Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168348.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_57, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 144347
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
File 3 of 4
Found at i:76268 original size:24 final size:24
Alignment explanation
Indices: 76185--76262 Score: 72
Period size: 24 Copynumber: 3.3 Consensus size: 24
76175 ATTTTGAATA
* * *
76185 AAATAATATTTAATATTAAATAAAT
1 AAATTATATTTAATAAT-ATTAAAT
**
76210 AAA-TATAGTTTTGTAATATTAAAT
1 AAATTATA-TTTAATAATATTAAAT
76234 AAATTATATTTAATAAT-TTAAA-
1 AAATTATATTTAATAATATTAAAT
76256 AAATTAT
1 AAATTAT
76263 TAATTTTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
22 7 0.16
23 5 0.11
24 19 0.43
25 13 0.30
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (24 bp):
AAATTATATTTAATAATATTAAAT
Found at i:76479 original size:34 final size:37
Alignment explanation
Indices: 76436--76507 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 37
76426 TTTATTTAAC
76436 TAATTTTATATATTT-ATAATAA-AA-TATAA-TATAA
1 TAATTTTATAT-TTTGATAATAATAATTATAATTATAA
*
76470 TAATTTTATATTTTGTTAATAATAATTATAATTATAA
1 TAATTTTATATTTTGATAATAATAATTATAATTATAA
76507 T
1 T
76508 GGTAATTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
33 3 0.09
34 17 0.52
35 2 0.06
36 5 0.15
37 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (37 bp):
TAATTTTATATTTTGATAATAATAATTATAATTATAA
Found at i:77140 original size:22 final size:20
Alignment explanation
Indices: 77096--77141 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
77086 TTATTTAAGT
*
77096 TTAATTAATATAAACTATAA
1 TTAATTAATATAAAATATAA
*
77116 TTAATATAATAATAAAATATTA
1 TTAAT-TAAT-ATAAAATATAA
77138 TTAA
1 TTAA
77142 ACTTAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 4 0.18
22 13 0.59
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
TTAATTAATATAAAATATAA
Found at i:77275 original size:18 final size:18
Alignment explanation
Indices: 77231--77277 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
77221 AATTAGTTTT
*
77231 TAATTAT-ATAAATTATT
1 TAATTATAATAAATTATA
*
77248 TAAATTATAATAATTTATA
1 T-AATTATAATAAATTATA
77267 TAATTATAATA
1 TAATTATAATA
77278 TATAATTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 1 0.04
18 16 0.62
19 9 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAATTATAATAAATTATA
Found at i:77293 original size:10 final size:10
Alignment explanation
Indices: 77221--77301 Score: 53
Period size: 9 Copynumber: 8.1 Consensus size: 10
77211 TCTTCTAATA
*
77221 AATTAGTTTTT
1 AATTA-TTTAT
*
77232 AATTATATA-
1 AATTATTTAT
77241 AATTATTTA-
1 AATTATTTAT
*
77250 AATTA-TAAT
1 AATTATTTAT
*
77259 AATT-TATAT
1 AATTATTTAT
77268 AATTATAATATAT
1 AATTAT--T-TAT
*
77281 AATTGTTTAT
1 AATTATTTAT
77291 AATTATTTAT
1 AATTATTTAT
77301 A
1 A
77302 TATGATTATA
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
8 2 0.04
9 23 0.42
10 16 0.29
11 6 0.11
13 8 0.15
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (10 bp):
AATTATTTAT
Found at i:77310 original size:20 final size:20
Alignment explanation
Indices: 77251--77317 Score: 63
Period size: 18 Copynumber: 3.6 Consensus size: 20
77241 AATTATTTAA
*
77251 ATTATAATAATTTATATA--
1 ATTATAATTATTTATATATG
*
77269 ATTATAA-TATATA-AT-TG
1 ATTATAATTATTTATATATG
*
77286 TTTATAATTATTTATATATG
1 ATTATAATTATTTATATATG
*
77306 ATTATAAATATT
1 ATTATAATTATT
77318 ATTAATAGTC
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
16 2 0.05
17 10 0.26
18 12 0.32
19 2 0.05
20 12 0.32
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (20 bp):
ATTATAATTATTTATATATG
Found at i:77909 original size:13 final size:13
Alignment explanation
Indices: 77891--77915 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77881 TTATATATTT
77891 AATTATATAATAA
1 AATTATATAATAA
77904 AATTATATAATA
1 AATTATATAATA
77916 CTAATTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AATTATATAATAA
Found at i:78283 original size:12 final size:12
Alignment explanation
Indices: 78244--78319 Score: 56
Period size: 12 Copynumber: 6.4 Consensus size: 12
78234 AAATATAATT
78244 ATATATT-AATA
1 ATATATTAAATA
78255 AT-TATTATAA-A
1 ATATATTA-AATA
*
78266 TTATATTAAATTA
1 ATATATTAAA-TA
78279 A-ATATTCAAATA
1 ATATATT-AAATA
78291 ATATATTAACTATA
1 ATATATTAA--ATA
78305 AT-TATT-AATA
1 ATATATTAAATA
78315 ATATA
1 ATATA
78320 AATATAATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 20
0.71 0.03 0.27
Matches are distributed among these distances:
10 9 0.17
11 8 0.15
12 18 0.34
13 13 0.25
14 5 0.09
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (12 bp):
ATATATTAAATA
Found at i:78314 original size:21 final size:20
Alignment explanation
Indices: 78228--78446 Score: 68
Period size: 20 Copynumber: 11.3 Consensus size: 20
78218 TAATATTACC
*
78228 AATTATAA-ATA-TAATTAT
1 AATTATAATATATTAAATAT
78246 ATATTAATAAT-TATT--ATA-
1 A-ATT-ATAATATATTAAATAT
* *
78264 AATTATATTAAATTAAATATT
1 AATTATAATATATTAAATA-T
*
78285 CAA--ATAATATATTAACTAT
1 -AATTATAATATATTAAATAT
78304 AATTATTAATA-ATATAAATAT
1 AATTA-TAATATAT-TAAATAT
78325 AATTATAATATTATT-AAT-T
1 AATTATAATA-TATTAAATAT
* *
78344 AATAACAAATATTATTTAAATAT
1 AATTA-TAATA-TA-TTAAATAT
78367 --TT-TAATA-A-T-AATAT
1 AATTATAATATATTAAATAT
*
78381 CATATATAATA-ATTATAAT-T
1 AAT-TATAATATATTA-AATAT
**
78401 GATATTATAATATA-TATTTAT
1 -A-ATTATAATATATTAAATAT
78422 AAATTATAATATATT-AATA-
1 -AATTATAATATATTAAATAT
78441 AATTAT
1 AATTAT
78447 TTTTACTTAC
Statistics
Matches: 152, Mismatches: 17, Indels: 64
0.65 0.07 0.27
Matches are distributed among these distances:
14 5 0.03
15 1 0.01
16 5 0.03
17 8 0.05
18 16 0.11
19 19 0.12
20 51 0.34
21 36 0.24
22 10 0.07
23 1 0.01
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTATAATATATTAAATAT
Found at i:78323 original size:33 final size:33
Alignment explanation
Indices: 78301--78439 Score: 82
Period size: 32 Copynumber: 4.3 Consensus size: 33
78291 ATATATTAAC
78301 TATAATT-ATTAATAATATAAATATAATTATAA
1 TATAATTAATTAATAATATAAATATAATTATAA
* * *
78333 TATTATTAATTAAT-A-ACAAATATTATT-TAA
1 TATAATTAATTAATAATATAAATATAATTATAA
* * *
78363 -ATATTTTAA-TAATAATATCATATATAA-TA-AT
1 TATA-ATTAATTAATAATAT-AAATATAATTATAA
*
78394 TATAATTGATATT-ATAATATATATTTATAAATTATAA
1 TATAATT-A-ATTAATAATATA-A-ATAT-AATTATAA
78431 TAT-ATTAAT
1 TATAATTAAT
78440 AAATTATTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 28
0.66 0.11 0.23
Matches are distributed among these distances:
29 6 0.08
30 8 0.10
31 15 0.19
32 18 0.23
33 14 0.18
34 6 0.08
35 3 0.04
36 5 0.06
37 4 0.05
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (33 bp):
TATAATTAATTAATAATATAAATATAATTATAA
Found at i:78434 original size:25 final size:27
Alignment explanation
Indices: 78374--78435 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 27
78364 TATTTTAATA
78374 ATAATATCATATATAATAATTATAATTG
1 ATAATAT-ATATATAATAATTATAATTG
* *
78402 ATATTATA-ATAT-ATATTTATAAATT-
1 ATAATATATATATAATAATTAT-AATTG
78427 ATAATATAT
1 ATAATATAT
78436 TAATAAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
25 14 0.48
26 8 0.28
27 1 0.03
28 6 0.21
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (27 bp):
ATAATATATATATAATAATTATAATTG
Found at i:78435 original size:18 final size:18
Alignment explanation
Indices: 78228--78446 Score: 78
Period size: 17 Copynumber: 12.3 Consensus size: 18
78218 TAATATTACC
78228 AATTATAAATATAATT-ATA
1 AATTAT-AATAT-ATTAATA
*
78247 TATTAATAAT-TATT-ATA
1 AATT-ATAATATATTAATA
* *
78264 AATTATATTAAATTAA-A
1 AATTATAATATATTAATA
*
78281 TATTCAAATAATATATTAACTA
1 AATT---ATAATATATTAA-TA
*
78303 TAATTATTAATAATATAAATA
1 -AATTA-TAAT-ATATTAATA
*
78324 TAATTATAATATTATTAATT
1 -AATTATAATA-TATTAATA
* *
78344 AATAACAA-ATATT-AT-
1 AATTATAATATATTAATA
*
78359 --TTA-AATATTTTAATA
1 AATTATAATATATTAATA
* *
78374 ATAATATCATATA-TAAT-
1 A-ATTATAATATATTAATA
78391 AATTATAATTGATATT-AT-
1 AATTATAA-T-ATATTAATA
78409 AA-TAT-ATAT-TT-ATA
1 AATTATAATATATTAATA
78423 AATTATAATATATTAATA
1 AATTATAATATATTAATA
78441 AATTAT
1 AATTAT
78447 TTTTACTTAC
Statistics
Matches: 153, Mismatches: 20, Indels: 55
0.67 0.09 0.24
Matches are distributed among these distances:
12 2 0.01
13 10 0.07
14 6 0.04
15 4 0.03
16 16 0.10
17 27 0.18
18 25 0.16
19 18 0.12
20 23 0.15
21 12 0.08
22 7 0.05
23 3 0.02
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
AATTATAATATATTAATA
Found at i:78489 original size:17 final size:18
Alignment explanation
Indices: 78457--78502 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
78447 TTTTACTTAC
78457 TATTAATAAATAATA-TTA
1 TATTAA-AAATAATATTTA
78475 TATTATAAAAT-ATATTTA
1 TATTA-AAAATAATATTTA
78493 TATTAAAAAT
1 TATTAAAAAT
78503 TAAACTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 8 0.31
18 17 0.65
19 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTAAAAATAATATTTA
Found at i:80384 original size:27 final size:27
Alignment explanation
Indices: 80352--80403 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
80342 GTAATTTTAA
80352 TAATTATT-TATAAATTAATTAAATATT
1 TAATTATTAT-TAAATTAATTAAATATT
* *
80379 TAATTATTATTTAATTAATTTAATA
1 TAATTATTATTAAATTAATTAAATA
80404 ATTGTATAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
TAATTATTATTAAATTAATTAAATATT
Found at i:80385 original size:23 final size:23
Alignment explanation
Indices: 80350--80396 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
80340 TAGTAATTTT
*
80350 AATAATTATTTATAAATTAATTA
1 AATAATTAATTATAAATTAATTA
* * *
80373 AATATTTAATTATTATTTAATTA
1 AATAATTAATTATAAATTAATTA
80396 A
1 A
80397 TTTAATAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AATAATTAATTATAAATTAATTA
Found at i:80534 original size:11 final size:11
Alignment explanation
Indices: 80518--80547 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
80508 CTATTTACAC
80518 AATTATATCAT
1 AATTATATCAT
*
80529 AATTATATCGT
1 AATTATATCAT
80540 AATTATAT
1 AATTATAT
80548 TAGATACCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (11 bp):
AATTATATCAT
Found at i:80867 original size:26 final size:26
Alignment explanation
Indices: 80837--80883 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
80827 TTAATATTAC
80837 TTAATT-AT-ATAC-TA-TTAAATAA
1 TTAATTAATAATACTTATTTAAATAA
80859 TTAATTAATAATACTTATTTAAATA
1 TTAATTAATAATACTTATTTAAATA
80884 TAAGTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 6 0.29
23 2 0.10
24 4 0.19
25 2 0.10
26 7 0.33
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (26 bp):
TTAATTAATAATACTTATTTAAATAA
Found at i:81175 original size:23 final size:23
Alignment explanation
Indices: 81149--81203 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
81139 AAAATATATT
* *
81149 TATTTTTAATATTTGATT-ATAAA
1 TATTTATAATAATT-ATTAATAAA
81172 TATTTATAATAATTATTAATAAA
1 TATTTATAATAATTATTAATAAA
81195 TAATTTATA
1 T-ATTTATA
81204 TAAACAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 3 0.11
23 18 0.64
24 7 0.25
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TATTTATAATAATTATTAATAAA
Found at i:81314 original size:238 final size:233
Alignment explanation
Indices: 80897--81371 Score: 887
Period size: 238 Copynumber: 2.0 Consensus size: 233
80887 GTTATATTAG
*
80897 TTATAAAAATATATTTATTTTTAATATTTGATTATAAATATTTATGATAATTATTAATAAATAAT
1 TTATAAAAATATATTTATTTTTAATATTTGATTATAAATATTTATAATAATTATTAATAAATAAT
*
80962 TTATATAAACAAAATAATTAATATAACTATAACAATATATGTGTTAATTATAATTATAAATTAAA
66 TTATATAAACAAAATAATTAATATAACTATAACAATATATATGTTAATTATAATTATAAATTAAA
81027 AGATTATGTTTAATTATATCTATTATATTTATCAAATATAAATAAATAAATAAATAATAAATAAT
131 AGATTATGTTTAATTATATCTATTATATTTATCAAATATAAATAAATAAAT-AAT--T-AATAAT
81092 AATTAATTGATTTTATAATTTGGTAAAATCAAATAGTCATAA
192 AATTAATTGATTTTATAATTTGGTAAAATCAAATAGTCATAA
81134 TTATAAAAATATATTTATTTTTAATATTTGATTATAAATATTTATAATAATTATTAATAAATAAT
1 TTATAAAAATATATTTATTTTTAATATTTGATTATAAATATTTATAATAATTATTAATAAATAAT
81199 TTATATAAACAAAAATAATTAATATAACTATAACAATATATATGTTAATTATAATTATAAATTAA
66 TTATATAAAC-AAAATAATTAATATAACTATAACAATATATATGTTAATTATAATTATAAATTAA
81264 AAGATTATGTTTAATTATATCTATTATATTTATCAAATATAAATAAATAAATAATTAATAATAAT
130 AAGATTATGTTTAATTATATCTATTATATTTATCAAATATAAATAAATAAATAATTAATAATAAT
81329 TAATTGATTTTATAATTTGGTAAAATCAAATAGTCATAA
195 TAATTGATTTTATAATTTGGTAAAATCAAATAGTCATAA
81368 TTAT
1 TTAT
81372 TTGAACTAGT
Statistics
Matches: 235, Mismatches: 2, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
234 52 0.22
235 1 0.00
237 77 0.33
238 105 0.45
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.44
Consensus pattern (233 bp):
TTATAAAAATATATTTATTTTTAATATTTGATTATAAATATTTATAATAATTATTAATAAATAAT
TTATATAAACAAAATAATTAATATAACTATAACAATATATATGTTAATTATAATTATAAATTAAA
AGATTATGTTTAATTATATCTATTATATTTATCAAATATAAATAAATAAATAATTAATAATAATT
AATTGATTTTATAATTTGGTAAAATCAAATAGTCATAA
Found at i:83423 original size:181 final size:178
Alignment explanation
Indices: 83061--84075 Score: 758
Period size: 177 Copynumber: 5.7 Consensus size: 178
83051 AATAAGATAT
* * * * * *
83061 TATTTCAAATCGTTATCACTTTTTGTTTGGTCATATAACAATTGTTT-TTTATCATACATGATTA
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTGT-TCATACATGCTTA
** * * *
83125 TTTGAAATAAAAT-A-A-TAATTTATTAATCTTTCAAAAATTA-GT-A-AGATTTAAAAAATGAA
65 TTCAAAATAAAATAATACTAATATATTAATATTTCAAAAATTATATAAGAGATTTAAAAAAT-AA
* * * * *
83184 A-CTATTTAC-CGAACTAGTTCAAATAGTTATAACTATTTGAACAATTCTA
129 ATTTATTT-CTCAAACCAGTTCAAATAGTTATGACTATTTGAACAATTATA
* * * * * *
83233 TACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTCTGTTAATACATGCTTAT
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACATGCTTAT
* * * * *
83298 TCAAAATAAAACAATACTAATCTAATAATATTCCAAAAATTGATATCAAAGGGATTTAAAAAATA
66 TCAAAATAAAATAATACTAATATATTAATATTTCAAAAATT-ATAT--AAGAGATTTAAAAAATA
* * * *
83363 AATTTGTTTCTCAAACCAATTCAAATAGTTGA-GACTATATGAACAATTATC
128 AATTTATTTCTCAAACCAGTTCAAATAGTT-ATGACTATTTGAACAATTATA
* * * * **
83414 TTTTTCAAATCGTTATGGCTTTTTGTCTTGTCATAAAACAATT-TTCTCAATTCATAC-TAGCTT
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTT-TCTGTTCATACAT-GCTT
** * * *
83477 ATTTGAAATAAAATAA-AATGAATTTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAA
64 ATTCAAAATAAAATAATACT-AATATATTAATATTTC-AAAAATTAT-A-TAAGAGATTTAAAAA
* * * **
83541 AT-AATTCTTTTTAC-CTAACCAGTTCAAAAACATAT-ACTATTTGAACAATTATA
125 ATAAATT-TATTT-CTCAAACCAGTTCAAATAGTTATGACTATTTGAACAATTATA
* * * * * * *
83594 TATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAAATGTTTTTGTTCATATAAGTTTAT
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACATGCTTAT
* * * *
83659 TCAGAATAAAATAATACTAATATATTAATATTTCAAAAATTA-ATAAGTGATTTAGACAATAAAT
66 TCAAAATAAAATAATACTAATATATTAATATTTCAAAAATTATATAAGAGATTTAAAAAATAAAT
* * * * * * *
83723 CTATGTATCAAACTAGTTCAAATAGCTATGACTATTTGAGCAATTATT
131 TTATTTCTCAAACCAGTTCAAATAGTTATGACTATTTGAACAATTATA
* ** * * *
83771 TATTTCAAATCATTATGACTTTTTATTTTGTTGTAAAACAATTGTTTCTATTCATGCAAGCTTAT
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACATGCTTAT
*** * * ** * * * * *
83836 TTGCATTAAAATAATACTAATTTATTAATATTTGGACAATTAGTAAGTAAAAAATTTTAAAAACA
66 TCAAAATAAAATAATACTAATATATTAATATTTCAAAAATTA-T-A-TAAGAGATTTAAAAAATA
** * * * * * * * *
83901 TGTTTA--TCGC--ACTAGATCAAATAATCATGACAATTTGAATAATTATC
128 AATTTATTTCTCAAACCAGTTCAAATAGTTATGACTATTTGAACAATTATA
* * * * * * * *
83948 TATTTCAAATCATTATGACCTTTTGATTTGTCATAAAAGAGTTGTTTCAGTCCATATAAGCTTAT
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACATGCTTAT
* * *
84013 TCAAAATAAAATAATACTAATTTATTAATAATCCAAAAATTAATAATAAAGAGATTTAAAAAA
66 TCAAAATAAAATAATACTAATATATTAATATTTCAAAAATT-AT-AT-AAGAGATTTAAAAAA
84076 CGACTTTGCT
Statistics
Matches: 656, Mismatches: 153, Indels: 63
0.75 0.18 0.07
Matches are distributed among these distances:
172 60 0.09
173 3 0.00
174 1 0.00
175 20 0.03
176 35 0.05
177 238 0.36
178 1 0.00
179 9 0.01
180 106 0.16
181 173 0.26
182 9 0.01
183 1 0.00
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (178 bp):
TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACATGCTTAT
TCAAAATAAAATAATACTAATATATTAATATTTCAAAAATTATATAAGAGATTTAAAAAATAAAT
TTATTTCTCAAACCAGTTCAAATAGTTATGACTATTTGAACAATTATA
Found at i:84829 original size:16 final size:16
Alignment explanation
Indices: 84808--84841 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
84798 TCTATTATTG
84808 TTATATTAATT-TAAAT
1 TTATATT-ATTATAAAT
84824 TTATATTATTATAAAT
1 TTATATTATTATAAAT
84840 TT
1 TT
84842 TGTAATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATATTATTATAAAT
Found at i:84897 original size:20 final size:21
Alignment explanation
Indices: 84851--84897 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
84841 TTGTAATATT
* *
84851 TTAATTAAGTAATATATATTA
1 TTAATTAAGTAAAATATATAA
*
84872 TT-ATTAATTAAAATA-ATAA
1 TTAATTAAGTAAAATATATAA
84891 TTAATTA
1 TTAATTA
84898 TAACATTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 5 0.23
20 15 0.68
21 2 0.09
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
TTAATTAAGTAAAATATATAA
Found at i:85328 original size:172 final size:171
Alignment explanation
Indices: 85113--85424 Score: 395
Period size: 172 Copynumber: 1.8 Consensus size: 171
85103 TTGTTTAAAT
* * *
85113 AGTTATGACTATTTGAGCAATTATTTATTTCAAATCTTTATGACATTTT-TTTCTGTTATA-AAA
1 AGTTATGACTATTTGAACAATTATCTATTTCAAATCTTTATGACATTTTGTTT-TGTCATAGAAA
* * *
85176 -CAATTGTTTCTA-TTCATACAAGCTTATTTGG-ATTAAAATAATATTCAT-TTATTAATATTTT
65 GC--TTGTTTC-AGTTCATACAAGCTTA-TTGGAAATAAAATAATA-CCATGTTATTAATATTCT
*
85237 GACAATTAATAAGTTAAAAATTTTAGAAATAAATATTCTAACCTAGAC
125 GAAAATTAATAA-TTAAAAATTTTAGAAATAAATATTCTAACCTAGAC
* * *
85285 AGTTATGACTATTTGAATAGTTATCTATTTCAAAT-TGTTATGACCTTTTGTTTTGTCATAGAAA
1 AGTTATGACTATTTGAACAATTATCTATTTCAAATCT-TTATGACATTTTGTTTTGTCATAGAAA
* *
85349 GCTTGTTTCAGTTCATATAAGGTTATTGGAAATAAAATAATACCATGTTATTAATATTCTGAAAA
65 GCTTGTTTCAGTTCATACAAGCTTATTGGAAATAAAATAATACCATGTTATTAATATTCTGAAAA
85414 TTAATAATTAA
130 TTAATAATTAA
85425 GAGATTTAAA
Statistics
Matches: 121, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
171 13 0.11
172 101 0.83
173 6 0.05
174 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (171 bp):
AGTTATGACTATTTGAACAATTATCTATTTCAAATCTTTATGACATTTTGTTTTGTCATAGAAAG
CTTGTTTCAGTTCATACAAGCTTATTGGAAATAAAATAATACCATGTTATTAATATTCTGAAAAT
TAATAATTAAAAATTTTAGAAATAAATATTCTAACCTAGAC
Found at i:85782 original size:182 final size:179
Alignment explanation
Indices: 84927--86170 Score: 1008
Period size: 182 Copynumber: 7.0 Consensus size: 179
84917 TTACCTAATC
* * * *
84927 AGTTTAAATAATTATGACTATTTGAACAATTA-CATATTTCAAATCATTATTACTTTTTGTTTTG
1 AGTTTAAATAGTTATGACTATTTGAATAATTATC-TATTTCAAATC-TTATGACCTTTTGTTTTG
* * * * * * * * *
84991 TCATAAAACAAATGGCTT-TGTTCATATAAGTTTATTAGGAATAAAGTAATACTAATCTATTAAT
64 TCATAAAA-TAATTGTTTCTGTTCATATAAGCTTATTCGAAATAAAATAATATTAATTTATTAAT
* *
85055 ATTTCAAAAATTAAAAAGT----GATTTAAAAAATAAATCTATTTATCAAACT
128 A-TTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTATCAAACA
* ** * *
85104 TGTTTAAATAGTTATGACTATTTGAGCAATTATTTATTTCAAATCTTTATGACATTTT-TTTCTG
1 AGTTTAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC-TTATGACCTTTTGTTT-TG
* * * * * * * *
85168 TTATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGATTAAAATAATATTCATTTATTAATA
64 TCATAAAATAATTGTTTCTGTTCATATAAGCTTATTCGAAATAAAATAATATTAATTTATTAATA
** * * * *
85233 TTTTGACAATTAATAAGTTAAAA-ATTTTAGAAATAAA--TA--T-TCTAAC-
129 -TTCAAAAATTAATAAG-TAAAAGATTTAAAAAATAAATCTATTTATCAAACA
* * * * *
85279 ---CTAGACAGTTATGACTATTTGAATAGTTATCTATTTCAAATTGTTATGACCTTTTGTTTTGT
1 AGTTTAAATAGTTATGACTATTTGAATAATTATCTATTTCAAA-TCTTATGACCTTTTGTTTTGT
** * * * **
85341 CATAGAAA-GCTTGTTTCAGTTCATATAAGGTTATTGGAAATAAAATAATA-CCATGTTATTAAT
65 CATA-AAATAATTGTTTCTGTTCATATAAGCTTATTCGAAATAAAATAATATTAAT-TTATTAAT
* * * * *
85404 ATTCTGAAAATTAATAATTAAGAGATTTAAAAAATGAATCTATTTACCAAACA
128 ATTC-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTATCAAACA
* * * * ** * *
85457 AGTTTAAATAATTATGGCCATTTGAACAATTAT-TGATTTGGAAT-TGCTATAACCTTTTGGTTT
1 AGTTTAAATAGTTATGACTATTTGAATAATTATCT-ATTTCAAATCT--TATGACCTTTTGTTTT
* * **
85520 GTCATATAATGATTGTATT-TGTTCATATAAGCTTACTTCG-AATAAAATAATACAAATTTATTA
63 GTCATAAAATAATTGT-TTCTGTTCATATAAGCTTA-TTCGAAATAAAATAATATTAATTTATTA
*
85583 ATATT-AAGACAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTATCGAACA
126 ATATTCAA-A-AATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTATCAAACA
* * * * *
85638 AATTCAAATCA-TTATGACTATCTGAATAATTATTTATTTCAAATTCTTATGACTTTTTTGTTTT
1 AGTTTAAAT-AGTTATGACTATTTGAATAATTATCTATTTCAAA-TCTTATGAC-CTTTTGTTTT
* * * * *
85702 GTCATAAAATAATTGTTTCCGTCCATATGAGCTTATTCGAATTAAAATAATATTGATTTATTAAT
63 GTCATAAAATAATTGTTTCTGTTCATATAAGCTTATTCGAAATAAAATAATATTAATTTATTAAT
* * * *
85767 AATTCAACAATTAATAAGTAAAAAATTTAAAAAA-AAA---GTTTACCAAACA
128 -ATTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTATCAAACA
* * * * * * *
85816 AGTTCAAATAGTCATGACTATTTGAATAATTATCTACTTCAAATCATTGTAACATTTTGTGTTGT
1 AGTTTAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC-TTATGACCTTTTGTTTTGT
* * ** * * * *
85881 AATAAAACAATTGTTTCAATTCATGTTAGCTTATTTGAAATAAAATAATATGAATTTATTAATAT
65 CATAAAATAATTGTTTCTGTTCATATAAGCTTATTCGAAATAAAATAATATTAATTTATTAATAT
* * * *
85946 TCCAAAAATTAAAAAGTAAAAGAATTAAAAAAATAAATCTGTTTATCGAACA
130 T-CAAAAATTAATAAGTAAAAG-ATTTAAAAAATAAATCTATTTATCAAACA
* *
85998 AGTTTAAATAGTTATGACTATCTT-AATAATTATCTATTTCAAAACAT-TGCAACCTTTTGTTTT
1 AGTTTAAATAGTTATGACTAT-TTGAATAATTATCTATTTCAAATCTTATG--ACCTTTTGTTTT
* * *
86061 GTCATAAAATAATTGGTTCTATTCAT-TCAAGCTTATTTC-AAATAAAATAATATAAATTTATTA
63 GTCATAAAATAATTGTTTCTGTTCATAT-AAGCTTA-TTCGAAATAAAATAATATTAATTTATTA
* * * *
86124 ATGTTCCAAAAATTAATAATTAAAA-ATTTTAAAAATAAATTTATTTA
126 ATATT-CAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTA
86171 AAAATTAATG
Statistics
Matches: 859, Mismatches: 154, Indels: 105
0.77 0.14 0.09
Matches are distributed among these distances:
171 9 0.01
172 114 0.13
173 7 0.01
174 2 0.00
176 18 0.02
177 197 0.23
178 60 0.07
179 7 0.01
180 24 0.03
181 189 0.22
182 222 0.26
183 8 0.01
184 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (179 bp):
AGTTTAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCTTATGACCTTTTGTTTTGTC
ATAAAATAATTGTTTCTGTTCATATAAGCTTATTCGAAATAAAATAATATTAATTTATTAATATT
CAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTATCAAACA
Found at i:86877 original size:359 final size:361
Alignment explanation
Indices: 86260--87416 Score: 992
Period size: 359 Copynumber: 3.2 Consensus size: 361
86250 TAAAAATTAA
* * *
86260 TAAGAGATTTAAAAACTAAATCTCTTTATC-AAACCAGTTCAAATAGTTATGACTATTTGAACAA
1 TAAGAGAATTAAAAAATAAATCTATTTATCGAAA-CAGTTCAAATAGTTATGACTATTTGAACAA
* ** ** * * * * * * * * * *
86324 TTATATATCTCCAATTGTTATGA-TTTTTGTTTTGTCTTAAAACATTTAATTTCTGTTCA-ACAA
65 TTATATATTTAAAATCATTATAACCTTATATTTTATCATAAAACAATT-ATTTATATTCATAAAA
* * * * * * * *
86387 GCTTATTTAGAGTAAAATATTGCTAAAT-TAATAATATTCT-AAACATTAATAAGTAAG-GGTTT
129 GCTTATTCAAAATAAAATAATACT-AATCTAATAATATTATGAAA-ATTAATAACTAAGAGATTT
** * * * *
86449 AAAAAATAAATGTGTTTGCTGAATCAATTCAAATAGTTAAGACTA-TTAGAACAATTATCTGTTT
192 AAAAAATAAATCAGTTTACTGAATCAATTCAAATAGTTAAGGCTATTTA-AATAATTATCTATTT
* * * * ** *
86513 CAAATCATTTTGACCTTTTGTTTAGTCATAAAATAATTG-CTTCAACTCATACGTGCTTATTCAA
256 CAAATCATTATGACATTTTGTTTTGTCATAAAACAATTGTCTTC-A-TCATACAAGCCTATTCAA
*
86577 AATAAAATAATACT-AATTTATTAACATTCAAAAAATTATTAAG
319 AATAAAATAATA-TGAATTTATTAACATTCAAAAAATTAATAAG
* * * * *
86620 TAAGA-AATTAGAAAAA-AAA-CTATTTA-CTAAACAAGTTCAAATATTTTTTACTATTTGAATA
1 TAAGAGAATTA-AAAAATAAATCTATTTATCGAAAC-AGTTCAAATAGTTATGACTATTTGAACA
* * *
86681 ATTATCTATTTAAAATCATTATGACCTTATATTTTATCATAAAACAATTGTTT-TAATTCATAAA
64 ATTATATATTTAAAATCATTATAACCTTATATTTTATCATAAAACAATTATTTAT-ATTCATAAA
* * * * * * * *
86745 AGCTTA-TCTAAAATAAAATAATATTACTTTATTAATATTAT-AAAATTGATAAGTTAGATATTT
128 AGCTTATTC-AAAATAAAATAATACTAATCTAATAATATTATGAAAATTAATAACTAAGAGATTT
* * * * *
86808 AAAACATAAATCAGTTTATTGAATCAATTCAAATAATTATGGCCATTTAAATAATTATCTATTTC
192 AAAAAATAAATCAGTTTACTGAATCAATTCAAATAGTTAAGGCTATTTAAATAATTATCTATTTC
* *
86873 AAATCATTATGA-ATTGTTGTTTTGTCATAAAACAATTGTTTTTCATCATACAAGCCTATTCAGA
257 AAATCATTATGACATT-TTGTTTTGTCATAAAACAATTG-TCTTCATCATACAAGCCTATTCAAA
* *
86937 ATAAAATAATATGAATTTATTAATATTTAAAAAATTAATAAG
320 ATAAAATAATATGAATTTATTAACATTCAAAAAATTAATAAG
* * * * *
86979 TAGGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTCAAATAGTTATGACTATTTGAACAAT
1 TAAGAGAATTAAAAAATAAATCTATTTATCGAAACAGTTCAAATAGTTATGACTATTTGAACAAT
** * * * * * * * *
87044 TATATATTTTCAATCGTTATAATCTTTTGTTTTGTCATAAAACAATTATTTATCTTCATACAAGG
66 TATATATTTAAAATCATTATAACCTTATATTTTATCATAAAACAATTATTTATATTCATAAAAGC
* * *
87109 TTATTCGAAATAAAATAATACTAATCTAATAATATTATGAAATTTAATAACTAATAGATTTAAAA
131 TTATTCAAAATAAAATAATACTAATCTAATAATATTATGAAAATTAATAACTAAGAGATTTAAAA
** * * *
87174 AATAAATTTGTTTACTGAACCAATTCAAATAGTTAAGGCTATATGAATAATTATCTATTTCAAAT
196 AATAAATCAGTTTACTGAATCAATTCAAATAGTTAAGGCTATTTAAATAATTATCTATTTCAAAT
* * * ** * ** *
87239 CGTTATGACATTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATATAAGTTTGTTCAAAATAAA
261 CATTATGACATTTTGTTTTGTCATAAAACAATTG-TCTTCATCATACAAGCCTATTCAAAATAAA
* * * *
87304 ATCATGTTAATTTATTAATATTTC-AAAAA-T--TAA-
325 ATAATATGAATTTATTAACA-TTCAAAAAATTAATAAG
* * * * * * * * *
87337 TAAGAGATTTAATAAATAAATCTATTTA-CCATACTAGTTTAATTAGTTATAACAATTTGAACAT
1 TAAGAGAATTAAAAAATAAATCTATTTATCGAAAC-AGTTCAAATAGTTATGACTATTTGAACAA
* *
87401 TTATTTATTTCAAATC
65 TTATATATTTAAAATC
87417 GTACTAAATA
Statistics
Matches: 643, Mismatches: 130, Indels: 50
0.78 0.16 0.06
Matches are distributed among these distances:
357 6 0.01
358 136 0.21
359 205 0.32
360 20 0.03
361 115 0.18
362 156 0.24
363 5 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (361 bp):
TAAGAGAATTAAAAAATAAATCTATTTATCGAAACAGTTCAAATAGTTATGACTATTTGAACAAT
TATATATTTAAAATCATTATAACCTTATATTTTATCATAAAACAATTATTTATATTCATAAAAGC
TTATTCAAAATAAAATAATACTAATCTAATAATATTATGAAAATTAATAACTAAGAGATTTAAAA
AATAAATCAGTTTACTGAATCAATTCAAATAGTTAAGGCTATTTAAATAATTATCTATTTCAAAT
CATTATGACATTTTGTTTTGTCATAAAACAATTGTCTTCATCATACAAGCCTATTCAAAATAAAA
TAATATGAATTTATTAACATTCAAAAAATTAATAAG
Found at i:86903 original size:180 final size:180
Alignment explanation
Indices: 86201--87340 Score: 918
Period size: 181 Copynumber: 6.3 Consensus size: 180
86191 AATTGATTCT
** * * * * * *
86201 ATTCATACAAAATTATTTAGAATAAAATAATACTATTTTATTACTATTTTAAAAA-T--TAA-TA
1 ATTCATACAAGCTTATTCAAAATAAAATAATATTAATTTATTAATA-TTAAAAAATTAATAAGTA
* ** * * * *
86262 AGAGATTTAAAAACTAAATCTCTTTA-TCAAACCAGTTCAAATAGTTATGACTATTTGAACAATT
65 AGAGATTTAAAAAATAAATCAGTTTACT-GAATCAATTCAAATAGTTATGACTATTTGAATAATT
* * * ** * * * *
86326 ATATATCTCCAATTGTTATGA-TTTTTGTTTTGTCTTAAAACATTTAATTTCT-
129 ATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATT-GTTT-TA
* * * * * ** * * * *
86378 GTTCA-ACAAGCTTATTTAGAGTAAAATATTGCTAAATTAATAATATTCTAAACATTAATAAGTA
1 ATTCATACAAGCTTATTCAAAATAAAATAATATTAATTTATTAATATT-AAAAAATTAATAAGTA
* ** * * * *
86442 AG-GGTTTAAAAAATAAATGTGTTTGCTGAATCAATTCAAATAGTTAAGACTATTAGAACAATTA
65 AGAGATTTAAAAAATAAATCAGTTTACTGAATCAATTCAAATAGTTATGACTATTTGAATAATTA
* * * * * * *
86506 TCTGTTTCAAATCATTTTGACCTTTTGTTTAGTCATAAAATAATTGCTTCA
130 TCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTGTTTTA
* ** * * *
86557 ACTCATACGTGCTTATTCAAAATAAAATAATACTAATTTATTAACATTCAAAAAATTATTAAGTA
1 ATTCATACAAGCTTATTCAAAATAAAATAATATTAATTTATTAATATT-AAAAAATTAATAAGTA
* * * * *
86622 AGA-AATTAGAAAAA-AAA-CTA-TTTACT-AAACAAGTTCAAATATTTTTTACTATTTGAATAA
65 AGAGATTTA-AAAAATAAATC-AGTTTACTGAATCAA-TTCAAATAGTTATGACTATTTGAATAA
* * * * *
86682 TTATCTATTTAAAATCATTATGACCTTATATTTTATCATAAAACAATTGTTTTA
127 TTATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTGTTTTA
* * * * *
86736 ATTCATAAAAGCTTA-TCTAAAATAAAATAATATTACTTTATTAATATTATAAAATTGATAAGTT
1 ATTCATACAAGCTTATTC-AAAATAAAATAATATTAATTTATTAATATTAAAAAATTAATAAGTA
* * * * * * *
86800 AGATATTTAAAACATAAATCAGTTTATTGAATCAATTCAAATAATTATGGCCATTTAAATAATTA
65 AGAGATTTAAAAAATAAATCAGTTTACTGAATCAATTCAAATAGTTATGACTATTTGAATAATTA
*
86865 TCTATTTCAAATCATTATGA-ATTGTTGTTTTGTCATAAAACAATTGTTTTTC
130 TCTATTTCAAATCATTATGACATT-TTGTTTTGTCATAAAACAATTG-TTTTA
* * *
86917 A-TCATACAAGCCTATTCAGAATAAAATAATATGAATTTATTAATATTTAAAAAATTAATAAGTA
1 ATTCATACAAGCTTATTCAAAATAAAATAATATTAATTTATTAATA-TTAAAAAATTAATAAGTA
* ** * *
86981 GGAGATTTAAAAAATAAATTTGTTTA-TCGAATCAGTTCAAATAGTTATGACTATTTGAACAATT
65 AGAGATTTAAAAAATAAATCAGTTTACT-GAATCAATTCAAATAGTTATGACTATTTGAATAATT
* * * *
87045 ATATATTTTC-AATCGTTATAATC-TTTTGTTTTGTCATAAAACAATT-ATTTA
129 ATCTA-TTTCAAATCATTATGA-CATTTTGTTTTGTCATAAAACAATTGTTTTA
* * * * * * * * *
87096 TCTTCATACAAGGTTATTCGAAATAAAATAATACTAATCTAATAATATTATGAAATTTAATAACT
1 -ATTCATACAAGCTTATTCAAAATAAAATAATATTAATTTATTAATATTA-AAAAATTAATAAGT
* ** * * * *
87161 AATAGATTTAAAAAATAAATTTGTTTACTGAACCAATTCAAATAGTTAAGGCTATATGAATAATT
64 AAGAGATTTAAAAAATAAATCAGTTTACTGAATCAATTCAAATAGTTATGACTATTTGAATAATT
* * *
87226 ATCTATTTCAAATCGTTATGACATTTTGTTTTGTCATAAAACAAATGTTTTT
129 ATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTGTTTTA
* * * * * * *
87278 GTTCATATAAGTTTGTTCAAAATAAAATCATGTTAATTTATTAATATTTCAAAAATTAATAAG
1 ATTCATACAAGCTTATTCAAAATAAAATAATATTAATTTATTAATA-TTAAAAAATTAATAAG
87341 AGATTTAATA
Statistics
Matches: 765, Mismatches: 163, Indels: 66
0.77 0.16 0.07
Matches are distributed among these distances:
175 2 0.00
176 36 0.05
177 5 0.01
178 26 0.03
179 192 0.25
180 191 0.25
181 301 0.39
182 12 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (180 bp):
ATTCATACAAGCTTATTCAAAATAAAATAATATTAATTTATTAATATTAAAAAATTAATAAGTAA
GAGATTTAAAAAATAAATCAGTTTACTGAATCAATTCAAATAGTTATGACTATTTGAATAATTAT
CTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTGTTTTA
Found at i:88514 original size:182 final size:182
Alignment explanation
Indices: 87946--89130 Score: 1026
Period size: 182 Copynumber: 6.5 Consensus size: 182
87936 AAAAGGTCAT
* * * ** * * *
87946 AATAAAATACTACTAATTTATTAATATTTCGAAACTTAATAACCAAGAAAATTAAAAAATAAATA
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT
* ** * * * * * ** *
88011 TAATTGTTGAA-CCAGTTCAAATAGTTAAGACTCTATGAATGATTATCTATTTCAAATCGTTATG
66 TATTTACTGAATCAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATG
* ** * * * ***
88075 ACATTTTCTTTTAACGTAAAACAATTGTTT-TGTTCATACAAGCTTATTTGG
131 ACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAA
* * ** *
88126 ATTAAAATAATACTAATTTAATAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAAAT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT
* ** ** * * *
88191 TGTTTACTGAATC-AGTTCAAATGGTTAAAATTATTAGAATAATTATCTATTTCATAAAATTGTT
66 TATTTACTGAATCAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTC---AAATTGTT
* * * * * * * * *
88255 TTGATATTTTATTTGGTCATATAATAATTCTTTCAGTTTATACAAGCTTATTCGA
128 ATGACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAA
* * * *
88310 AATAAAATAATATTAATTTATTAACA-TTCAAAAAATTAATAAGCAAGAGATTTGAAAAGATAAA
1 AATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTT-AAAAAATAAA
* * * *
88374 TTTATTTACCGAA-CAAGTTTAATTAATTATGACTATTTGAACAATTATCTATTTAAAATCT-TT
64 TTTATTTACTGAATCAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAT-TGTT
* * * * *
88437 ATGACATTTTGTTTTGTCATAAAATAATTATTTTAGTTCATAAAAGTTTATCCAA
128 ATGACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAA
* *
88492 AATAAAATAATACTACTTTATTAATATTTCAAAAATTAATAAGTAAGATATTTTAAAAAATAAAT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGA-TTTAAAAAATAAAT
** * * ** * * *
88557 CAATTTGCTAAATC-AGTTTGAATAATTATGGCCATTTGAACAACTATCTATTTCAAATTGTTAT
65 TTATTTACTGAATCAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTAT
* * * * * * *
88621 TACCTTGTGTTTTGTCATAAAACATTTATTTTTCA-AT-ATACAAGTTTATTCGA
130 GACATTTTGTTTTGTCATAAAACAATTA--TTTCAGTTCATACAAGCTTATTCAA
*
88674 AATAAAATAATACTAATTTATTAATATTTCAAGAA-T--TAA-TAAGAGATTTAAAAAATAAATT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT
* * * * *
88735 TGTTTACTGAACCAA-TTCAAATAAATATGACTATTTGAACAATTATCTATTTCAAATTGTTTTA
66 TATTTACTGAATCAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATG
* * * * * *
88799 ACCTTTTGTTCTATCACAAAACAATTGTTTCAGTTCATACAAGCTTATTCAG
131 ACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAA
* * * ** * *
88851 ATTAAAATAATACTAATTTAGTAAAATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT
* ** * * * * * * *
88916 TGTTTGTTGAAT-AAGTTGAAATAGTTAAGACTATATGAATAATGATTTATTTCAAATTGTTATG
66 TATTTACTGAATCAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATG
* *
88980 AGC-TTTTGTTTTGTCATAAAA-ATATTATTTCA-TCTCATACAAGTTTATTCAGG
131 A-CATTTTGTTTTGTCATAAAACA-ATTATTTCAGT-TCATACAAGCTTATTCA-A
* * * *
89033 AA-AGAATAAAACTAATTTATTAATATTTCAAAAATTCATAAGTAAGAGATTTAGAAAAT-AATT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT
* * *
89096 CTATTTACCGAA-CCAGTTCAAATAATTATAACTAT
66 -TATTTACTGAATCAAGTTCAAATAATTATGACTAT
89131 ATCAAATCAT
Statistics
Matches: 807, Mismatches: 169, Indels: 57
0.78 0.16 0.06
Matches are distributed among these distances:
175 5 0.01
176 1 0.00
177 126 0.16
178 8 0.01
179 3 0.00
180 104 0.13
181 184 0.23
182 221 0.27
183 41 0.05
184 65 0.08
185 49 0.06
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (182 bp):
AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT
TATTTACTGAATCAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATG
ACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAA
Found at i:88975 original size:181 final size:181
Alignment explanation
Indices: 87946--91495 Score: 1474
Period size: 181 Copynumber: 20.0 Consensus size: 181
87936 AAAAGGTCAT
* * * * * * *
87946 AATAAAATACTACTAATTTATTAATATTTCGAAACTTAATAACCAAGAAAATTAAAAAATAAATA
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* ** * * * * ** *
88011 TAATTGTTGAACCAGTTCAAATAGTTAAGACTCTATGAATGATTATCTATTTCAAATCGTTATGA
66 TATTTACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTATGA
* ** * * * **
88076 CATTTTCTTTTAACGTAAAACAATTGTTT-TGTTCATACAAGCTTATTTGG
131 CATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAG
* * ** *
88126 ATTAAAATAATACTAATTTAATAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAAAT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAAT-AAAT
* ** * * * *
88191 -TGTTTACTGAATC-AGTTCAAATGGTTAAAATTATTAGAATAATTATCTATTTCATAAAATTGT
65 CTATTTACTGAA-CAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTC---AAATTGT
* * * * * * * *
88254 TTTGATATTTTATTTGGTCATATAATAATTCTTTCAGTTTATACAAGCTTATTC-G
126 TATGACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAG
* * *
88309 AAATAAAATAATATTAATTTATTAACA-TTCAAAAAATTAATAAGC-AAGAGATTTGAAAAGATA
1 -AATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAA-CTAAGAGATTT-AAAAAATA
* * * * * *
88372 AATTTATTTACCGAACAAGTTTAATTAATTATGACTATTTGAACAATTATCTATTTAAAATCT-T
62 AATCTATTTACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAAT-TGT
* * * * * *
88436 TATGACATTTTGTTTTGTCATAAAATAATTATTTTAGTTCATAAAAGTTTATCCAA
126 TATGACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAG
* * *
88492 AATAAAATAATACTACTTTATTAATATTTCAAAAATTAATAAGTAAGATATTTTAAAAAATAAAT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGA-TTTAAAAAATAAAT
* * * ** * * * *
88557 CAATTTGCTAAATC-AGTTTGAATAATTATGGCCATTTGAACAACTATCTATTTCAAATTGTTAT
65 CTATTTACTGAA-CAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTAT
* * * * * *
88621 TACCTTGTGTTTTGTCATAAAACATTTATTTTTCA-AT-ATACAAGTTTATTC-G
129 GACATTTTGTTTTGTCATAAAACAATTA--TTTCAGTTCATACAAGCTTATTCAG
*
88673 AAATAAAATAATACTAATTTATTAATATTTCAAGAA-T--TAA-TAAGAGATTTAAAAAATAAAT
1 -AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAAT
* * * * *
88734 TTGTTTACTGAACCAA-TTCAAATAAATATGACTATTTGAACAATTATCTATTTCAAATTGTTTT
65 CTATTTACTGAA-CAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTAT
* * * * * *
88798 AACCTTTTGTTCTATCACAAAACAATTGTTTCAGTTCATACAAGCTTATTCAG
129 GACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAG
* * * **
88851 ATTAAAATAATACTAATTTAGTAAAATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* ** * * * * * * *
88916 TGTTTGTTGAATAAGTTGAAATAGTTAAGACTATATGAATAATGATTTATTTCAAATTGTTATGA
66 TATTTACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTATGA
*
88981 GC-TTTTGTTTTGTCATAAAA-ATATTATTTCA-TCTCATACAAGTTTATTCAGG
131 -CATTTTGTTTTGTCATAAAACA-ATTATTTCAGT-TCATACAAGCTTATTCA-G
* * * * * *
89033 AA-AGAATAAAACTAATTTATTAATATTTCAAAAATTCATAAGTAAGAGATTTAGAAAATAATTC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* * * * * **
89097 TATTTACCGAACCAGTTCAAATAATTATA-ACTATATCAA-ATCATTATGACCATTT-ATTTTGT
66 TATTTACTGAACAAGTTCAAATAATTA-AGACTATTTGAACA--ATTAT--CTATTTCAAATTGT
** * * * * *
89159 AATAAAACA-ATCGTTTCAAT-TCATACAGAC--TTA-TTCGAAGTAAAATAATACTAA-TTTAT
126 --TATGACATTTTGTTT---TGTCATA-AAACAATTATTTC--AGT----TCATAC-AAGCTTAT
* *
89218 TAAT
178 TCAG
* ** * ** * * * * * * ** *
89222 ATTCCAAGAATA--AATGAGAATAAGAATT-AAAAA-AAAGAA-TCAGTCA--CAAAAAA-AAAT
1 AATAAAATAATACTAAT-TTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAAT
* ** * * * * * ****
89279 CTTTTGTTA-TG-ATTA--TCTGAACAATT-A-TCTATTTCAAAACATTATGACCT-TTTTGTTT
65 C-TAT-TTACTGAACAAGTTC-AAATAATTAAGACTATTTGAACA-ATTAT---CTATTTCAAAT
* * * * * * * * * *
89337 TATCATAAAATAATTGGTTTTGGTCATGCAAGC--TTATTTC-G--AATA-AA-ATAATAT-A-
123 TGTTATGACAT--TTTGTTTT-GTCAT-AAAACAATTATTTCAGTTCATACAAGCTTAT-TCAG
** * * * * * * *
89392 AATTTATTAATA-T--TCTA-GAA-A-TT-AAAAAGTAAAAATTT-------T-AAAAATAAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* * * * * * *
89442 TGTTTTCTAAACATGTTCAAATAGTTATA-ATTATTTGAATAATTATCTATTTCAAATTGTTATG
66 TATTTACTGAACAAGTTCAAATAATTA-AGACTATTTGAACAATTATCTATTTCAAATTGTTATG
* * * * * * * **
89506 ACCTTTTGTTTTGTCATAAACCGATTGTTTCTGTTTATACAATCTTATTTGG
130 ACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAG
* * * *
89558 AATAAAATAATACTAATTTATT--TATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* *** ** * * * * *
89621 TGTTTAAC-GAGTGAGTTTGAATAGTTATGACTATTTGAATAATTATTTATTTCAAATTATTATG
66 TATTT-ACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTATG
* * * * ** *
89685 ATC-TTTGGTTTGGTCATAAAATAATTGTTTCTA-TTCATACAATTTTATTTAG
130 A-CATTTTGTTTTGTCATAAAACAATTATTTC-AGTTCATACAAGCTTATTCAG
* *
89737 AATAAAATAGTACTAATTTATTAATA-TT-ATAAAA-T--TAA-T--GAG--TT------GAAA-
1 AATAAAATAATACTAATTTATTAATATTTCA-AAAATTAATAACTAAGAGATTTAAAAAATAAAT
* * * * *
89785 --ATTTACTAAACAAGTTCAAATAGTTATGTCTATTTGAACTATTATCTATTTCAAATTGTTATG
65 CTATTTACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTATG
* * ** ** *
89848 ATATTTT-TTTTGTCATAAAATAATTATTTTTGTTCATACAAAATTATTTAG
130 ACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAG
* * *
89899 AATAAAATAATACTAATTTATTAATAGTTCCAAAA-T--TAA-TAAG-GTATTTAAAAACTAAAT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAG-ATTTAAAAAATAAAT
* * * * * * * * * *
89959 CTGTTTA-TCGATCTAGTTTTAAATAGTTATGAATATATGAATAATTATTTATTTCAAATTGTTA
65 CTATTTACT-GAACAAG-TTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTA
* * * * * * * * *
90023 TGACCTTTTGTTTTG-CTGTAAAACAAATGTTT-TGTTCATATAAGTTTGTTTAG
128 TGACATTTTGTTTTGTC-ATAAAACAATTATTTCAGTTCATACAAGCTTATTCAG
* * * ** * *
90076 AATATAATAATATTAATTGATTAATATTTTGAAAA-T--CAA-TAAGAGATTTGAAAAATAAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* ** * * * * * * * **
90137 TATTAACCAAACTAGTTTAATTACTTATA-A-TAATTTGAATAATTATTTGTTTCAAATCATTAT
66 TATTTACTGAACAAGTTCAAATAATTA-AGACT-ATTTGAACAATTATCTATTTCAAATTGTTAT
* * * * *
90200 GATC-GTTTGTTTTGTCATAAAACAATTGTTTCTA-TTGATA-TAGTCTTATTTAG
129 GA-CATTTTGTTTTGTCATAAAACAATTATTTC-AGTTCATACAAG-CTTATTCAG
* * *** *
90253 AATAAAATAATGCCAATTTATTAATA-TTCTAAAAATTAATGTGTAATG-GATTTAAAAAATGAA
1 AATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAACTAA-GAGATTTAAAAAATAAA
* ** * * * * * * * * *
90316 T-TGGTTGGCCT-AACCAGTGCAAATAGTTATGACTGTTTGAATAATGATCTATTTTAAATTATT
64 TCT-ATT-TACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTT
* * * * * ** *
90379 ATAACTTTTTATTTTGTCACAAAAAAATTATTTTTGTTCATACAAGCTTACT-AGG
127 ATGACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCA-G
* ** * * * * * *
90434 AATAACATAATTTTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTCAAAAACTGAATA
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* * * * * * * * * *
90499 TGTTTATTAAATAAGTTC--A-AA-T-AG-TTATTTCAACAATTACCTATATCAAATTGCTATAA
66 TATTTACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTATGA
* * * *
90558 CCTTTTATTTTGTCATAAAATAATTTTTTCTA-TTCATACAAGCTTATTTCA-
131 CATTTTGTTTTGTCATAAAACAATTATTTC-AGTTCATACAAGCTTA-TTCAG
* * * * * *
90609 ATTAAAATAATA-AAAATTATTAATA-TTCAGAAAATTAATAAGTAAAAGATTTAAAAAATAACT
1 AATAAAATAATACTAATTTATTAATATTTCA-AAAATTAATAACTAAGAGATTTAAAAAATAAAT
* ** * * * * * * * *
90672 TTGA-TTACCAAATAAGTTCTAATCATTATGACTATTTGAATAGTTGTTTATTTCAAATTGTTAT
65 CT-ATTTACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTAT
* * *
90736 AAC-TTTT-TTTGGTCATAAAACAATTATTTTCA-TTCATACAAAGCTTATT-TG
129 GACATTTTGTTTTGTCATAAAACAATTA-TTTCAGTTCATAC-AAGCTTATTCAG
* * * * * * *
90787 -GT---TTAA-ACTAA--TATT-A-ATTT-----ATTAATAAGTAAAAAATTTTAAAAATAAATA
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* * * * * *
90838 TGTTTACTGAATAAGTTCAAATAGTTATA-ACTATTTGAATAATTATCTATTTCAAATTGCTATA
66 TATTTACTGAACAAGTTCAAATAATTA-AGACTATTTGAACAATTATCTATTTCAAATTGTTATG
* ** * * * * *
90902 ACCTTTTGTTTCATCATAAAACAATTGTATCAGTTCATATAGGCTTATT-TG
130 ACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAG
* * *
90953 AAATAAAATAATACTAATTTATCAATATTTCAAAAATTAATGAGTAAGAGATTTAAAAAATAAAT
1 -AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAAT
* * * * * * * * **
91018 ATATTTATTGAACAAATTTAAATAGTTATGACTATTTGAACAATT-TTTCAGTTCAAATCATTAT
65 CTATTTACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCT-ATTTCAAATTGTTAT
** * * * *
91082 GACATTTTGTTTTGTTGTAAAATAATTGTTTCTGTTCATAGAAGCTTATTCCA-
129 GACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATT-CAG
* * * *
91135 AATAAAATAATA-TAAATTTATTAAT-TTTCAAAAAATTAACAAGTAA-AAATTT-TAAAATAAA
1 AATAAAATAATACT-AATTTATTAATATTTC-AAAAATTAATAACTAAGAGATTTAAAAAATAAA
* * * * *
91196 TCTATTTTCTGAACACGTTCAAATAATTATA-ACTATTTGAATAATTATCAATTTCAAATAGTTA
64 TCTATTTACTGAACAAGTTCAAATAATTA-AGACTATTTGAACAATTATCTATTTCAAATTGTTA
* * * * * * * * *
91260 TGACATTTTGTTTTGTTATAAACCAATTGTTTCTGTTCATTCAACCGTAATCAA
128 TGACATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAG
* * * * * * * * * *
91314 AATAAAAAAATACTAGTTCATTCATATTCCAAAAATTAGTAA-GAAAATATTTAAAAAATAAATT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* * * * * * *
91378 TATTTACTGAGCAAGTTCAAATAGTTATGACAATTTGAACAATTATTTATTTCAAATAGCTATGA
66 TATTTACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTATGA
* *
91443 TC-TTTTGTTTTGTCATAAAACAATTATTTCTA-TTCATACAAGTTTATTTAG
131 -CATTTTGTTTTGTCATAAAACAATTATTTC-AGTTCATACAAGCTTATTCAG
91494 AA
1 AA
91496 ATATTCTAAA
Statistics
Matches: 2568, Mismatches: 587, Indels: 430
0.72 0.16 0.12
Matches are distributed among these distances:
158 3 0.00
159 5 0.00
160 15 0.01
161 11 0.00
162 80 0.03
163 71 0.03
164 11 0.00
165 100 0.04
166 35 0.01
167 28 0.01
168 2 0.00
169 5 0.00
170 9 0.00
171 23 0.01
172 12 0.00
173 11 0.00
174 63 0.02
175 81 0.03
176 83 0.03
177 296 0.12
178 60 0.02
179 280 0.11
180 275 0.11
181 517 0.20
182 245 0.10
183 53 0.02
184 88 0.03
185 54 0.02
186 10 0.00
187 7 0.00
188 8 0.00
189 8 0.00
190 17 0.01
191 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (181 bp):
AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATC
TATTTACTGAACAAGTTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTATGA
CATTTTGTTTTGTCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAG
Found at i:89677 original size:179 final size:179
Alignment explanation
Indices: 89284--89764 Score: 547
Period size: 179 Copynumber: 2.7 Consensus size: 179
89274 AAAATCTTTT
* * ** *
89284 GTTATGATTATCTGAACAATTATCTATTTCAAAACATTATGACCTTTTTGTTTTATCATAAAATA
1 GTTATGATTATTTGAATAATTATCTATTTCAAATTATTATGACC-TTTTGTTTTGTCATAAAATA
* * * * * *
89349 ATTGGTTT-TGGTCATGCAAGCTTATTTCGAATAAAATAATA-TAAATTTATTAATATTCTAGAA
65 ATT-GTTTCTGTTCATACAATCTTATTTAGAATAAAATAATACT-AATTTATT-ATATTCCAAAA
* * *
89412 ATTAAAAAGTAAAAATTTTAAAAATAAATCTGTTTTCTAAACATGTTCAAATA
127 ATTAAAAAGTAAAAATTTAAAAAATAAATCTGTTTACGAAACATGTTCAAATA
* * ***
89465 GTTATAATTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAACCGA
1 GTTATGATTATTTGAATAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGTCATAAAATAA
* *
89530 TTGTTTCTGTTTATACAATCTTATTTGGAATAAAATAATACTAATTTATT-TATTCCAAAAATTA
66 TTGTTTCTGTTCATACAATCTTATTTAGAATAAAATAATACTAATTTATTATATTCCAAAAATTA
* * *** **
89594 ATAAGTAAAAGATTTAAAAAATAAATTTGTTTAACGAGTGA-GTTTGAATA
131 AAAAGTAAAA-ATTTAAAAAATAAATCTGTTT-ACGAAACATGTTCAAATA
* * * * *
89644 GTTATGACTATTTGAATAATTATTTATTTCAAATTATTATGATCTTTGGTTTGGTCATAAAATAA
1 GTTATGATTATTTGAATAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGTCATAAAATAA
* * *
89709 TTGTTTCTATTCATACAATTTTATTTAGAATAAAATAGTACTAATTTATTAATATT
66 TTGTTTCTGTTCATACAATCTTATTTAGAATAAAATAATACTAATTTATT-ATATT
89765 ATAAAATTAA
Statistics
Matches: 252, Mismatches: 42, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
178 21 0.08
179 130 0.52
180 58 0.23
181 43 0.17
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (179 bp):
GTTATGATTATTTGAATAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGTCATAAAATAA
TTGTTTCTGTTCATACAATCTTATTTAGAATAAAATAATACTAATTTATTATATTCCAAAAATTA
AAAAGTAAAAATTTAAAAAATAAATCTGTTTACGAAACATGTTCAAATA
Found at i:89879 original size:20 final size:20
Alignment explanation
Indices: 89854--89896 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
89844 TATGATATTT
89854 TTTTTG-TCATAAAATAATTA
1 TTTTTGTTCATAAAA-AATTA
*
89874 TTTTTGTTCATACAAAATTA
1 TTTTTGTTCATAAAAAATTA
89894 TTT
1 TTT
89897 AGAATAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (20 bp):
TTTTTGTTCATAAAAAATTA
Found at i:89915 original size:162 final size:164
Alignment explanation
Indices: 89640--89938 Score: 442
Period size: 162 Copynumber: 1.8 Consensus size: 164
89630 AGTGAGTTTG
* *
89640 AATAGTTATGACTATTTGAATAATTATTTATTTCAAATTATTATGATCTTTGGTTTGGTCATAAA
1 AATAGTTATGACTATTTGAATAATTATCTATTTCAAATTATTATGATATTTGGTTTGGTCATAAA
* ** * *
89705 ATAATTGTTTCTATTCATACAATTTTATTTAGAATAAAATAGTACTAATTTATTAATA-TTATAA
66 ATAATTATTTCTATTCATACAAAATTATTTAGAATAAAATAATACTAATTTATTAATAGTTACAA
89769 AATTAATGAGTTGAAAATTTACTAAACAAGTTCA
131 AATTAATGAGTTGAAAATTTACTAAACAAGTTCA
* * * *
89803 AATAGTTATGTCTATTTGAACT-ATTATCTATTTCAAATTGTTATGATATTT-TTTTTGTCATAA
1 AATAGTTATGACTATTTGAA-TAATTATCTATTTCAAATTATTATGATATTTGGTTTGGTCATAA
* * *
89866 AATAATTATTTTTGTTCATACAAAATTATTTAGAATAAAATAATACTAATTTATTAATAGTTCCA
65 AATAATTATTTCTATTCATACAAAATTATTTAGAATAAAATAATACTAATTTATTAATAGTTACA
89931 AAATTAAT
130 AAATTAAT
89939 AAGGTATTTA
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
162 63 0.52
163 56 0.47
164 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.45
Consensus pattern (164 bp):
AATAGTTATGACTATTTGAATAATTATCTATTTCAAATTATTATGATATTTGGTTTGGTCATAAA
ATAATTATTTCTATTCATACAAAATTATTTAGAATAAAATAATACTAATTTATTAATAGTTACAA
AATTAATGAGTTGAAAATTTACTAAACAAGTTCA
Found at i:91610 original size:160 final size:159
Alignment explanation
Indices: 91337--91639 Score: 394
Period size: 160 Copynumber: 1.9 Consensus size: 159
91327 TAGTTCATTC
* * * * *
91337 ATATTCCAAAAATTAGTAAGAAAATATTTAAAAAATAAATTTATTTACTGAGCAAGTTCAAATAG
1 ATATTCCAAAAATTAATAAGAAAAGATTTAAAAAACAAATCTATTTACTGAACAAGTTCAAATAG
* * * *
91402 TTATGACAATTTGAACAATTATTTATTTCAAATAGCTATGATCTTTTGTTTTGTCATAAAACAAT
66 TCATGACAATTTGAACAATTATTTACTTCAAATAGCTATGACCTTTTGTTTTATCATAAAACAAT
*
91467 TATTTCTATTCATACAAGTTTATTTAGAA
131 TATTACTATTCATACAAGTTTATTTAGAA
* * *
91496 ATATTCTAAAAATTAAT-AGATAAAGGATTTAAAAAACAAATCTGTTTATTGAACAAGTTCAAAT
1 ATATTCCAAAAATTAATAAGA-AAA-GATTTAAAAAACAAATCTATTTACTGAACAAGTTCAAAT
* * * * * *
91560 AGTCATGTCCATTTGAACAATTATCTT-CTTCAAATTGTTATGACCTTTTGTTTTATCGTAAAAT
64 AGTCATGACAATTTGAACAATTAT-TTACTTCAAATAGCTATGACCTTTTGTTTTATCATAAAAC
91624 AATTATTACTATTCAT
128 AATTATTACTATTCAT
91640 GCAAAATTAT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
158 3 0.02
159 18 0.15
160 99 0.81
161 2 0.02
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (159 bp):
ATATTCCAAAAATTAATAAGAAAAGATTTAAAAAACAAATCTATTTACTGAACAAGTTCAAATAG
TCATGACAATTTGAACAATTATTTACTTCAAATAGCTATGACCTTTTGTTTTATCATAAAACAAT
TATTACTATTCATACAAGTTTATTTAGAA
Found at i:92632 original size:101 final size:101
Alignment explanation
Indices: 92498--92682 Score: 230
Period size: 101 Copynumber: 1.8 Consensus size: 101
92488 TAAATCGTTT
* * * *
92498 TGACCTTTTGTTTAGCTATATAATAGTTGTTTCAATTCATAAAAGCT-TATTCAAAATAAAATAA
1 TGACCTTTTGTTTAGCTATAAAATAATTATTTCAACTCATAAAAG-TGTATTCAAAATAAAATAA
* *
92562 TATTAATTTATTAACATTTATTTATTTCAATTTGTTA
65 AACTAATTTATTAACATTTATTTATTTCAATTTGTTA
* * * * *
92599 TGACCTTTTGTTTTG-TCATAAAATAATTATTTCAGCTCATACAAGTGTATTCGAAATAGAATAA
1 TGACCTTTTGTTTAGCT-ATAAAATAATTATTTCAACTCATAAAAGTGTATTCAAAATAAAATAA
*
92663 AACTAATTTATTAATATTTA
65 AACTAATTTATTAACATTTA
92683 AAAAATTTAT
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
100 2 0.03
101 68 0.97
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (101 bp):
TGACCTTTTGTTTAGCTATAAAATAATTATTTCAACTCATAAAAGTGTATTCAAAATAAAATAAA
ACTAATTTATTAACATTTATTTATTTCAATTTGTTA
Found at i:93227 original size:23 final size:22
Alignment explanation
Indices: 93201--93244 Score: 79
Period size: 23 Copynumber: 2.0 Consensus size: 22
93191 TTGAATAAAT
93201 TATTAATATTATTAATAATATTA
1 TATTAATATTATTAAT-ATATTA
93224 TATTAATATTATTAATATATT
1 TATTAATATTATTAATATATT
93245 TAATAATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTAATATTATTAATATATTA
Found at i:94389 original size:24 final size:24
Alignment explanation
Indices: 94362--94451 Score: 78
Period size: 23 Copynumber: 3.7 Consensus size: 24
94352 AATTTATTAT
*
94362 ATTAATATTTATAATATTCTAATA
1 ATTAATATTTATAATATTATAATA
* *
94386 ATTAATA-TTATTATAATATAATA
1 ATTAATATTTATAATATTATAATA
94409 ATTATAATATTTTATAATATTAGTAAT-
1 A-T-TAATA-TTTATAATATTA-TAATA
* *
94436 TTTAATATATA-AATAT
1 ATTAATATTTATAATAT
94452 AGTTTCTATT
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
23 19 0.35
24 11 0.20
25 10 0.19
26 1 0.02
27 9 0.17
28 4 0.07
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (24 bp):
ATTAATATTTATAATATTATAATA
Found at i:94391 original size:15 final size:16
Alignment explanation
Indices: 94371--94417 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
94361 TATTAATATT
*
94371 TATAATATTCTAATAA
1 TATAATATTATAATAA
*
94387 T-TAATATTATTATAA
1 TATAATATTATAATAA
94402 TATAATAATTATAATA
1 TATAAT-ATTATAATA
94418 TTTTATAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 13 0.50
16 5 0.19
17 8 0.31
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAATATTATAATAA
Found at i:94430 original size:32 final size:32
Alignment explanation
Indices: 94371--94435 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
94361 TATTAATATT
* *
94371 TATAATATTCTAATAATTAATATTATTA-TAA
1 TATAATATTATAATAATTAATAATATTAGTAA
* *
94402 TATAATAATTATAATATTTTATAATATTAGTAA
1 TATAAT-ATTATAATAATTAATAATATTAGTAA
94435 T
1 T
94436 TTTAATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 6 0.21
32 18 0.64
33 4 0.14
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (32 bp):
TATAATATTATAATAATTAATAATATTAGTAA
Found at i:94757 original size:25 final size:23
Alignment explanation
Indices: 94728--94773 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 23
94718 TCAATAGTTA
94728 TAATAATAA-TATTATATAACAATAT
1 TAAT-ATAACTATTA-A-AACAATAT
94753 TAATATAACTATTAAAACAAT
1 TAATATAACTATTAAAACAAT
94774 TGATAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 6 0.30
24 5 0.25
25 9 0.45
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (23 bp):
TAATATAACTATTAAAACAATAT
Found at i:94808 original size:24 final size:24
Alignment explanation
Indices: 94776--94827 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
94766 AAAACAATTG
94776 ATAAAATTATTAAAT-ATTATAAAT
1 ATAAAATTA-TAAATAATTATAAAT
* * *
94800 ATAATATTATAATTAATTATAATT
1 ATAAAATTATAAATAATTATAAAT
94824 ATAA
1 ATAA
94828 CTTATTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
ATAAAATTATAAATAATTATAAAT
Found at i:94825 original size:30 final size:31
Alignment explanation
Indices: 94791--94921 Score: 80
Period size: 30 Copynumber: 4.3 Consensus size: 31
94781 ATTATTAAAT
94791 ATTATAAATATAATATTATAATTA-ATTATA
1 ATTATAAATATAATATTATAATTATATTATA
*
94821 ATTATAACT-T-AT-TTATAAGTTAATATTATA
1 ATTATAAATATAATATTATAA-TT-ATATTATA
* **
94851 AATATTAGTTATAATATT-TAATTATATTA-A
1 ATTA-TAAATATAATATTATAATTATATTATA
* * *
94881 TTTATTAATA-ATTATATATAA-TATAATTTATA
1 ATTATAAATATAATAT-TATAATTAT-A-TTATA
94913 TATTATAAA
1 -ATTATAAA
94922 ACAATTGTTA
Statistics
Matches: 76, Mismatches: 12, Indels: 23
0.68 0.11 0.21
Matches are distributed among these distances:
27 6 0.08
28 8 0.11
29 9 0.12
30 24 0.32
31 12 0.16
32 4 0.05
33 11 0.14
34 2 0.03
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (31 bp):
ATTATAAATATAATATTATAATTATATTATA
Found at i:94914 original size:14 final size:15
Alignment explanation
Indices: 94888--94920 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
94878 TAATTTATTA
94888 ATAATTATATATAAT
1 ATAATTATATATAAT
*
94903 ATAATT-TATATATT
1 ATAATTATATATAAT
94917 ATAA
1 ATAA
94921 AACAATTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAATTATATATAAT
Found at i:95592 original size:180 final size:176
Alignment explanation
Indices: 95084--95594 Score: 453
Period size: 180 Copynumber: 2.8 Consensus size: 176
95074 TTTATATTGC
* * * * * * * *
95084 ATTTGGAATAAACTTGTATGAATAGAAACAATTTTTTTATGACAAAACAAAACA-TTATAATGAT
1 ATTTGG-ATAAGCTTGTATGAACAAAAACAATTGTTTTATG-GAAAAGAAAAAAGTCATAATGAT
* * *
95148 TTGAAATAGAAAATTGTTCAAATAGTCATAACTATTTGAACTTTTTTGATAAATAAATTCATTTT
64 TTGAAATA-AAAATTATTCAAATAGTCATAACTATTTGAAC-TTTTTGGTAAACAAATT-ATTTT
* * * ** *
95213 TTAAATCTCTTACTCATTAATTTTTGAAATATTAATAAATTAGTATCATTTT
126 TAAAATCT-TTACTTATTAATTGTCAAAATATTAATAAATTAATATCATTTT
** * * ** * * *
95265 ATTTCAAATAAGCCTATATGAACTTATACAATTGTTTTAT-G--ATGAAACAATTGGTCATAACT
1 ATTT-GGATAAGCTTGTATGAACAAAAACAATTGTTTTATGGAAAAGAAA-AA--AGTCATAA-T
* * * ** *
95327 -ATTTGAAATAAAAAAATATTCAAATAGTTA-AGAGTATTTGAACTTTCTCAGTAAACATATATA
61 GATTTGAAAT-AAAAATTATTCAAATAGTCATA-ACTATTTGAACTTT-TTGGTAAACAAAT-TA
* *
95390 TTTTTAAAATTTTTTA-TTATTAATTGTCAAAATATTAATAAATTAATATTATTTT
122 TTTTTAAAA-TCTTTACTTATTAATTGTCAAAATATTAATAAATTAATATCATTTT
95445 AATTTGGATAAGCTTGTATGAACAAAAACAATTGTTTTATGGAAAAGAAAAAAGTCATAATGATT
1 -ATTTGGATAAGCTTGTATGAACAAAAACAATTGTTTTATGGAAAAGAAAAAAGTCATAATGATT
*
95510 TAAAATAAATAATTATTCAAATAGTCATAACTA-TTGAACTTATTTGGTAAACAAAGTTATTTTT
65 TGAAATAAA-AATTATTCAAATAGTCATAACTATTTGAACTT-TTTGGTAAACAAA-TTATTTTT
*
95574 AAAATCTTAAACTTATTAATT
127 AAAATCTT-TACTTATTAATT
95595 TAATAATTAA
Statistics
Matches: 257, Mismatches: 51, Indels: 45
0.73 0.14 0.13
Matches are distributed among these distances:
177 4 0.02
178 4 0.02
179 33 0.13
180 109 0.42
181 95 0.37
182 7 0.03
183 5 0.02
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.41
Consensus pattern (176 bp):
ATTTGGATAAGCTTGTATGAACAAAAACAATTGTTTTATGGAAAAGAAAAAAGTCATAATGATTT
GAAATAAAAATTATTCAAATAGTCATAACTATTTGAACTTTTTGGTAAACAAATTATTTTTAAAA
TCTTTACTTATTAATTGTCAAAATATTAATAAATTAATATCATTTT
Found at i:95853 original size:18 final size:20
Alignment explanation
Indices: 95808--95853 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
95798 TTTATTTATT
*
95808 TAATTAATAGTATTAACTAAA
1 TAATT-ATAATATTAACTAAA
*
95829 TATTTATAATATTAA-T-AA
1 TAATTATAATATTAACTAAA
95847 TAATTAT
1 TAATTAT
95854 TGTTTATCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 8 0.36
19 1 0.05
20 9 0.41
21 4 0.18
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (20 bp):
TAATTATAATATTAACTAAA
Found at i:95884 original size:19 final size:18
Alignment explanation
Indices: 95856--95892 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
95846 ATAATTATTG
*
95856 TTTATCTTATATAACTATA
1 TTTATATTATAT-ACTATA
95875 TTTATATTATATACTATA
1 TTTATATTATATACTATA
95893 ATAATATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTATATTATATACTATA
Found at i:95899 original size:18 final size:19
Alignment explanation
Indices: 95862--95901 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
95852 ATTGTTTATC
* *
95862 TTATATAACTATATTTATA
1 TTATATAACTATAATAATA
95881 TTATAT-ACTATAATAATA
1 TTATATAACTATAATAATA
95899 TTA
1 TTA
95902 CTAAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
TTATATAACTATAATAATA
Found at i:96044 original size:21 final size:21
Alignment explanation
Indices: 96003--96078 Score: 61
Period size: 21 Copynumber: 3.7 Consensus size: 21
95993 AGTCAAAAAC
* *
96003 TTATAA-TTACAATTATCATAA
1 TTATAATTTATAA-TATAATAA
96024 TTATAATTTATAATATAATAA
1 TTATAATTTATAATATAATAA
*
96045 -TA-AATTATATAA-ATTAATTA
1 TTATAATT-TATAATA-TAATAA
*
96065 TTATTATTTATAAT
1 TTATAATTTATAAT
96079 TATTAAACGA
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
19 5 0.11
20 12 0.27
21 20 0.44
22 8 0.18
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (21 bp):
TTATAATTTATAATATAATAA
Found at i:97300 original size:28 final size:29
Alignment explanation
Indices: 97233--97303 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 29
97223 TTAATATCAA
*
97233 ATTATTTATATT-TTTATAAAATAATAATT
1 ATTATTTA-ATTATTTATAAAATAATAAAT
* * * *
97262 AATATATAATTATTTGTAACATAA-AAAT
1 ATTATTTAATTATTTATAAAATAATAAAT
97290 ATTATTTAATTATT
1 ATTATTTAATTATT
97304 ATATGTTATA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
28 18 0.53
29 16 0.47
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (29 bp):
ATTATTTAATTATTTATAAAATAATAAAT
Found at i:97739 original size:10 final size:10
Alignment explanation
Indices: 97724--97760 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
97714 CTATATAAAT
97724 ATTAATAATA
1 ATTAATAATA
*
97734 ACTAATAATCA
1 ATTAATAAT-A
97745 ATTAATAATA
1 ATTAATAATA
97755 ATTAAT
1 ATTAAT
97761 TAACCATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (10 bp):
ATTAATAATA
Found at i:98032 original size:61 final size:61
Alignment explanation
Indices: 97956--98086 Score: 253
Period size: 61 Copynumber: 2.1 Consensus size: 61
97946 ATTGATAGGT
97956 ATAATTTAATATAATGAAATTATATTTATTAATTTAATAATTCACAATAATTTCAAATTATA
1 ATAATTT-ATATAATGAAATTATATTTATTAATTTAATAATTCACAATAATTTCAAATTATA
98018 ATAATTTATATAATGAAATTATATTTATTAATTTAATAATTCACAATAATTTCAAATTATA
1 ATAATTTATATAATGAAATTATATTTATTAATTTAATAATTCACAATAATTTCAAATTATA
98079 ATAATTTA
1 ATAATTTA
98087 AGTCTTAATT
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
61 62 0.90
62 7 0.10
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.46
Consensus pattern (61 bp):
ATAATTTATATAATGAAATTATATTTATTAATTTAATAATTCACAATAATTTCAAATTATA
Found at i:98054 original size:23 final size:23
Alignment explanation
Indices: 98010--98054 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
98000 CAATAATTTC
*
98010 AAATTATAATAATTTATATAATG
1 AAATTATAATAATTAATATAATG
* * *
98033 AAATTATATTTATTAATTTAAT
1 AAATTATAATAATTAATATAAT
98055 AATTCACAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
AAATTATAATAATTAATATAATG
Found at i:98685 original size:20 final size:19
Alignment explanation
Indices: 98660--98702 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
98650 ATAATAGATA
98660 AATATTAA-TTATTTAATATT
1 AATATTAATTTA-TT-ATATT
98680 AATATTAATTTATTATATT
1 AATATTAATTTATTATATT
98699 AATA
1 AATA
98703 AGTTTGTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.41
20 10 0.45
21 3 0.14
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
AATATTAATTTATTATATT
Found at i:98970 original size:20 final size:20
Alignment explanation
Indices: 98945--98983 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
98935 TTCAAATTAA
98945 TAATTTTATAA-ATATAATAT
1 TAATTTTA-AACATATAATAT
98965 TAATTTTAAACATATAATA
1 TAATTTTAAACATATAATA
98984 ATAAGAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
TAATTTTAAACATATAATAT
Found at i:99058 original size:9 final size:9
Alignment explanation
Indices: 99001--99065 Score: 62
Period size: 9 Copynumber: 7.0 Consensus size: 9
98991 ATATACAGTT
99001 TAATTATAA
1 TAATTATAA
99010 TAATTGATAA
1 TAATT-ATAA
99020 T-ATT-TAA
1 TAATTATAA
*
99027 TTATTATAA
1 TAATTATAA
99036 TTAATTAAATAA
1 -TAATT--ATAA
99048 TAATTATAA
1 TAATTATAA
*
99057 TAAATATAA
1 TAATTATAA
99066 CTATATTGCT
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
7 4 0.08
8 3 0.06
9 23 0.48
10 9 0.19
11 5 0.10
12 4 0.08
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (9 bp):
TAATTATAA
Found at i:99522 original size:26 final size:26
Alignment explanation
Indices: 99482--99547 Score: 62
Period size: 28 Copynumber: 2.3 Consensus size: 26
99472 ATTATATCAA
*
99482 TATTAAATATAATATATATTATATATTATT
1 TATTATATATAA-ATA-A-TATATA-TATT
99512 TATT-TATATATAAATAATATATATATT
1 TATTATAT--ATAAATAATATATATATT
99539 TATTATATA
1 TATTATATA
99548 AATTACATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
26 1 0.03
27 8 0.25
28 9 0.28
29 3 0.09
30 7 0.22
31 4 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
TATTATATATAAATAATATATATATT
Found at i:99712 original size:18 final size:18
Alignment explanation
Indices: 99673--99706 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
99663 TATGAATTAC
*
99673 ATATAATATAGTTTATAA
1 ATATAATATAGTTTACAA
99691 ATATAATATA-TTTACA
1 ATATAATATAGTTTACA
99707 TTATATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
ATATAATATAGTTTACAA
Found at i:100260 original size:22 final size:22
Alignment explanation
Indices: 100235--100280 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
100225 TATAATCAGT
* *
100235 TTTAATTTATTTAATAATATTA
1 TTTAAATTATTGAATAATATTA
*
100257 TTTAAATTATTGATTAATATTA
1 TTTAAATTATTGAATAATATTA
100279 TT
1 TT
100281 AATAATAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTAAATTATTGAATAATATTA
Found at i:101762 original size:20 final size:18
Alignment explanation
Indices: 101729--101768 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
101719 TTAAATATTT
*
101729 TTTAATAATTAATACTAA
1 TTTAATAATTAATAATAA
101747 TTTACATAATTTAATAATAA
1 TTTA-ATAA-TTAATAATAA
101767 TT
1 TT
101769 ATATATTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 4 0.21
20 11 0.58
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTAATAATTAATAATAA
Found at i:102019 original size:16 final size:16
Alignment explanation
Indices: 101984--102021 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
101974 ATATAAAATA
*
101984 ATTA-ATTATTATAAT
1 ATTATATTATTATAAC
*
101999 GTTATATTATTATAAC
1 ATTATATTATTATAAC
102015 ATTATAT
1 ATTATAT
102022 AAATATCCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (16 bp):
ATTATATTATTATAAC
Found at i:102077 original size:20 final size:21
Alignment explanation
Indices: 102035--102115 Score: 69
Period size: 20 Copynumber: 3.9 Consensus size: 21
102025 TATCCAATAT
* *
102035 TTAATTTA-TATAAAATTATAA
1 TTAAATTATTATAATATTA-AA
*
102056 TTATATTATTATAAT-TTAAA
1 TTAAATTATTATAATATTAAA
* *
102076 TTAAATTA-TATAGTATTAAT
1 TTAAATTATTATAATATTAAA
*
102096 TTAAATTATTAATATTATTA
1 TTAAATTATT-ATAATATTA
102116 GTTAATATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.10
20 21 0.43
21 10 0.20
22 13 0.27
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (21 bp):
TTAAATTATTATAATATTAAA
Found at i:102095 original size:25 final size:26
Alignment explanation
Indices: 102047--102186 Score: 93
Period size: 26 Copynumber: 5.6 Consensus size: 26
102037 AATTTATATA
*
102047 AAATTATAATTATATTATTATAATTT
1 AAATTATAATTATATTAGTATAATTT
102073 AAATTA-AATTATA-TAGTATTAATTT
1 AAATTATAATTATATTAGTA-TAATTT
*
102098 AAATTATTAA-TATTATTAGT-TAATAT
1 AAATTA-TAATTA-TATTAGTATAATTT
*
102124 AAA-TATTA-TATATTA-TA-ATATTT
1 AAATTATAATTATATTAGTATA-ATTT
* * * *
102147 AAACATATATTTATAATA-TATAAATT
1 AAA-TTATAATTATATTAGTATAATTT
*
102173 AAAATATAA-TATAT
1 AAATTATAATTATAT
102187 CTATATACTA
Statistics
Matches: 93, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
22 2 0.02
23 11 0.12
24 12 0.13
25 29 0.31
26 30 0.32
27 5 0.05
28 4 0.04
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (26 bp):
AAATTATAATTATATTAGTATAATTT
Found at i:102144 original size:21 final size:21
Alignment explanation
Indices: 102106--102166 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
102096 TTAAATTATT
*
102106 AATATTAT-TAGT-TAATATA
1 AATATTATATATTATAATATA
102125 AATATTATATATTATAATATTTA
1 AATATTATATATTATAATA--TA
*
102148 AACA-TATAT-TTATAATATA
1 AATATTATATATTATAATATA
102167 TAAATTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
19 10 0.28
20 3 0.08
21 13 0.36
22 5 0.14
23 5 0.14
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
AATATTATATATTATAATATA
Found at i:102170 original size:21 final size:23
Alignment explanation
Indices: 102120--102170 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 23
102110 TTATTAGTTA
*
102120 ATATAAATATTATATATTATAAT
1 ATATAAACATTATATATTATAAT
*
102143 ATTTAAACA-TATAT-TTATAAT
1 ATATAAACATTATATATTATAAT
102164 ATATAAA
1 ATATAAA
102171 TTAAAATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 13 0.52
22 5 0.20
23 7 0.28
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
ATATAAACATTATATATTATAAT
Found at i:102948 original size:20 final size:20
Alignment explanation
Indices: 102912--102949 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
102902 TCATAAATAA
* *
102912 TAATAATTATTATTTTATGT
1 TAATAATTAATAATTTATGT
102932 TAATAATTAATAATTTAT
1 TAATAATTAATAATTTAT
102950 AAAATAAGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
TAATAATTAATAATTTATGT
Found at i:103432 original size:13 final size:13
Alignment explanation
Indices: 103414--103448 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
103404 TATCAAGACT
103414 TAATATTAATTAG
1 TAATATTAATTAG
103427 TAATATTAA-TAG
1 TAATATTAATTAG
103439 T-ATATTAATT
1 TAATATTAATT
103449 CAAATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 5 0.24
13 9 0.43
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (13 bp):
TAATATTAATTAG
Found at i:103586 original size:18 final size:18
Alignment explanation
Indices: 103563--103615 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
103553 TTTTAACATA
103563 ATATAAAATTATTATAAT
1 ATATAAAATTATTATAAT
** *
103581 ATATAACGTTATAATAAT
1 ATATAAAATTATTATAAT
*
103599 ATATCATAATT-TTATAA
1 ATAT-AAAATTATTATAA
103616 AATAACTTAA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
18 24 0.89
19 3 0.11
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATAAAATTATTATAAT
Found at i:103721 original size:20 final size:19
Alignment explanation
Indices: 103682--103733 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 19
103672 TATTGTTTAG
103682 TATATAATTAT-AATAATAT
1 TATAT-ATTATAAATAATAT
103701 TATATATTATAAATCAATAT
1 TATATATTATAAAT-AATAT
103721 TATATA-TATAAAT
1 TATATATTATAAAT
103734 TATTAATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.16
19 15 0.48
20 11 0.35
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (19 bp):
TATATATTATAAATAATAT
Found at i:103780 original size:27 final size:28
Alignment explanation
Indices: 103723--103778 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
103713 ATCAATATTA
103723 TATATATAAATTATTAATATAATAATTT
1 TATATATAAATTATTAATATAATAATTT
103751 TATAT-TAAATTATTTTAAT-TAATAATTT
1 TATATATAAATTA--TTAATATAATAATTT
103779 ATTTTATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 7 0.27
28 14 0.54
29 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
TATATATAAATTATTAATATAATAATTT
Found at i:103838 original size:17 final size:17
Alignment explanation
Indices: 103816--103871 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 17
103806 TATCTAATAA
103816 ATTAATTAAAATTAATT
1 ATTAATTAAAATTAATT
* *
103833 ATTAATATTAAA-TAAGT
1 ATTAAT-TAAAATTAATT
103850 ATTAATTATAATATATAATT
1 ATTAATTA-AA-AT-TAATT
103870 AT
1 AT
103872 ATATATATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
16 1 0.03
17 18 0.60
18 5 0.17
20 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
ATTAATTAAAATTAATT
Found at i:103842 original size:13 final size:13
Alignment explanation
Indices: 103815--103871 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
103805 ATATCTAATA
*
103815 AATTAATTAAAATT
1 AATT-ATTAATATT
103829 AATTATTAATATT
1 AATTATTAATATT
103842 AA--A-TAAGTATT
1 AATTATTAA-TATT
103853 AATTA-TAATATAT
1 AATTATTAATAT-T
103866 AATTAT
1 AATTAT
103872 ATATATATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
10 3 0.08
11 7 0.19
12 3 0.08
13 20 0.54
14 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (13 bp):
AATTATTAATATT
Found at i:103879 original size:14 final size:13
Alignment explanation
Indices: 103828--103883 Score: 57
Period size: 13 Copynumber: 4.4 Consensus size: 13
103818 TAATTAAAAT
103828 TAATTATTAATAT-
1 TAATTA-TAATATA
103841 TAA--ATAAGTAT-
1 TAATTATAA-TATA
103852 TAATTATAATATA
1 TAATTATAATATA
103865 TAATTATATATATA
1 TAATTATA-ATATA
103879 TAATT
1 TAATT
103884 GTTAGCATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
10 3 0.08
11 7 0.18
12 3 0.08
13 15 0.39
14 10 0.26
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (13 bp):
TAATTATAATATA
Found at i:104431 original size:26 final size:26
Alignment explanation
Indices: 104379--104431 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
104369 AATTCAATTT
** *
104379 ATATATTAGTTATAAATTTATTGTTC
1 ATATATTAGTTATAAATAAATTATTC
104405 ATATATTA-TTATATAATAAATTATTC
1 ATATATTAGTTATA-AATAAATTATTC
104431 A
1 A
104432 ATTATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (26 bp):
ATATATTAGTTATAAATAAATTATTC
Found at i:104472 original size:15 final size:15
Alignment explanation
Indices: 104443--104475 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
104433 TTATTTTATT
104443 TATTATAATAATAAA
1 TATTATAATAATAAA
104458 TATT-TAATAATTAAA
1 TATTATAATAA-TAAA
104473 TAT
1 TAT
104476 AATTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTATAATAATAAA
Found at i:104487 original size:17 final size:17
Alignment explanation
Indices: 104467--104514 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
104457 ATATTTAATA
104467 ATTAAATATAATTATAT
1 ATTAAATATAATTATAT
*
104484 ATTAAGTATAA--AT-T
1 ATTAAATATAATTATAT
*
104498 ATTAAAT-TATTTATAT
1 ATTAAATATAATTATAT
104514 A
1 A
104515 ATTTAACTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 7
0.71 0.09 0.20
Matches are distributed among these distances:
13 2 0.08
14 7 0.28
15 4 0.16
16 2 0.08
17 10 0.40
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
ATTAAATATAATTATAT
Found at i:104951 original size:10 final size:11
Alignment explanation
Indices: 104937--104968 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
104927 CTAATATATC
104937 ATAATTTAATT
1 ATAATTTAATT
104948 -TAATTT-ATT
1 ATAATTTAATT
104957 ATAATTTAATT
1 ATAATTTAATT
104968 A
1 A
104969 GTTATACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 3 0.16
10 12 0.63
11 4 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
ATAATTTAATT
Found at i:105070 original size:17 final size:17
Alignment explanation
Indices: 105036--105089 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
105026 CGTATTAATT
*
105036 ATTAATATTTAATAATATG
1 ATTAATA-TTAAT-ATATA
*
105055 TTTAATATTAATATATA
1 ATTAATATTAATATATA
*
105072 ATTAATATTTATAT-TA
1 ATTAATATTAATATATA
105088 AT
1 AT
105090 ATTTATCTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
16 4 0.13
17 16 0.52
18 5 0.16
19 6 0.19
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTAATATTAATATATA
Found at i:105100 original size:23 final size:24
Alignment explanation
Indices: 105030--105108 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 24
105020 TACATGCGTA
*
105030 TTAATTATTAATATTTAATAATATGT
1 TTAA-TATTAATATTTATTAATA-GT
*
105056 TTAATATTAATATATAATTAATA-T
1 TTAATATTAATAT-TTATTAATAGT
*
105080 TT-ATATTAATATTTATCTAATAGC
1 TTAATATTAATATTTAT-TAATAGT
105104 TTAAT
1 TTAAT
105109 TATATTAGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
22 3 0.07
23 15 0.33
24 5 0.11
25 11 0.24
26 11 0.24
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.52
Consensus pattern (24 bp):
TTAATATTAATATTTATTAATAGT
Found at i:105577 original size:27 final size:26
Alignment explanation
Indices: 105546--105596 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
105536 ATTATTAAAA
*
105546 TAATATATTTATTTAATAAATATACAT
1 TAATATAATTATTTAATAAA-ATACAT
*
105573 TAATATAATTATTTGATAAAATAC
1 TAATATAATTATTTAATAAAATAC
105597 TAAATTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (26 bp):
TAATATAATTATTTAATAAAATACAT
Found at i:105606 original size:28 final size:26
Alignment explanation
Indices: 105543--105609 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
105533 TTTATTATTA
* *
105543 AAATAATATATTTATTTAATAAATAT
1 AAATTATATAATTATTTAATAAATAT
* *
105569 ACATTAATATAATTATTTGATAAAATACT
1 AAATT-ATATAATTATTTAAT-AAATA-T
105598 AAATTATATAAT
1 AAATTATATAAT
105610 AATACTATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
26 3 0.09
27 13 0.39
28 12 0.36
29 5 0.15
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.43
Consensus pattern (26 bp):
AAATTATATAATTATTTAATAAATAT
Found at i:105715 original size:13 final size:13
Alignment explanation
Indices: 105697--105721 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105687 TATTAATTAG
105697 TAGTTTAATTAAA
1 TAGTTTAATTAAA
105710 TAGTTTAATTAA
1 TAGTTTAATTAA
105722 TACTTTATGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAGTTTAATTAAA
Found at i:105723 original size:12 final size:12
Alignment explanation
Indices: 105689--105728 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
105679 AATAATATTA
*
105689 TTAATTAGTAGT
1 TTAATTAATAGT
105701 TTAATTAAATAGT
1 TTAATT-AATAGT
*
105714 TTAATTAATACT
1 TTAATTAATAGT
105726 TTA
1 TTA
105729 TGAGTAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (12 bp):
TTAATTAATAGT
Found at i:105777 original size:28 final size:26
Alignment explanation
Indices: 105745--105847 Score: 76
Period size: 27 Copynumber: 4.0 Consensus size: 26
105735 ACAATATTTA
105745 TTAATAAATAACTTATTTAATAATAATT
1 TTAAT-AATAA-TTATTTAATAATAATT
*
105773 TTAAT-AT--TTATTTAA-ATTAATT
1 TTAATAATAATTATTTAATAATAATT
*
105795 TAAATAATAATATTATTTAATAATAA-T
1 TTAATAAT-A-ATTATTTAATAATAATT
*
105822 TTAAGT-ATAATATAATTAATAA-AATT
1 TTAA-TAATAAT-TATTTAATAATAATT
105848 ATATTATATT
Statistics
Matches: 61, Mismatches: 5, Indels: 20
0.71 0.06 0.23
Matches are distributed among these distances:
22 10 0.16
23 10 0.16
25 4 0.07
26 13 0.21
27 14 0.23
28 10 0.16
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (26 bp):
TTAATAATAATTATTTAATAATAATT
Found at i:105800 original size:22 final size:23
Alignment explanation
Indices: 105757--105825 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 23
105747 AATAAATAAC
*
105757 TTATTTAATAATAATTTTAATAT
1 TTATTTAATAATAATTTAAATAT
*
105780 TTATTTAA-ATTAATTTAAATAATAAT
1 TTATTTAATAATAATTT--A-AAT-AT
105806 ATTATTTAATAATAATTTAA
1 -TTATTTAATAATAATTTAA
105826 GTATAATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
25 4 0.11
26 3 0.08
27 8 0.22
28 7 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTATTTAATAATAATTTAAATAT
Found at i:105818 original size:16 final size:17
Alignment explanation
Indices: 105759--105825 Score: 61
Period size: 16 Copynumber: 4.1 Consensus size: 17
105749 TAAATAACTT
*
105759 ATTTAATAATAATTTTA
1 ATTTAATAATAATATTA
* *
105776 ATATTTAT-TTAA-ATTA
1 AT-TTAATAATAATATTA
105792 ATTTAAATAATAATATT-
1 ATTT-AATAATAATATTA
105809 ATTTAATAATAAT-TTA
1 ATTTAATAATAATATTA
105825 A
1 A
105826 GTATAATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
15 4 0.10
16 17 0.43
17 12 0.30
18 7 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAATAATAATATTA
Found at i:105850 original size:20 final size:20
Alignment explanation
Indices: 105827--105869 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
105817 ATAATTTAAG
105827 TATAATATAATTA-ATAAAAT
1 TATAATAT-ATTAGATAAAAT
* *
105847 TATATTATATTAGATAATAT
1 TATAATATATTAGATAAAAT
105867 TAT
1 TAT
105870 TTAGACTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TATAATATATTAGATAAAAT
Found at i:106748 original size:21 final size:20
Alignment explanation
Indices: 106689--106748 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
106679 TATCTATATT
* *
106689 ATAATAAAATAATATTATAA
1 ATAATAATATAATATTACAA
* *
106709 CTAATTAATATACAGATTACAA
1 ATAA-TAATATA-ATATTACAA
106731 ATAATAATATCAATATTA
1 ATAATAATAT-AATATTA
106749 GGTATAATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 3 0.10
21 17 0.55
22 11 0.35
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.35
Consensus pattern (20 bp):
ATAATAATATAATATTACAA
Found at i:107118 original size:26 final size:26
Alignment explanation
Indices: 107089--107150 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
107079 ATTAAATTTA
* *
107089 AATATATTATTATTAAAAATTAT-ATT
1 AATATAATATAATTAAAAATTATGA-T
*
107115 AATATAATATAATTATAAATTATGAT
1 AATATAATATAATTAAAAATTATGAT
107141 AATATTAATA
1 AATA-TAATA
107151 AGTTAAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 25 0.81
27 6 0.19
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (26 bp):
AATATAATATAATTAAAAATTATGAT
Found at i:107200 original size:17 final size:17
Alignment explanation
Indices: 107178--107211 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
107168 AAATAATTAA
*
107178 TTATTATAATGTTATAT
1 TTATTATAATATTATAT
107195 TTATTATAATATTATAT
1 TTATTATAATATTATAT
107212 AAATATCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTATTATAATATTATAT
Found at i:107267 original size:20 final size:21
Alignment explanation
Indices: 107225--107305 Score: 69
Period size: 20 Copynumber: 3.9 Consensus size: 21
107215 TATCCAATAT
* *
107225 TTAATTTA-TATAAAATTATAA
1 TTAAATTATTATAATATTA-AA
*
107246 TTATATTATTATAAT-TTAAA
1 TTAAATTATTATAATATTAAA
* *
107266 TTAAATTA-TATAGTATTAAT
1 TTAAATTATTATAATATTAAA
*
107286 TTAAATTATTAATATTATTA
1 TTAAATTATT-ATAATATTA
107306 GTTAGTATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.10
20 21 0.43
21 10 0.20
22 13 0.27
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (21 bp):
TTAAATTATTATAATATTAAA
Found at i:107285 original size:25 final size:26
Alignment explanation
Indices: 107237--107307 Score: 85
Period size: 25 Copynumber: 2.7 Consensus size: 26
107227 AATTTATATA
*
107237 AAATTATAATTATATTATTATAATTT
1 AAATTATAATTATATTAGTATAATTT
107263 AAATTA-AATTATA-TAGTATTAATTT
1 AAATTATAATTATATTAGTA-TAATTT
107288 AAATTATTAA-TATTATTAGT
1 AAATTA-TAATTA-TATTAGT
107308 TAGTATAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
24 4 0.10
25 19 0.49
26 8 0.21
27 4 0.10
28 4 0.10
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (26 bp):
AAATTATAATTATATTAGTATAATTT
Found at i:107352 original size:21 final size:22
Alignment explanation
Indices: 107320--107360 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
107310 GTATAAGTAT
*
107320 TATATATTATAATATTTAAACA
1 TATATATTATAATATATAAACA
107342 TATAT-TTATAATATATAAA
1 TATATATTATAATATATAAA
107361 TTAAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
TATATATTATAATATATAAACA
Found at i:107616 original size:17 final size:17
Alignment explanation
Indices: 107574--107617 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
107564 TACTTCATAT
*
107574 ATATTATTTATATTATA
1 ATATTAGTTATATTATA
*
107591 ATATAAGTTATATTAATA
1 ATATTAGTTATATT-ATA
107609 A-ATTAGTTA
1 ATATTAGTTA
107618 CATCATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (17 bp):
ATATTAGTTATATTATA
Found at i:108150 original size:101 final size:101
Alignment explanation
Indices: 108037--108244 Score: 416
Period size: 101 Copynumber: 2.1 Consensus size: 101
108027 TATATTAATG
108037 AGTAATTAATATAATATATATTATTAACAAATGTATATTAATTTATGATATTGAATCAATTAATT
1 AGTAATTAATATAATATATATTATTAACAAATGTATATTAATTTATGATATTGAATCAATTAATT
108102 CATATGAGATTTATCTAGTTAAATTATTTGTATATT
66 CATATGAGATTTATCTAGTTAAATTATTTGTATATT
108138 AGTAATTAATATAATATATATTATTAACAAATGTATATTAATTTATGATATTGAATCAATTAATT
1 AGTAATTAATATAATATATATTATTAACAAATGTATATTAATTTATGATATTGAATCAATTAATT
108203 CATATGAGATTTATCTAGTTAAATTATTTGTATATT
66 CATATGAGATTTATCTAGTTAAATTATTTGTATATT
108239 AGTAAT
1 AGTAAT
108245 AATCGATTCT
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 107 1.00
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46
Consensus pattern (101 bp):
AGTAATTAATATAATATATATTATTAACAAATGTATATTAATTTATGATATTGAATCAATTAATT
CATATGAGATTTATCTAGTTAAATTATTTGTATATT
Found at i:108336 original size:21 final size:22
Alignment explanation
Indices: 108312--108357 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
108302 TTCTTAGTTA
*
108312 TAAATCTAATTGTATTT-ATTT
1 TAAATATAATTGTATTTAATTT
* *
108333 TAAATATTATTTTATTTAATTT
1 TAAATATAATTGTATTTAATTT
108355 TAA
1 TAA
108358 TAATCAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (22 bp):
TAAATATAATTGTATTTAATTT
Found at i:108398 original size:23 final size:24
Alignment explanation
Indices: 108345--108399 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
108335 AATATTATTT
* *
108345 TATTTAATTTTAATAATCAATTTA
1 TATTAAATTTTAATAATCAATATA
* * *
108369 AAATAAATTTT-ATATTCAATATA
1 TATTAAATTTTAATAATCAATATA
108392 TATTAAAT
1 TATTAAAT
108400 AATCTAAAAG
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (24 bp):
TATTAAATTTTAATAATCAATATA
Found at i:108531 original size:11 final size:12
Alignment explanation
Indices: 108515--108584 Score: 53
Period size: 11 Copynumber: 6.2 Consensus size: 12
108505 TCGTATTTTA
108515 AATTATTATT-T
1 AATTATTATTAT
108526 AATTATTATTAT
1 AATTATTATTAT
108538 AATAATATTATTA-
1 AAT--TATTATTAT
*
108551 AA-TA--ATAAT
1 AATTATTATTAT
* *
108560 AATTATAATAAT
1 AATTATTATTAT
108572 -ATTATTATTAT
1 AATTATTATTAT
108583 AA
1 AA
108585 AACAATATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 15
0.73 0.05 0.23
Matches are distributed among these distances:
8 3 0.06
9 2 0.04
10 4 0.08
11 19 0.40
12 10 0.21
13 2 0.04
14 8 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
AATTATTATTAT
Found at i:108535 original size:14 final size:14
Alignment explanation
Indices: 108516--108584 Score: 79
Period size: 14 Copynumber: 4.9 Consensus size: 14
108506 CGTATTTTAA
*
108516 ATTATTAT-TTAATT
1 ATTATTATAATAA-T
108530 ATTATTATAATAAT
1 ATTATTATAATAAT
108544 ATTATTA-AATAAT
1 ATTATTATAATAAT
*
108557 AATAATTATAATAAT
1 -ATTATTATAATAAT
*
108572 ATTATTATTATAA
1 ATTATTATAATAA
108585 AACAATATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
13 6 0.12
14 33 0.69
15 9 0.19
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
ATTATTATAATAAT
Found at i:110025 original size:22 final size:22
Alignment explanation
Indices: 109986--110027 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
109976 TCTAATTAAA
*
109986 TATTATTTAATTATAAAATTAG
1 TATTATTTAATTAAAAAATTAG
110008 TATTATTT-ATTGAAAAAATT
1 TATTATTTAATT-AAAAAATT
110028 TAAATAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (22 bp):
TATTATTTAATTAAAAAATTAG
Found at i:110696 original size:17 final size:17
Alignment explanation
Indices: 110674--110743 Score: 59
Period size: 19 Copynumber: 3.9 Consensus size: 17
110664 TTTAATAATT
110674 ATTATTATAAATAATAA
1 ATTATTATAAATAATAA
* *
110691 ATTATTATAATTTATAA
1 ATTATTATAAATAATAA
**
110708 ATTTATATATATTTAATATA
1 A-TTAT-TATAAATAATA-A
*
110728 TATAATTATAAATAAT
1 -ATTATTATAAATAAT
110744 TAATAATGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 16 0.38
18 4 0.10
19 17 0.40
20 4 0.10
21 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATTATAAATAATAA
Found at i:110722 original size:18 final size:17
Alignment explanation
Indices: 110674--110710 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
110664 TTTAATAATT
* *
110674 ATTATTATAAATAATAA
1 ATTATTATAATTTATAA
110691 ATTATTATAATTTATAA
1 ATTATTATAATTTATAA
110708 ATT
1 ATT
110711 TATATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATTATAATTTATAA
Found at i:110851 original size:27 final size:27
Alignment explanation
Indices: 110821--110876 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
110811 AATTAAGTAT
*
110821 ATTATTTTAATATAATAATAA-ATATTA
1 ATTATTATAAT-TAATAATAATATATTA
*
110848 ATTATTATAATTAATAATAATTTATTA
1 ATTATTATAATTAATAATAATATATTA
110875 AT
1 AT
110877 AGTAATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
ATTATTATAATTAATAATAATATATTA
Found at i:110862 original size:23 final size:23
Alignment explanation
Indices: 110665--110892 Score: 72
Period size: 23 Copynumber: 10.0 Consensus size: 23
110655 ACTTAAATTT
* *
110665 TTAATAATTATTATT-ATAAATAA
1 TTAATTATTATAATTAATAAAT-A
* *
110688 TAAATTATTATAATTTATAAAT-
1 TTAATTATTATAATTAATAAATA
* *
110710 TT-A-TA-TATATTTAATATATA
1 TTAATTATTATAATTAATAAATA
*
110730 -TAATTATAAATAATTAAT-AATGA
1 TTAATTAT-TATAATTAATAAAT-A
* *
110753 TTCAAATATT-T-AGTAA-AAATA
1 TT-AATTATTATAATTAATAAATA
* *
110774 TAATAATTATTGT-ATTAATAATACA
1 T--TAATTATTATAATTAATAA-ATA
* * *
110799 ATAATTTTTTAAAATTAAGT--ATA
1 TTAA-TTATTATAATTAA-TAAATA
* *
110822 TTATTTTAATATAA-TAATAAATA
1 TTA-ATTATTATAATTAATAAATA
110845 TTAATTATTATAATTAAT-AATAA
1 TTAATTATTATAATTAATAAAT-A
* * *
110868 TTTATTAATAGTAATTAATATATA
1 TTAATTATTA-TAATTAATAAATA
110892 T
1 T
110893 GTCCAATATT
Statistics
Matches: 149, Mismatches: 31, Indels: 49
0.65 0.14 0.21
Matches are distributed among these distances:
19 12 0.08
20 3 0.02
21 6 0.04
22 30 0.20
23 60 0.40
24 23 0.15
25 14 0.09
26 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (23 bp):
TTAATTATTATAATTAATAAATA
Found at i:110863 original size:19 final size:20
Alignment explanation
Indices: 110835--110874 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
110825 TTTTAATATA
*
110835 ATAATAAATATTAA-TTATT
1 ATAATAAATAATAATTTATT
*
110854 ATAATTAATAATAATTTATT
1 ATAATAAATAATAATTTATT
110874 A
1 A
110875 ATAGTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAATAAATAATAATTTATT
Found at i:110917 original size:14 final size:14
Alignment explanation
Indices: 110898--110931 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
110888 TATATGTCCA
110898 ATATTAAAATTAAT
1 ATATTAAAATTAAT
*
110912 ATATTAATATTAAT
1 ATATTAAAATTAAT
110926 ATATTA
1 ATATTA
110932 CACTATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATTAAAATTAAT
Found at i:111044 original size:25 final size:25
Alignment explanation
Indices: 111011--111075 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 25
111001 ATAGGATATT
*
111011 TAATGTTATATTAAATAAAATTAAA
1 TAATATTATATTAAATAAAATTAAA
* *
111036 TAATATTATTATAATAAATAATATTGAA
1 TAATATTA-TAT--TAAATAAAATTAAA
111064 TAATATTATATT
1 TAATATTATATT
111076 GTTATAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 8 0.24
26 3 0.09
27 3 0.09
28 20 0.59
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (25 bp):
TAATATTATATTAAATAAAATTAAA
Found at i:111053 original size:28 final size:28
Alignment explanation
Indices: 111016--111072 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
111006 ATATTTAATG
*
111016 TTATATTAAATAAAATTAAATAATATTA
1 TTATAATAAATAAAATTAAATAATATTA
* *
111044 TTATAATAAATAATATTGAATAATATTA
1 TTATAATAAATAAAATTAAATAATATTA
111072 T
1 T
111073 ATTGTTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (28 bp):
TTATAATAAATAAAATTAAATAATATTA
Found at i:111089 original size:15 final size:15
Alignment explanation
Indices: 111016--111089 Score: 53
Period size: 15 Copynumber: 4.9 Consensus size: 15
111006 ATATTTAATG
* **
111016 TTATATTAAATAAAA
1 TTATAATAAATATTA
111031 TTA-AAT-AATATTA
1 TTATAATAAATATTA
*
111044 TTATAATAAATAATA
1 TTATAATAAATATTA
* *
111059 TTGAATAATATTATATTG
1 TT--ATAATA-AATATTA
111077 TTATAATAAATAT
1 TTATAATAAATAT
111090 AGTTCATCTT
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
13 8 0.17
14 5 0.11
15 15 0.33
16 6 0.13
17 6 0.13
18 6 0.13
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (15 bp):
TTATAATAAATATTA
Found at i:111532 original size:24 final size:24
Alignment explanation
Indices: 111483--111546 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
111473 ATAATATAAG
* * *
111483 TATTATAA-TAA-TTAATATTTAT
1 TATTATAACTAATTTAATAATCAA
111505 TATTATAACTAATTTAATAATCAA
1 TATTATAACTAATTTAATAATCAA
111529 TATTAT-ACTAATGTTAAT
1 TATTATAACTAAT-TTAAT
111547 TAGTATTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 8 0.22
23 9 0.25
24 19 0.53
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (24 bp):
TATTATAACTAATTTAATAATCAA
Found at i:111791 original size:20 final size:22
Alignment explanation
Indices: 111753--111802 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 22
111743 TACTATATAT
111753 TAATATATAAATAATATAATTA
1 TAATATATAAATAATATAATTA
*
111775 TAAT-TATAAATTA-ATAATTA
1 TAATATATAAATAATATAATTA
111795 TAATATAT
1 TAATATAT
111803 TATACAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 11 0.42
21 11 0.42
22 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TAATATATAAATAATATAATTA
Found at i:111793 original size:14 final size:14
Alignment explanation
Indices: 111762--111797 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
111752 TTAATATATA
111762 AATAA-TAT-AATT
1 AATAATTATAAATT
111774 -ATAATTATAAATT
1 AATAATTATAAATT
111787 AATAATTATAA
1 AATAATTATAA
111798 TATATTATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 4 0.19
12 3 0.14
13 4 0.19
14 10 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AATAATTATAAATT
Found at i:112556 original size:182 final size:182
Alignment explanation
Indices: 112286--112698 Score: 414
Period size: 182 Copynumber: 2.3 Consensus size: 182
112276 TTTTAAATCT
* * * * * * *
112286 CTTATT-AGTTTT-AAAAAATTAATAGATTAGTATTACTTTATTCCGAACAAACTTA-TATGAA-
1 CTTATTAATTTTTGAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGC-TAGTATGAAT
** ** * *
112347 CAAAAATATTTGTTTTATGACAAAACAAAAGGTCATAATGATTTAAAATACAAAATTGTTCA-AA
65 TGAAAATATTTGTTTTATGACAAAACAAAAACTCATAACGATTTAAAATACAAAATTGCT-ATAA
* * * * * * *
112411 TAGT-TATAATTATTTGAATTGGTT-AGGTAAATAGAATTATTTTTTTAAATCTCTTA
129 TAGTCT-TAAATATTTAAACTGGTTCA-ATAAACA-AATT-TATTTCTAAATCTCTTA
*
112467 CTTATTAATTTTTG-AAATATTAATAAATTCA-TTTTATTTTATTTCGAATAAGCTAGTATGAAT
1 CTTATTAATTTTTGAAAATATTAATAAATT-AGTATTATTTTATTTCGAATAAGCTAGTATGAAT
* * * * *
112530 TGAAAAT-TTTGTTTTATGATAAAACAAAAACTCATAACGTTTTAAAATAGATAATTGCTATTAT
65 TGAAAATATTTGTTTTATGACAAAACAAAAACTCATAACGATTTAAAATACAAAATTGCTATAAT
* *
112594 AGTCTTAAATATTTAAACTGGTTCAATAAACAAATTTATTTCTAATTCTTTTA
130 AGTCTTAAATATTTAAACTGGTTCAATAAACAAATTTATTTCTAAATCTCTTA
* * *
112647 GTTATTAATTTTTGAAAATATTATTAGATTAGTATTATTTTATTTCGAATAA
1 CTTATTAATTTTTGAAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
112699 ATTTTTATGA
Statistics
Matches: 190, Mismatches: 32, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
180 27 0.14
181 45 0.24
182 110 0.58
183 8 0.04
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (182 bp):
CTTATTAATTTTTGAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTAGTATGAATT
GAAAATATTTGTTTTATGACAAAACAAAAACTCATAACGATTTAAAATACAAAATTGCTATAATA
GTCTTAAATATTTAAACTGGTTCAATAAACAAATTTATTTCTAAATCTCTTA
Found at i:112820 original size:29 final size:29
Alignment explanation
Indices: 112786--112850 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
112776 ATTTATTTAT
*
112786 TTAGTATAAAT-A-TTAATATATTATAAATA
1 TTAGTA-AAATAATTTAAAATATTAT-AATA
*
112815 TTAGTAAATTAATTTAAAATATTATAATA
1 TTAGTAAAATAATTTAAAATATTATAATA
112844 TTAGTAA
1 TTAGTAA
112851 CTTATAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 3 0.09
29 18 0.56
30 11 0.34
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.45
Consensus pattern (29 bp):
TTAGTAAAATAATTTAAAATATTATAATA
Found at i:112825 original size:17 final size:17
Alignment explanation
Indices: 112790--112825 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
112780 ATTTATTTAG
*
112790 TATAAATATTAATATAT
1 TATAAATATTAATAAAT
*
112807 TATAAATATTAGTAAAT
1 TATAAATATTAATAAAT
112824 TA
1 TA
112826 ATTTAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
TATAAATATTAATAAAT
Found at i:113012 original size:21 final size:21
Alignment explanation
Indices: 112986--113046 Score: 59
Period size: 24 Copynumber: 2.7 Consensus size: 21
112976 ATAAGTAATA
**
112986 AATTATATAATAATTTAATCT
1 AATTATATAATAATTTAAAAT
*
113007 AATTATTATATTAATTATTAAAAT
1 AATTA-TATAATAA-T-TTAAAAT
113031 AATTGATATAATAATT
1 AATT-ATATAATAATT
113047 AATTATTCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
21 5 0.16
22 8 0.25
23 2 0.06
24 16 0.50
25 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
AATTATATAATAATTTAAAAT
Found at i:113456 original size:20 final size:19
Alignment explanation
Indices: 113431--113485 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
113421 TTTTAGTTTA
*
113431 ATAATTATTATAATATTTGG
1 ATAATTATTATAATAATT-G
113451 ATAATTTATTCAT-ATAATTG
1 ATAA-TTATT-ATAATAATTG
113471 ATAATTATTA-AATAA
1 ATAATTATTATAATAA
113486 CTAATATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 5 0.16
19 5 0.16
20 9 0.29
21 10 0.32
22 2 0.06
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.47
Consensus pattern (19 bp):
ATAATTATTATAATAATTG
Found at i:113562 original size:31 final size:34
Alignment explanation
Indices: 113519--113592 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 34
113509 CTTATAATAA
113519 TTAATATT-TAATTAAAATAA-ATTAA-AAGTAC
1 TTAATATTATAATTAAAATAATATTAATAAGTAC
* * *
113550 TTAAT-TTATAATTTAATTAATATTAATAATTAC
1 TTAATATTATAATTAAAATAATATTAATAAGTAC
113583 TTAATATTAT
1 TTAATATTAT
113593 TAGGATAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 2 0.06
31 15 0.42
32 5 0.14
33 10 0.28
34 4 0.11
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (34 bp):
TTAATATTATAATTAAAATAATATTAATAAGTAC
Found at i:113588 original size:17 final size:18
Alignment explanation
Indices: 113547--113591 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
113537 AAATTAAAAG
113547 TACTTAAT-TT-ATAATT
1 TACTTAATATTAATAATT
*
113563 TAATTAATATTAATAA-T
1 TACTTAATATTAATAATT
113580 TACTTAATATTA
1 TACTTAATATTA
113592 TTAGGATAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 14 0.56
18 4 0.16
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
TACTTAATATTAATAATT
Found at i:113663 original size:17 final size:17
Alignment explanation
Indices: 113607--113666 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
113597 ATAGTTATAT
* *
113607 AATATTATTATATACTA
1 AATATTATAATATAATA
113624 AATATT-TAA-ATTAAATA
1 AATATTATAATA-T-AATA
**
113641 TCTATTATAATATAATA
1 AATATTATAATATAATA
113658 AATATTATA
1 AATATTATA
113667 TAATTATATT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 1 0.03
16 3 0.09
17 24 0.73
18 4 0.12
19 1 0.03
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
AATATTATAATATAATA
Found at i:113677 original size:13 final size:13
Alignment explanation
Indices: 113659--113702 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
113649 AATATAATAA
113659 ATATTATATAATT
1 ATATTATATAATT
113672 ATATTATCA-AATT
1 ATATTAT-ATAATT
*
113685 A-ATTATATAATA
1 ATATTATATAATT
113697 ATATTA
1 ATATTA
113703 ATTTTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
11 1 0.04
12 9 0.33
13 16 0.59
14 1 0.04
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATTATATAATT
Found at i:113689 original size:17 final size:17
Alignment explanation
Indices: 113643--113715 Score: 59
Period size: 17 Copynumber: 4.6 Consensus size: 17
113633 ATTAAATATC
113643 TATTATAATA-TAA-TA
1 TATTATAATATTAATTA
* *
113658 -AATATTATA-TAATTA
1 TATTATAATATTAATTA
113673 TATTATCAA-ATTAATTA
1 TATTAT-AATATTAATTA
* *
113690 TATAATAATATTAATTT
1 TATTATAATATTAATTA
113707 TATTA-AATA
1 TATTATAATA
113716 ATTGTATAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
14 10 0.22
15 2 0.04
16 11 0.24
17 23 0.50
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (17 bp):
TATTATAATATTAATTA
Found at i:114358 original size:9 final size:8
Alignment explanation
Indices: 114276--114353 Score: 52
Period size: 9 Copynumber: 9.2 Consensus size: 8
114266 AATTTTAAAT
*
114276 TATTTTAA
1 TATTATAA
114284 T-TTATAA
1 TATTATAA
*
114291 TATTAATTA
1 TATT-ATAA
114300 TAATTATAA
1 T-ATTATAA
*
114309 -ACATATAA
1 TA-TTATAA
*
114317 TATTATTA
1 TATTATAA
114325 TATTAGTAA
1 TATTA-TAA
114334 TATTATAA
1 TATTATAA
114342 TTATTATTAA
1 -TATTA-TAA
114352 TA
1 TA
114354 ATATTTCATT
Statistics
Matches: 55, Mismatches: 7, Indels: 15
0.71 0.09 0.19
Matches are distributed among these distances:
7 7 0.13
8 20 0.36
9 22 0.40
10 6 0.11
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (8 bp):
TATTATAA
Done.