Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168349.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_570, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22700
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28


Found at i:2837 original size:84 final size:84

Alignment explanation


    Indices: 2696--2864  Score: 311
    Period size: 84  Copynumber: 2.0  Consensus size: 84

       2686 TCTTGGCTTA

                                *                             *          *   
       2696 GGACTTGTGCATAGATAGTGTCTTTCTCCCTTACTCATTCTAGCAATGCCTTTATTGCTAGGGGA
          1 GGACTTGTGCATAGATAGTGGCTTTCTCCCTTACTCATTCTAGCAATGCCCTTATTGCTAGAGGA

                               
       2761 TGTCATTTTTTCATTACAC
         66 TGTCATTTTTTCATTACAC

                                                                             
       2780 GGACTTGTGCATAGATAGTGGCTTTCTCCCTTACTCATTCTAGCAATGCCCTTATTGCTAGAGGA
          1 GGACTTGTGCATAGATAGTGGCTTTCTCCCTTACTCATTCTAGCAATGCCCTTATTGCTAGAGGA

                               
       2845 TGTCATTTTTTCATTACAC
         66 TGTCATTTTTTCATTACAC

             
       2864 G
          1 G

       2865 CCACATCGGC


Statistics
Matches: 82,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  84   82  1.00

ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39


Consensus pattern (84 bp):   
GGACTTGTGCATAGATAGTGGCTTTCTCCCTTACTCATTCTAGCAATGCCCTTATTGCTAGAGGA
TGTCATTTTTTCATTACAC

Found at i:14698 original size:13 final size:13

Alignment explanation


    Indices: 14680--14712  Score: 66
    Period size: 13  Copynumber: 2.5  Consensus size: 13

      14670 GTAACCTAGA

                         
      14680 ATGAGGCTAAAGG
          1 ATGAGGCTAAAGG

                         
      14693 ATGAGGCTAAAGG
          1 ATGAGGCTAAAGG

                   
      14706 ATGAGGC
          1 ATGAGGC

      14713 CTTGAGATAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.36, C:0.09, G:0.39, T:0.15


Consensus pattern (13 bp):   
ATGAGGCTAAAGG

Found at i:21357 original size:36 final size:36

Alignment explanation


    Indices: 21317--21416  Score: 110
    Period size: 36  Copynumber: 2.8  Consensus size: 36

      21307 ATCTGCTAAG

                       *  *   *           *     
      21317 GGTGTCTAAGGTAATAATGGGCCAGCATATGCTGGT
          1 GGTGTCTAAGGCAACAATAGGCCAGCATATACTGGT

                   *  *           *     *       
      21353 GGTGTCTGAGCCAACAATAGGCTAGCATGTACTGGT
          1 GGTGTCTAAGGCAACAATAGGCCAGCATATACTGGT

                             *    *     
      21389 GGTGTCTAAGGCAACAACAGGCTAGCAT
          1 GGTGTCTAAGGCAACAATAGGCCAGCAT

      21417 CTATTAATGG


Statistics
Matches: 53,  Mismatches: 11, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  36   53  1.00

ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24


Consensus pattern (36 bp):   
GGTGTCTAAGGCAACAATAGGCCAGCATATACTGGT

Found at i:21428 original size:36 final size:36

Alignment explanation


    Indices: 21352--21429  Score: 93
    Period size: 36  Copynumber: 2.2  Consensus size: 36

      21342 CATATGCTGG

                    *         *          *    **
      21352 TGGTGTCTGAGCCAACAATAGGCTAGCATGTACTGG
          1 TGGTGTCTAAGCCAACAACAGGCTAGCATCTACTAA

                       *                    *   
      21388 TGGTGTCTAAGGCAACAACAGGCTAGCATCTATTAA
          1 TGGTGTCTAAGCCAACAACAGGCTAGCATCTACTAA

                  
      21424 TGGTGT
          1 TGGTGT

      21430 GGATATGATT


Statistics
Matches: 35,  Mismatches: 7, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  36   35  1.00

ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27


Consensus pattern (36 bp):   
TGGTGTCTAAGCCAACAACAGGCTAGCATCTACTAA
Done.