TATATGTTAT
* * * * *
42539 TTTTTAAATCTCTTAGTTATTAATTTTTAG-AATATTATTATATTAGTATCATTTTATTTCAAAT
1 TTTTTAAATCTC-TACTTATTAATTTTTAGAAATATTAATAAATTAGTATTATTTTATTCCAAAT
* * * * * *
42603 AAACTTGTGTGAATAGAAATAATTGTTTTATGA-GATAACAAAAGGTTATAACA-ATTTGAAATA
65 AAGCTTGTATGAATAGAAACAATTGTTTTATGACTA-AACAAAAGATCATAA-AGATTTGAAATA
* ** * *
42666 TATAATTGTTCAAATAGTCATAACTATTTGAA-TTGGTTCAGTAAACAGATTAA
128 GATAATTGTTCAAATAGTCATAACTATTTGAACTTAATT-GGTAAACAGATTTA
* * * *
42719 CTTTTTTAATCT-T--TTATTAATTTTT-GAAATATTAGTAAATTAATATTATTTTATTCTAAAT
1 -TTTTTAAATCTCTACTTATTAATTTTTAGAAATATTAATAAATTAGTATTATTTTATTCCAAAT
* * *
42780 AGGCTTGTAATG-AT-GAAACAATT-TTTTATGACAAAACAAAAGTTCAT-AAGATTTGAAATAG
65 AAGCTTGT-ATGAATAGAAACAATTGTTTTATGACTAAACAAAAGATCATAAAGATTTGAAATAG
** * * * * * * **
42841 ATAATTAATCAAAAAATGGTCATAATTATTTTAAATAAATTTGATAAATTGATTTATA
129 ATAATTGTTC---AAATAGTCATAACTATTTGAACTTAA-TTGGTAAACAGA-TT-TA
* * * *** * **
42899 TTTTTAAAAACTCCAACTTCTTAATTTTT-GAAATATTAATAAGCAAATATTATTTTATTTTGGA
1 TTTTT-AAATCT-CTACTTATTAATTTTTAGAAATATTAATAAATTAGTATTATTTTA--TTCCA
* * * * * *
42963 AA-AA-CTTTTATGTACCT-GAAACAATTTGTTTTCAT-AATAAAATAAAAGGTCATAATGATTT
62 AATAAGCTTGTATG-A-ATAGAAACAA-TTGTTTT-ATGACT-AAACAAAAGATCATAAAGATTT
* * * *
43024 TAAATAGATAATTGTTC-AATAGTCCATAACTATTTGAACTTATTTGCTAATC-GATTT-
122 GAAATAGATAATTGTTCAAATAGT-CATAACTATTTGAACTTAATTGGTAAACAGATTTA
** * * * *
43081 TTTAAAAAT-T-T-CTTATTAATTTTCT--AAATTTTAATAAATTAGTATTACTATATTTCAAAT
1 TTTTTAAATCTCTACTTATTAATTTT-TAGAAATATTAATAAATTAGTATTATTTTATTCCAAAT
* * * * *
43141 AAGCATGTATGAACAGAAACAATTATTTT-TGACTAAACAAAAGATCA-AAATAATATGAAATAG
65 AAGCTTGTATGAATAGAAACAATTGTTTTATGACTAAACAAAAGATCATAAA-GATTTGAAATAG
* * * ** *
43204 ATAATTGTTCTAATAGTCTTAACTATTTGAA-TTACTTTGAAAAACACATTTA
129 ATAATTGTTCAAATAGTCATAACTATTTGAACTTA-ATTGGTAAACAGATTTA
* **
43256 TTTTTAAA--TC--CTTATTAATTTTT-GAAATCA-TAATAAATTGGTATTATTTTATTCTGAAT
1 TTTTTAAATCTCTACTTATTAATTTTTAGAAAT-ATTAATAAATTAGTATTATTTTATTCCAAAT
** * * * * *
43315 AATTTTATATGAATAG-AACAAATATTTTAT-AATAAAATAAAATG-TCATAACA-ATTTGAAAT
65 AAGCTTGTATGAATAGAAACAATTGTTTTATGACT-AAACAAAA-GATCATAA-AGATTTGAAAT
* ** * * * * * *
43376 AAATAACAGTTCAAATGGACATGACAATTTGAACTTATTTGGTAAACATATTTA
127 AGATAATTGTTCAAATAGTCATAACTATTTGAACTTAATTGGTAAACAGATTTA
* *
43430 TTTCTTAAATCTCTAACTTATTAATTTTTAG-AATAATAATAAATTAGTATTACTTTATTCCAAA
1 TTT-TTAAATCTCT-ACTTATTAATTTTTAGAAATATTAATAAATTAGTATTATTTTATTCCAAA
** * * *
43494 TAAATTTGTGTGAATAGAAATAATTGTTTTATGACTAAACAAAAGATCATAAAGATTTGAAATAT
64 TAAGCTTGTATGAATAGAAACAATTGTTTTATGACTAAACAAAAGATCATAAAGATTTGAAATAG
* ** * * *
43559 ATAATTGTTCAAATAGTAATAACTATTTGAACTTGCTCGGTTAACAAATTTA
129 ATAATTGTTCAAATAGTCATAACTATTTGAACTTAATTGGTAAACAGATTTA
* * * *
43611 TTATTTAAATCTTTTACTTATTAA-TTTTAGAAATATTAATAAATTAATATTATTTTATTTCGAA
1 TT-TTTAAATC-TCTACTTATTAATTTTTAGAAATATTAATAAATTAGTATTATTTTATTCCAAA
* *
43675 TAAGCTTGTATGAATAGAAATAATTAG-TTTATGACAAAACAA
64 TAAGCTTGTATGAATAGAAACAATT-GTTTTATGACTAAACAA
43717 TTTGAAATAG
Statistics
Matches: 781, Mismatches: 154, Indels: 124
0.74 0.15 0.12
Matches are distributed among these distances:
172 5 0.01
173 66 0.08
174 142 0.18
175 47 0.06
176 21 0.03
177 105 0.13
178 10 0.01
179 11 0.01
180 68 0.09
181 170 0.22
182 9 0.01
183 4 0.01
184 41 0.05
185 3 0.00
186 24 0.03
187 16 0.02
188 5 0.01
189 14 0.02
190 20 0.03
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (180 bp):
TTTTTAAATCTCTACTTATTAATTTTTAGAAATATTAATAAATTAGTATTATTTTATTCCAAATA
AGCTTGTATGAATAGAAACAATTGTTTTATGACTAAACAAAAGATCATAAAGATTTGAAATAGAT
AATTGTTCAAATAGTCATAACTATTTGAACTTAATTGGTAAACAGATTTA
Found at i:44459 original size:21 final size:20
Alignment explanation
Indices: 44415--44461 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 20
44405 AATACTTTTG
44415 TAATATTATTTTATAAATTAT
1 TAATATTATTTTAT-AATTAT
44436 TAATATATATTTTAT-ATTATT
1 TAATAT-TATTTTATAATTA-T
44457 TAATA
1 TAATA
44462 AAATTATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.17
21 12 0.50
22 8 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TAATATTATTTTATAATTAT
Found at i:45171 original size:15 final size:16
Alignment explanation
Indices: 45142--45172 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45132 AAATTTATAA
45142 TTAATTATAATATTAT
1 TTAATTATAATATTAT
45158 TTAATTAT-ATATTAT
1 TTAATTATAATATTAT
45173 AAATATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAATTATAATATTAT
Found at i:45328 original size:15 final size:15
Alignment explanation
Indices: 45281--45415 Score: 51
Period size: 15 Copynumber: 9.2 Consensus size: 15
45271 TATAATAAAG
45281 ATAT-ATATTAAATTT
1 ATATAATATTAAA-TT
*
45296 ATTATAATTATCTTAATT
1 A-TATAA-TAT-TAAATT
45314 ATATAATATTAAATT
1 ATATAATATTAAATT
*
45329 -T-T-A-ATTAGA--
1 ATATAATATTAAATT
*
45338 ATATAAT-TGAAAATT
1 ATATAATAT-TAAATT
45353 ATATTAATATT-AATT
1 ATA-TAATATTAAATT
45368 A-AGTAATATTAAATT
1 ATA-TAATATTAAATT
* *
45383 AAATAA-ATTAATACT
1 ATATAATATTAA-ATT
*
45398 ATATTA-ATTAATATT
1 ATATAATATTAA-ATT
45413 ATA
1 ATA
45416 AGATTATTAA
Statistics
Matches: 93, Mismatches: 11, Indels: 32
0.68 0.08 0.24
Matches are distributed among these distances:
10 1 0.01
11 6 0.06
12 3 0.03
13 3 0.03
14 14 0.15
15 39 0.42
16 11 0.12
17 7 0.08
18 6 0.06
19 3 0.03
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (15 bp):
ATATAATATTAAATT
Found at i:45376 original size:14 final size:14
Alignment explanation
Indices: 45357--45394 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
45347 AAAATTATAT
*
45357 TAATATTAATTAAG
1 TAATATTAATTAAA
45371 TAATATTAAATTAAA
1 TAATATT-AATTAAA
45386 TAA-ATTAAT
1 TAATATTAAT
45395 ACTATATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 3 0.14
14 10 0.45
15 9 0.41
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
TAATATTAATTAAA
Found at i:45442 original size:16 final size:17
Alignment explanation
Indices: 45423--45460 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
45413 ATAAGATTAT
*
45423 TAATTAATAACT-AATA
1 TAATTAATAAATAAATA
45439 TAATT-ATAAATAAATA
1 TAATTAATAAATAAATA
45455 TAATTA
1 TAATTA
45461 TAATAGTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
TAATTAATAAATAAATA
Found at i:45687 original size:44 final size:43
Alignment explanation
Indices: 45588--45696 Score: 107
Period size: 44 Copynumber: 2.5 Consensus size: 43
45578 ATTATAGCTT
* *
45588 ATACTATTAGA-TAATAATATAATTTTATAATTTATTTAATAAA
1 ATACTATTATATTAATAATATAATTTCAT-ATTTATTTAATAAA
**
45631 ATACTAAAATATTAATAATATGAA-TTCAT-TTTATTTTAATATAA
1 ATACTATTATATTAATAATAT-AATTTCATATTTA-TTTAATA-AA
* *
45675 ATACTATTATATTTATTATATA
1 ATACTATTATATTAATAATATA
45697 TTAATTAATT
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
42 4 0.07
43 16 0.30
44 32 0.59
45 2 0.04
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.48
Consensus pattern (43 bp):
ATACTATTATATTAATAATATAATTTCATATTTATTTAATAAA
Found at i:45719 original size:12 final size:11
Alignment explanation
Indices: 45679--45756 Score: 51
Period size: 12 Copynumber: 7.3 Consensus size: 11
45669 ATATAAATAC
45679 TATTAT-ATT-
1 TATTATAATTA
45688 TATTATATATTA
1 TATTATA-ATTA
45700 -A-T-TAATTA
1 TATTATAATTA
45708 TATCTATAATTA
1 TAT-TATAATTA
*
45720 TAATTATGATTA
1 T-ATTATAATTA
45732 T-TTATAATTA
1 TATTATAATTA
* *
45742 GTAATATTATTA
1 -TATTATAATTA
45754 TAT
1 TAT
45757 AAATTAATTA
Statistics
Matches: 54, Mismatches: 5, Indels: 18
0.70 0.06 0.23
Matches are distributed among these distances:
8 4 0.07
9 9 0.17
10 9 0.17
11 8 0.15
12 22 0.41
13 2 0.04
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (11 bp):
TATTATAATTA
Found at i:45737 original size:22 final size:22
Alignment explanation
Indices: 45712--45762 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
45702 TAATTATATC
*
45712 TATAATTA-TAATTATGATTATT
1 TATAATTAGTAA-TATGATTATA
*
45734 TATAATTAGTAATATTATTATA
1 TATAATTAGTAATATGATTATA
45756 TA-AATTA
1 TATAATTA
45763 ATTAGCGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 5 0.19
22 18 0.69
23 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (22 bp):
TATAATTAGTAATATGATTATA
Found at i:47051 original size:25 final size:25
Alignment explanation
Indices: 47014--47084 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 25
47004 TTATTATGAT
* *
47014 TATAATTAATATATTTTTAAATATT-
1 TATAA-TATTATATTATTAAATATTA
*
47039 TATCAATATTATATAATTAAATATTAA
1 TAT-AATATTATATTATTAAATATT-A
47066 TATAATATTAATATTATTA
1 TATAATATT-ATATTATTA
47085 TTAATTAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
25 19 0.50
26 8 0.21
27 11 0.29
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (25 bp):
TATAATATTATATTATTAAATATTA
Found at i:47077 original size:6 final size:6
Alignment explanation
Indices: 47043--47089 Score: 51
Period size: 6 Copynumber: 7.5 Consensus size: 6
47033 AATATTTATC
*
47043 AATATT ATATAATT AAATATT AATA-T AATATT AATATT ATTATT AAT
1 AATATT A-AT-ATT -AATATT AATATT AATATT AATATT AATATT AAT
47090 TAATAGTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
5 5 0.14
6 19 0.54
7 5 0.14
8 5 0.14
9 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
AATATT
Found at i:47114 original size:11 final size:12
Alignment explanation
Indices: 47043--47116 Score: 64
Period size: 11 Copynumber: 6.1 Consensus size: 12
47033 AATATTTATC
47043 AATATTATATAATT
1 AATATTA-ATAA-T
47057 AAATATTAAT-AT
1 -AATATTAATAAT
*
47069 AATATTAATATT
1 AATATTAATAAT
*
47081 ATTATTAATTAAT
1 AATATTAA-TAAT
*
47094 AGT-TTAATAAT
1 AATATTAATAAT
47105 AATA-TAATAAT
1 AATATTAATAAT
47116 A
1 A
47117 CCATTTAATT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
11 23 0.45
12 13 0.25
13 6 0.12
14 2 0.04
15 7 0.14
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (12 bp):
AATATTAATAAT
Found at i:47172 original size:10 final size:10
Alignment explanation
Indices: 47139--47181 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
47129 TTAAATGATA
47139 ATAATTAAAT
1 ATAATTAAAT
* *
47149 ATAGTT-TAT
1 ATAATTAAAT
*
47158 ATAATTAATT
1 ATAATTAAAT
47168 ATAATTAAAT
1 ATAATTAAAT
47178 ATAA
1 ATAA
47182 AACTAATTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (10 bp):
ATAATTAAAT
Found at i:47778 original size:177 final size:178
Alignment explanation
Indices: 47494--47829 Score: 432
Period size: 177 Copynumber: 1.9 Consensus size: 178
47484 ATTAATATAA
* *
47494 GTTATGACTAGTTGAACAATTATCTATCTCAAATCATAATGATCTTTATTTTGCCATACAACAAT
1 GTTAAGACTAGTTGAACAATTATCTATCTCAAATCATAATGATCTTTATTTTGCCATAAAACAAT
* ** * * *
47559 TGTTTCCTTTCATACAAGCTTATTCGGATTAAAATGATACTAATTTAATAATATTTC-AAAAATT
66 TATTTCAGTTCATACAAGCTTATTCGGAATAAAATAATACTAA-TTAATAACA-TTCAAAAAATT
*
47623 -AA-TAAGAGA-TTTAAAAAATAAATATGTTAGCCGAACTAGTTCAAATT
129 AAAGGAAGAGATTTTAAAAAATAAATATGTTAGCCGAACTAGTTCAAATT
* * ** * *
47670 GTTAAGACTA-TTAGAATAATTATCTATTTCAAATCATTCT-ATCTTTTTGTTTAGTCATAAAAC
1 GTTAAGACTAGTT-GAACAATTATCTATCTCAAATCATAATGATCTTTAT-TTT-GCCATAAAAC
* *
47733 AATTATTTCAGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTATTAACATTCAAAAAAT
63 AATTATTTCAGTTCATACAAGCTTATTCGGAATAAAATAATACTAATTAATAACATTCAAAAAAT
47798 TAAAGGAAGAGATTTTAAAAAATAAATATGTT
128 TAAAGGAAGAGATTTTAAAAAATAAATATGTT
47830 TACTGAATAA
Statistics
Matches: 136, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
175 12 0.09
176 49 0.36
177 50 0.37
178 6 0.04
179 19 0.14
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.38
Consensus pattern (178 bp):
GTTAAGACTAGTTGAACAATTATCTATCTCAAATCATAATGATCTTTATTTTGCCATAAAACAAT
TATTTCAGTTCATACAAGCTTATTCGGAATAAAATAATACTAATTAATAACATTCAAAAAATTAA
AGGAAGAGATTTTAAAAAATAAATATGTTAGCCGAACTAGTTCAAATT
Found at i:47908 original size:178 final size:177
Alignment explanation
Indices: 47542--47909 Score: 424
Period size: 178 Copynumber: 2.1 Consensus size: 177
47532 ATGATCTTTA
* * * ** * *
47542 TTTTGCCATACAACAATTGTTTCCTTTCATACAAGCTTATTCGGATTAAAATGATACTAATTTAA
1 TTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCGGAATAAAATAATACTAATTTAA
* * *
47607 TAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATATGTTAGCCGAACTAGTTCAAATTGT
66 TAACATTTCAAAAATTAAGAAGAGATTTAAAAAATAAATATGTTAGCCGAACTAGTTCAAATTGA
* * * * *
47672 TAAGACTATTAGAATAATTATCTATTTCAAATCATTCTATCTTTTTG
131 TAAGACTATTAGAACAATTAACTATTTAAAATCATTCTAACATTTTG
* * *
47719 TTTAGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTTGGAATAAAATAATACTAA-TTAT
1 TTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCGGAATAAAATAATACTAATTTAA
* *
47783 TAACA-TTCAAAAAATTAAAGGAAGAGATTTTAAAAAATAAATATGTTTA-CTGAA-TAATTTCA
66 TAACATTTC-AAAAATT-AA-GAAGAGA-TTTAAAAAATAAATATG-TTAGCCGAACT-AGTTCA
* * *
47845 AATT-ATATGACTATTTA-AACAATTAACTATTTAAAATTATTTTAACATTTTG
125 AATTGATAAGACTA-TTAGAACAATTAACTATTTAAAATCATTCTAACATTTTG
47897 TTTTGTCATAAAA
1 TTTTGTCATAAAA
47910 TAATACTACT
Statistics
Matches: 160, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
175 3 0.02
176 14 0.09
177 53 0.33
178 54 0.34
179 33 0.21
180 3 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.39
Consensus pattern (177 bp):
TTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCGGAATAAAATAATACTAATTTAA
TAACATTTCAAAAATTAAGAAGAGATTTAAAAAATAAATATGTTAGCCGAACTAGTTCAAATTGA
TAAGACTATTAGAACAATTAACTATTTAAAATCATTCTAACATTTTG
Found at i:48243 original size:499 final size:494
Alignment explanation
Indices: 47493--48406 Score: 1182
Period size: 497 Copynumber: 1.8 Consensus size: 494
47483 TATTAATATA
* * *
47493 AGTTATGACTAGTTGAACAATTATCTATCTCAAATCATAATGATCTTTATTTTGCCATACAACAA
1 AGTTATAACTAGTTGAACAAATATCTATCTCAAATCATAATGATCGTTATTTTGCCATACAACAA
* * * * * *
47558 TTGTTTCCTTTCATACAAGCTTATTCGGATTAAAATGATACTAATTTAATAATATTTCAAAAATT
66 TTATTT-CTTTCATACAAGCTTATTCAGATAAAAATAATACTAATTTAATAATATTTAAAAAAAT
* *
47623 AATAAGAGATTTAAAAAATAAATATGTTAGCCGAACTAGTTCAAATTGTTAAGACTATTAGAATA
130 AATAAGAGATTTAAAAAATAAATATGTTAGCCGAACTAATTCAAATAGTTAAGACTATTAGAATA
* * *
47688 ATTATCTATTTCAAATCATTCTATCTTTTTGTTTAGTCATAAAACAATTATTTCAGTTCATACAA
195 ATTATCTATTTCAAATCATTCTATCCTTTTGTTTAATCATAAAACAATTATTTCAGTTCACACAA
* * * * *
47753 GCTTATTTGGAATAAAATAATACTAA-TTATTAACATTCAAAAAATTAAAGGAAGAGATTTTAAA
260 GCATATTTGAAAGAAAATAATACTAATTTATTAAC-TTC--AAAATT-AAGCAAGAGATTTGAAA
* * * * *
47817 AAATAAATATGTTTACTGAATAATTTCAAATTA-TATGACTATTTAAACAATTAACTATTTAAAA
321 AAATAAATATGTTTACCGAACAAGTTCAAATAATTATGACTATTTAAACAATTAACAATTTAAAA
*
47881 TTATT-TTAACATTTTGTTTTGTCATAAAATAATACTACTTTATTAATATTTCAAAAATTATGAA
386 TTATTGTGAA-ATTTTGTTTTGTCATAAAATAATACTACTTTATTAATATTTCAAAAATTATGAA
47945 GCAAGAGATTTAAAAACTAAAGTTGTTTTTCAAAGCAGTTCTAAT
450 GCAAGAGATTTAAAAACTAAAGTTGTTTTTCAAAGCAGTTCTAAT
* * * *
47990 AGTTATAACTATTTGAACAAATAT-TAATCTCAAATCGTTATGATCGTTATTTTGTCATTA-AAC
1 AGTTATAACTAGTTGAACAAATATCT-ATCTCAAATCATAATGATCGTTATTTTGCCA-TACAAC
*
48053 AATTATTT-TTATCATATAAG-TTGATTCAGATAAAAATAATACTAATTTAATAATATTTTAAAG
64 AATTATTTCTT-TCATACAAGCTT-ATTCAGATAAAAATAATACTAATTTAATAATA-TTTAAA-
* * *
48116 ATAAATAAGTAAGAGATTTAAAAAATAAATGTGTTTGCC-AA-TCAATTCAAATAGTTAAGATTA
125 A-AAATAA-TAAGAGATTTAAAAAATAAATATGTTAGCCGAACT-AATTCAAATAGTTAAGACTA
* * * *
48179 TTAGATTAATTATCTATTTCAAATCATTTTGA-CCTTTTGTTTAATCATAAAATAATTGTTTCAG
187 TTAGAATAATTATCTATTTCAAATCATTCT-ATCCTTTTGTTTAATCATAAAACAATTATTTCAG
** * *
48243 TTCACACAAGCATATTTGAAAGAAAATAATACTAATTTATTAACTTCTGAATTAATCAAGATATT
251 TTCACACAAGCATATTTGAAAGAAAATAATACTAATTTATTAACTTCAAAATTAAGCAAGAGATT
* * * * *
48308 TGAAAAACTAAATTTGTTTACCGAGCAAGTTCAAATAATTATGACTATTTGAACAATTATCAATT
316 TGAAAAAATAAATATGTTTACCGAACAAGTTCAAATAATTATGACTATTTAAACAATTAACAATT
* *
48373 TAAAATTGTTGTGAATTTTTGTTTTGTCATAAAA
381 TAAAATTATTGTGAAATTTTGTTTTGTCATAAAA
48407 CAATTGTTGT
Statistics
Matches: 356, Mismatches: 48, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
495 4 0.01
496 77 0.22
497 117 0.33
498 7 0.02
499 114 0.32
500 37 0.10
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.39
Consensus pattern (494 bp):
AGTTATAACTAGTTGAACAAATATCTATCTCAAATCATAATGATCGTTATTTTGCCATACAACAA
TTATTTCTTTCATACAAGCTTATTCAGATAAAAATAATACTAATTTAATAATATTTAAAAAAATA
ATAAGAGATTTAAAAAATAAATATGTTAGCCGAACTAATTCAAATAGTTAAGACTATTAGAATAA
TTATCTATTTCAAATCATTCTATCCTTTTGTTTAATCATAAAACAATTATTTCAGTTCACACAAG
CATATTTGAAAGAAAATAATACTAATTTATTAACTTCAAAATTAAGCAAGAGATTTGAAAAAATA
AATATGTTTACCGAACAAGTTCAAATAATTATGACTATTTAAACAATTAACAATTTAAAATTATT
GTGAAATTTTGTTTTGTCATAAAATAATACTACTTTATTAATATTTCAAAAATTATGAAGCAAGA
GATTTAAAAACTAAAGTTGTTTTTCAAAGCAGTTCTAAT
Found at i:48795 original size:21 final size:22
Alignment explanation
Indices: 48748--48824 Score: 54
Period size: 21 Copynumber: 3.7 Consensus size: 22
48738 ATATTTAATT
48748 TTATTATATATAATTCTTTAAA
1 TTATTATATATAATTCTTTAAA
* * * *
48770 GTATTA-ATTTAATTTTTTTAA
1 TTATTATATATAATTCTTTAAA
* ** *
48791 TTATT-T-TAAAATAATTAAAA
1 TTATTATATATAATTCTTTAAA
48811 TTATT-TATATAATT
1 TTATTATATATAATT
48825 AAAATTAATA
Statistics
Matches: 40, Mismatches: 13, Indels: 5
0.69 0.22 0.09
Matches are distributed among these distances:
20 14 0.35
21 21 0.52
22 5 0.12
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (22 bp):
TTATTATATATAATTCTTTAAA
Found at i:48822 original size:18 final size:17
Alignment explanation
Indices: 48801--48858 Score: 61
Period size: 18 Copynumber: 3.5 Consensus size: 17
48791 TTATTTTAAA
48801 ATAATTAAAATTATTTAT
1 ATAATT-AAATTATTTAT
48819 ATAATTAAA--A-TTA-
1 ATAATTAAATTATTTAT
*
48832 ATAATCTAATTTATTTAT
1 ATAAT-TAAATTATTTAT
48850 ATAATTAAA
1 ATAATTAAA
48859 ATTAATTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
13 5 0.15
14 6 0.18
15 1 0.03
16 1 0.03
17 9 0.27
18 11 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
ATAATTAAATTATTTAT
Found at i:48826 original size:27 final size:28
Alignment explanation
Indices: 48796--48872 Score: 104
Period size: 31 Copynumber: 2.7 Consensus size: 28
48786 TTTAATTATT
48796 TTAAAA-TAATTAAAATTATTTATATAA
1 TTAAAATTAATTAAAATTATTTATATAA
48823 TTAAAATTAA-TAATCTAATTTATTTATATAA
1 TTAAAATTAATTAA---AA-TTATTTATATAA
48854 TTAAAATTAATTAAAATTA
1 TTAAAATTAATTAAAATTA
48873 ACTGAATTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
27 9 0.20
28 6 0.14
29 2 0.05
30 2 0.05
31 22 0.50
32 3 0.07
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (28 bp):
TTAAAATTAATTAAAATTATTTATATAA
Found at i:49401 original size:21 final size:20
Alignment explanation
Indices: 49371--49424 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 20
49361 TTATTATTTA
49371 ATAA-AGATTAAAATATTAATT
1 ATAATAGATTAAAATA--AATT
*
49392 ATAAT-TATT-AAATAAATT
1 ATAATAGATTAAAATAAATT
49410 ATAATAGATTAAAAT
1 ATAATAGATTAAAAT
49425 TTGTATTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 9 0.32
19 3 0.11
20 9 0.32
21 7 0.25
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (20 bp):
ATAATAGATTAAAATAAATT
Found at i:49542 original size:23 final size:22
Alignment explanation
Indices: 49515--49563 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
49505 AAATACTAAT
* *
49515 TAATACTTTATTAATAATTAAGA
1 TAATACTATATTAATAA-TAACA
*
49538 TAATACTATATTTATAATAACA
1 TAATACTATATTAATAATAACA
49560 TAAT
1 TAAT
49564 TATTTAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (22 bp):
TAATACTATATTAATAATAACA
Found at i:49626 original size:23 final size:23
Alignment explanation
Indices: 49560--49634 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 23
49550 TATAATAACA
*
49560 TAATTATTTAGTTTTATATTTAAT
1 TAATTATTTATTTTTA-ATTTAAT
* * * *
49584 TAATTAATGATTATCT-ATTTACT
1 TAATTATTTATT-TTTAATTTAAT
*
49607 TAATTATTTATTTTTAATTTAAA
1 TAATTATTTATTTTTAATTTAAT
49630 TAATT
1 TAATT
49635 GCAATAGTTT
Statistics
Matches: 39, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
22 2 0.05
23 26 0.67
24 9 0.23
25 2 0.05
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (23 bp):
TAATTATTTATTTTTAATTTAAT
Found at i:49770 original size:16 final size:15
Alignment explanation
Indices: 49735--49763 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49725 GATTATTAAA
49735 ATTAAATAAAATAAT
1 ATTAAATAAAATAAT
49750 ATTAAA-AAAATAAT
1 ATTAAATAAAATAAT
49764 TTATTAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATTAAATAAAATAAT
Found at i:51295 original size:14 final size:15
Alignment explanation
Indices: 51254--51370 Score: 59
Period size: 18 Copynumber: 7.5 Consensus size: 15
51244 ATGTAATAAT
51254 TTAATAA-ATTATTA
1 TTAATAATATTATTA
51268 -TAATTAA-A-TATTA
1 TTAA-TAATATTATTA
51281 TTAATAATATT-TTA
1 TTAATAATATTATTA
* *
51295 TGAATCATATTAATTA
1 TTAATAATATT-ATTA
51311 TT-ATAATATGTAATTA
1 TTAATAATAT-T-ATTA
*
51327 -TAATTGTATATTATATA
1 TTAA-T-AATATTAT-TA
51344 TTATATAATAATTATTTA
1 TTA-ATAAT-ATTA-TTA
51362 TTATATAAT
1 TTA-ATAAT
51371 TTAATTGGAC
Statistics
Matches: 82, Mismatches: 6, Indels: 26
0.72 0.05 0.23
Matches are distributed among these distances:
13 11 0.13
14 20 0.24
15 8 0.10
16 13 0.16
17 6 0.07
18 22 0.27
19 2 0.02
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (15 bp):
TTAATAATATTATTA
Found at i:51328 original size:13 final size:13
Alignment explanation
Indices: 51309--51341 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
51299 TCATATTAAT
51309 TATTATAATATGTA
1 TATTATAAT-TGTA
51323 -ATTATAATTGTA
1 TATTATAATTGTA
51335 TATTATA
1 TATTATA
51342 TATTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (13 bp):
TATTATAATTGTA
Found at i:51354 original size:25 final size:25
Alignment explanation
Indices: 51309--51368 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
51299 TCATATTAAT
* *
51309 TATTATAATATGTAATTATAATTGTA
1 TATTAT-ATATGTAATAATAATTATA
*
51335 TATTATATAT-TATATAATAATTATT
1 TATTATATATGTA-ATAATAATTATA
51360 TATTATATA
1 TATTATATA
51369 ATTTAATTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.07
25 22 0.73
26 6 0.20
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (25 bp):
TATTATATATGTAATAATAATTATA
Found at i:51363 original size:18 final size:18
Alignment explanation
Indices: 51336--51370 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51326 ATAATTGTAT
51336 ATTATATATTATATAATA
1 ATTATATATTATATAATA
*
51354 ATTATTTATTATATAAT
1 ATTATATATTATATAAT
51371 TTAATTGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATATATTATATAATA
Found at i:51469 original size:13 final size:12
Alignment explanation
Indices: 51423--51474 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
51413 ATTGTTTGAC
51423 AATAATAGTTAAT
1 AATAATA-TTAAT
51436 AA-AATATTAAT
1 AATAATATTAAT
51447 AATAACTATTAACT
1 AATAA-TATTAA-T
*
51461 ATTAATATT-AT
1 AATAATATTAAT
51472 AAT
1 AAT
51475 TAATTATAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
11 10 0.29
12 7 0.21
13 12 0.35
14 5 0.15
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:51774 original size:7 final size:7
Alignment explanation
Indices: 51751--51792 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
51741 ATATACTGAA
51751 TAATAAT
1 TAATAAT
*
51758 TTATAA-
1 TAATAAT
51764 TAATAAT
1 TAATAAT
*
51771 TAATTAT
1 TAATAAT
*
51778 TATTAAT
1 TAATAAT
51785 TAATAAT
1 TAATAAT
51792 T
1 T
51793 TAATTACTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (7 bp):
TAATAAT
Found at i:52476 original size:17 final size:17
Alignment explanation
Indices: 52450--52504 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
52440 TTAATTTTAA
52450 AAATAATTAATATTATT
1 AAATAATTAATATTATT
* *
52467 AAATAGTTAATAGTATT
1 AAATAATTAATATTATT
* *
52484 TAATACTATAATATATATT
1 AAATAAT-TAATAT-TATT
52503 AA
1 AA
52505 TTTTAAATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
17 20 0.67
18 5 0.17
19 5 0.17
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (17 bp):
AAATAATTAATATTATT
Found at i:53311 original size:180 final size:179
Alignment explanation
Indices: 52927--53421 Score: 494
Period size: 180 Copynumber: 2.7 Consensus size: 179
52917 AAAATAAATA
* * * * * * * *
52927 TTTTTAAATCACTTTCATATTAATTTTTCAAATGTTAATAAATTAGTATTAATTTATTCTGAATA
1 TTTTTAAATCTCTTACTTATTAAGTTTTCAAATATTATTAAATTAGTATTATTTTATTCTAAATA
* * * * * *
52992 AGCTGGTATGAACTGAAACAATTATTTTATGACT-AAACAAAAGATCAAAAATGATATGAAATAG
66 AGCTAGTATGAAC-AAAACAATTGTTTTATGA-TAAAACAAAAG-TC-ATAATGATTTGAAATAA
* * *
53056 ATAATTATTCTAATAATTTTAACCATTTGAATTGATTCAGTAAACAAATTTAT
127 ATAATCATTCTAAGAATTTTAACCATTTGAATGGATTCAGTAAACAAATTTAT
*
53109 TTTTTAAATCTCTTACTTATTAA-TTTTCAAAATATTATTAAATTAGTATTATTTTAATCTAAAT
1 TTTTTAAATCTCTTACTTATTAAGTTTTC-AAATATTATTAAATTAGTATTATTTTATTCTAAAT
* * * *
53173 AAGCTTGTATGAACAAAACAATTGTTTTACGTTAAAAGAAAATGTCATAATGATTTGAAATAAAT
65 AAGCTAGTATGAACAAAACAATTGTTTTATGATAAAACAAAA-GTCATAATGATTTGAAATAAAT
* * * * ** *
53238 AATCATTCCT-AGAGTTTTAACTATTTGAACTGGTTTGA-TAATTAGATTTAT
129 AATCATT-CTAAGAATTTTAACCATTTGAA-TGGATTCAGTAAACAAATTTAT
* * ** *
53289 TTTTTAATTTTCTTGGTTATTAAGTTTTGAAATATTATTAAATTAGTATTATTTTATTCTAAATA
1 TTTTTAAATCTCTTACTTATTAAGTTTTCAAATATTATTAAATTAGTATTATTTTATTCTAAATA
** * * * * * *
53354 AAATAGTATGAATAGAACCAATTGTTTGATGATAAAATAAAAGGTTATAACGATTTGAAATAAAT
66 AGCTAGTATGAACA-AAACAATTGTTTTATGATAAAACAAAA-GTCATAATGATTTGAAATAAAT
53419 AAT
129 AAT
53422 TATTGAAATA
Statistics
Matches: 261, Mismatches: 45, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
180 113 0.43
181 84 0.32
182 64 0.25
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (179 bp):
TTTTTAAATCTCTTACTTATTAAGTTTTCAAATATTATTAAATTAGTATTATTTTATTCTAAATA
AGCTAGTATGAACAAAACAATTGTTTTATGATAAAACAAAAGTCATAATGATTTGAAATAAATAA
TCATTCTAAGAATTTTAACCATTTGAATGGATTCAGTAAACAAATTTAT
Found at i:53505 original size:181 final size:179
Alignment explanation
Indices: 53103--53561 Score: 465
Period size: 181 Copynumber: 2.5 Consensus size: 179
53093 CAGTAAACAA
* * *
53103 ATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTAATC
1 ATTTATTTTTTAAATCTCTTGCTTATTAATTTT-GAAATATTATTAAATTAGTATTATTTTATTC
** * * * * *
53168 TAAATAAGCTTGTATGAACAAAACAATTGTTTTACGTTAAAAGAAAATGTCATAATGATTTGAAA
65 TAAATAAAATAGTATGAACAAAACAATTGTTTGACGATAAAAGAAAAGGTCATAACGATTTGAAA
** *** * **
53233 TAAATAATCATTCCTAGAGTTTTAACTATTTGAACTGGTTTGATAATTAG
130 TAAATAATCATTCAAAGAGTCAAAACTATTTGAAATGGTTTGATAAGCAG
* * *
53283 ATTTATTTTTTAATTTTCTTGGTTATTAAGTTTTGAAATATTATTAAATTAGTATTATTTTATTC
1 ATTTATTTTTTAAATCTCTTGCTTATTAA-TTTTGAAATATTATTAAATTAGTATTATTTTATTC
* * * * *
53348 TAAATAAAATAGTATGAATAGAACCAATTGTTTGATGATAAAATAAAAGGTTATAACGATTTGAA
65 TAAATAAAATAGTATGAACA-AAACAATTGTTTGACGATAAAAGAAAAGGTCATAACGATTTGAA
* * * *
53413 ATAAATAATTATTGAAATAGTCAAAACTATTTGAAATGGTTTGATAAGCAT
129 ATAAATAATCATTCAAAGAGTCAAAACTATTTGAAATGGTTTGATAAGCAG
** * * ** *
53464 ATTT-TCTTTTTAAATCTCTTGCAGATTTATTTTGTAAATATTAATAAAACAATATTATTTTATT
1 ATTTAT-TTTTTAAATCTCTTGCTTATTAATTTTG-AAATATTATTAAATTAGTATTATTTTATT
* * *
53528 -TCAAACAAACTTA-TATTAACAAAAACAATTGTTT
64 CT-AAATAAA-ATAGTATGAAC-AAAACAATTGTTT
53562 TATGACAAAA
Statistics
Matches: 227, Mismatches: 45, Indels: 13
0.80 0.16 0.05
Matches are distributed among these distances:
180 77 0.34
181 147 0.65
182 3 0.01
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (179 bp):
ATTTATTTTTTAAATCTCTTGCTTATTAATTTTGAAATATTATTAAATTAGTATTATTTTATTCT
AAATAAAATAGTATGAACAAAACAATTGTTTGACGATAAAAGAAAAGGTCATAACGATTTGAAAT
AAATAATCATTCAAAGAGTCAAAACTATTTGAAATGGTTTGATAAGCAG
Found at i:54480 original size:181 final size:181
Alignment explanation
Indices: 53985--54739 Score: 741
Period size: 181 Copynumber: 4.2 Consensus size: 181
53975 GCAAAAACCT
* * * *
53985 TTGTTTTACGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCATATAGCCTTAAC
1 TTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGCCATAAC
* * * * * * * *
54050 TATTTGAATTGGTTCGATAAA-AAAAATTATTTTTTAAATCTATTAGTTATTAAATTTCATAATA
66 TATTTGAACTGATTCGATAAACTAGATTTATTTTTTAAATCTATTACTTATTAATTTTTATAATA
* * * *
54114 TTACTAGATTAGTATTATTTTATTTTGAATAAGCTTGTATGAAGATAAATAA
131 TTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGATGA-AAACAA
* * * * * *
54166 TTATTTTATGACAAAACAAAAGGTTATAATGATTGGAAAATATATAATTGTTCAAATAGTCATAA
1 TTGTTTTATGACAAAACAAAAGGTCATAACGATTTG-AAATAGATAATTGTTCAAATAGCCATAA
** **
54231 CTATTTGAACTGATAGGATAAAC-AGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCA-AA
65 CTATTTGAACTGATTCGATAAACTAGATTTATTTTTTAAATCTATTACTTATTAATTTTT-ATAA
*
54294 TATTAATAAATTAGTATTATTTTATTTTGAATAGGCTTGTATGATGAAAAACAA
129 TATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGATG-AAAACAA
* * * * * * * *
54348 TTGTTTTGTGACAAAACAAAAGTTCATTATGACTTGAAATAGATAATTGTTTAAATGGCCATAAT
1 TTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGCCATAAC
* *
54413 TATTTGAACTGATTCGATAAACTA-ATTTATGTTTTAAATCT-TTAACTTATCAATTTTTATAAT
66 TATTTGAACTGATTCGATAAACTAGATTTATTTTTTAAATCTATT-ACTTATTAATTTTTATAAT
* * * *
54476 ATTAATAAAGTAATATTATTTTA-TTTCATATAAGCTTTTATGAACTG-AAACAA
130 ATTAATAAATTAGTATTATTTTATTTTGA-ATAAGCTTGTATG-A-TGAAAACAA
* * * * * * * *
54529 TTGTTTTATAATAAAATATAAGGTCATAACGATTTTAAATAGATAATTGTTCAAATAGTCAAAAA
1 TTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGCCATAAC
* * *
54594 TATTTGAACTTG-TTCGGTAAA-TAGA-TT-TTTTTT---TCTAATTTCTTAATAATTTTT-TGA
66 TATTTGAAC-TGATTCGATAAACTAGATTTATTTTTTAAATCT-ATTACTTATTAATTTTTAT-A
* * * *
54651 ATGTTAATAAATTAGTATTATTTTATTTCGAATAAGCATGTATGAGTTG-AAGCAA
128 ATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGA--TGAAAACAA
* * * *
54706 TTATTTTATGACTAAACAAAATGTCAAAACGATT
1 TTGTTTTATGACAAAACAAAAGGTCATAACGATT
54740 ATTGATAATC
Statistics
Matches: 472, Mismatches: 85, Indels: 38
0.79 0.14 0.06
Matches are distributed among these distances:
176 5 0.01
177 78 0.17
178 5 0.01
179 5 0.01
180 10 0.02
181 213 0.45
182 152 0.32
183 4 0.01
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (181 bp):
TTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGCCATAAC
TATTTGAACTGATTCGATAAACTAGATTTATTTTTTAAATCTATTACTTATTAATTTTTATAATA
TTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGATGAAAACAA
Found at i:55448 original size:16 final size:16
Alignment explanation
Indices: 55429--55492 Score: 78
Period size: 16 Copynumber: 4.0 Consensus size: 16
55419 AAATTATTTT
55429 AATATTTAA-AATATTA
1 AATATTTAATAATA-TA
*
55445 AATATGTTATTAATAT-
1 AATAT-TTAATAATATA
55461 AATATTTAATAATATA
1 AATATTTAATAATATA
*
55477 AATAGTTAATAATATA
1 AATATTTAATAATATA
55493 TTAAATTTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
15 9 0.21
16 25 0.60
17 4 0.10
18 4 0.10
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
AATATTTAATAATATA
Found at i:55466 original size:32 final size:31
Alignment explanation
Indices: 55428--55492 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 31
55418 AAAATTATTT
*
55428 TAATATTTAA-AATATTAAATATGTTATTAATA
1 TAATATTTAATAATA-TAAATA-GTTAATAATA
55460 TAATATTTAATAATATAAATAGTTAATAATA
1 TAATATTTAATAATATAAATAGTTAATAATA
55491 TA
1 TA
55493 TTAAATTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
31 11 0.35
32 16 0.52
33 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (31 bp):
TAATATTTAATAATATAAATAGTTAATAATA
Found at i:56840 original size:19 final size:20
Alignment explanation
Indices: 56803--56840 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
56793 TTTAACAAAA
56803 TTCATAAATTATATTATTAT
1 TTCATAAATTATATTATTAT
*
56823 TTCATAACTTAT-TTATTA
1 TTCATAAATTATATTATTA
56841 ATAAATATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (20 bp):
TTCATAAATTATATTATTAT
Found at i:57242 original size:180 final size:181
Alignment explanation
Indices: 56916--57336 Score: 562
Period size: 180 Copynumber: 2.3 Consensus size: 181
56906 ATTAACATTA
* * * * * *
56916 AAAAATTAATAAGCAAAAGATATGAAAAAATAAATTTGTTTACTG-ATCAAGTTCAAATAGTTAT
1 AAAAATTAATAAGCAAGAGAT-TTAAAAAATTAATTTGTTTACTGAAT-AAATTCAAATAGCTAC
*
56980 GACTATTTGAACAATTATTTATTTAAAATCGTTATGACCTTTTGTTTTGACAAAAAACAATTGTT
64 GACTATTTGAACAATTATCTATTTAAAATCGTTATGACCTTTTGTTTTGACAAAAAACAATTGTT
* * *
57045 TCAATTCATAAAAGTTTATCCAAAATAAAATAATACTAATTTCTTAATATTTC
129 TCAATTCATAAAAGTTTATCCAAAATAAAATAAAACTAATTTATTAATATTCC
*
57098 AAAAATTAATAAGCAAGAG-TTTAAAAAATTAATTTGTTTACTGAATAAATTTAAATAGCTACGA
1 AAAAATTAATAAGCAAGAGATTTAAAAAATTAATTTGTTTACTGAATAAATTCAAATAGCTACGA
* * * * * *
57162 CTATTTGAACAATTGTCTGTTTAAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTT
66 CTATTTGAACAATTATCTATTTAAAATCGTTATGACCTTTTGTTTTGACAAAAAACAATTGTTTC
* * *
57227 AGTTCATACAAGTTTATTCAAAATAAAATAAAACTAATTTATTAATATTCC
131 AATTCATAAAAGTTTATCCAAAATAAAATAAAACTAATTTATTAATATTCC
* * * *
57278 AAAAAATAATAA-CTAAGTGATTTAAAAAGTTAATTTGTTTA-TCGAATCAATTCAAATAG
1 AAAAATTAATAAGC-AAGAGATTTAAAAAATTAATTTGTTTACT-GAATAAATTCAAATAG
57337 TCATGTCTAT
Statistics
Matches: 210, Mismatches: 25, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
179 1 0.00
180 154 0.73
181 37 0.18
182 18 0.09
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.38
Consensus pattern (181 bp):
AAAAATTAATAAGCAAGAGATTTAAAAAATTAATTTGTTTACTGAATAAATTCAAATAGCTACGA
CTATTTGAACAATTATCTATTTAAAATCGTTATGACCTTTTGTTTTGACAAAAAACAATTGTTTC
AATTCATAAAAGTTTATCCAAAATAAAATAAAACTAATTTATTAATATTCC
Found at i:57422 original size:26 final size:27
Alignment explanation
Indices: 57393--57444 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
57383 TTATTAATAA
*
57393 TTTA-TTAGTAAATATAATA-TTATATT
1 TTTACTTAG-AAATAAAATAGTTATATT
57419 TTTACTTAGAAATAAAATAGTTATAT
1 TTTACTTAGAAATAAAATAGTTATAT
57445 AAATTATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (27 bp):
TTTACTTAGAAATAAAATAGTTATATT
Found at i:57965 original size:177 final size:175
Alignment explanation
Indices: 57634--58228 Score: 496
Period size: 181 Copynumber: 3.3 Consensus size: 175
57624 AACTTATCCA
**
57634 AAATAAAATAATACTGCTTTATTAATATTTCAAAAATTAATAAACAAGAGATTTAAAAAATAAAT
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAAT----AAGAGATTTAAAAAATAAAT
** * * * * * * **
57699 C-AGTTTACTGAATCAATTCAAATAATCATGGCCATTTAAAGAACTATCTATTTTAAATCATTAT
62 CTA-TTTGTTG-ATCAATTCAAATAGTCATGACTATTTGAAGAATTATCTATTTCAAATTGTTAT
* * * * *
57763 TACCTTTTGTTTTGTCATCAAACAATTGTTTTTCAACAAATAAGATTTTTTT
125 AACCTTTTGTTTTATCATAAAACAATTGTTTTT-AACATATAAGATTTTTTC
* * *
57815 AAATAAAATAACACTAATTTATTAATATTTCAAGAATTAATAAGAGATTTAAAAAAGAAATCTAT
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTAT
* *
57880 TTGTTGATCCAATTCAAATAGTCATGATTATTTGAATAATTATCTATTTCAAAATTGTTATAACC
66 TTGTTGAT-CAATTCAAATAGTCATGACTATTTGAAGAATTATCTATTTC-AAATTGTTATAACC
* * *** * * * *
57945 -TTTGCTCTATCATAAAACAATTGTTTCTGGTCATACAAGCTTATTTG
129 TTTTGTTTTATCATAAAACAATTGTTT-TTAACATATAAGATTTTTTC
* * * * * * *
57992 GAATAAAGTAATAATAATTTAGTAATATTTTGAAAATGAATAACTATGAGATTTAAAAAATAAAT
1 AAATAAAATAATACTAATTTATTAATA-TTTCAAAA--ATTAA-TAAGAGATTTAAAAAATAAAT
* * * * * * * * *
58057 CTGTTTGTTAAATTAGTTCAAATAGTTAAGACTATATGAAGAATTATTTATTTCAACTTGTTATA
62 CTATTTGTT-GATCAATTCAAATAGTCATGACTATTTGAAGAATTATCTATTTCAAATTGTTATA
* * * * *
58122 ACCTTTTGTTTTATCATAAAACAA-T-TATTTAAGCTTATAAAAGCTTCTTC
126 ACCTTTTGTTTTATCATAAAACAATTGTTTTTAA-CATATAAGA-TTTTTTC
* * * *
58172 AGAATAGAATAAAATTAATTTATTAATATTTCAAAAATTTATAAGAGATTTAAAAAA
1 A-AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAA
58229 CAATTCTACT
Statistics
Matches: 326, Mismatches: 75, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
176 2 0.01
177 128 0.39
178 23 0.07
179 7 0.02
180 28 0.09
181 136 0.42
182 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.39
Consensus pattern (175 bp):
AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTAT
TTGTTGATCAATTCAAATAGTCATGACTATTTGAAGAATTATCTATTTCAAATTGTTATAACCTT
TTGTTTTATCATAAAACAATTGTTTTTAACATATAAGATTTTTTC
Found at i:58393 original size:9 final size:9
Alignment explanation
Indices: 58324--58396 Score: 52
Period size: 9 Copynumber: 8.7 Consensus size: 9
58314 TTAATGATAA
58324 ATAA-TTAT
1 ATAATTTAT
58332 ATAATTTA-
1 ATAATTTAT
58340 A-AA-TTAT
1 ATAATTTAT
*
58347 ATAATTAAT
1 ATAATTTAT
* *
58356 TTTA-TTACT
1 ATAATTTA-T
58365 ATAATTGTAT
1 ATAATT-TAT
58375 AT-ATTT-T
1 ATAATTTAT
58382 ATAATTTAT
1 ATAATTTAT
58391 ATAATT
1 ATAATT
58397 ATTCAAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 17
0.68 0.08 0.23
Matches are distributed among these distances:
6 3 0.06
7 6 0.12
8 14 0.28
9 21 0.42
10 4 0.08
11 2 0.04
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (9 bp):
ATAATTTAT
Found at i:59494 original size:180 final size:181
Alignment explanation
Indices: 59170--59556 Score: 467
Period size: 180 Copynumber: 2.1 Consensus size: 181
59160 TTTGTATTTG
* *
59170 TTCGGTAAATAGATTTATTTTTTAAAATCTCATTTTTATTAATTTTTTGAATGTTACTAAATTAG
1 TTCGGTAAATAGATTTATTTTTT-AAATCTCATTCTTATTAATTTTTTGAATATTACTAAATTAG
* * * * * * * * *
59235 TATTAATTTATTCTAAATAACCTTTTATGAACTAAAACAATTGTTTTATAACCAAATAAAATATT
65 TATTAATTTAATCCAAATAACCTTGTACGAACTAAAACAATTGTTTTACAACAAAAGAAAAGATC
* * * *
59300 AGAATGATTTGAAATAGATAATTATTC-TAATAGTCTTAACCATTTGAACTGA
130 AGAACGATTTGAAATAGATAATCATTCAT-ATAGTCTTAACCATTTCAACGGA
* * *
59352 TTCGGTAAACAAATTTATTTTTTAAATCTC-TTACTTATTAA-TTTTTGAAATATTATTAAATTA
1 TTCGGTAAATAGATTTATTTTTTAAATCTCATT-CTTATTAATTTTTTG-AATATTACTAAATTA
* * * *
59415 GTATTATTTTAATCCAAATAAGCTTGTACGAA-TGAAACAATTGTTTTACAACAAAAGAAAAGGT
64 GTATTAATTTAATCCAAATAACCTTGTACGAACTAAAACAATTGTTTTACAACAAAAGAAAAGAT
* * *
59479 CATAACGATTTGAAATAGATAATCATTCATATAGTCTTAACTATTTCAACGGG
129 CAGAACGATTTGAAATAGATAATCATTCATATAGTCTTAACCATTTCAACGGA
* *
59532 TTCGGCAATTAGATTTATTTTTTAA
1 TTCGGTAAATAGATTTATTTTTTAA
59557 TTTTCTTGGT
Statistics
Matches: 173, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
180 98 0.57
181 54 0.31
182 21 0.12
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.42
Consensus pattern (181 bp):
TTCGGTAAATAGATTTATTTTTTAAATCTCATTCTTATTAATTTTTTGAATATTACTAAATTAGT
ATTAATTTAATCCAAATAACCTTGTACGAACTAAAACAATTGTTTTACAACAAAAGAAAAGATCA
GAACGATTTGAAATAGATAATCATTCATATAGTCTTAACCATTTCAACGGA
Found at i:59736 original size:23 final size:23
Alignment explanation
Indices: 59699--59745 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
59689 AATTATTAAA
*
59699 TTAATTAAATAATAATTAAATAT
1 TTAATTAAATAATAAATAAATAT
* * *
59722 TTAATTAATTTATAAATAATTAT
1 TTAATTAAATAATAAATAAATAT
59745 T
1 T
59746 AAAATTACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TTAATTAAATAATAAATAAATAT
Found at i:59951 original size:20 final size:22
Alignment explanation
Indices: 59912--59960 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 22
59902 CTATTATGAA
*
59912 CTATATTAACTTATTAATTAAT
1 CTATATTAACTTAATAATTAAT
59934 CTATA-TAA-TTAATAATTAA-
1 CTATATTAACTTAATAATTAAT
*
59953 CAATATTA
1 CTATATTA
59961 TAATTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 4 0.17
20 12 0.50
21 3 0.12
22 5 0.21
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (22 bp):
CTATATTAACTTAATAATTAAT
Found at i:60218 original size:19 final size:18
Alignment explanation
Indices: 60194--60233 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
60184 ATTCAGTTAT
60194 TAATATTTATAA-ATTAATA
1 TAATATTTA-AATATTAA-A
60213 TAATATTTAAATATTAAA
1 TAATATTTAAATATTAAA
60231 TAA
1 TAA
60234 ACTATTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATATTTAAATATTAAA
Found at i:60229 original size:50 final size:45
Alignment explanation
Indices: 60167--60267 Score: 105
Period size: 50 Copynumber: 2.1 Consensus size: 45
60157 AGAATATTTA
* *
60167 ATTTAACAATTAAATTAATTCAGTTATTAATATTTATAAATTAATATAAT
1 ATTTAACAATTAAATAAACT-A-TTATTAATA--TATAAATTAA-ATAAT
*
60217 ATTTAA-ATATTAAATAAACTATTATTAATATATAAATTTAATAAT
1 ATTTAACA-ATTAAATAAACTATTATTAATATATAAATTAAATAAT
60262 AGTTTA
1 A-TTTA
60268 TTTAATTATA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
45 6 0.13
46 13 0.28
48 9 0.20
49 2 0.04
50 16 0.35
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.46
Consensus pattern (45 bp):
ATTTAACAATTAAATAAACTATTATTAATATATAAATTAAATAAT
Found at i:60387 original size:14 final size:15
Alignment explanation
Indices: 60368--60408 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
60358 ATTGTTTTTT
60368 ATATAAATAATA-TA
1 ATATAAATAATATTA
60382 ATATAAATAATATTA
1 ATATAAATAATATTA
* *
60397 AAATTAATAATA
1 ATATAAATAATA
60409 AATTATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAAATAATATTA
Found at i:60407 original size:15 final size:14
Alignment explanation
Indices: 60370--60408 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
60360 TGTTTTTTAT
*
60370 ATAAATAATATAAT
1 ATAAATAATATAAA
60384 ATAAATAATATTAAA
1 ATAAATAATA-TAAA
*
60399 ATTAATAATA
1 ATAAATAATA
60409 AATTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAAATAATATAAA
Found at i:62190 original size:20 final size:21
Alignment explanation
Indices: 62155--62231 Score: 65
Period size: 20 Copynumber: 3.8 Consensus size: 21
62145 TAAATTTTTT
*
62155 AATTATTTTAAATTAA-ATTAA
1 AATTA-TTTAATTTAATATTAA
*
62176 AATTATTTAATTTAATTTTAA
1 AATTATTTAATTTAATATTAA
* *
62197 TATTA-ATAATTTAATATTTAA
1 AATTATTTAATTTAATA-TTAA
62218 AA-TA-TTAA-TTAATA
1 AATTATTTAATTTAATA
62232 AATATAGAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 6 0.13
20 23 0.49
21 18 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTATTTAATTTAATATTAA
Found at i:62593 original size:20 final size:21
Alignment explanation
Indices: 62570--62615 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
62560 TTGGAATTGC
*
62570 TATAACCATTTTGTTTG-TCA
1 TATAACCATTTTATTTGTTCA
**
62590 TATAATGATTTTATTTGTTCA
1 TATAACCATTTTATTTGTTCA
62611 TATAA
1 TATAA
62616 GCTTACTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (21 bp):
TATAACCATTTTATTTGTTCA
Found at i:62613 original size:21 final size:20
Alignment explanation
Indices: 62577--62615 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
62567 TGCTATAACC
*
62577 ATTTTGTTTGTCATATAATG
1 ATTTTATTTGTCATATAATG
62597 ATTTTATTTGTTCATATAA
1 ATTTTATTTG-TCATATAA
62616 GCTTACTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.56
Consensus pattern (20 bp):
ATTTTATTTGTCATATAATG
Found at i:63170 original size:28 final size:30
Alignment explanation
Indices: 63094--63238 Score: 85
Period size: 31 Copynumber: 4.8 Consensus size: 30
63084 TCTTATTAAC
*
63094 ATAATTATT-TTATAATTTAATAATTTGAATA
1 ATAATAATTATTATAATTTAATAATTT--ATA
*
63125 ATAATATTATCTAATATAATTTAAT-ATTT-TA
1 ATAATA--AT-TATTATAATTTAATAATTTATA
* * *
63156 ATAATAATTATTATAA-ATAATAAATTATT
1 ATAATAATTATTATAATTTAATAATTTATA
63185 ATAAT--TTA-TA-AATTTATATATATTTA-A
1 ATAATAATTATTATAATTTA-ATA-ATTTATA
63212 TATATATAATTATATATAA-TTAATAAT
1 -ATA-ATAATTAT-TATAATTTAATAAT
63239 AATTCAAATA
Statistics
Matches: 89, Mismatches: 9, Indels: 32
0.68 0.07 0.25
Matches are distributed among these distances:
25 2 0.02
26 4 0.04
27 10 0.11
28 17 0.19
29 10 0.11
31 18 0.20
32 3 0.03
33 7 0.08
34 7 0.08
35 11 0.12
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (30 bp):
ATAATAATTATTATAATTTAATAATTTATA
Found at i:63183 original size:17 final size:17
Alignment explanation
Indices: 63155--63198 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
63145 TTAATATTTT
63155 AATAAT-AATTATTATA
1 AATAATAAATTATTATA
63171 AATAATAAATTATTATA
1 AATAATAAATTATTATA
* *
63188 ATTTATAAATT
1 AATAATAAATT
63199 TATATATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AATAATAAATTATTATA
Found at i:63213 original size:52 final size:53
Alignment explanation
Indices: 63157--63356 Score: 119
Period size: 52 Copynumber: 3.7 Consensus size: 53
63147 AATATTTTAA
63157 TAATAATTATTATAAATAATA-AATTATTATAATTTATAAATTTA-TATATATT
1 TAAT-ATTATTATAAATAATACAATTATTATAATTTATAAATTTAGTATATATT
* * * * * * *
63209 TAATA-TA-TATAATTATATATAATTAATAATAATTCA-AATATTTAGTAAAAATA
1 TAATATTATTATAAATA-ATACAATT-ATTATAATTTATAA-ATTTAGTATATATT
* * * * *
63262 TAATAATTATTGTATAAGTAATACAATAATT-TATTTTAAATAATTAAGTATATTATTT
1 TAAT-ATTA-T-TATAAATAATACAATTATTATAATTTATA-AATTTAGTATA-TA-TT
* * *
63320 TAATATTATAATAAAT-AT-TAATTATTATAATTAATAA
1 TAATATTATTATAAATAATACAATTATTATAATTTATAA
63357 TAATTAATTT
Statistics
Matches: 110, Mismatches: 23, Indels: 29
0.68 0.14 0.18
Matches are distributed among these distances:
49 7 0.06
50 5 0.05
51 7 0.06
52 18 0.16
53 16 0.15
54 9 0.08
55 12 0.11
56 12 0.11
57 12 0.11
58 12 0.11
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.47
Consensus pattern (53 bp):
TAATATTATTATAAATAATACAATTATTATAATTTATAAATTTAGTATATATT
Found at i:63237 original size:17 final size:16
Alignment explanation
Indices: 63157--63238 Score: 52
Period size: 17 Copynumber: 5.4 Consensus size: 16
63147 AATATTTTAA
*
63157 TAATAATTATTATAAA
1 TAATAATTATTATAAT
63173 TAATAAATTATTATAAT
1 TAAT-AATTATTATAAT
* *
63190 TTATAAAT-TTAT-A-
1 TAATAATTATTATAAT
* *
63203 T-ATATTTAATAT-A-
1 TAATAATTATTATAAT
63216 T-ATAATTATATATAAT
1 TAATAATTAT-TATAAT
63232 TAATAAT
1 TAATAAT
63239 AATTCAAATA
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
12 4 0.08
13 12 0.23
14 4 0.08
15 5 0.10
16 8 0.15
17 19 0.37
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATAATTATTATAAT
Found at i:63347 original size:19 final size:19
Alignment explanation
Indices: 63319--63362 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
63309 GTATATTATT
63319 TTAA-TATTATAATAAATA
1 TTAATTATTATAATAAATA
*
63337 TTAATTATTATAATTAATA
1 TTAATTATTATAATAAATA
*
63356 ATAATTA
1 TTAATTA
63363 ATTTATATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TTAATTATTATAATAAATA
Found at i:63354 original size:23 final size:23
Alignment explanation
Indices: 63159--63365 Score: 66
Period size: 23 Copynumber: 8.9 Consensus size: 23
63149 TATTTTAATA
*
63159 ATAATTATTATAAATAATAAATTATT
1 ATAATTA--ATAAAT-ATTAATTATT
*
63185 ATAATTTATAAAT-TT-A-TA-T
1 ATAATTAATAAATATTAATTATT
* *
63204 ATATTTAATATATA-TAATTATAT
1 ATAATTAATAAATATTAATTAT-T
*
63227 ATAATTAAT-AATAATTCAAATATT
1 ATAATTAATAAAT-ATT-AATTATT
*
63251 -T-AGTAA-AAATATAATAATTATTGT
1 ATAATTAATAAATAT--TAATTA-T-T
* *
63275 ATAAGTAATACAATAATTTATT-TT
1 ATAATTAATA-AAT-ATTAATTATT
63299 A-AA-TAATTAAGTATATT-ATT-TT
1 ATAATTAA-TAA--ATATTAATTATT
*
63321 AATATTATAATAAATATTAATTATT
1 -ATAAT-TAATAAATATTAATTATT
63346 ATAATTAAT-AATAATTAATT
1 ATAATTAATAAAT-ATTAATT
63366 TATATGTCCA
Statistics
Matches: 140, Mismatches: 13, Indels: 59
0.66 0.06 0.28
Matches are distributed among these distances:
19 12 0.09
20 3 0.02
21 5 0.04
22 26 0.19
23 37 0.26
24 21 0.15
25 12 0.09
26 14 0.10
27 5 0.04
28 3 0.02
29 2 0.01
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (23 bp):
ATAATTAATAAATATTAATTATT
Found at i:63456 original size:15 final size:15
Alignment explanation
Indices: 63438--63471 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
63428 TATTAAAATT
63438 TATTATAAAATAAAA
1 TATTATAAAATAAAA
* *
63453 TATTATAAGATAAGA
1 TATTATAAAATAAAA
63468 TATT
1 TATT
63472 TAATGTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (15 bp):
TATTATAAAATAAAA
Found at i:63505 original size:12 final size:12
Alignment explanation
Indices: 63484--63546 Score: 67
Period size: 12 Copynumber: 5.3 Consensus size: 12
63474 ATGTTATATT
63484 TAATAA-AATTA
1 TAATAATAATTA
*
63495 TTATAATAATTA
1 TAATAATAATTA
* *
63507 TTATAATAATAA
1 TAATAATAATTA
*
63519 TAACT-ATAAATA
1 TAA-TAATAATTA
63531 TAATAATAATTA
1 TAATAATAATTA
63543 TAAT
1 TAAT
63547 TGTTTTCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
11 6 0.14
12 36 0.84
13 1 0.02
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (12 bp):
TAATAATAATTA
Found at i:63509 original size:15 final size:15
Alignment explanation
Indices: 63480--63543 Score: 60
Period size: 15 Copynumber: 4.2 Consensus size: 15
63470 TTTAATGTTA
63480 TATT-TAATAA-AAT
1 TATTATAATAATAAT
*
63493 TATTATAATAATTAT
1 TATTATAATAATAAT
*
63508 TATAATAATAATAACT
1 TATTATAATAATAA-T
*
63524 ATAAATATAATAATAAT
1 -T-ATTATAATAATAAT
63541 TAT
1 TAT
63544 AATTGTTTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
13 4 0.10
14 6 0.15
15 15 0.38
16 2 0.05
17 2 0.05
18 11 0.28
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
TATTATAATAATAAT
Found at i:63518 original size:18 final size:17
Alignment explanation
Indices: 63496--63546 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 17
63486 ATAAAATTAT
63496 TATAATAATTATTATAA
1 TATAATAATTATTATAA
*
63513 TAATAATAACTA-TA-AA
1 T-ATAATAATTATTATAA
*
63529 TATAATAATAATTATAA
1 TATAATAATTATTATAA
63546 T
1 T
63547 TGTTTTCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 8 0.29
16 5 0.18
17 6 0.21
18 9 0.32
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TATAATAATTATTATAA
Found at i:64377 original size:144 final size:146
Alignment explanation
Indices: 64130--64412 Score: 367
Period size: 144 Copynumber: 2.0 Consensus size: 146
64120 AGTTATGACT
* * *
64130 ATTTGAACTTGTTCAGCAAACATATTTATTTTTTAAATTTTTTACTTATAAATTATCGAAATATT
1 ATTTGAACTTGTTCAACAAACAGATTTATTTTTTAAATCTTTTACTTATAAATTATCGAAATATT
* * *
64195 AATAAATTAATATTATTTTATTTCGATTAAGCTGGTATGAACA-AAAATAATTACTTTATGACAA
66 AATAAATTAATATTATTTTATTTCAAATAAGCTGGTATGAACAGAAAA-AATCACTTTATGACAA
64259 AACAAAAGGTCATCACA
130 AACAAAAGGTCATCACA
* * **
64276 ATTTGAACTTGTTCAATAAACAGATTTA-TTTTTAAATCTTTTACTTATTAATTATCTTAAT-TT
1 ATTTGAACTTGTTCAACAAACAGATTTATTTTTTAAATCTTTTACTTATAAATTATCGAAATATT
** * * * *
64339 AATAAATTTGTATTATTTTA-TTCAAAATAAGCTTGTATGAATAGAAAAAATCATTTTATGACGA
66 AATAAATTAATATTATTTTATTTC-AAATAAGCTGGTATGAACAGAAAAAATCACTTTATGACAA
*
64403 AGCAAAAGGT
130 AACAAAAGGT
64413 TATAGTGATT
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
143 3 0.03
144 57 0.48
145 33 0.28
146 25 0.21
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (146 bp):
ATTTGAACTTGTTCAACAAACAGATTTATTTTTTAAATCTTTTACTTATAAATTATCGAAATATT
AATAAATTAATATTATTTTATTTCAAATAAGCTGGTATGAACAGAAAAAATCACTTTATGACAAA
ACAAAAGGTCATCACA
Found at i:64710 original size:23 final size:24
Alignment explanation
Indices: 64666--64722 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
64656 CAAATAAATT
64666 TTAA-AATATT-ATAATTAATATAA
1 TTAATAATATTAATAATTAATAT-A
*
64689 TT-ATAATATTAATAA-TACTATA
1 TTAATAATATTAATAATTAATATA
64711 TTAATAATATTA
1 TTAATAATATTA
64723 TTAACTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 4 0.13
23 22 0.73
24 4 0.13
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
TTAATAATATTAATAATTAATATA
Found at i:64831 original size:14 final size:14
Alignment explanation
Indices: 64787--64838 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 14
64777 TATATAATTT
*
64787 ATTTTATAAATAATA
1 ATTTAATAAAT-ATA
64802 ATATTATATAAAATATA
1 AT-TTA-AT-AAATATA
64819 ATTTAATAAATATA
1 ATTTAATAAATATA
*
64833 AATTAA
1 ATTTAA
64839 ATAATTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
14 12 0.38
15 4 0.12
16 5 0.16
17 7 0.22
18 4 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
ATTTAATAAATATA
Found at i:65679 original size:10 final size:10
Alignment explanation
Indices: 65664--65720 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
65654 TTAATATTTT
65664 ATTAATTATA
1 ATTAATTATA
65674 ATTAATTATA
1 ATTAATTATA
65684 ATT-ATATATA
1 ATTAAT-TATA
*
65694 ATTGATTA-A
1 ATTAATTATA
*
65703 A-TAAATATA
1 ATTAATTATA
*
65712 ATTTATTAT
1 ATTAATTAT
65721 TTTACTAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 4 0.10
9 6 0.15
10 27 0.69
11 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (10 bp):
ATTAATTATA
Found at i:65710 original size:18 final size:20
Alignment explanation
Indices: 65664--65720 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
65654 TTAATATTTT
*
65664 ATTAATTATAATTAATTATA
1 ATTAAATATAATTAATTATA
* *
65684 ATTATATATAATTGATTA-A
1 ATTAAATATAATTAATTATA
*
65703 A-TAAATATAATTTATTAT
1 ATTAAATATAATTAATTAT
65721 TTTACTAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 14 0.45
19 2 0.06
20 15 0.48
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
ATTAAATATAATTAATTATA
Found at i:66215 original size:21 final size:19
Alignment explanation
Indices: 66180--66219 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
66170 TATATAGAAT
66180 ATAAGTTAATATAATTTAA
1 ATAAGTTAATATAATTTAA
66199 ATAAGATTAATACTAATTTAA
1 ATAAG-TTAATA-TAATTTAA
66220 TTAACATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 6 0.32
21 8 0.42
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.40
Consensus pattern (19 bp):
ATAAGTTAATATAATTTAA
Found at i:66857 original size:17 final size:20
Alignment explanation
Indices: 66817--66857 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 20
66807 TTGTTATTAG
66817 AATTAATGAATTAAATAGTT
1 AATTAATGAATTAAATAGTT
66837 -ATTAAT-AA-TAAATA-TT
1 AATTAATGAATTAAATAGTT
66853 AATTA
1 AATTA
66858 TAAAATTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
16 2 0.10
17 10 0.50
18 2 0.10
19 6 0.30
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (20 bp):
AATTAATGAATTAAATAGTT
Found at i:67114 original size:26 final size:24
Alignment explanation
Indices: 67084--67138 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 24
67074 ATATTATTGT
67084 AATTAGCTTA-TAATAAATTAATATA
1 AATTA-CTTATTAAT-AATTAATATA
*
67109 CAATTATTTATTTAATAATTAATATA
1 -AATTACTTA-TTAATAATTAATATA
67135 AATT
1 AATT
67139 TATATTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
25 7 0.27
26 15 0.58
27 4 0.15
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
AATTACTTATTAATAATTAATATA
Found at i:67146 original size:27 final size:27
Alignment explanation
Indices: 67094--67155 Score: 76
Period size: 26 Copynumber: 2.3 Consensus size: 27
67084 AATTAGCTTA
67094 TAATAAATTAATATACAATTATTTAT-T
1 TAAT-AATTAATATACAATTATTTATAT
67121 TAATAATTAATATA-AATTTATATTATAT
1 TAATAATTAATATACAA-TTAT-TTATAT
67149 T-ATAATT
1 TAATAATT
67156 CTTAGTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
25 2 0.06
26 14 0.44
27 14 0.44
28 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (27 bp):
TAATAATTAATATACAATTATTTATAT
Found at i:67644 original size:27 final size:25
Alignment explanation
Indices: 67593--67669 Score: 72
Period size: 27 Copynumber: 3.1 Consensus size: 25
67583 TCATAGCTAA
67593 TAAT-ATTATTAT-TTATAATAATAAT
1 TAATAATTATTATATTATAAT--TAAT
*
67618 TATGTAATTATTATAATTATAATTAAT
1 TA-ATAATTATTAT-ATTATAATTAAT
*
67645 TAATAA-TATTATATT-TAAATAAT
1 TAATAATTATTATATTATAATTAAT
67668 TA
1 TA
67670 GGGATTATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
23 9 0.20
24 3 0.07
25 8 0.18
26 4 0.09
27 14 0.31
29 7 0.16
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (25 bp):
TAATAATTATTATATTATAATTAAT
Found at i:67648 original size:23 final size:23
Alignment explanation
Indices: 67600--67669 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 23
67590 TAATAATATT
*
67600 ATTATTTATAATAATAATT-ATGTA
1 ATTA-TTATAATTATAATTAAT-TA
67624 ATTATTATAATTATAATTAATTA
1 ATTATTATAATTATAATTAATTA
*
67647 ATAATATTAT-ATT-TAAATAATTA
1 AT--TATTATAATTATAATTAATTA
67670 GGGATTATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
23 26 0.63
24 9 0.22
25 6 0.15
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (23 bp):
ATTATTATAATTATAATTAATTA
Found at i:67650 original size:17 final size:17
Alignment explanation
Indices: 67611--67651 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
67601 TTATTTATAA
67611 TAATAATTATGTAATTAT
1 TAATAATTA-GTAATTAT
67629 T-ATAATTA-TAATTAAT
1 TAATAATTAGTAATT-AT
67645 TAATAAT
1 TAATAAT
67652 ATTATATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 5 0.24
16 3 0.14
17 12 0.57
18 1 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
TAATAATTAGTAATTAT
Found at i:67869 original size:17 final size:17
Alignment explanation
Indices: 67827--67877 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
67817 TTTAAATATT
**
67827 TAATTAAATTATTATAATT
1 TAATT-AATTATT-TAAAC
67846 TAA-TAATTATTTAAAC
1 TAATTAATTATTTAAAC
*
67862 TAATTAATTTTTTAAA
1 TAATTAATTATTTAAA
67878 TCTTGAACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
16 6 0.21
17 18 0.64
18 1 0.04
19 3 0.11
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATTAATTATTTAAAC
Found at i:68232 original size:180 final size:179
Alignment explanation
Indices: 67884--68326 Score: 482
Period size: 180 Copynumber: 2.5 Consensus size: 179
67874 TAAATCTTGA
* * ** * * *
67884 ACTTATTAATTTTTAGAATGTTAATATATTAGTATTATTTTATCCCAAATAAACTTGTTTGAATA
1 ACTTATTAATTTTTGGAATATTAATA-ATTAGTATTATTTTATTTCAAATAAGCTTGCTTGAACA
* *
67949 GAAACAATTGTTTTATAATAAAACAAAAGATCATAATGATTTGAAATAAATAATTGTTCAAACAA
65 GAAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAAATAATTGTTCAAACAA
* * *
68014 TCATAACTATTTGAACTCACTCGGTAAATAAATTTATTTT-TAAAATTTTTT
130 TCATAACTATTTGAACTCACTCAGAAAATAAATTTATTTTCTAAAA--TTAT
* * *
68065 ACTTATT-AGTTTTGGAATATTAACTAATTAGAATTATTTTATTTCAAATAAGCTTGGTTGAACA
1 ACTTATTAATTTTTGGAATATTAA-TAATTAGTATTATTTTATTTCAAATAAGCTTGCTTGAACA
* * * * * * *
68129 GAAACAATTGGTTTATGACAAAACATATGGTCATAATGATTTGAAATAGATAATTTTTCAAACAG
65 GAAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAAATAATTGTTCAAACAA
* *** **
68194 TCATAATTATTTGAA-TGTGTTCAGAAAATAGCTTTATTTTCTAAAATTAT
130 TCATAACTATTTGAACT-CACTCAGAAAATAAATTTATTTTCTAAAATTAT
* * * *
68244 ACTTATTAATTTTTGAAATATTAATAAATTTA-TATTATTTTA-TTCAAAATACGCTTACATGAA
1 ACTTATTAATTTTTGGAATATTAAT-AA-TTAGTATTATTTTATTTC-AAATAAGCTTGCTTGAA
*
68307 CAGAACCAATTGTTTTATGA
63 CAGAAACAATTGTTTTATGA
68327 TAATTGATAT
Statistics
Matches: 219, Mismatches: 36, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
179 15 0.07
180 187 0.85
181 17 0.08
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (179 bp):
ACTTATTAATTTTTGGAATATTAATAATTAGTATTATTTTATTTCAAATAAGCTTGCTTGAACAG
AAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAAATAATTGTTCAAACAAT
CATAACTATTTGAACTCACTCAGAAAATAAATTTATTTTCTAAAATTAT
Found at i:68496 original size:21 final size:20
Alignment explanation
Indices: 68438--68501 Score: 57
Period size: 16 Copynumber: 3.4 Consensus size: 20
68428 GATATTAATA
68438 TTATTAAT-TAATAATAAA-
1 TTATTAATATAATAATAAAT
*
68456 --ATTAGT-TAATAATAAAT
1 TTATTAATATAATAATAAAT
* *
68473 TTATATAATATAATAATCATT
1 TTAT-TAATATAATAATAAAT
68494 TTATTAAT
1 TTATTAAT
68502 TAAAATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
16 15 0.41
19 2 0.05
20 7 0.19
21 13 0.35
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (20 bp):
TTATTAATATAATAATAAAT
Found at i:68516 original size:32 final size:31
Alignment explanation
Indices: 68478--68541 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 31
68468 TAAATTTATA
*
68478 TAATATA-ATAATCATTTTATTAATTAAAATTT
1 TAATATATATAATAATTTTATT-A-TAAAATTT
*
68510 TAATATATTATTATAATTTTATTATAAAATTT
1 TAATATA-TATAATAATTTTATTATAAAATTT
68542 GTTTGTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 15 0.54
33 1 0.04
34 12 0.43
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (31 bp):
TAATATATATAATAATTTTATTATAAAATTT
Found at i:68527 original size:19 final size:20
Alignment explanation
Indices: 68495--68535 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
68485 ATAATCATTT
68495 TATTAATTAAAATTTTAATA
1 TATTAATTAAAATTTTAATA
* *
68515 TATT-ATTATAATTTTATTA
1 TATTAATTAAAATTTTAATA
68534 TA
1 TA
68536 AAATTTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTAATTAAAATTTTAATA
Found at i:68679 original size:11 final size:13
Alignment explanation
Indices: 68643--68680 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
68633 TAAGCTTATG
68643 TTAATAAATATTA
1 TTAATAAATATTA
68656 TTAATAAACTATTA
1 TTAATAAA-TATTA
68670 TT-AT-AATATTA
1 TTAATAAATATTA
68681 ATATTTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.21
12 2 0.08
13 10 0.42
14 7 0.29
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
TTAATAAATATTA
Found at i:68708 original size:12 final size:11
Alignment explanation
Indices: 68687--68719 Score: 57
Period size: 12 Copynumber: 2.9 Consensus size: 11
68677 ATTAATATTT
68687 TTAATAATTAA
1 TTAATAATTAA
68698 TTAATAGATTAA
1 TTAATA-ATTAA
68710 TTAATAATTA
1 TTAATAATTA
68720 TATATTAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (11 bp):
TTAATAATTAA
Found at i:68948 original size:14 final size:14
Alignment explanation
Indices: 68926--68955 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
68916 TAGATTAGTT
*
68926 TATATAATAATTAA
1 TATAAAATAATTAA
68940 TATAAAATAATTAA
1 TATAAAATAATTAA
68954 TA
1 TA
68956 ATATCCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
TATAAAATAATTAA
Found at i:68979 original size:25 final size:23
Alignment explanation
Indices: 68925--68996 Score: 60
Period size: 25 Copynumber: 3.1 Consensus size: 23
68915 ATAGATTAGT
*
68925 TTATATAATAAT-T-AATATAAA
1 TTATATAATAATATCAATATATA
*
68946 ATA-ATTAATAATATCCAATTATATA
1 TTATA-TAATAATAT-CAA-TATATA
* *
68971 TTATATAATATTATTAATATATA
1 TTATATAATAATATCAATATATA
68994 TTA
1 TTA
68997 ATTAAATTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 1 0.03
21 9 0.22
22 1 0.03
23 9 0.22
24 4 0.10
25 15 0.38
26 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (23 bp):
TTATATAATAATATCAATATATA
Found at i:69150 original size:14 final size:14
Alignment explanation
Indices: 69126--69167 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
69116 TGGTATTATT
69126 ATAACTTATTAACT-A
1 ATAA-TTATTAA-TAA
69141 ATAATTATTAATAA
1 ATAATTATTAATAA
*
69155 ATAATTGTTAATA
1 ATAATTATTAATA
69168 GATTAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 1 0.04
14 20 0.80
15 4 0.16
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (14 bp):
ATAATTATTAATAA
Found at i:69398 original size:15 final size:15
Alignment explanation
Indices: 69378--69443 Score: 73
Period size: 15 Copynumber: 4.3 Consensus size: 15
69368 CTTTATTAAC
69378 AATATATAAATAATT
1 AATATATAAATAATT
*
69393 AATATAGTAAATATTAT
1 AATATA-TAAATAAT-T
*
69410 AATAT-TATATAATT
1 AATATATAAATAATT
69424 -ATAATATAAATAATT
1 AAT-ATATAAATAATT
69439 AATAT
1 AATAT
69444 TATTATTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
13 2 0.05
14 3 0.07
15 22 0.52
16 9 0.21
17 6 0.14
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
AATATATAAATAATT
Found at i:69431 original size:21 final size:22
Alignment explanation
Indices: 69407--69468 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 22
69397 TAGTAAATAT
69407 TATAATATTATATAATTA-TAA
1 TATAATATTATATAATTATTAA
*
69428 TATAAATAATTAATATTATTATTAA
1 TAT-AAT-ATT-ATATAATTATTAA
*
69453 TATAATTGTTATATAA
1 TATAA-TATTATATAA
69469 ATAAATGACT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
21 3 0.09
22 3 0.09
23 8 0.24
24 12 0.36
25 7 0.21
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
TATAATATTATATAATTATTAA
Found at i:69453 original size:25 final size:24
Alignment explanation
Indices: 69313--69457 Score: 86
Period size: 23 Copynumber: 5.9 Consensus size: 24
69303 AACAAATATG
*
69313 ATTAATATTATTAT-ATAAAAATA
1 ATTAATATTATTATAATATAAATA
* * * *
69336 AATATTATTAGTATAAATTTAACATA
1 ATTAATATTATTAT-AATATAA-ATA
*
69362 A-TAATACTTTATTAACAATATATAAATA
1 ATTAATA--TTATT-A-TA-ATATAAATA
*
69390 ATTAATA-TAGTA-AATATTATAAT-
1 ATTAATATTATTATAATA-TA-AATA
*
69413 ATT-ATATAATTATAATATAAATA
1 ATTAATATTATTATAATATAAATA
69436 ATTAATATTATTATTAATATAA
1 ATTAATATTATTA-TAATATAA
69458 TTGTTATATA
Statistics
Matches: 93, Mismatches: 13, Indels: 30
0.68 0.10 0.22
Matches are distributed among these distances:
22 9 0.10
23 25 0.27
24 15 0.16
25 17 0.18
26 7 0.08
27 4 0.04
28 6 0.06
29 10 0.11
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.43
Consensus pattern (24 bp):
ATTAATATTATTATAATATAAATA
Found at i:69467 original size:36 final size:36
Alignment explanation
Indices: 69402--69472 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 36
69392 TAATATAGTA
69402 AATATTATAATATTATATAATTATAATATAAATAATT
1 AATATTAT-ATATTATATAATTATAATATAAATAATT
* *
69439 AATATTAT-TATTAATATAATTGTTATATAAATAA
1 AATATTATATATT-ATATAATTATAATATAAATAA
69473 ATGACTATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
35 4 0.13
36 19 0.61
37 8 0.26
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (36 bp):
AATATTATATATTATATAATTATAATATAAATAATT
Found at i:69598 original size:27 final size:26
Alignment explanation
Indices: 69543--69612 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
69533 ATTTGACATG
*
69543 TATATTATACTAT-ATTTAAATATAA
1 TATATTATACTATAATTAAAATATAA
*
69568 TATATTATAATTATAATTAAAATA-ATA
1 TATATTAT-ACTATAATTAAAATATA-A
69595 TATATTATTACTATAATT
1 TATATTA-TACTATAATT
69613 TTTTTAATTC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
25 8 0.21
26 5 0.13
27 24 0.63
28 1 0.03
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (26 bp):
TATATTATACTATAATTAAAATATAA
Found at i:69812 original size:18 final size:16
Alignment explanation
Indices: 69755--69832 Score: 61
Period size: 18 Copynumber: 4.6 Consensus size: 16
69745 ATTAATTATC
69755 TATTAAAT-ATAATTT
1 TATTAAATAATAATTT
*
69770 TA-TAAATTAATAATAT
1 TATTAAA-TAATAATTT
*
69786 TATACAAATAACTAATTT
1 TAT-TAAATAA-TAATTT
*
69804 ATATTAAATTATTATATTT
1 -TATTAAA-TAATA-ATTT
69823 TATTAAATAA
1 TATTAAATAA
69833 ATTATTATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 4 0.08
15 3 0.06
16 8 0.16
17 5 0.10
18 20 0.41
19 9 0.18
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
TATTAAATAATAATTT
Found at i:69831 original size:36 final size:32
Alignment explanation
Indices: 69729--69832 Score: 79
Period size: 36 Copynumber: 3.1 Consensus size: 32
69719 TATAGTATAT
*
69729 TAATAATTGTTAGATAATTAAT--TATCTATTAAA
1 TAATAATT-TTATA-AATTAATAATAT-TATTAAA
*
69762 T-ATAATTTTATAAATTAATAATATTATACAAA
1 TAATAATTTTATAAATTAATAATATTAT-TAAA
* *
69794 TAACTAATTTATATTAAATTATTATATTTTATTAAA
1 TAA-TAATTT-TA-TAAATTAATA-ATATTATTAAA
69830 TAA
1 TAA
69833 ATTATTATTT
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
30 7 0.12
31 7 0.12
32 13 0.22
33 2 0.03
34 6 0.10
35 2 0.03
36 15 0.26
37 6 0.10
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (32 bp):
TAATAATTTTATAAATTAATAATATTATTAAA
Found at i:69836 original size:19 final size:20
Alignment explanation
Indices: 69800--69843 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 20
69790 CAAATAACTA
*
69800 ATTTATATTAAATTATTA-T
1 ATTTATATTAAATAATTATT
69819 ATTT-TATTAAATAAATTATT
1 ATTTATATTAAAT-AATTATT
69839 ATTTA
1 ATTTA
69844 ATCTTAGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTATATTAAATAATTATT
Found at i:71015 original size:10 final size:10
Alignment explanation
Indices: 70943--71023 Score: 53
Period size: 9 Copynumber: 8.1 Consensus size: 10
70933 TCTTCTAATA
*
70943 AATTAGTTTTT
1 AATTA-TTTAT
*
70954 AATTATATAT
1 AATTATTTAT
70964 -ATTATTTA-
1 AATTATTTAT
*
70972 AATTA-TAAT
1 AATTATTTAT
*
70981 AATT-TATAT
1 AATTATTTAT
70990 AATTATAATATAT
1 AATTAT--T-TAT
*
71003 AATTGTTTAT
1 AATTATTTAT
71013 AATTATTTAT
1 AATTATTTAT
71023 A
1 A
71024 TATGATTAGA
Statistics
Matches: 54, Mismatches: 9, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
8 2 0.04
9 21 0.39
10 17 0.31
11 6 0.11
13 8 0.15
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (10 bp):
AATTATTTAT
Found at i:71058 original size:18 final size:17
Alignment explanation
Indices: 71035--71077 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
71025 ATGATTAGAA
71035 ATATTATTAATAGTCATT
1 ATATTATTAATA-TCATT
* *
71053 ATATTAATAATATTATT
1 ATATTATTAATATCATT
71070 ATAATTAT
1 AT-ATTAT
71078 AAGTTTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
ATATTATTAATATCATT
Found at i:71270 original size:15 final size:17
Alignment explanation
Indices: 71250--71292 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 17
71240 TTAAATAACA
71250 ATTATTATA-TAAATT-
1 ATTATTATATTAAATTC
71265 ATTATTATCATTAAATTC
1 ATTATTAT-ATTAAATTC
71283 ATTAATTATA
1 ATT-ATTATA
71293 ATTATATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.33
16 1 0.04
17 6 0.25
18 4 0.17
19 5 0.21
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTATTATATTAAATTC
Found at i:71640 original size:13 final size:13
Alignment explanation
Indices: 71622--71646 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71612 TTATATATTT
71622 AATTATATAATAA
1 AATTATATAATAA
71635 AATTATATAATA
1 AATTATATAATA
71647 TTAATTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AATTATATAATAA
Found at i:72015 original size:24 final size:23
Alignment explanation
Indices: 71974--72029 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
71964 TAAATATAAT
* *
71974 TATATATT-AATAATTATTATAAA
1 TATATATTAAATAAATATT-CAAA
71997 T-TATATTAAATTAAATATTCAAA
1 TATATATTAAA-TAAATATTCAAA
72020 TATATATTAA
1 TATATATTAA
72030 CTATAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 6 0.21
23 7 0.25
24 15 0.54
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
TATATATTAAATAAATATTCAAA
Found at i:72251 original size:26 final size:25
Alignment explanation
Indices: 72209--72279 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 25
72199 ATAATATATT
72209 ATAAAA-TATATT-TATAT-TAA-AA
1 ATAAAACTAT-TTATATATATAATAA
*
72231 ATTAAACTATTTTATATATATAATAA
1 ATAAAACTA-TTTATATATATAATAA
72257 ATAAAACTATTTATATATTATAA
1 ATAAAACTATTTATATA-TATAA
72280 GATTATTAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
22 5 0.12
23 4 0.10
24 6 0.15
25 11 0.27
26 15 0.37
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (25 bp):
ATAAAACTATTTATATATATAATAA
Found at i:72303 original size:11 final size:11
Alignment explanation
Indices: 72282--72323 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
72272 TATTATAAGA
72282 TTATTAA-TAT
1 TTATTAATTAT
72292 TTATTAATTAT
1 TTATTAATTAT
* *
72303 TTAATATTTAT
1 TTATTAATTAT
72314 TTAATTAATT
1 TT-ATTAATT
72324 TAATTGATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 7 0.27
11 14 0.54
12 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTATTAATTAT
Found at i:72306 original size:18 final size:19
Alignment explanation
Indices: 72281--72327 Score: 71
Period size: 18 Copynumber: 2.5 Consensus size: 19
72271 ATATTATAAG
72281 ATTA-TTAATATTTA-TTA
1 ATTATTTAATATTTATTTA
72298 ATTATTTAATATTTATTTA
1 ATTATTTAATATTTATTTA
72317 ATTAATTTAAT
1 ATT-ATTTAAT
72328 TGATATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.15
18 10 0.37
19 6 0.22
20 7 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTATTTAATATTTATTTA
Found at i:72709 original size:11 final size:11
Alignment explanation
Indices: 72693--72722 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
72683 CTATTTACAC
72693 AATTATATCAT
1 AATTATATCAT
*
72704 AATTATATCGT
1 AATTATATCAT
72715 AATTATAT
1 AATTATAT
72723 TAGATACCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (11 bp):
AATTATATCAT
Found at i:72857 original size:13 final size:13
Alignment explanation
Indices: 72839--72864 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72829 ATAATATTTA
72839 AATTTTAAATATT
1 AATTTTAAATATT
72852 AATTTTAAATATT
1 AATTTTAAATATT
72865 CAAACTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AATTTTAAATATT
Found at i:72920 original size:42 final size:41
Alignment explanation
Indices: 72831--72927 Score: 99
Period size: 42 Copynumber: 2.3 Consensus size: 41
72821 TAATATATAT
* *
72831 AATATTTAAATTTTAAATATTAATTTTAAATATTCAAACTA
1 AATATTTAAATTTTAAATATTAATTTTAAATATTAAAAATA
* *
72872 ATATATTT-TATTTTAATATATTAATTTGTTTAA-ATTAAAAATA
1 A-ATATTTAAATTTTAA-ATATTAA-TT-TTAAATATTAAAAATA
*
72915 AATATTAAAATTT
1 AATATTTAAATTT
72928 ATTTTAAGTA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
41 8 0.18
42 18 0.40
43 15 0.33
44 4 0.09
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (41 bp):
AATATTTAAATTTTAAATATTAATTTTAAATATTAAAAATA
Found at i:73057 original size:28 final size:30
Alignment explanation
Indices: 73026--73107 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 30
73016 TTAATATTAC
73026 TTAATTAT-ATACTATTAAATAATTAAT-A
1 TTAATTATAATACTATTAAATAATTAATAA
* * * *
73054 TTAA-TATAATATTACTAATTTATTAATAA
1 TTAATTATAATACTATTAAATAATTAATAA
73083 TTAATTAATAATACTTATTTAAATA
1 TTAATT-ATAATAC-TA-TTAAATA
73108 TAAGTTATAT
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
27 3 0.08
28 19 0.47
29 5 0.12
30 1 0.03
31 6 0.15
32 2 0.05
33 4 0.10
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.48
Consensus pattern (30 bp):
TTAATTATAATACTATTAAATAATTAATAA
Found at i:73110 original size:28 final size:28
Alignment explanation
Indices: 73015--73104 Score: 69
Period size: 28 Copynumber: 3.2 Consensus size: 28
73005 ATATAATAAT
* *
73015 TTTAATATTACTTAATT-AT-ATACT-A
1 TTTAATAATAATTAATTAATAATACTAA
* *
73040 TTAAATAATTAATATTAATATAATATTACTAA
1 TTTAATAA-T-A-ATTAAT-TAATAATACTAA
* *
73072 TTTATTAATAATTAATTAATAATACTTA
1 TTTAATAATAATTAATTAATAATACTAA
73100 TTTAA
1 TTTAA
73105 ATATAAGTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
25 6 0.12
26 1 0.02
27 1 0.02
28 19 0.39
29 7 0.14
30 3 0.06
31 5 0.10
32 7 0.14
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (28 bp):
TTTAATAATAATTAATTAATAATACTAA
Found at i:73185 original size:11 final size:11
Alignment explanation
Indices: 73165--73193 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
73155 TAAATATTTA
73165 TAAT-AATTAT
1 TAATAAATTAT
73175 TAATAAATTAT
1 TAATAAATTAT
73186 TAATAAAT
1 TAATAAAT
73194 AATTTATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATAAATTAT
Found at i:73738 original size:16 final size:15
Alignment explanation
Indices: 73702--73743 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
73692 TAATAATTAT
73702 TATAATGAATAACATGA
1 TATAAT-AAT-ACATGA
73719 -ATAATAATACATTGA
1 TATAATAATACA-TGA
73734 TATAATAATA
1 TATAATAATA
73744 TTATTTTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 3 0.13
15 6 0.26
16 14 0.61
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (15 bp):
TATAATAATACATGA
Found at i:74447 original size:21 final size:22
Alignment explanation
Indices: 74423--74468 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
74413 TTCTTAGTTA
*
74423 TAAATCTAATTGTATTT-ATTT
1 TAAATATAATTGTATTTAATTT
* *
74444 TAAATATTATTTTATTTAATTT
1 TAAATATAATTGTATTTAATTT
74466 TAA
1 TAA
74469 TAATCAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (22 bp):
TAAATATAATTGTATTTAATTT
Found at i:74828 original size:33 final size:31
Alignment explanation
Indices: 74790--74853 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 31
74780 AGTTATAATC
*
74790 AAATTA-TATATAATTAATATTAAAAATTAATTA
1 AAATTATTA-ATAAGTAATATT--AAATTAATTA
*
74823 AAATTATTAATAAGTAATGTTAAATTAATTA
1 AAATTATTAATAAGTAATATTAAATTAATTA
74854 CGAAATAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 10 0.36
33 16 0.57
34 2 0.07
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (31 bp):
AAATTATTAATAAGTAATATTAAATTAATTA
Found at i:75407 original size:181 final size:177
Alignment explanation
Indices: 75043--76177 Score: 657
Period size: 181 Copynumber: 6.4 Consensus size: 177
75033 AATAAGATAT
* * * * * * *
75043 TATTTGAAATCATTATCACTTTTTTGTTGGTCATATAACAATTGTTTTT-TATCATACATGATTA
1 TATTTCAAATCATTATAAC-CTTTTGTTTGTCATAAAACAATT-TTTTTGT-TCATACAAGCTTA
* * * * *
75107 TTCGAAAT-AA-AATAATAATTTATTAATCTTTCAAAAA-T--TAA-TAAGAGATTTAAAAAATG
63 TTCAAAATAAATAATACTAATCTATTAATATTTCAAAAATTAATAACTAAGAGATTAAAAAAAT-
* * * * *
75166 AA-TATGTTTACCGAATCAGTTCAAATAGTTATAACTATTTGAACAATTCTA
127 AATTCTTTTTACCGAACCAATTCAAATAGTTA-AACTATTTGAACAATTATA
* *
75217 TACTTCAAATCATTATAACCTTTTGTTATATCATAAAACAATTATTTTTGTTCATACAAGCTTAT
1 TATTTCAAATCATTATAACCTTTTGTT-TGTCATAAAACAATT-TTTTTGTTCATACAAGCTTAT
* * * *
75282 TCAAAATGAAACAATACTAATCTAATAATATTCCAAAAATTAATAACTAAGGGATTAAAAAAATA
64 TCAAAAT-AAATAATACTAATCTATTAATATTTCAAAAATTAATAACTAAGAGATTAAAAAAAT-
** * * * *
75347 AATT-TTTTTGTCGAACCAATTCAAATAGTTAAGACTGTATGAATAATTATC
127 AATTCTTTTTACCGAACCAATTCAAATAGTTAA-ACTATTTGAACAATTATA
* * ** *
75398 TATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATTTTCTCAGTTCATACTAGCTTAT
1 TATTTCAAATCATTATAACCTTTTGT-TTGTCATAAAACAATTTT-TTTGTTCATACAAGCTTAT
* * * * *
75463 TCAAAGTAAAATAA-AATGAATTTATTAATATTTCAAAAA-TACATAAGTAAGAGATTTAAAAAA
64 TCAAAAT-AAATAATACT-AATCTATTAATATTTCAAAAATTA-ATAACTAAGAGATTAAAAAAA
* * * * * * *
75526 TAATTCTTTTTACCTAACCAGTTAAAAAAATTATACTATTTGAACCATTATA
126 TAATTCTTTTTACCGAACCAATTCAAATAGTTAAACTATTTGAACAATTATA
* * * * * *
75578 TATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAAATGTTTTTGTTCATATAAGTTTAT
1 TATTTCAAATCATTATAACCTTTTG-TTTGTCATAAAAC-AATTTTTTTGTTCATACAAGCTTAT
* * * *
75643 TC-AAATAAAGTAATACTAATCTATTAATATTTCAAAAA-T--TAA-TAAGTGATTTAGACAATA
64 TCAAAATAAA-TAATACTAATCTATTAATATTTCAAAAATTAATAACTAAGAGATTAAAAAAATA
* * * * * * * * * *
75703 AATCTATGTATCAAACTAGTTCAAATAGTTATGACTATTTGAGCAATTATT
128 ATTCTTTTTACCGAACCAATTCAAATAGTTA-AACTATTTGAACAATTATA
* * ** * * * *
75754 TATTTCAAATCATTATGACTTTTTGTTTTGTTGTAAAACAATTGTTTCTATTCTTGCAAGCTTAT
1 TATTTCAAATCATTATAACCTTTTG-TTTGTCATAAAACAATT-TTTTTGTTCATACAAGCTTA-
** * ** * * * * * * **
75819 TTGCATTA-AAATAATACTAATTTATTAATATTTGGACAATTAGTCAGTAAAAAATTTTAAAAA-
63 TT-CAAAATAAATAATACTAATCTATTAATATTTCAAAAATTAATAACTAAGAGATTAAAAAAAT
* * * * * * * * * * *
75882 CA---TGTTTACCGCACTAGA-TCAAACAATCATGACAATTTGAATAATTATC
127 AATTCTTTTTACCGAACCA-ATTCAAATAGTTA-AACTATTTGAACAATTATA
* * * ** * *
75931 TATTTCAAATCATTATGACCTTTTGATTTGTCATAAAAGAGTTGTTTCAGTCCATATAAGCTTAT
1 TATTTCAAATCATTATAACCTTTTG-TTTGTCATAAAACAATT-TTTTTGTTCATACAAGCTTAT
* * * *
75996 TCAAAATAAAATAATACTAATTTATTAATAATCCAAAAATTAATAA-TAAAGAGATTTAAAAAAT
64 TCAAAAT-AAATAATACTAATCTATTAATATTTCAAAAATTAATAACT-AAGAGATTAAAAAAAT
* ** * * * * * * *
76060 AACTT-TGTTTACTAAACAAATTTAAATAATTAGGACTGTTTGAATAATTATC
127 AA-TTCTTTTTACCGAACCAATTCAAATAGTTA-AACTATTTGAACAATTATA
* * * * *
76112 TATTTGAAAT-AGCTACAACCTTTTGTTTTGTAATAAAAGAATTTTTTCTGTTCAT-CTAAGCTT
1 TATTTCAAATCA-TTATAACCTTTTG-TTTGTCATAAAACAATTTTTT-TGTTCATAC-AAGCTT
76175 ATT
62 ATT
76178 TTGAATAAAA
Statistics
Matches: 748, Mismatches: 172, Indels: 75
0.75 0.17 0.08
Matches are distributed among these distances:
173 7 0.01
174 51 0.07
175 44 0.06
176 72 0.10
177 176 0.24
178 10 0.01
179 28 0.04
180 86 0.11
181 272 0.36
182 2 0.00
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.40
Consensus pattern (177 bp):
TATTTCAAATCATTATAACCTTTTGTTTGTCATAAAACAATTTTTTTGTTCATACAAGCTTATTC
AAAATAAATAATACTAATCTATTAATATTTCAAAAATTAATAACTAAGAGATTAAAAAAATAATT
CTTTTTACCGAACCAATTCAAATAGTTAAACTATTTGAACAATTATA
Found at i:75818 original size:356 final size:355
Alignment explanation
Indices: 75094--76177 Score: 835
Period size: 356 Copynumber: 3.0 Consensus size: 355
75084 TTGTTTTTTA
* * *
75094 TCATACATGATTATTCGAAATAAAAT--AATAATTTATTAATCTTTCAAAAATTAATAAGAGATT
1 TCATACAAGCTTATTC-AAATAAAATAAAATAATTTATTAATATTTCAAAAATTAATAAGAGATT
* * * * *
75157 TAAAAAATGAATATGTTTACCGAATCAGTTCAAATAGTTATAACTATTTGAACAATTCTATACTT
65 TAAAAAATGAATATGTTTACCGAACCAGTTAAAAAAATTATAACTATTTGAACAATTATATACTT
*
75222 CAAATCATTATAACCTTTTGTTATATCATAAAACAATTATTTTTGTTCATACAAGCTTATTCAAA
130 CAAATCATTATAACCTTTTGTTATATCATAAAACAAATATTTTTGTTCATACAAGCTTATTCAAA
*
75287 ATGAAACAATACTAATCTAATAATATTCCAAAAATTAATAACTAAGGGATTAAAAAAATAAATTT
195 ATGAAACAATACTAATCTAATAATATTCCAAAAATT-ATAACTAAGGGATTAAAAAAATAAATCT
* * * * * * *
75352 TTTTGTCGAACCAATTCAAATAGTTAAGACTGTATGAATAATTATCTATTTCAAATCGTTATGAC
259 ATGTATCAAACCAATTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCATTATGAC
75417 CTTTTGTCTTGTCATAAAACAATTTTCTCAGT
324 CTTTTGTCTTGTCATAAAACAATTTTCTCAGT
*
75449 TCATACTAGCTTATTCAAAGTAAAATAAAATGAATTTATTAATATTTCAAAAATACATAAGTAAG
1 TCATACAAGCTTATTCAAA-TAAAATAAAAT-AATTTATTAATATTTCAAAAAT---TAA-TAAG
* * * *
75514 AGATTTAAAAAAT-AATTCTTTTTACCTAACCAGTTAAAAAAATTAT-ACTATTTGAACCATTAT
60 AGATTTAAAAAATGAA-TATGTTTACCGAACCAGTTAAAAAAATTATAACTATTTGAACAATTAT
* * * * * * * * *
75577 ATATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAAATGTTTTTGTTCATATAAGTTTA
124 ATACTTCAAATCATTATAACCTTTTGTTATATCATAAAACAAATATTTTTGTTCATACAAGCTTA
* * * * * * *
75642 TTC-AAAT-AAAGTAATACTAATCTATTAATATTTCAAAAA-T-TAA-TAAGTGATTTAGACAAT
189 TTCAAAATGAAA-CAATACTAATCTAATAATATTCCAAAAATTATAACTAAGGGATTAAAAAAAT
* * * * * *
75702 AAATCTATGTATCAAACTAGTTCAAATAGTTATGACTATTTGAGCAATTATTTATTTCAAATCAT
253 AAATCTATGTATCAAACCAATTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCAT
* * **
75767 TATGACTTTTTGTTTTGTTGTAAAACAATTGTT-TCTA-T
318 TATGACCTTTTGTCTTGTCATAAAACAATT-TTCTC-AGT
* * * * ** *
75805 TCTTGCAAGCTTATTTGC-ATTAAAATAATACTAATTTATTAATATTTGGACAATTAGTCAGTAA
1 TCATACAAGCTTA-TT-CAAATAAAATAA-AATAATTTATTAATATTTCAAAAATTA---A-TAA
* * * * * * * * * * * * *
75869 AAAATTT--TAAA--AACATGTTTACCGCACTAGATCAAACAATCATGACAATTTGAATAATTAT
59 GAGATTTAAAAAATGAATATGTTTACCGAACCAGTTAAAAAAATTATAACTATTTGAACAATTAT
* * * * * ** * ** * *
75930 CTATTTCAAATCATTATGACCTTTTGATT-TGTCATAAAAGAGTTGTTTCAGTCCATATAAGCTT
124 ATACTTCAAATCATTATAACCTTTTG-TTATATCATAAAACAAATATTTTTGTTCATACAAGCTT
* * * * * * *
75994 ATTCAAAATAAAATAATACTAATTTATTAATAATCCAAAAATTAATAA-TAAAGAGATTTAAAAA
188 ATTCAAAATGAAACAATACTAATCTAATAATATTCCAAAAATT-ATAACT-AAGGGATTAAAAAA
* * * * * * * * * *
76058 AT-AA-CTTTGTTTACTAAACAAATTTAAATAATTAGGACTGTTTGAATAATTATCTATTTGAAA
251 ATAAATCTATGTAT-C-AAACCAATTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAA
* ** * * * * *
76121 T-AGCTACAACCTTTTGTTTTGTAATAAAAGAATTTTTTCTGT
314 TCA-TTATGACCTTTTGTCTTGTCATAAAACAATTTTCTCAGT
76163 TCAT-CTAAGCTTATT
1 TCATAC-AAGCTTATT
76178 TTGAATAAAA
Statistics
Matches: 587, Mismatches: 110, Indels: 62
0.77 0.14 0.08
Matches are distributed among these distances:
352 20 0.03
353 72 0.12
354 37 0.06
355 23 0.04
356 146 0.25
357 27 0.05
358 111 0.19
359 4 0.01
360 29 0.05
361 78 0.13
362 40 0.07
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.39
Consensus pattern (355 bp):
TCATACAAGCTTATTCAAATAAAATAAAATAATTTATTAATATTTCAAAAATTAATAAGAGATTT
AAAAAATGAATATGTTTACCGAACCAGTTAAAAAAATTATAACTATTTGAACAATTATATACTTC
AAATCATTATAACCTTTTGTTATATCATAAAACAAATATTTTTGTTCATACAAGCTTATTCAAAA
TGAAACAATACTAATCTAATAATATTCCAAAAATTATAACTAAGGGATTAAAAAAATAAATCTAT
GTATCAAACCAATTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCATTATGACCT
TTTGTCTTGTCATAAAACAATTTTCTCAGT
Done.