Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167878.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65549
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Found at i:2817 original size:900 final size:898
Alignment explanation
Indices: 16--13482 Score: 11109
Period size: 900 Copynumber: 14.9 Consensus size: 898
6 CCCTTGATCT
* * *
16 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGTGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-AGGC
* * *** *
81 GGGCACTACGTTGGCCAGAGAGGCGGGATGTAAAAGCCCTGGATCGATAGGGTGGTAGGTGGGTT
65 GAGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
146 TAGGCACATATTCATATTTCTGCCATTCCAATACCATTTTTACGGCTTGTAAATTCATACAATGG
129 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
211 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAATCGTTTTGTATTTTTCAC-ATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** * *
275 AAACTTTTTACGGTTCGAGATTTTTAAAAAATTTTTTAAGAAGG-TTTTTTGACCCCAAACTTGG
259 AAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTG-CCCCAAACTTGG
* * * *
339 TAGACGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTAGAAGTGTAC
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * * *
404 AGGATTTTGTGACCATTTGAAAATACTATCCCCATTTCAGTCACTTTAATGGCTAATGGCAACAA
388 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
469 ACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAATGCGGGATAGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG-ATGAGGGATAGGG
*
534 GGCC-ATATAAAGGGCCAATGTACCAGCACCCATCGCCCATCACTGTGCGCACACCCCCCCGGCC
517 GGCCAATAT-AAGGGCCAA-GTACCAGCACCCATCGCACATCA-TGTGCGCACA-CCCCCCGGCC
* * * * * *
598 CCCCCAATCGCCAGAGCCCCAATGGGCGTGCGGTCAGGTTCT-TCGACGATGC-CCTGACTGATG
578 CCCCCAATCGTCGGAACCCCAAT-GCCGT-CGGTCAGGTTCTCT-GGCGATGCTCC-G-GTGATG
* * *** * **
661 GTGCCCCGGGCAAAAAAAAAATACAGCAACCAGCAGCCTGC-CTGAGGCCCAATATGTGCACCCG
638 GTGCCCCGAGC-GAAAAAAAATGTGGC-ACCAGCA-CATGCTC-GA-GCCCAGCATGTGCACCCG
725 CAACCCTC-G----GT-C---C--A-A-T-----TG-A---T-T-CTTAGACTGGGAATGAACTC
698 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTATGCTTAGACTGGGAATGAACTC
* *
766 CGTATGGCCCTAAGTCAACCCACGAAACGAGTGTGGCGGGGCGGCTCAGTCGGCCCACGAGGGGA
763 CGTAT-G-CCTAAGTCAACCCACGAAACGAGCGT-GC-GGGC-GCTCAGCCGG-CCA-GAGGGG-
* * *
831 CA-GATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCAGTGTGCTACCGATCCTGCTGCCGCAAC
820 CAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAAC
*
895 CCTCAGTCCGGTCC
885 CCTCAGTCTGGTCC
* * * *
909 AATCTTAGACTGGGAATGATACTCCGTATGCCTAACCCAACTGACAAAACGAGCGGGCGGGCGAG
1 GATCTTAGACTGGGAATGA-ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG-GAG
* * * * * *
974 CGGGCAGGCACTATGCCGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAAGGTGGCAGGTG
63 -GCG-A-GCACTACGCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1039 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
125 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * * *
1104 ATCGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATT
190 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * *
1169 TTCCAAACTTTTTACGGTTCGAGA-TTATTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACT
255 TTTGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAACT
* * * *
1233 TGGTAGACGTGATCCTCGTATTTTTTTTGG-ATTGCACAAAAAAGTTCAGCTAAAAACTTGAAGT
320 TGGTAGACGTGATCCTTGTATTTTTGTTGGCA-TGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
1297 GTACAGGATTTTGTGACCATTTCAAAAAAATGTCCCTATTTCAGACACTTTAATGGCTACTGGCA
384 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * *
1362 GCAAACCTGTAAAATCTCACATGCTCTTTAAGGGAGTGTGAGTTCTCAAGATTTGATGAGGGGTA
449 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
1427 GGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACATCATGTGCGCACACCCCCCTTCCG
514 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC--CCG
* * * * * * * *
1492 GCCCCTTCCACTCGTCGGAACCCTAATACCGTCGATCAGGTTCTCCGACGATGCTCCGAG-GATA
575 GCCCC-CCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCG-GTGATG
* * * * * *
1556 GTGCCCCGGGCGAAAAAAAATGCGGCACTAGCACATGCCCGAGCCAAGCATGGGCACCCGCAA--
638 GTGCCCCGAGCGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACC
* **
1619 --C---CC--T-CG---TT---CT-GG--T---C-CAAT-CTTAGACTGGGAATGAACTCTATAT
703 CTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * *
1662 GCCAAAGTCAACCCACAAAATGAGCGTACGGGTGCTCAACCGGGCAGAAGGGCAGGATGCGCAAG
768 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* ** * * * *
1727 CCGGGGATCGGTCGGGTCCCCCTCAAAGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGTC
833 CCGGGGATCGGCCGGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTC
*
1792 A
898 C
***
1793 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAAAAACGAAACGAGCGGGC-GGACGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGA--GG
* * * *
1857 CGGGCACTACGCCGGCCATAGAGGCGGGATGCGTAAGCCGTGGATCAATAGGGTGGTAGGTGGGT
64 CGAGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
1922 TTAGGCACATCTTCATATTTCTACCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATT
128 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
1987 GTCCCTTAAGCCTTGATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
193 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
*
2052 AAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCC-AACTTGG
258 GAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAACTTGG
* *
2116 TAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTAC
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
2180 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCTA
388 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
2245 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
2310 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACTCCCCGGCCCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* *
2375 AATCG-CTGGAACCCCAACGCCGTCAGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGA
583 AATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGA
2439 GCGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCA
647 GCGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCA
* *
2504 GTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGGCTGGGAATGAACTCTGTATGCCTAAG
712 GTCCGATCTTAGACTGGGAATGAAC-TC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
2569 TCAACCCACGAAACGAGCCTGCGGGCCCTCAACCAGCCAGAGGGGCAGGATGTGCAAGCCGTGGA
775 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * * * *
2634 TCGGCCGGGTCCCCCTTAGCGTGCTACCGATCTTGCTACTGTAACCTTCAGTCTGATCC
840 TCGGCCGGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCC
*
2693 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGTAGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-AGGC
2758 GAGCACTACGCAGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
65 GAGCACTACGC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
2823 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
2888 TCCCTTAAGCTTTCATGTTAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCACGATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * ** *
2953 AAACTTTCTACGGTTTGAGATTTTTTAAAAATTTTTGCAGAAGGATTTTTTGCCCCAAACTTGGT
259 AAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAACTTGGT
* * * *
3018 AGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCCAAAAAGTCGAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
3083 GGATTTTGTGACCATTTGAAAACAGTGTCCCCATTTCAGACACTTTAATGGTTATTGGCAGCAAA
389 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
3148 CCTATAAAATCTCAAATGCTATTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* **
3213 CCAATATAAGGG-CAAGTACCAGCACCCATTGCACATCATGTGCGCACACCACCCCGG-AACCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCC
* * * * * *
3276 AATTGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCTGGG
583 AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGAG
* * * * *
3341 TGAAAAAAAATGTGGTACCAGCACATGCCCGAGCCTAGCATGTGCACCCACAACCCTCGGT-C--
648 CGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAG
* *
3403 T--G------G--T----CTG-A---TA---TTAGACTGGGAATGAACTCCGTATGCCTAAGTCG
713 TCCGATCTTAGACTGGGAATGAACTCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
3447 ACTCACGAAACGAGCATGCGGGCGTTCAACCGGCCAGAGTGGCAGGATGCGCAAGCCGGGGATCG
778 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
** * * * * * * *
3512 ATCGGGTCCCACTCAACGTGCTATCGATCTTGCTATCGTAACCCTCAGTTTGGTCC
843 GCCGGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCC
* *
3568 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGGCCGAC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG--GA-
* * *
3633 GG-GCAGGCACTACGCCAGCCAGAGAGG-TGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
62 GGCG-A-GCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* **
3696 GGGTTTAGGCACATCTTCATATTTCTACCACACCAATGCCATTTTTATGGCTTGTAAATTCATAC
124 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
3761 AATGGTCCCTTAAGCCATCATGTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCACAAT
189 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * * *
3826 TTTGGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTCTTTCAAAAAGAGTTTTAGACCCAAAC
254 TTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAAC
* *
3891 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCAAAAAACTCGAAGT
319 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
3956 GTACAGGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGTTACTGGCA
384 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
4021 GCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
449 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
4086 GGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGACCC
514 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
** * * * *
4151 CACCCAATCGTCGGAACCATAATGCCGCCGGTCATGTTCTCTGACGATGCTCTGGTGATGGTGCC
579 C-CCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCC
* * * * *
4216 CTGAGCGAAAAAAAATGTGGCACCAGCACATTCTCGAACCCAACATGTGC-CCTGCAA-CC-C--
643 CCGAGCGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGG
* *
4276 T-C-G---G----T---CT-GG--T---CT-GAT-CTTAGACTGAGAATGAACTCCGTATGCCTA
708 TCCAGTCCGATCTTAGACTGGGAATGAACTCTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
4321 AATCAACCCACGAAACGAGCGTGCGGACGCTCAGCCAGCCAGAGGGGCTGGATGCACAAGCCGAG
773 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
** * * * * ** ** * * * *
4386 GATCAACTGGGTCCCCCTCAACGTGCTGCCGATCTTGCTGTCATAACCGTCGGCCCGGTCC
838 GATCGGCCGGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCC
* * * * ** * **
4447 AATCTTAGACTAGGAATGAACTTCATATGCCTAAGCCAACATACGAAACGAGCAGGCGGGCAGAT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-AGGC
* * * *
4512 GAGTACTACGTCGACCAGAGAGACGGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTGGGTT
65 GAGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* ** * *
4577 TAGGCACATCTTCATGTTTCTGCCCGGCCAATGCTATTTTTATGGCTTGGAAATTCATACAATGG
129 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
4642 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTA-TTTTCACTATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * ** * * *
4706 AAACTTTTTATGATTCGGGATTTTTTTTTAATTTTTTCAGATGGAGTTTTGGCCCCAAACTTGGT
259 AAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAACTTGGT
* *
4771 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
4836 GGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
4901 CCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
4965 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCC-GACCCCCCA
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCA
* * * *** ** * *
5029 ATCGTCGGATCCCCAATGCTGCCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGGGT
584 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGAGC
** * * * * * *
5094 GAAAAAAAATACGACACCAGCACATGCCCGACCCCAGCATGTGCACCCACAACCCTCGGTTCGGT
649 GAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGT
5159 CCGATCTTAGACTGGGAATGAA--C--T-C-T-G--T----ATG----CC---TG----AGTCAA
714 CCGATCTTAGACTGGGAATGAACTCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
5200 CCCACGAAACGAGCATGCGAGCACTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA
779 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGG
* * * ** *
5265 CCGGG-GCCCCTCAGGGTGCTACCGATCCTCCTACCGCAACCCTTGGTCTGATCC
844 CCGGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCC
* * * *
5319 GATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGAGCGAGCGGGCGG-G
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGCG
* * * * *
5383 TGGCACTACGCCGGCCAAAGAGGTGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTAGGTT
66 -AGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
5448 TAGGCACATCTTCATATTTATGCCGTGCCAATGACATTTTTATGGCTTGTAAATTCAAACAATGG
129 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
5513 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGGCTCGTTTTCTATTTTT-ATGATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
5577 AAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGA-TTTTTGGCCCCAAACTTGG
259 AAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTT-GCCCCAAACTTGG
* * *
5641 TAGTCGTGATCCTTGTATTTTTGTGGGCATGCACAAAAACATTCAGCT-AAAAC-C-AAGTGCAT
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG--T
* * *
5703 AC-GGATTTTTGTGACCATTTGAAGAAAAATGTCCCC-TTTCAAACACTTTCATGGCTACTGGCA
386 ACAGGA-TTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * * *
5766 GCAAATCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTTAGTTCTTGAGGTATGAAGAGGGATA
449 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
5830 GGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGC
514 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGC
* * * **
5895 CCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCT-TCAGCGATGCTCCGACGATGGTG
577 CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCT-GGCGATGCTCCGGTGATGGTG
* * ** * *
5959 CCTCGGGCGAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCACAACTCTC
641 CCCCGAGCGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTC
* * *
6024 AGTCCGGTCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGATTGGGAATGAACTCCGTATG
706 GGTCCAGTCCGATCTTAGACTGGGAATGAACTC--TATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
6089 CCTGAGTCAACCCACAAAACAATCGTGCGGGCACTCAGTCGGCCAGAGGGGTAGAATGCGCAAGC
769 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * * * * * * *
6154 CGGGGATCTGCTGGGTCCCCCTCAGCGTGCTGCCGATCTTGCTATCGTAACCCTCAGTCCGATCC
834 CGGGGATCGGCCGGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCC
* * * * *** *
6219 AATCTTATACTAGGAATGAACTCCGTATGCCTAAGACAATTAACGAAACGAGCGGGTGGGCAGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-AGGC
* * * ** *
6284 GGGCACTACGCCGGCCAGAAAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGCAGCTT
65 GAGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
6349 TTGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTAATGCAATGG
129 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
6413 TCCCTTAAGCCTCCATGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * ** * *
6478 AAACATTTTACGGTTCGAGATTTGTTTAAAATTTTTTGCGAAAGGAGTTTTGGACCCAAACTTGG
259 AAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAG-AAGGAGTTTTTGCCCCAAACTTGG
* * * *
6543 TAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAGTCGAAGTGTAT
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
6608 AGGATTTTGTAACCATTTG-AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAACAA
388 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * *
6672 ACCTGTAAAATCTCAAATACTCTTTAGGGGGGTGTGAGTTCTAGAGGTTTGATGAGAGATAGGGA
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *** * * * * *
6737 GCCAATATAAGGGCCAAGTACTAGTGTCACGGGTCG-AGACTTAAGCTCCG-A-ACCCGCACGGC
518 GCCAATATAAGGGCCAAGTACCA--G-CACCCATCGCACA-TCATG-TGCGCACACCC-CCCGGC
* * * * * * *
6799 TCCGGGACCCGGGCATTCACCCTTCCG-ACGTCCCAGATCAGCCTGACCGCCACGGTTCACACCC
577 -CC----CCC---CA---A-TCGTCGGAAC--CCCA-AT--GCC-GTCGGTCA-GGTT----CTC
* * * * * *** **** * * * *
6863 TTGTGAGGTATTG-TCTGCT-CTGG-CCCCCTG-GC-CTCACGGTTTTGTCCTACAAAAGGCACC
619 -TG-G-CG-A-TGCTCCGGTGATGGTGCCCC-GAGCGAAAAAAAATGTG-GC-AC--CA-GCACA
* ** * ** * * * * *
6923 T-CACGAGGCGGAG-ATGGTGTGAACCCTTTTATACCC-CAGGAACC-TTCCTATTATGTTCGAT
673 TGCTCGA-GCCCAGCA---TGTGCACCC--GCA-ACCCTC-GG-TCCAGTCC---GATCTTAGA-
* * * * * * * * * * *
6984 GTGGGATTCAGGACTCCCCCTTAGGTCCGTGAGACTAGCACCCATCGTACACCATGTGCGCATAC
725 CTGGGAAT--GAACT----C-TA--TGC-TTAGACTGGGA---AT-GAACTCCGTATGC-C-TA-
** * * * * * ** ** ** * * * *** * *
7049 CCCTCAGGCCCCCCAATCG-TCAGAAC-CCCAATGCCGTCGGTCAG-GTTCTCGACGATGCTCAG
773 -AGTCA-ACCCACGAAACGAGC-GTGCGGGCGCT-CAGCCGGCCAGAG-GGGC-AGGATGCGCA-
** * **** * * *
7111 ACGATGGTGGCTCGGGCAAAAAAAAATACGACACCAGCACATGCCCGAGC--CCAGCAT-GTGC-
831 A-GCCGG-GGATC-GGC-----CGGGT-C--C-CC--CTCA-G--CGTGCTACC-G-ATCCTGCT
* * *
7172 ACCCGCAACCCTTAATCTGATCC
877 A-CCGCAACCCTCAGTCTGGTCC
* ** ** * * *
7195 GATCTTACACTGAAAATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGCGTGC--G-GGC-
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGCG
* * * ** **
7256 -GCTC-A-GTCGGCCAGA-AGG-GTAGGATGCGAAAGTCAG-GGATCGACCGGGTCCCCCTCAGC
66 AGCACTACG-CGGCCAGAGAGGCG--GGATGCGCAAG-CCGTGGATCGATAGGGT---GGT-AG-
* * * *** ** * * ** **
7315 GT--G-CT-GCCA-ATCATGC-TACCGCAACCCTCGGTCCGAT-CCGATCTTAGACTGGGAATG-
122 GTGGGTTTAGGCACATC-TTCATATTTCTGCCAT--G-CCAATGCC-AT-TTTTA-T-GGCTTGT
* * * ** ** ** * * * * *
7372 AACTCCGTATAGCTAA--GCCAACAGACAAAACGAGCGGGCGGGCGGGCGGGCACTACTC-CGGC
179 AAATTC--ATA-C-AATGGTC--C---C-TTA--AGC---C-TTC--ATGTGAAGT-TTCATGGC
* ** ** * * ** ** * *** ** *
7434 CAGA-GAGGCGGGATACGCA---AGC-CG-TGGATCGACAGGGTGGTAGGTCGGTTT-AGGCA-C
225 AAGACGACTC-GTTTTC-TATTTTTCACGAT-TTTTGA-AACTTTTTA---CGGTTTGA-G-ATT
* * * ** * * *** ** * * *
7491 ATCTTCAAATTTCTACTATGCCAATGCCATTTTTATGGCGTGTAAA-TTCATACA-ATGGTCCCT
281 TTTTTAAAATTT-TTTTA-G--AA-G-GAGTTTT-T-GC-CCCAAACTTGGTAGACGTGAT-CCT
* * * ** ** *
7554 TAAGCCTTCATGTGAAGTTGAATGGCAAG-ACAACTCATTTTCTATTGGTCATGATTTTGGAAAC
336 T--G---T-AT-T---TTTG-TTGGCATGCACAA-AAAAATTC-A---G-C-T-A-----AAAAC
** * * * * * ** * ** *
7618 TTTTTACG-GTTCAAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTACA
377 --TCGAAGTGTACAGGATTTTGTGACCA---TTTGA-AAAAAG---TGTCCCC--A-TT--T---
* *** ** * *** *
7682 CATGATC-CTGT-ATTTTTGTTGGCATGCACAA----AAAAAT-TCAGTTAA-AAACTTGAA--G
425 CA-GA-CACTTTAATGGCTACTGGCA-GCA-AACCTGTAAAATCTCA---AATGCTCTTTAAGGG
* *** * * ** ** * ** ******* * * * *
7737 TGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGATACTTTAATGG-CTACTAG
483 GGTGTGAG-TTCT-CGA-GGTTTG-ATGAGGGAT-AGGGGGCCA-ATA---TAAGGGCCAAGTAC
* **** * * * ** ****** **** * * *
7801 CAGCAAACCTAAAAAATATGAAATGTTCTTTA-AGGGTGTGTGAGTTCTCAAGGTTTGATGAGGG
539 CAGC--ACCCATCGCACAT--CATGTGC-GCACACCCCCCG-GCCCCCCCAA---TCG-T--CGG
* * * * * ** * **
7865 ATAGGGGGCCAATATAAGGGTCAAGTACCAGTACCCATCGCACATCATGTGCGCACT-CCCCACC
592 A-A----CCCCA-AT----G-C-CGT--CGGT---CA-GGTTC-TC-TG-GCG-A-TGCTCC-GG
* *** * **** * * * *
7929 CGA--CCCCCCCAATTGCCGGAACCCCAATGCCGTCAATCAGGTTCTCCGACGATGATGCCCCG-
633 TGATGGTGCCCCGA--G-C-GAAAAAAAATG-TGGC-ACCA-G-----C-AC----ATG-CTCGA
* ** ** ** * * ** *
7991 GCCAAAAAAAAATGT-CACACCAGCACATGCCCAAGCCCAGCATGTGCACCCA-C-AACCCTCGG
680 GCC----CAGCATGTGCAC-CC-GCA-A--CCCTCGGTC--CA-GT---CCGATCTTAGACTGGG
*** ** * * * *
8053 TCCGGTC-CGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCAT
730 AATGAACTCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * * * *
8116 GTGGGCGCTCAGCCAGCCAGAGAGGCAAGATGCACAAGGCTGGGATCGGTCAGGT-CCCTTCAGC
795 GCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGC
** * * * * *
8180 GTGCTGTCGATCCTACTACCACAACCTTCGGT-TCGGTCT
860 GTGCTACCGATCCTGCTACCGCAACCCTCAGTCT-GGTCC
* * * * *
8219 GATCTTAGATTGGGAATGAACTCCGTATGCTTAAGCCAACCGACGAAACGAGCAGACGGGCGG-G
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGCG
* * * * *
8283 TGGCCACTATGCCGGCCAGAGAGGCGAGATGCACAAGCTGTTGG-TCGATA-----G--GGT-GG
66 -AG-CACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGG
* * *
8339 --TAGGCACATCTTCATGTTTTTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAAT
127 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * **
8402 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACTCGTTGTCTATTTTTCATAATTTT
192 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* ** *
8467 TGAAGCTTTTTACGGTTTGAGAATTTTTTTAAAATTTTTTTAGAAGGAGTTTCAGCCCTAAACTT
257 TGAAACTTTTTACGGTTTGAG-ATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAACTT
* * ** * * * *
8532 GGTAGACATGATCCTTGTATTTTTGTCGATATGCACAAAAACATTTAGGTAAAAACTTGAAGTGT
321 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
8597 ACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
386 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* ** *
8662 AAACCTATAAAATCTCAAATGCTCTTCCAGGGGGTGTGAGTTCTCAAGGTTTGATGA-GGATAGG
451 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
8726 GGGCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGTGCCCACACCACCCC-GCCCC
516 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCC
* * * * *
8790 TCCAATCATCGGAGCCCCAATGCCGCCGGTCAGGTTCTC---C---G----GG-GATGGTGGCCC
580 CCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCC
*** * *
8844 GAGCGAAAAAAAATACAGCACCAGCACATGC-CTGAGCCTAGCATGTGCACCCGTAACCCTCGGT
645 GAGCGAAAAAAAATGTGGCACCAGCACATGCTC-GAGCCCAGCATGTGCACCCGCAACCCTCGGT
* * * *
8908 CAAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGTACGTCT
709 CCAGTCCGATCTTAGACTGGGAATGAACT-C-TATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
8972 AAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGA-GGGTAGGATACACAAGCCGG
772 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGG
* * ** * * * *
9036 GAATCGGCCAGGTCCCCCTCTA-CGTGCTATTGATCCTACTACCACAACCTTCATTCTGGTCC
837 GGATCGGCCGGGTCCCCCTC-AGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCC
* * *
9098 GATCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAGCGGGC--G-GGCG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGCG
* ** * *
9160 -G------GCGGGCA-CTA--C--G-T-CG--A-CCTTGGATCGATAGGGTGGTAGGTGGGCTTA
66 AGCACTACGCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
9208 GGGACATCTTCATATTTCTACCATGCC-ATGCCATTTTTGTGGCTTCTAAATTCATACAATGGTC
131 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
9272 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * **
9337 ACTTTTTACCG-TTCAGGATTTTTTAAAAATTTTTTTAGAAGGACTTTGGGCCCCAAACTTGGTA
261 ACTTTTTACGGTTTGA-GATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAACTTGGTA
* *
9401 AACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* * * *
9466 GATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAAACCCTTTAATGGCTAGTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
9531 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAAGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
9596 CAATATAAGGGCCAAGTACCAGCACCCATCGAATATCATGTGTGCACACCCCCACCCGGCCCCCC
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC-CCCGGCCCCCC
* * *
9661 CAATCGTCGGAACTCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTTCGGTGATGGTGCCCCTG
582 CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCC-G
* * *
9726 -GTGAAAATAAATGTGGCACCAGCACATGC-CTGAGCCCAGCATGTGCACCCGCAACCCTCAGTC
646 AGCGAAAAAAAATGTGGCACCAGCACATGCTC-GAGCCCAGCATGTGCACCCGCAACCCTCGGTC
* * *
9789 CGGTCCAATCTTAGA-TTGG---G-A----ATG---A-A-T-----T--A-T--GTATGCCTAAG
710 CAGTCCGATCTTAGACTGGGAATGAACTCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
9830 TCAACCCACGAAATGAGTGTGCGGGCGCTCGGCCGGCCATAGGGGCAGGATACGCAAGTCGGGGA
775 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
** * ** * * * * *
9895 TCGGCCCAG-CCCAACTCAGCGTGCTGTCGATCCTACTGCCCCAACCCTTAGTCTGGTCT
840 TCGGCCGGGTCCC-CCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCC
* * * * ** * *
9954 GATCTTAGACTAGGAACGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGATGGTGGGGGGC-
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGCG
** *
10018 AGGCACTGTGCCGGCCAGAGAGGCGGGATGCGCAAGCAGTGGATCGA-AGGGTGGTAGGTGGGTT
66 A-GCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** *
10082 TAGGCACATCTTCATATTTCTGCCACACAAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
10147 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTTACAATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
10212 AAACTTTTTACGGTTT-AGGATTTTTTT-AAATTTTTTTCAGAATGAGTTTTGGCCCCAAACTTG
259 AAACTTTTTACGGTTTGA-GATTTTTTTAAAATTTTTTT-AGAAGGAGTTTTTGCCCCAAACTTG
* * *
10275 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCTCAAAAAAATTCAGCTAAAAACTCAAAGTGTA
322 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
10340 CAGGATTTTGTGACCATTTGAAAAAAGT-TCCCCATTTCAGACACTTTAATGGCTACTGGCAACA
387 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
10404 AACCTGTAAAATCCCAAATACTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGCG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
** * * *
10469 GGCCAATATAAATGACAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * *
10534 CAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CGA-----C---AATGGTGGCCTGA
582 CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGA
* * * * * *
10588 --GAAAAAAAATGCGGCACCAGCACATGCTCAAG-CCAACATGTGCACCTGCAACCCTTGGTCCG
647 GCGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCA
10650 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
712 GTCCGATCTTAGACTGGGAATGAACT-C-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * ***
10715 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTAGAGGGGCAAGATGCGCAAGCCAAAGA
775 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* ** * ** * * *
10780 TCGACCGGGTCCCCCTCAGTATGTTGTCGATCCTGCTACCACAACCCTCGGTCCGGTCC
840 TCGGCCGGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCC
* * * * *
10839 AATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCTAACCGACGAAACGAGCGGGCGGGTGG-G
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGCG
* * *
10903 CAGTCACTACATCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 -AG-CACTAC-GCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* **
10968 TTAGGCACATCTTCATATTTCTACCATGCCAATGTGATTTTTATGGCTTGTAAATTCATACAATG
128 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
11033 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTGTT
193 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
11098 AAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTTGTCCCAAACTTGG
258 GAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAACTTGG
* * * * *
11162 TAGACGTGATCCTTGTATTTTTATTAGCATGCACAAAACAATTCAGCTAAAACCTCAAAGTGTAC
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
11227 AGGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCAA
388 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* ** * * * *
11292 ACCTGTAAATTCTCAAATGCTCTTTAAGAAGGTGTGAGTTCTTGAGGTTTGATGAGGGACAAGTG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* **
11357 GCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGAACGCACACCCCCC-GCCCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * * * *
11421 AATCGCCGAAACCCCAATGCCGTCGGTCAAGTTCTCTGGCGATGCTCCGGCGATGGTGGCCCGAG
583 AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGAG
* * * *
11486 CG-AAAAAAATGCT-TCACCAGCACATGCCCGAGCCTAGCATGTGCA-CC-CATACCTCTCAGT-
648 CGAAAAAAAATG-TGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCA-ACC-CTCGGTC
* * * *
11546 -ATGATCCGATCTTAGACTGGGAATAAACCCCATATGCTAAGACTGGGAATGAACTCTGTATGCC
710 CA-G-TCCGATCTTAGACTGGGAATGAA-CTC-TATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** * *
11610 TAAGTCAACCCATGAAACGAGCGTGTAGGCGCTCGGCCGGGCAGAAGGGG-AGGATGCGCAAGCC
771 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCAGGATGCGCAAGCC
* * * * * * * * * *
11674 AGGGATCGGTCGTGTCCCCCTCAGCATGCTGCCAATCCTGTTGCTGCAACCCTCAGT-TCAGTCC
835 GGGGATCGGCCGGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCT-GGTCC
* * * *
11738 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGAGCGGCC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGG-C
* * * * * *
11803 GGGCAATACGCCGGCCAGAGAGACGGGATGCGCAGGCCATGGATCGATAGCGTGGTAGGTGGGTT
65 GAGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
11868 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
11933 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTT
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** * * *
11998 AAACTTTTTACTATTTGGGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTAGT
259 AAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAACTTGGT
* * * * *
12063 AGACATGATCCTTGTATTTTTGTTCGCATGCACAAAAAAAGTCAGCTAAAAACTCGTAGTGTAAA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
12128 GGGTTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
12193 CCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
12258 CAAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACACACCCCCCGGCCCCCCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCC
* * * *
12323 AATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGTTTCGACGATGCTCTGGCGAT
583 AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT----C--TG----G-CGATGCTCCGGTGAT
* * * * *
12388 GGTGCCCCAAGCG-AAAAAAATGTGGCACCAACACATGCTCAAGCCCAGCATGTGCACCTGTAAC
637 GGTGCCCCGAGCGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAAC
* *
12452 CCTCGGTCCAGTCCGATCTTAGACTGAGAATGAACTCCTATGCTTAGACTGGGAACGAACTCCGT
702 CCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT-CTATGCTTAGACTGGGAATGAACTCCGT
* * **
12517 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGATGCAGGATGCGCA
766 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
** * * *** * * *
12582 AGTTGAGGATGGGCCGGGTCCCCCTCAGCGTGCTGTTGATCCTGCTACTGCAGCCCTC-GATCCG
831 AGCCGGGGATCGGCCGGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAG-TCTG
*
12646 GTTC
895 GTCC
* * *
12650 GATCTTATACTGGGAATGAACTCCGTATGCATAAGCCAACCGATGAAACGA----GC-----G-G
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGCG
*
12705 -GCACTACGTTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 AGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
12769 AGGCACATCTTCATATTTCTACCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
12834 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATATTTCACGATTTTTAA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * * *
12899 AACTTTTTACGGTTCGGGATTTCTTTAAAATTTTTTCAGAGGGAG-TTTTGTTCCCAAACTTGGT
260 AACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTG-CCCCAAACTTGGT
* * * *
12963 AGACGTGATCCTTGTATTTTTATTGGCTTGCATAAAAAAATTCAGCTAAAAACTGGAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
13028 GGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
13093 CATGTAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** *
13158 CCAATATAAGGGCCAAGTACCAGCATGCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCA
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCA
* * * * * * * *
13223 ATCG-CTGGAACCCCAATGCCGCCGGTCATGTTCTCCGACGATGCTCCGGAGTTGGTGGCCCGGG
584 ATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGAG
*** * **
13287 CGAAAAAAAATGCATCACCAGCACATGCTCGAGCCTAGCATGTGCACCCATAACCCTCGGTCCAG
648 CGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAG
***
13352 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAAAACTAAGT
713 TCCGATCTTAGACTGGGAATGAACT-C-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * **
13417 GAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTTGGGGAT
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
13482 C
841 C
13483 AATCAGGTCA
Statistics
Matches: 10179, Mismatches: 1737, Indels: 1319
0.77 0.13 0.10
Matches are distributed among these distances:
855 49 0.00
856 113 0.01
857 8 0.00
858 2 0.00
859 42 0.00
860 32 0.00
861 3 0.00
862 10 0.00
863 1 0.00
864 6 0.00
865 211 0.02
866 159 0.02
867 36 0.00
868 12 0.00
869 46 0.00
870 170 0.02
871 278 0.03
872 184 0.02
873 267 0.03
874 199 0.02
875 434 0.04
876 345 0.03
877 253 0.02
878 451 0.04
879 590 0.06
880 420 0.04
881 40 0.00
882 5 0.00
883 40 0.00
884 105 0.01
885 161 0.02
886 206 0.02
887 312 0.03
888 35 0.00
889 107 0.01
890 99 0.01
891 44 0.00
892 13 0.00
893 28 0.00
894 56 0.01
895 45 0.00
896 51 0.01
897 378 0.04
898 86 0.01
899 528 0.05
900 1320 0.13
901 336 0.03
902 338 0.03
903 82 0.01
904 11 0.00
905 16 0.00
906 11 0.00
907 3 0.00
908 4 0.00
909 3 0.00
911 4 0.00
912 176 0.02
913 89 0.01
914 5 0.00
915 5 0.00
916 4 0.00
917 4 0.00
918 4 0.00
919 2 0.00
920 4 0.00
921 5 0.00
922 4 0.00
923 3 0.00
925 1 0.00
926 2 0.00
927 4 0.00
928 8 0.00
929 7 0.00
930 4 0.00
931 10 0.00
932 12 0.00
934 8 0.00
936 2 0.00
937 10 0.00
938 2 0.00
939 1 0.00
940 7 0.00
941 6 0.00
943 9 0.00
944 6 0.00
946 10 0.00
947 6 0.00
948 10 0.00
949 7 0.00
950 3 0.00
951 2 0.00
952 7 0.00
953 19 0.00
954 16 0.00
955 6 0.00
956 8 0.00
957 18 0.00
958 18 0.00
959 9 0.00
960 2 0.00
961 3 0.00
962 10 0.00
963 2 0.00
965 4 0.00
966 5 0.00
967 3 0.00
968 44 0.00
969 23 0.00
970 11 0.00
971 7 0.00
972 7 0.00
973 4 0.00
974 8 0.00
975 9 0.00
976 69 0.01
977 7 0.00
978 4 0.00
981 2 0.00
982 7 0.00
983 7 0.00
984 3 0.00
986 2 0.00
987 8 0.00
988 7 0.00
989 3 0.00
990 13 0.00
991 18 0.00
992 6 0.00
993 12 0.00
994 6 0.00
995 5 0.00
996 6 0.00
997 5 0.00
998 9 0.00
999 4 0.00
1000 15 0.00
1001 21 0.00
1002 3 0.00
1003 8 0.00
1004 6 0.00
1005 2 0.00
1007 3 0.00
1008 7 0.00
1009 10 0.00
1010 2 0.00
1013 4 0.00
1014 2 0.00
1015 6 0.00
1016 5 0.00
1017 5 0.00
1018 3 0.00
1019 5 0.00
1020 6 0.00
1021 10 0.00
1022 19 0.00
1023 10 0.00
1024 60 0.01
1025 6 0.00
1026 3 0.00
1027 6 0.00
1028 2 0.00
1029 2 0.00
1030 8 0.00
1031 3 0.00
1032 22 0.00
1033 9 0.00
1034 2 0.00
1035 9 0.00
1036 8 0.00
1037 10 0.00
1038 17 0.00
1039 15 0.00
1040 9 0.00
1041 6 0.00
1042 11 0.00
1043 28 0.00
1044 15 0.00
1045 4 0.00
1046 4 0.00
1047 6 0.00
1048 22 0.00
1049 2 0.00
1050 1 0.00
1051 7 0.00
1052 8 0.00
1053 6 0.00
1054 2 0.00
1056 2 0.00
1057 3 0.00
1061 3 0.00
1062 7 0.00
1063 9 0.00
1064 7 0.00
1065 2 0.00
1066 1 0.00
1067 2 0.00
1070 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (898 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGCG
AGCACTACGCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAAT
CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGAGCGA
AAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCC
GATCTTAGACTGGGAATGAACTCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCC
GGGTCCCCCTCAGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCC
Found at i:3287 original size:15 final size:14
Alignment explanation
Indices: 3267--3297 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
3257 CACACCACCC
3267 CGGAACCCCAATTGT
1 CGGAACCCCAA-TGT
3282 CGGAACCCCAATGT
1 CGGAACCCCAATGT
3296 CG
1 CG
3298 CCGGTCAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.26, C:0.35, G:0.23, T:0.16
Consensus pattern (14 bp):
CGGAACCCCAATGT
Found at i:6073 original size:26 final size:26
Alignment explanation
Indices: 6037--6089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6027 CCGGTCCGAT
6037 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
6063 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
6089 C
1 C
6090 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:10686 original size:26 final size:26
Alignment explanation
Indices: 10657--10709 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10647 CCGGTCCGAT
10657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10683 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10709 C
1 C
10710 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11607 original size:26 final size:27
Alignment explanation
Indices: 11559--11613 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
11549 ATCCGATCTT
11559 AGACTGGGAATAAACCCCATATG-CTA
1 AGACTGGGAATAAACCCCATATGCCTA
* * **
11585 AGACTGGGAATGAACTCTGTATGCCTA
1 AGACTGGGAATAAACCCCATATGCCTA
11612 AG
1 AG
11614 TCAACCCATG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (27 bp):
AGACTGGGAATAAACCCCATATGCCTA
Found at i:12511 original size:25 final size:26
Alignment explanation
Indices: 12469--12520 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12459 CCAGTCCGAT
*
12469 CTTAGACTGAGAATGAACTCC-TATG
1 CTTAGACTGAGAACGAACTCCGTATG
*
12494 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGAGAACGAACTCCGTATG
12520 C
1 C
12521 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAACGAACTCCGTATG
Found at i:13902 original size:442 final size:447
Alignment explanation
Indices: 13068--13925 Score: 1187
Period size: 442 Copynumber: 1.9 Consensus size: 447
13058 CCATTTCAGA
13068 CACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTC
* * * ** **
13133 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATGCATCGCACATCAT
66 TCGAGATTTGACGAGGGATACGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** *
13198 GTGCGCACACCCCCTGGCCCCCCCAATCGCTGGAACCCCAATGCCGCCGGTCATGTTCTCCGACG
131 GTGCGCACACCCCCTGGCCCCCCCAATCGCTGGAACCCCAATGCCGCCAATCAGGTTCTCC-ACG
** * *
13263 ATGCTCCGGAGTTGGTGGCCCGGGCGAAAAAAAATGCATCACCAGCACATGCTCGAGCCTAGCAT
195 A-GCT-C-GAG-TGGTGGCCCGACCAAAAAAAAATGCATCACCAGCACAAGCTCGAGCCTAGCAT
* *
13328 GTGCACCCATAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
256 GTGCACCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAAACTG
* *
13393 GGAATGAACTCCGTAAAACTAAGTGAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
321 GGAATGAACTCCGTAAAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAG
**
13458 GGGCAGGATGCACAAGTTGGGGATCAATCAGGTCATCCTCTGCGTGCTGCCGATCCTGTTAC
386 GGGCAGGATGCACAAGCCGGGGATCAATCAGGTCATCCTCTGCGTGCTGCCGATCCTGTTAC
* * * *
13520 CACTTTAATGGCTACTGGCAGCAAACTTGTAGAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTC
13585 TCGAGATTTGACGAGGGATACGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
66 TCGAGATTTGACGAGGGATACGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
13650 GTGCGCACACCCTCTCT-GTCCCCCGAATCGTTGGAACCCCAATGCCGCCAATCAGGTTCT-C-C
131 GTGCGCACACCC-C-CTGGCCCCCCCAATCGCTGGAACCCCAATGCCGCCAATCAGGTTCTCCAC
* * *
13712 G-G-T-GA-TGGTGTCCCGACCAAAAAAAAATTCGA-CACCAGCACAAGC-CTGAGTCTAGCATG
194 GAGCTCGAGTGGTGGCCCGACCAAAAAAAAATGC-ATCACCAGCACAAGCTC-GAGCCTAGCATG
* * * * *
13771 TGCACCCGTAACCCTCGATCCGGTCCGATGTTAGACTGGGATTGAACTCCGTATGCTTAAACTAG
257 TGCACCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAAACT-G
** * * *
13836 GG-ATGAACTCCGTAAGCCTGAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCTGGCCAGAG
321 GGAATGAACTCCGTAAAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAG
*
13900 GGGCAGGATGCGCAAGCCGGGGATCA
386 GGGCAGGATGCACAAGCCGGGGATCA
13926 GCCGGTTCCC
Statistics
Matches: 360, Mismatches: 41, Indels: 20
0.86 0.10 0.05
Matches are distributed among these distances:
441 1 0.00
442 177 0.49
443 4 0.01
444 2 0.01
447 1 0.00
448 1 0.00
450 2 0.01
452 132 0.37
453 38 0.11
454 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (447 bp):
CACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTC
TCGAGATTTGACGAGGGATACGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCTGGCCCCCCCAATCGCTGGAACCCCAATGCCGCCAATCAGGTTCTCCACGA
GCTCGAGTGGTGGCCCGACCAAAAAAAAATGCATCACCAGCACAAGCTCGAGCCTAGCATGTGCA
CCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGGAAT
GAACTCCGTAAAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCA
GGATGCACAAGCCGGGGATCAATCAGGTCATCCTCTGCGTGCTGCCGATCCTGTTAC
Found at i:15414 original size:26 final size:26
Alignment explanation
Indices: 15376--15428 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15366 GCGGTCCGAT
*
15376 CTTAGACTGGGAACGAACTCTGTATG
1 CTTAGACTAGGAACGAACTCTGTATG
* *
15402 CTTAGACTAGGAATGAACTCTTTATG
1 CTTAGACTAGGAACGAACTCTGTATG
15428 C
1 C
15429 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCTGTATG
Found at i:16302 original size:26 final size:27
Alignment explanation
Indices: 16266--16316 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
16256 GATCTTAGAT
16266 TGGGAATGAACTCTGTATG-CTAAGAC
1 TGGGAATGAACTCTGTATGCCTAAGAC
16292 TGGGAATGAACTCTGTATGCCTAAG
1 TGGGAATGAACTCTGTATGCCTAAG
16317 TCAACCTACG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (27 bp):
TGGGAATGAACTCTGTATGCCTAAGAC
Found at i:17192 original size:26 final size:26
Alignment explanation
Indices: 17141--17193 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17131 TCGATTTGAT
* *
17141 CTTATACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
17167 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17193 C
1 C
17194 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:18066 original size:26 final size:26
Alignment explanation
Indices: 18037--18089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18027 CCAATCCGAT
18037 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
18063 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
18089 C
1 C
18090 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:18237 original size:896 final size:886
Alignment explanation
Indices: 14929--20109 Score: 5957
Period size: 882 Copynumber: 5.8 Consensus size: 886
14919 ACCAACCTAC
* * * *
14929 GATTTTTAAAACTTTTAACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
1 GATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAG--TTGGCCCCA
* * * * * *
14994 AACTAGTTAGATGTAATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTGAAAACTCGA
64 AACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
15059 AGTGTAAAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGTTACTG
128 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
15124 GCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
193 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
15189 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCA--CA---CCC
258 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCACGGCCC
* *
15249 CCCAATCGTCGGAACCCCAAT---GCC-GTCA-G-TCACT-----TTCTCCGACGATGGTGCCCT
323 CCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGT-CCC-
* * * * * *
15303 GGGTGAAAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCACCCGTAACCCTCGATGC
386 -GG-GAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGATCC
* ** * **
15368 GGTCCGATCTTAGACTGGGAACGAACTCTGTATGCTTAGACTAGGAATGAACTCTTTATGCCTAA
449 GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
15433 GTC-AACCTACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGTGCAAGCCGAG
514 GTCAAACC-ACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCAGGATGCGCAAGCCGGG
* * * * * * ****
15497 GATCGGCCGGGTCCCCTTCAGTGTGCTATCGATCTTGCTGCCAC-AACCCTCAATCTTGTTTGGT
577 GATCGGCCGAGTCCCCCTCAGCGTGCTATCGATCCTGCTACC-CTAACCCTCAATC-CGTCCAAT
* * * *
15561 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC-AACGAAAAGAGTGGGCAGGCGGGCGA
640 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAA-GAAACGAG-CGGCGGGCGGGCG-
* * * * * *
15625 GCCCTACGTCAGTCAGAGAGGCTGGATGCG-TAAGCCATGGATCGATAAGGTGGTTGGTGGGTTT
702 GCACTACGTCGGCCAGAGAGGCGGGATGCGCT-AGCCATGGATCGATAGGGTGGTAGGTGGGTTT
* **
15689 AGGCACATCTTCATATTTTTTCCATGCTAACACCATTTTTATGGCTTGTAAATTCATACAATGGT
766 AGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * *
15754 CCCTTAAGCCTTCATGCGAAGTCTCATGGCAAGATGACTC-ATTTTTTATTTTTCAC
831 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGA-TTTCTATTTTTCAT
* * *
15810 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCA
1 GATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAG--TTGGCCCCA
*
15875 AACTTGGTAGATGTGATCCTTGTATTTTTTTGGGCATGCACAAAAAAAATTCAGCTAAAAACTCG
64 AACTTGGTAGACGTGATCCTTGTATTTTTTT-GGCATGCAC-AAAAAAATTCAGCTAAAAACTCG
15940 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
127 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
16005 GGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
192 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
16070 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA--CA---CC
257 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCACGGCC
* * * * *
16130 CCCCAATCGTCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGCC--C--TGG--GC
322 CCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCT-CCGACGATGGTCCC
* * * ** * * *
16189 -GAAAAAAAATACGGCACCAGTACATGCCTAAGCCCAGCATGTGCACTCGTAACCCTTGATTCGG
386 GGGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGATCCGG
* ** * *
16253 TCCGATCTTAGATTGGGAATGAACTCTGTATGCTAAGACTGGGAATGAACTCTGTATGCCTAAGT
451 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
16318 C-AACCTACGAAACAAACATGC-GGCACTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGA
516 CAAACC-ACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * * * * *
16381 CCGGCCTG-GTCCCCCTCAGCGTGCTGTCGATCTTGCTATCATAACCCTCAATCCTGTCTAGTCT
579 TCGGCC-GAGTCCCCCTCAGCGTGCTATCGATCCTGCTACCCTAACCCTCAATCC-GTCCAATCT
* *
16445 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAATC-AACGAAA--AG-AGCGGGCGGGCGGGCA
642 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAA-GAAACGAGCGGCGGGCGGGC-GGCA
* ** **
16506 CTACGTCGGTCAGAGAGGTTGGATGCG-TAAGCCATGGATCGATAGGCCGGTTA-GTGGGTTTAG
705 CTACGTCGGCCAGAGAGGCGGGATGCGCT-AGCCATGGATCGATAGGGTGG-TAGGTGGGTTTAG
**
16569 GCACATCTTCATATTTTTTTCCATGCCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTC
768 GCACATCTTCATA-TTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
16634 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC-ATTTTCTATTTTTCAT
832 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGA-TTTCTATTTTTCAT
* *
16689 GATTTTTGAAACTTTTTACGG-TTCAGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCC
1 GATTTTTGAAACTTTTTACGGTTTGA-GATTTTTTTAAAATTTTTTCAGAAGGA--GTTGGCCCC
*
16753 AAACTTGGTAGACATGATCCTTGTATTTTTTTGGGCATGCACAAAAAAATTCAGCTAAAAACTCG
63 AAACTTGGTAGACGTGATCCTTGTATTTTTTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
16818 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACCCCTTAATGCCTACT
127 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * *
16883 GGCAGCAAACCTATAAAATCTTAAATGCTCTTTAAGCGGGTGTGAGTTCTCAAGGTTTGATAAGG
192 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * ** * *
16948 GATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCACCGCACATCATGTATGTA---A----A
257 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCACGGCC
** * * * * *
17006 CCCC---C-TCGGCCCCCCAATGCCGTCAGTCAGGTTCTCTGACGATGCTTCGGCGATGGTGCCC
322 CCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGT-CCC
* * *
17067 TGGGTGAAAATAAA-GTGGCACCTGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGT
386 --GG-GAAAA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGAT
* * ** * * *
17131 TCGATTTGATCTTATACTAGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCT
447 CCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
17196 AAGTCAACCCACGAAACGAGCGTGCGGGTC-CTCAACCGACCAGAGGGGTAGGATGTGCAAGCCA
512 AAGTCAAACCACGAAACGAGCGTGCGGG-CGCTCAGCCG-CCAGAGGGGCAGGATGCGCAAGCCG
* * * * ** * * * *
17260 GGGATCAGCCGAGTTCCCCTCTGCATGCTGCCGATCCTGCTATCGTAACCCAT-GATCCGGTCCG
575 GGGATCGGCCGAGTCCCCCTCAGCGTGCTATCGATCCTGCTACCCTAACCC-TCAATCC-GTCCA
* * * *
17324 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCGAAGAAATGAGCGGACGGGTGGGCA
638 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGG-CGGGCGGGC-
* *
17389 GGCACTACGTCGGCCAGAGAGGCGGGATGCGCTAGTCGTGGATCGATAGGGTGGTAGGTGGGTTT
701 GGCACTACGTCGGCCAGAGAGGCGGGATGCGCTAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
*
17454 AGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATCCATACAATGGT
766 AGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
17519 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGATTTCTATTTTTCAC
831 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGATTTCTATTTTTCAT
* * * *
17575 GATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAATTTTTTTCTGAGGGAG-T-ACCCCAAA
1 GATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTGGCCCC-AA
* *
17638 AGCTTTGTAGACGTGATCATTGTATTTTTGTTGGCATGCAGC-AAAAAATTCAGCTAAAAACTCG
65 A-CTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCG
* * *
17702 -AGTGTACAAGATTTTGTGACAATTTGAACAAAAGTGT-CCCATTTTAGACACTTTAATGGCTAC
127 AAGTGTACAGGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
17765 TGGGCAGCAAACCTGTAAAATCTCAAATTGCTCTTTAAGGGGGGTGTGAGTTCCTCGAGGTTTCA
191 T-GGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAA-GGGGGTGTGAGTT-CTCGAGGTTT-G
*
17830 ATGAGGGATAAGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGCGCAGCC
251 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CC
* * *
17894 TACTGGCCCCCCTAATCCGTCGGAACGCCAATGCCACCGGTCAGGTTCT-TGGCGATGCTGCCGA
315 CAC-GGCCCCCC-AAT-CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCT-CCGA
* * **
17958 CGATGGTTCCCGGGCAAAAAATGCGGCACC-GCA-ATG-CCGAGCCCAGCATTTGCACCCATAAC
376 CGATGG-TCCCGGGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAAC
** * * *
18020 CCTTGATCCAATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCG
440 CCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
* * *
18085 TATGCCTAAGTCAAACCACGAAACGAGCGTGGGGGCGCTCAGCCAGCCAGAGGGGTAAGATGCGC
505 TATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAGGGGCAGGATGCGC
* * * **
18150 AAGCCGGGGGTCGGCCGAGTCCCCCTTAGCGTGCTATCGATCCTGCTGCCCTAACCCTCGGTCCG
569 AAGCCGGGGATCGGCCGAGTCCCCCTCAGCGTGCTATCGATCCTGCTACCCTAACCCTCAATCCG
* * * *
18215 ATCCAATCTTAGA-TGGGGAATGAACTCTGTATGCCTAAGCCAACCTATGAAACAAGCAGGCGGG
634 -TCCAATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGC-GGCGGG
** * * * *
18279 TTGGCGAGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGT
696 CGGGCG-GCACTACGTCGGCCAGAGAGGCGGGATGCGCTAGCCATGGATCGATAGGGTGGTAGGT
* *
18344 -TGTTTAAGGCACATCTTCATATTTTTGT-CGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
760 GGGTTT-AGGCACATCTTCATATTTTT-TCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
18407 ACAATGGTCCCTTAGGCCTTCATGTGAAGTTTCATGCCAAGACGACTTGTTTTCTATGTTTCAT
823 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGATTTCTATTTTTCAT
* *
18471 GATTTTTGAAACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
1 GATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAG--TTGGCCCCA
* *
18536 AACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGA
64 AACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
18601 AGTGTACAGGGTTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
128 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
18666 GCAGCAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG-TTGATGAGGG
193 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
18730 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACCCCCCGGCC
258 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CCCACGGCC
* * * * *
18795 ACCCTAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CTAGTGATGATGT
322 -CCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGA-CGATG--GT
* * *
18859 CCCGGGAAAAAAAAAATGGGGCACCAGCACATGCCCGAGCCTAGCATAG-GCACTCGCAACCCTC
383 CCCGGG---AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT-GTGCACCCGCAACCCT-
* * * *
18923 GGTCCAGTCCGGTCTGGTCTGATCTTACACTGGGAATGAACTTCATGTGCTTAGACTGGGAATGA
443 --T-GA-TCCGGTC----C-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
* * * *
18988 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCAGCCGGAGGGGCAGG
499 ACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAG-CCGCCAGAGGGGCAGG
* * * ** * *
19053 ATGTGCAAGCCGGGGATCGGCAGGGTCCCCCTCAGCGTGCTGCCAATCCTACTACCGC-AACCCT
563 ATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCAGCGTGCTATCGATCCTGCTACC-CTAACCCT
*** * * * * *
19117 TGGTCCAGAT-CGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAATCGATGAAATGAGC
627 CAATCC-G-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGC
*
19181 GAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAAGCGGGATGCGC-AGGCCATGGATCGATAGGG
690 G-GCGGGCGGGC-GGCACTACGTCGGCCAGAGAGGCGGGATGCGCTA-GCCATGGATCGATAGGG
* * * * *
19245 TGGTAGGTGGGTTTAGGAACATCTTCATTTTTTTTGTCGTGCCAATGCCATTTTTATGGCCTGTA
752 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTT-CCATGCCAATGCCATTTTTATGGCTTGTA
* *
19310 AATTCATACAATGGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATT
816 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGATTTCTATT
19375 TTTCAT
881 TTTCAT
* * *
19381 GATTTTTGAAACCTTTTACGGTCTGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCA
1 GATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAG--TTGGCCCCA
* * *
19446 AACTTCGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAGCTCGA
64 AACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
19511 AGTGTACAGGATTTTGTGACTATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTG
128 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
19576 GTAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGG
193 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
19641 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCAG
258 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCGCA-CCCACGG
* * * * *
19706 CCCCCCTAATC-TCACGAACCCCAATGCCGCCGGTCAGATTCT-TCGGCGATGGTGCC--CCA-A
320 CCCCCC-AATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCT-GGCGATGCT-CCGACGATG
* * * *
19766 G---C-GAAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCACAACCCTCGA
381 GTCCCGGGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGA
* * * * * *
19827 TCTGGTCCGATCTTAGCCAGGGAATGAACTGCATATGCTTAGACTGGTAATGAACTCTGTATGCC
446 TCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
** *
19892 TAAGTCATCCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCA
511 TAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCAGAGGGGCAGGATGCGCAAGCCG
*** * * * * * *
19957 GGGATCGATTGATTCCCCCTCAGCGTGCTGCAT--ATCCTACTGCCCCAACCCTCAATCTGGTCT
575 GGGATCGGCCGAGTCCCCCTCAGCGTGCT--ATCGATCCTGCTACCCTAACCCTCAATC-CGTCC
* * * * * *
20020 AGTCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGTGCGGGTGGGCGAGC
637 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGC-GGCGGGCGGGC
*
20085 GGGCACTACGCCGGCCAGAGAGGCG
701 -GGCACTACGTCGGCCAGAGAGGCG
20110 TACACAAAAA
Statistics
Matches: 3747, Mismatches: 409, Indels: 277
0.85 0.09 0.06
Matches are distributed among these distances:
871 1 0.00
872 34 0.01
873 2 0.00
875 3 0.00
876 4 0.00
877 1 0.00
878 276 0.07
879 197 0.05
880 4 0.00
881 95 0.03
882 484 0.13
883 311 0.08
884 90 0.02
885 18 0.00
886 163 0.04
887 120 0.03
888 29 0.01
890 3 0.00
891 7 0.00
892 259 0.07
893 52 0.01
894 44 0.01
895 15 0.00
896 481 0.13
897 27 0.01
898 92 0.02
899 93 0.02
900 6 0.00
901 11 0.00
902 85 0.02
903 2 0.00
904 5 0.00
905 1 0.00
906 1 0.00
908 4 0.00
909 277 0.07
910 335 0.09
911 58 0.02
912 6 0.00
913 50 0.01
915 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
GATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCACGGCCCCCC
AATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTCCCGGGAA
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGATCCGGTCCGA
TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAC
CACGAAACGAGCGTGCGGGCGCTCAGCCGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCG
AGTCCCCCTCAGCGTGCTATCGATCCTGCTACCCTAACCCTCAATCCGTCCAATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGCGGGCGGGCGGCACTACGTCGGCC
AGAGAGGCGGGATGCGCTAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
GTGAAGTTTCATGGCAAGACGACTCGATTTCTATTTTTCAT
Found at i:22116 original size:26 final size:26
Alignment explanation
Indices: 22080--22155 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
22070 CGATCTTAGG
22080 CTGGGAATGAACTCTGTATGCCTACA
1 CTGGGAATGAACTCTGTATGCCTACA
* * *
22106 CTGGGAATGAACTCCGTATGCTTAGA
1 CTGGGAATGAACTCTGTATGCCTACA
* *
22132 TTGGGAATGAACTATGTATGCCTA
1 CTGGGAATGAACTCTGTATGCCTA
22156 AGTCAACCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTGGGAATGAACTCTGTATGCCTACA
Found at i:23015 original size:26 final size:26
Alignment explanation
Indices: 22979--23031 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22969 CCGATGTGAT
*
22979 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23005 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23031 C
1 C
23032 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23764 original size:14 final size:15
Alignment explanation
Indices: 23735--23764 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23725 ACCTCCCGGC
23735 CACCCCAATGGCCGT
1 CACCCCAATGGCCGT
23750 CACCCCAAT-GCCGT
1 CACCCCAATGGCCGT
23764 C
1 C
23765 GGTCAGGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.20, C:0.50, G:0.17, T:0.13
Consensus pattern (15 bp):
CACCCCAATGGCCGT
Found at i:25696 original size:26 final size:26
Alignment explanation
Indices: 25667--25717 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
25657 CGATTTGATC
25667 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
25693 TTAGATTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
25718 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:25932 original size:905 final size:896
Alignment explanation
Indices: 21200--26803 Score: 6855
Period size: 905 Copynumber: 6.2 Consensus size: 896
21190 CCGGTCTGAT
* * * *
21200 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
21265 TGGCCAGAGGGGCAGGATGCCCAAGCTGGGGATCGGCTGGGTCCCCTTCAGCATGCTGCCGATCC
66 CGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATGCTGCCGATCC
* * *
21330 TACTACCGCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
21395 CCGACAAAACAAGCGTGCGGGCGGGCGGGCACTATGCCGACCAAAGAGGCGGGATGCGCAAGTCG
196 CCGACAAAACGAGCG-GC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * * * * * *
21460 TGGATATG-TAGGTTGGTAGGTGGGCTTAGGCACTTCTTCATATTTTTTCCTTGCCAATGCCATT
259 TGGAT-CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* *
21524 TTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTTC-TGTGAAGTTTCATGGCAAGACC
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCATGTGAAGTTTCATGGCAAGACG
* *
21588 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTT
387 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-TAAATTTTTT
* * * * *
21653 CAAAAAGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAA
451 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGGCATGCACAAAA
*
21718 AAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
516 AAGTTCAGCTAAAAAC-TGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
21783 AGACCCTTTAATGGCTACTGGTAGCAAACTTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
21847 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *** * *
21912 CATGTGCGCACACCCCCCGGCCCCCCTAATCGTTAGAA-CCCAATTGCTGCCGGCCAGGTTCTCT
710 CATGTGCGCACACCCCCCGACCCCCCCAATCGCCGGAACCCCAA-TGCCGCCGGTCAGGTTCTCT
* * * * * * *
21976 -AGCGATGCTCCGACGATGGTGGCCCGAGAGAAAAAAATAT-GGCACCAGTACATGCTCGAGCCT
774 GA-CGATGC-CTGGCGATGGTGCCCCGAGCGAAAAAAA-ATCGGCACCAGCACATGCCCGAGCCC
22039 AGCATGTGCACCCACAACCCTCAATCCGATTCGATCTTAGGCTGGGAATGAACTCTGTATGCCTA
836 AGCATGTGCACCCACAACCCTCAAT-C----CGA---T----T-----TG-A-TCT-TA-G----
22104 CACTGGGAATGAACTCCGTATG
876 -ACTGGGAATGAACTCCGTATG
* ** * *
22126 CTTAGATTGGGAATGAACTATGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * * * *
22191 CGGCTAGAGAGGGCAAAATGCACAAG-CAGGGATCAGTCAGGTCCTCCTCAGCGTGCTACCAATC
66 CGGCTAGAG-GGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATGCTGCCGATC
* ** * * *
22255 CTACTACCACAACCCGC-AGTCTGGT-TCGATCTTACACTAGGAATGAACTCCGTATGCCTAAGC
130 CTGCTACCGTAACCCTCGA-TCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
22318 CAACAGACGAAAA-GAGCGGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGGCGGGATGTGCAA
193 CAACCGAC-AAAACGAGC-GGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* * *
22382 GGCGTGAATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
255 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
22447 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCATGTGAAGTTTCAT-GCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * *
22511 TGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTATGGTTCGGGATTTTTTTAAAATTTT
385 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-AAATTTT
* *
22576 TTCAGAAGGATTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACA
449 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGGCATGCACA
*
22640 AAAAAATTCAGCTAAAAACTCGAAGTGTACA--A------G---A-TTGAAAAAAGTGTCCCCAT
513 AAAAAGTTCAGCTAAAAACT-GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
22693 TTCAGACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTAAAATGCTTTTTCAGGGGGTGT
577 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
22758 GAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
642 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
22823 CATCATGTGCGCACACATCCCCC-ACCCCCACAATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
707 CATCATGTGCGCACAC--CCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
22887 CTC---CGA-------CGATGGTGCCCCGGGCGAAAAAAAATACAGCACCAGCACATGGCCTAGC
770 CTCTGACGATGCCTGGCGATGGTGCCCCGAGCGAAAAAAAAT-CGGCACCAGCACATGCCCGAGC
* * ** * *
22942 CCAGCTTGTGCACTCACAACCCTCGGTCCGATGTGATCTTAGACTGGGAATGAACTCTGTATG
834 CCAGCATGTGCACCCACAACCCTCAATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATG
*
23005 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
23070 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCTCTCTCAGCGTGCTGCTGATCC
66 CGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATGCTGCCGATCC
* *** *
23135 TGCTACCATAACCCTC-AGTCCAATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTACCGTAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * * *
23199 ATTGACGAAATGAGC-G-GGCGGGCGGGCACTACGCCAGCCAAAGAGGCGGGATGAGCAAGCCGT
195 ACCGACAAAACGAGCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* *
23262 GGATCGATAGGGTGGTAGGTGGGTTTAGACATATCTTCATATTTCTGCCATGCCAATGCCATTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
23327 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* ** * *
23392 CGTTTTCTATTTTTAATGATTTTTGAAACTTCGTACGGTTCGAGATTTTTTCAAATTTTTTCA-A
390 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGA
* * *
23456 GAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATGGGCATGCACAAAAGAG
455 -AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGGCATGCACAAAAAAG
* * *
23521 TTCAACTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
519 TTCAGCTAAAAACT-GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
23586 CACTTTAATGGCTACTGGCAGCAAACCTGTGAAATCTCAATTTCCCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
23651 TAGAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCGAAGAACCAGCACCCATCGCACATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * ** * *
23716 GTGCGCACAACCTCCCGGCCACCCCAATGGCCGTCACCCCAATGCCGTCGGTCAGGTTCTCCGAC
713 GTGCGCAC-ACCCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGAC
*
23781 GATGCTCCT-GCGATGGTGCCCCGAGCGAAAAAAAAAT-GGCACCAGCACATTCCCGAGCCCAGC
777 GATG--CCTGGCGATGGTGCCCCGAGCG-AAAAAAAATCGGCACCAGCACATGCCCGAGCCCAGC
* * *
23844 ATGTGCACCCGC-A-----AAT-C---TTGGTC-----C--------AA-TCC-AAT-
839 ATGTGCACCCACAACCCTCAATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
23876 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
23941 CGACCAGAAGGGCAGGATGCGCAAGCCAGGGATCGGTCGTGTCCCTCTCAGCGTGCTGTCAATCC
66 CGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATGCTGCCGATCC
* * * ** * * *
24006 TGCTGCCGCAACCCCCGATCCAGTCTGATCTTAGACTGGGAATGAACGCCATATGCATAAGCCAA
131 TGCTACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * *
24071 CCGATGAAATGAGCGAGCGGACGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCG
196 CCGACAAAACGAGCG-GCGG-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * * * *
24136 TGGATTGATAGGGTGGTAGGTGGTTTTA-TCACATCTTCATATTTCTACCATGCCAATGCCATAT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
*
24200 TTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
24265 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTTAATTTTTTTAG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAG
* *
24330 AAGGAGTTTTGG-CCCAAACTTGCTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAG
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGGCATGCACAAAAAAG
* * * * **
24394 TTCATCTAAAAACTTAAAGTGTATAGGATTTTGTGACCATTTGAAAAACGTGTTGCCATTTCAGA
519 TTCAGCTAAAAAC-TGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
24459 CACTTTAATGGCTACTGGCAGTAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
24524 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
24589 GTGCGCAGACCCCCCCCAACCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGT
713 GTGCGCACA-CCCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C---
* * * *
24654 GATGCTCCAGCGATGCTTCGGCGATGGTGCCACGGGCGAAAAAAAATGTGGCACCAGCACATGCC
773 --TG----A-CGATGCCT-GGCGATGGTGCCCCGAGCGAAAAAAAAT-CGGCACCAGCACATGCC
* * * * * *
24719 CGAGCCCAGCTTGTGCACCCATAACACTCGATCCGATTGGATCTTAGACTGGGAATGAACTTCGT
829 CGAGCCCAGCATGTGCACCCACAACCCTCAATCCGATTTGATCTTAGACTGGGAATGAACTCCGT
*
24784 ACG
894 ATG
* * *
24787 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * *
24852 TGACTAGAGGGGCAGGATGCGCAAGACGGGGATTGACTAGGTCCCCCTCAGCATGCTACCAATCC
66 CGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATGCTGCCGATCC
* ** * * **
24917 TGCTTCCGTAAAACTTGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * * * * *
24982 AAGACAAAACGAACGGGTAGGTGGGCGGGCACTACGCCAGCCAGAGAGGCGGGTTGCTCAAGTCA
196 CCGACAAAACGAGC-GG-CGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * * *
25047 TTGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTCCCATGCCAATGGCATTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* *
25112 TTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGAAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * * *
25177 TCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTAAGCTTTGGGATTTTTTTAAATTTTTTCAG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAG
* *
25242 AAGGCGTTTTGGCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTTTGGGCATGCACAAAAAAG
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGGCATGCACAAAAAAG
*
25307 TTCAGCTAAAAACTGAAAGTGTGCAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTG-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
25372 TACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
25437 TCAAGGCTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGTACCCATCATCACACAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CC--CATCGCACAT
* *
25502 CATGTGCGCACACCCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGTCTGTCAGGTTCTCTG
710 CATGTGCGCACACCCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTG
* * *
25567 ACGATGCGCTGGTGATGGTGCCCCGGGCGAAAAACAAATGCGGCACCAGAACATGCCCGAGCCCA
775 ACGATGC-CTGGCGATGGTGCCCCGAGCGAAAAA-AAAT-CGGCACCAGCACATGCCCGAGCCCA
*
25632 GCATGTGCACCCACAACCCCCAATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATG
837 GCATGTGCACCCACAACCCTCAATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
25692 TTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
25757 CGGCTAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCAGCATGCTACCGATCC
66 CGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATGCTGCCGATCC
* *
25822 TGCTGCCGTAACCCTCTG-TCTGGTCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTACCGTAACCCTC-GATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
25886 ACTGACAAAACGAGCGAGCGAGCAGGCGGGCACTACGTCGGCCAGAGAGAC-GGATGCGCGAGCC
195 ACCGACAAAACGAGCG-GCG-GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * *
25950 ATGGATCAATAGTGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCCATGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * *
26015 TTTATGGATTGTAAATTCATACAATGGTCCGTTAAGCCTTCATGTGAAGTTTCATGGAAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * **
26080 CTCGTTTTCTATTTTTCATGATTTTCGAAA-TAGTTTACGGTTCAAGATTTTTTTAAAATTTTTT
388 CTCGTTTTCTATTTTTCATGATTTTTGAAACT-TTTTACGGTTCGGGATTTTTTT-AAATTTTTT
* * * * *
26144 TAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGCATTTTTTTTGGCATGCACACAA
451 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGGCATGCACA-AA
26209 AAA-TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAGTTCAGCTAAAAACT-GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
26273 TAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
26338 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
26403 TCATGTGCGCACACCCCCTGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCT
709 TCATGTGCGCACACCCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCT
* * * *
26468 GGCGATGCTTCGGTGATGGTGCCCCGAGC-AAAAAAAATACGGCACCAGGACATGCCCGAGCCCA
774 GACGATGCCT-GGCGATGGTGCCCCGAGCGAAAAAAAAT-CGGCACCAGCACATGCCCGAGCCCA
** * ** **
26532 GCATGTGCA-CCACAACCCTTGATCTGATTCAATCTTAGACAAGGAATGAACTCCGTATG
837 GCATGTGCACCCACAACCCTCAATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
26591 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGACGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
26656 CGG-TCAGAAGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCAACATGCTGCCGATC
66 CGGCT-AGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATGCTGCCGATC
* *
26720 CTGCTACC-TAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACT-CGTATGCCTAAGTCA
130 CTGCTACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
26783 ACCCACAAAATGAGCGTGCGG
195 ACCGACAAAACGAGCG-GCGG
26804 GCGCTCAGCC
Statistics
Matches: 4080, Mismatches: 481, Indels: 264
0.85 0.10 0.05
Matches are distributed among these distances:
871 184 0.05
872 4 0.00
873 275 0.07
874 171 0.04
875 312 0.08
876 55 0.01
877 2 0.00
878 16 0.00
879 178 0.04
880 1 0.00
882 3 0.00
883 11 0.00
884 22 0.01
885 36 0.01
886 9 0.00
887 189 0.05
888 4 0.00
890 4 0.00
891 3 0.00
892 1 0.00
895 4 0.00
896 2 0.00
897 63 0.02
898 53 0.01
899 171 0.04
900 41 0.01
901 6 0.00
902 94 0.02
903 3 0.00
904 226 0.06
905 562 0.14
906 7 0.00
908 2 0.00
909 4 0.00
910 1 0.00
911 235 0.06
912 168 0.04
913 283 0.07
914 90 0.02
915 77 0.02
916 29 0.01
917 1 0.00
923 1 0.00
924 1 0.00
925 156 0.04
926 302 0.07
927 18 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATGCTGCCGATCC
TGCTACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACAAAACGAGCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGGCATGCACAAAAAAGTT
CAGCTAAAAACTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATG
CCTGGCGATGGTGCCCCGAGCGAAAAAAAATCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
CCCACAACCCTCAATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:26594 original size:26 final size:26
Alignment explanation
Indices: 26565--26617 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26555 CTGATTCAAT
26565 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
** *
26591 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
26617 C
1 C
26618 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:29411 original size:873 final size:867
Alignment explanation
Indices: 22126--30533 Score: 5141
Period size: 873 Copynumber: 9.5 Consensus size: 867
22116 ACTCCGTATG
* ** * * *
22126 CTTAGATTGGGAATGAACTATGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG-
* ** ** * * * * * *
22191 CGGCTAGAGAGGGCAAAATGCACAAGCAG-GGATC-AGTCAGGTCCTCCTCAGCGTGCTACCAAT
65 CGGCCAGAG-GGGCAGGATGCGTAAGCTGAGGATCGA-CCGGGTCCCCCTCAACGTGCTACCGAT
* * * * * * *
22254 CCTACTACCACAACCCGCAGTCTGGT-TCGATCTTACACTAGGAATGAACTCCGTATGCCTAAGC
128 CCTGCTGCCACAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTACGC
* * * *
22318 CAACAGACGAAA-AGAGCGGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGGCGGGATGTGCAA
192 CAACCGACGAAACA-AGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCAA
* * *
22382 GGCGTGAATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
22447 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCATGTGAAGTTTCAT-GCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * * * * *
22511 TGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTATGGTTCGGGATTTTTTTAAAATTTT
386 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTAGAGATTTTTTTAAAA-TTT
* * * *
22576 TTCAGAAGGATTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
450 TTCAGAAGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTATATTTTT-TTGGCATGCA-AA
22641 AAAAATTCAGCTAAAAACTCGAAGTGTACA--A------G---A-TTGAAAAAAGTGTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCATT
* * * * * * *
22694 TCAGACACTTTAATGGCTA-CTGGGAGCAAACCTGTAAAATCTAAAATGCTTTTTCAGGGGGTGT
578 CCAGACACTTTAATGGCTATC-GGCAGCAAACCTATAAAATCTCAAATGCTCTTT-AAGGGGTAT
* *
22758 GAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
641 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
22823 CATCATGTGCGCACACATCCCCC-ACCCCCACAATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
706 CATCATGTGCG-A-AC-CCCCCCGGCCCCCCCAATCGT-GGAACCCCAATGCCGCCGGTCAGGTT
* * * *
22887 CTC---CGA--------CGATGGTGCCCCGGGCGAAAAAAAATACAGCACCAGCACATGGCCTAG
767 CTCTGGCGATGCTCCGGCGATGGTGCCCC-GGTG-AAAAAAATACGGCACCAGCACATGCCCGAG
* * * *
22941 CCCAGCTTGTGCACTCACAACCCTCGGTCCGATGTGATCTTAGACTGGGAATGAACTCTGTAT
830 CCCATCATGTGCACCCGCAA-CC-C--T-C---G-G----T---CT--G-AT---C-C-G-AT
* *
23004 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * * * *
23069 CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCTCTCTCAGCGTGCTGCTGATC
65 -CGGCCAGAGGGGCAGGATGCGTAAGCTGAGGATCGACCGGGTCCCCCTCAACGTGCTACCGATC
* * * *** * *
23134 CTGCTACCATAACCCTCAGTCCAATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCA
** * * * * * *
23199 ATTGACG--A-AA-TGAGCGGGCGGGCGGGCACTACGCCAGCCAAAGAGGCGGGATGAGCAAGCC
194 ACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGCC
* *
23260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGACATATCTTCATATTTCTGCCATGCCAATGCCATT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
23325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * ** * * *
23390 CTCGTTTTCTATTTTTAATGATTTTTGAAACTTCGTACGGTTCGAGATTTTTTCAAATTTTTTCA
389 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTAGAGATTTTTTTAAAATTTTTCA
* * * * *
23455 -AGAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATGGGCATGCACAAAAG
454 GA-AGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTATATTTTT-TTGGCATGCA-AAAAA
* * * * **
23519 AGTTCAACTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
516 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTCCA
* * * * * *
23584 GACACTTTAATGGCTA-CTGGCAGCAAACCTGTGAAATCTCAATTTCCCTTTAAGGGGGTGTGAG
581 GACACTTTAATGGCTATC-GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTATGAG
* * * *
23648 TTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCGAAGAACCAGCACCCATCGCACAT
644 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * ** * *
23713 CATGTGCGCACAACCTCCCGGCCACCCCAATGGCCGTCACCCCAATGCCGTCGGTCAGGTTCTCC
709 CATGTGCG-A-ACCCCCCCGGCCCCCCCAATCG-TGGAACCCCAATGCCGCCGGTCAGGTTCTCT
* * * * * * *
23778 GACGATGCTCCTGCGATGGTGCCCCGAGCGAAAAAAAAATGGCACCAGCACATTCCCGAGCCCAG
771 GGCGATGCTCCGGCGATGGTGCCCCG-GTGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAT
** * ** *
23843 CATGTGCACCCGCAAATCTTGGTCCAATCCAAT
835 CATGTGCACCCGCAACCCTCGGTCTGATCCGAT
* * * *
23876 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG-
* * * * ** * * * ** *
23941 CGACCAGAAGGGCAGGATGCGCAAGC-CAGGGATCGGTCGTGTCCCTCTCAGCGTGCTGTCAATC
65 CGGCCAGAGGGGCAGGATGCGTAAGCTGA-GGATCGACCGGGTCCCCCTCAACGTGCTACCGATC
* * * ** * * * *
24005 CTGCTGCCGCAACCCCCGATCCAGTCTGATCTTAGACTGGGAATGAACGCCATATGCATAAGCCA
129 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCA
* ** * * * *
24070 ACCGATGAAATGAGCGAGCGGACGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCC
194 ACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGCC
* * * * *
24135 GTGGATTGATAGGGTGGTAGGTGGTTTTA-TCACATCTTCATATTTCTACCATGCCAATGCCATA
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
24199 TTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * *
24264 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTTTAATTTTTTT
389 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-AGAGATTTTTTTAAAATTTTTC
* * * *
24328 AGAAGGAGTTTT-GGCCCAAACTTGCTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAA
453 AGAAGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTATATTTTT-TTGGCATGCA-AAAAA
* * ** * * * ** *
24392 AGTTCATCTAAAAACTTAAAGTGTATAGGATTTTGTGACCATTTGAAAAACGTGTTGCCATTTCA
516 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTCCA
* * * *
24457 GACACTTTAATGGCTA-CTGGCAGTAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
581 GACACTTTAATGGCTATC-GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTATGAG
*
24521 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
644 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*** *
24586 CATGTGCGCAGACCCCCCCCAACCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
709 CATGTGCG-A-ACCCCCCCGGCCCCCCCAATCG-TGGAACCCCAATGCCGCCGGTCAGGTTCT-C
* * * **
24651 GGTGATGCTCCAGCGATGCTTCGGCGATGGTGCCACGGGCGAAAAAAAATGTGGCACCAGCACAT
770 -----TG-----GCGATGCTCCGGCGATGGTGCC-CCGGTG-AAAAAAATACGGCACCAGCACAT
* * **
24716 GCCCGAGCCCAGCTTGTGCACCCATAACACTCGATCCGATTGGATCTTAGACTGGGAATGAACTT
823 GCCCGAGCCCATCATGTGCACCCGCAAC-C-C--T-C----GG----T---CT--G-AT---C--
24781 CG-T
864 CGAT
* * *
24784 ACGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACGGGCGCTC
1 -C--TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTC
* * * * * ** * * *
24849 AGCTGACTAGAGGGGCAGGATGCGCAAGAC-GGGGATTGACTAGGTCCCCCTCAGCATGCTACCA
63 AGC-GGCCAGAGGGGCAGGATGCGTAAG-CTGAGGATCGACCGGGTCCCCCTCAACGTGCTACCG
* ** ** * * * ** *
24913 ATCCTGCTTCCGTAAAACTTGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
126 ATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACG
** * ** * * * * *
24978 CCAAAAGACAAAACGAA-CGGGTAGGTGGGCGGGCACTACGCCAGCCAGAGAGGCGGGTTGCTCA
191 CCAACCGACGAAAC-AAGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCA
* * * * * *
25042 AGTCATTGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTCCCATGCCAATGG
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
* *
25107 CATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGAAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* * * * * * *
25172 ACGACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTAAGCTTTGGGATTTTTTTAAATTTT
385 ACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTAGAGATTTTTTTAAAATTT
* * * *
25237 TTCAGAAGGCGTTTTGGCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTTTGGGCATGCACAA
450 TTCAGAAGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTTT-GGCATGCA-AA
* * *
25302 AAAAGTTCAGCTAAAAACT-GAAAGTGTGCAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
513 AAAAATTCAGCTAAAAACTCG-AAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCAT
* * * * *
25366 TTCAGATACTTTAATGGCTA-CTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTG
577 TCCAGACACTTTAATGGCTATC-GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTA
* * * *
25430 TGAGTTCTCAAGGCTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGTACCCATCAT
640 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CC--CAT
* * * * * *
25495 CACACATCATGTGCGCACACCCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGTCTGTCAGG
702 CGCACATCATGTGCGAAC-CCCCCCGGCCCCCCCAATCG-TGGAACCCCAATGCCGCCGGTCAGG
* * * * * * *
25560 TTCTCTGACGATGCGCTGGTGATGGTGCCCCGGGCGAAAAACAAATGCGGCACCAGAACATGCCC
765 TTCTCTGGCGATGCTCCGGCGATGGTGCCCC-GGTG-AAAA-AAATACGGCACCAGCACATGCCC
* *
25625 GAGCCCAGCATGTGCACCCACAACCCCCAATCCGATTTGATCTTAGACTGGGAATGAACTCCGTA
827 GAGCCCATCATGTGCACCCGCAA--CCC--T-CG----G----T---C------TG-A-TCCG-A
25690 T
867 T
* * * *
25691 GTTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTC-A
* * * * * *
25756 CCGGCTAGAGGGGCAGGATGCGCAAGC-CAGGGATCGACCGGGTCCCCCTCAGCATGCTACCGAT
64 GCGGCCAGAGGGGCAGGATGCGTAAGCTGA-GGATCGACCGGGTCCCCCTCAACGTGCTACCGAT
** * * *
25820 CCTGCTGCCGTAACCCTCTGTCTGGTCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCC
128 CCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCC
* * * * * * * * * *
25885 AACTGACAAAACGAGCGAGCGAGCAGGCGGGCACTACGTCGGCCAGAGAGAC-GGATGCGCGAGC
193 AACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGC
* * * *
25949 CATGGATCAATAGTGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCCATGCCAATGCCAT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* * *
26014 TTTTATGGATTGTAAATTCATACAATGGTCCGTTAAGCCTTCATGTGAAGTTTCATGGAAAGACG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * *
26079 ACTCGTTTTCTATTTTTCATGATTTTCGAAA-TAGTTTACGGTTCA-AGATTTTTTTAAAATTTT
388 ACTCATTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTT-AGAGATTTTTTTAAAA-TTT
* * * *
26142 TTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGCAT-TTTTTTTGGCATGCACA
450 TTCAGAAGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTT--ATATTTTTTTGGCATGCA-A
* *
26206 CAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
512 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCAT
** * * *
26271 TTTAGACACTTTAATTGCTA-CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
577 TCCAGACACTTTAATGGCTATC-GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTA
26335 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
640 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
26400 ACATCATGTGCGCACACCCCCTGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
705 ACATCATGTGCGAAC-CCCCCCGGCCCCCCCAATCG-TGGAACCCCAATGCCGCCGGTCAGGTTC
* * ** *
26465 TCTGGCGATGCTTCGGTGATGGTGCCCCGAGCAAAAAAAATACGGCACCAGGACATGCCCGAGCC
768 TCTGGCGATGCTCCGGCGATGGTGCCCCG-GTGAAAAAAATACGGCACCAGCACATGCCCGAGCC
* * *
26530 CAGCATGTGCA-CCACAACCCTTGATCTGATTCAATCTTAGACAAGGAATGAACTCCGTAT
832 CATCATGTGCACCCGCAACCC----TC-G-----------GTC------TG-A-TCCG-AT
* * * * *
26590 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGACGCTCAA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTC-A
* * * * * ** * *
26655 CCGGTCAGAAGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCAACATGCTGCCGATC
64 GCGGCCAGAGGGGCAGGATGCGTAAGCTGAGGATCGACCGGGTCCCCCTCAACGTGCTACCGATC
* * * * * *
26720 CTGCTACC-TAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACT-CGTATGCCTAAGTCA
129 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCA
* * * * * * *
26783 ACCCAC--AA-AA-TGAGCGTGCGGGC--GCTC-A-GCCGGCCA-A-AGGAGTAGGATGCGCAAG
194 ACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCG--GGATGCGCAAG
* * ** * * * * * *
26838 CCGGGGATC-AGTCGGGTCACCCTTAGTGTGCTGCCGATCCTGCT-GCCACAACCCTCGGTCTGG
257 CCGTGGATCGA-TAGGGT----GGTAG-GTG--G--G-T--T--TAGGCAC-ATCTTC-ATAT-T
* * * * * *** * * * ** * * *
26901 GCTGATCTTAGACTAGGAATG-AACTCCGTATGCCTAAGCCAAACGACGAAACAAGCGGGCGGGC
304 TCTG-CCAT-G-C---CAATGCCA-TTTTTATGGCT-TG-TAAA-TTC-ATACAA-TGGTC---C
***** * * ** *** * * * **
26965 GGGCGGGCACTACACCGACCAAAGAGACGGGATGCACAAGCCGTGGA-TCGATAAGGTGGTAGTT
354 -CTTAAGC-CTTCA-TG--TGAAGTTTC---ATG-GCAAGAC---GACTC-AT---TTTCTA-TT
* * * ** * ** * *
27029 GGGTTTAGGCAC-A-TCTTCATA-TTTCTGCCATGCCA-ATGCCATTTTTATGGCTTGTAAATTA
402 ---TTT---CACGATTTTTGAAACTTT-TTAC-GGTTAGA-G--A-TTTT-T---TT-AAAATTT
* * * ** * * * * * * *
27090 AT-ACAATG-GTCCCTTGAGCCTTCATGTGAAGTTTCATGGCAAGAC--GACTCGTTTTCTATTT
450 TTCAGAAGGAGT---TTTCGCC-CCA----AA----CTTGG-TAGACGTGA-TCCTTATATTTTT
* * ** *** ** * * * * * *
27151 TT--CA--C-----CATTTTTG--AAACTTTTTACG-GTTCGGGATTTCT-TTAAAATTTTTTCA
501 TTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT-TGTGACAA---TTTGA
** * * ** * * **** * ***
27203 GAAGGAGTTTTCGCC---CCA-A-AC-TTGGTGGACATGATC--CTTGTAGTTTTGTTGGCATGC
562 -AAAAAG-TGTCCCCATTCCAGACACTTTAATGG-C-T-ATCGGC-AGCAAACCT-ATAAAAT-C
* * * * * *** * ** * ** * * *
27260 ACAAA---ACATTCA--GCTA--AAAACTCGAAGCGT-A-CA-GGATTTTGTGACC-ATTTGAA-
619 TCAAATGCTCTTTAAGGGGTATGAGTTCTCGAGGTTTGATGAGGGA-TAGGGGGCCAATAT-AAG
** * * ** * * * * ** * * *
27313 --AAAAGTGTCC-TCA--TTTCAGACACTTTAATG-GC-TA-----CTGG--CAGCAAACCTGTA
682 GGCCAAGT-ACCAGCACCCATC-G-CAC-ATCATGTGCGAACCCCCCCGGCCCCCCCAATC-GTG
* * * * ** * **** * * * * * **** *
27364 AAATCTCAAATG-C-TCTTTAAGG-GGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATAAGG-GG
742 GAA-CCCCAATGCCGCCGGTCAGGTTCTCTG-GCGATGCTC-CGG--CGATG-GTGCCCCGGTGA
** * * * * * * * * * * *
27424 CCAATATAAGGGC-CAAGTCCCA-GCACCCATCGCACATCAGGTG--CGCACACCCCTCGG-C-C
801 AAAAAAT-ACGGCACCAG-CACATGC-CCGA--GCCCATCATGTGCACCCGCAACCCTCGGTCTG
** *
27483 CCCCCA-
861 ATCCGAT
* ** * ** ** * * *
27489 ATT-G-CT--G---GAAC-CCCAATGTCGCT-GGTCAGGTTCTTCG--ATGATGC-TCCGGTGAT
1 CTTAGACTGGGAATGAACTCCGTATG-C-CTAAGTCA--ACCCACGAAACGA-GCATGCGG-G-C
* ** * *** ** * ** * * * * * *
27542 GGTGCCCCGGGC-GA--AAAAAAATGTGGCACCAGCA-CAT-G-CC-CGT-GCCCTGC-ATGTGC
59 GCT-CAGCGGCCAGAGGGGCAGGATGCGTAAGCTG-AGGATCGACCGGGTCCCCCT-CAACGTGC
* * * * ** * * * ** * * *
27598 -ACCCGTAACCCT-CGGTTCAGTCAGA-TCTTAGACTGG---GA-ATGA-ACTCCGTATG-CCTA
121 TA-CCG--ATCCTGCTG-CCA--CA-ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * ** ** ** * ** * *
27654 AGTCA-ACCCACG--AAACGAGCG-TACGGGCGGGTAC-AAC-ATCGGTCAGAGAGGCGGGATGC
179 CGT-ATGCCTACGCCAACCGA-CGAAACAAGCGGG--CGGGCGGGCGGGCA-CTACGCCGG-T-C
* ** * ** * * * * **** *
27713 -GAAAGTTGTGGAT-CG-ATGGGGTGG-TAGGT-GGGT-TTACGCACATCTT---CATAT-TTC-
237 AGAGAGGCG-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT-TTAGGCACATCTTCA
* * * * *
27767 TGCCA-TGC--CAATGCCAT------TTTTATGGCCTGTAAATTCATACATTGGTCCCTTAAGCC
300 T---ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
27823 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
362 TTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * *
27888 GGTTCGAGATTTTTTTAAAAAATTTTCAGAAGGATTTTTGGCCTCAAACTTGGTAGACGTGATCC
427 GGTTAGAGATTTTTTT-AAAATTTTTCAGAAGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCC
* * * * *
27953 ATATATATTTTTTGGCTTGCAAAAAAAAATTTAGCGAAAAACTCGAAGTGTACAAGATTTTGTGA
491 TTATAT-TTTTTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * * *
28018 CCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA-CTGGCAGCAAACCTGTAAAAT
554 CAATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTATC-GGCAGCAAACCTATAAAAT
*
28082 CTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
618 CTCAAATGCTCTTTAAGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
28147 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGG-CCCCCCAATCGTCGGAACC
683 GCCAAGTACCAGCACCCATCGCACATCATGTGCGAACCCCCCCGGCCCCCCCAATCGT-GGAACC
* * *
28211 CCAATGCCGCCGGTCAGGTTCTTTGGCGATGCTCCGGTGATGGTGCCCCGGGTGAAAAAACATGC
747 CCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCC-GGTGAAAAAA-ATAC
* ** * * *
28276 GGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTACAACCCTTGGTCTGGTCCGTT
810 GGCACCAGCACATGCCCGAGCCCATCATGTGCACCCGCAACCCTCGGTCTGATCCGAT
*
28334 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * **
28399 TGGCCAAAGGGGCAGGATGCGTAAGCCGAGGATCGACCGGGTCCCCCTCAACGTGCTGTCGATCC
66 -GGCCAGAGGGGCAGGATGCGTAAGCTGAGGATCGACCGGGTCCCCCTCAACGTGCTACCGATCC
* * * ** * **
28464 TGTTGCCACAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAATCCAA
130 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAA
** * * *
28529 CTAACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAATCCG
195 CCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGCCG
*
28594 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* * *
28659 TTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCATATGAAGTTTCATGGCAAGATGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* *
28724 TCGTATTT-TATTTTTCACGATTTTTGAAACATTTTACGGTTTAG-GATTTTTTTAAAATTTTTC
390 TCAT-TTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTAGAGATTTTTTTAAAATTTTTC
* * * *
28787 AGAAGGAGTTCTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTAAAAAAC
453 AGAAGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTATATTTTT-TTGGCATGCAAAAAA-
* *
28852 AATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTCCA
516 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTCCA
* *
28917 GACACTTTAATGGCTATCGGCAGCAAACCTTTAAAATCTCAAATACTCTTTAAGAGGGTATGAGT
581 GACACTTTAATGGCTATCGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG-GGGTATGAGT
* * *
28982 TCTGGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
645 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
29047 ATGTGCGAACCCCCCCTGGCCCCCCCAATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCTGG
710 ATGTGCGAACCCCCCC-GGCCCCCCCAATCG-TGGAACCCCAATGCCGCCGGTCAGGTTCTCTGG
* *
29112 CGATGCTCCGGCGATGGTGCCCCGAGCGAAAAAAATACGGCACCAACACATGCCCGAGCCCATCA
773 CGATGCTCCGGCGATGGTGCCCCG-GTGAAAAAAATACGGCACCAGCACATGCCCGAGCCCATCA
* *
29177 TGTGCACCCGCAACCCTCGATCCGATCCGAT
837 TGTGCACCCGCAACCCTCGGTCTGATCCGAT
* *
29208 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGACGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG-
* * * * **
29273 CGGCCAGAGGGGCAGGATGCGTAAGCTGGGGATC-AGTCGGGTACCCTTCAGTGTGCTACCGATC
65 CGGCCAGAGGGGCAGGATGCGTAAGCTGAGGATCGA-CCGGGTCCCCCTCAACGTGCTACCGATC
****** *
29337 CTGCTATTGTTACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTACG-CA
129 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCA
* * * * **
29401 ACCGACGAAACGAGCGGGCGGGTGGGCGGGCACTATGTCGGTCAGAGAGGTAGGATGCGCAAGCC
194 ACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGCC
* **
29466 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGGTGCCAATGCCATT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
** * * * * *
29531 TTTATTTCTTGCAAATTCATACAATGGTTCCTTAGGCCTTCTTGTGAAGTTTCACGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
29596 CTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGAGTT-GAGATTTTTTTAAATTTTTTC
389 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACG-GTTAGAGATTTTTTTAAAATTTTTC
* * * * *
29660 AAAAGGATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTGGGCATGCACAAAAAA
453 AGAAGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTTTGGCATGCA-AAAAAA
* *
29725 ATTCAGCTAAAAACTCGAAGTGTAGAGGATTTTGTGACCAATTTGAAAAAAGTGTCCCCATTGCA
517 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA-CAATTTGAAAAAAGTGTCCCCATTCCA
*
29790 GACACTTTAATGGCTATTTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAACGGGGTGA-GA
581 GACACTTTAATGGCTA-TCGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGT-ATGA
*
29854 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACA
643 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
29919 TCATGTGCGCACACCCCCCCGGCCCACCCAATCGTTGAAACCCCAATGCCGCCGATCAGGTTCTC
708 TCATGTGCG-A-ACCCCCCCGGCCCCCCCAATCG-TGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
29984 ---CGA--------CGATGGTGCCCCGGATGAAAAGAAATATGGCACCAGCATATGCCCGAGCCC
770 TGGCGATGCTCCGGCGATGGTGCCCCGG-TGAAAA-AAATACGGCACCAGCACATGCCCGAGCCC
* * * *
30038 AGT-ATGTGCACCCGTAATCCTCGGTCTGATCTGAC
833 A-TCATGTGCACCCGCAACCCTCGGTCTGATCCGAT
* * * *
30073 CTTAGACTGGGAATGAACTTCGTACGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG-
* **
30138 CGG-CAGAGGGGTAGGATGCACAAG-TCGAGGATCGACCGGGTCCCCCTCAACGTGCTACCGATC
65 CGGCCAGAGGGGCAGGATGCGTAAGCT-GAGGATCGACCGGGTCCCCCTCAACGTGCTACCGATC
* **
30201 CTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGATAATGAACTCCGTATGCCTTA-GCC
129 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC-TACGCC
* * ** * *
30265 AATCGATGAAATGAGCGGGCGGGTGGGCGGGCACTACGCTGGTCAGAGAGGCGGGATGCGCAAGC
193 AACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGC
* *
30330 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAAGGCCAT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* *
30395 TTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * *
30460 ACTAATTTTCTATTTTTCTCAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTC
388 ACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTAGAGATTTTTTTAAAATTTTTC
30525 AGAAGGAGT
453 AGAAGGAGT
30534 CCCTGGCGAA
Statistics
Matches: 5942, Mismatches: 1142, Indels: 904
0.74 0.14 0.11
Matches are distributed among these distances:
811 4 0.00
812 9 0.00
813 7 0.00
815 1 0.00
816 2 0.00
817 1 0.00
820 3 0.00
821 10 0.00
822 11 0.00
823 18 0.00
824 7 0.00
825 13 0.00
826 23 0.00
827 6 0.00
828 5 0.00
829 3 0.00
830 16 0.00
831 7 0.00
832 8 0.00
833 6 0.00
834 8 0.00
835 14 0.00
836 2 0.00
837 2 0.00
838 3 0.00
839 2 0.00
840 11 0.00
841 23 0.00
842 33 0.01
843 17 0.00
844 8 0.00
845 6 0.00
846 1 0.00
847 3 0.00
848 4 0.00
849 4 0.00
850 9 0.00
851 6 0.00
852 18 0.00
853 27 0.00
854 5 0.00
855 9 0.00
856 8 0.00
857 14 0.00
858 18 0.00
859 14 0.00
860 13 0.00
861 18 0.00
862 6 0.00
863 6 0.00
864 119 0.02
865 360 0.06
866 4 0.00
867 9 0.00
868 1 0.00
869 1 0.00
871 185 0.03
872 217 0.04
873 785 0.13
874 496 0.08
875 440 0.07
876 68 0.01
877 4 0.00
878 17 0.00
879 154 0.03
880 2 0.00
881 1 0.00
883 1 0.00
884 27 0.00
885 50 0.01
886 33 0.01
887 192 0.03
888 13 0.00
889 12 0.00
890 41 0.01
891 30 0.01
892 10 0.00
893 30 0.01
894 10 0.00
895 12 0.00
896 5 0.00
897 65 0.01
898 55 0.01
899 146 0.02
900 39 0.01
901 9 0.00
902 94 0.02
903 5 0.00
904 212 0.04
905 488 0.08
906 17 0.00
907 7 0.00
908 2 0.00
909 8 0.00
910 3 0.00
911 236 0.04
912 171 0.03
913 215 0.04
914 8 0.00
915 47 0.01
916 21 0.00
917 3 0.00
920 1 0.00
921 3 0.00
922 5 0.00
923 8 0.00
924 10 0.00
925 21 0.00
926 22 0.00
927 14 0.00
928 12 0.00
929 4 0.00
931 2 0.00
932 5 0.00
933 2 0.00
934 11 0.00
935 9 0.00
936 8 0.00
937 8 0.00
938 1 0.00
939 12 0.00
940 9 0.00
941 5 0.00
942 2 0.00
943 5 0.00
944 24 0.00
945 13 0.00
946 6 0.00
947 18 0.00
948 9 0.00
949 13 0.00
950 2 0.00
953 1 0.00
954 2 0.00
955 2 0.00
956 1 0.00
957 8 0.00
958 8 0.00
959 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (867 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
GGCCAGAGGGGCAGGATGCGTAAGCTGAGGATCGACCGGGTCCCCCTCAACGTGCTACCGATCCT
GCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAAC
CGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
CATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTAGAGATTTTTTTAAAATTTTTCAGA
AGGAGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTTTGGCATGCAAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTCCAGACAC
TTTAATGGCTATCGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTATGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GAACCCCCCCGGCCCCCCCAATCGTGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTC
CGGCGATGGTGCCCCGGTGAAAAAAATACGGCACCAGCACATGCCCGAGCCCATCATGTGCACCC
GCAACCCTCGGTCTGATCCGAT
Found at i:32233 original size:26 final size:26
Alignment explanation
Indices: 32197--32249 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32187 CCGATCCGAT
*
32197 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
32223 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
32249 C
1 C
32250 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:34012 original size:26 final size:26
Alignment explanation
Indices: 33976--34025 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
33966 CCAGTCCAAT
*
33976 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
34002 CTTAAACTGGGAATGAGCTCCGTA
1 CTTAAACTGGGAATGAACTCCGTA
34026 AGCCTATGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:34882 original size:902 final size:903
Alignment explanation
Indices: 31321--35118 Score: 4348
Period size: 902 Copynumber: 4.2 Consensus size: 903
31311 CTGATCCGAT
* * ** *
31321 CTTAGAGTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGATCTCAGC
* * * * * **
31386 CGACCAAAGGGGCAAGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCAGTGTGCTACCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTACTGATTT
* ** * * * *
31451 TGCTGCCATAACCCTCGGTCCGGTTTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-A
131 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * ** * * **
31515 TCCATTGAAACGAGTAGGC-G--GGG-GGGCGGGCACTACGCCGGCCAGATAGGCGGGATGCTTA
196 T-CAATGAAACGAG-CGGCAGACGGGCGGGCGGGCACTACGCAAGCCAAAGAGGCGGGATGCGCA
* *
31576 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
259 AGCCATGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
* * *
31641 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
324 CATTTTTATAGCTCGTAAATTCATACAATGGTCCCTTAAGCCCTCATGTGAAGTTTCATGGCAAG
* ** * * *
31706 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCCAGATTTTTTT-AAATTT
389 ACGACTCGTTTTCTATTTTTCACGAGTTTCAAAACTTTTTACGGTTCGAGATTTTTTTCAAAATT
* * * * * * *
31770 TTTCAGAAGGAGTTCTGGCCCCAAACTTGTTAGACGTGAT-CTTGTATTTTTGTGGGCATGCA-A
454 TTT-A-AAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGACATGCACA
* * * *
31833 AAAAATATTCAGCTAAAAACTCGAAGTGTATAGTATTTTGTGACCATTTGAAAAAAGTG-ACCCT
517 AAAAA-ATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGGGACCATTTGAAAAAAGTGTACCC-
* * *
31897 ATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGT
580 ATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * * * ** *
31962 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCACTATAAGCGCCAAGTACCTGCACCCATCG
645 ATGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAACACCCATCA
* * * *
32027 CACATCATGTGCGCACACACCCCCC-GAACCCCCTAATC-ATTGAAACCCCAATGCCGTC-AGTC
710 CACATCATGTGCGCACAC-CCCCCCAG-CCCCCCCAATCGCTAG-AACCCCAATGCCGTCGA-T-
* * * * *
32089 AGGTTCTCTGACGATGCTCCGACGATGGTGACTC-AGGCGAAAAAAAATGCGGCACCAGCACATG
770 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-GCGAAAAAAAATGCGACACCAGCACATG
* ** * **
32153 CCCGAGCCCAGCATGTGCACCCGTAACCCTC-GATCC-GATCCGATCTTAGACTGGGAATGAACT
834 CCCAAGCCCAGCATGTGCACCCACAACCCTCAG-TCCAG-TCCAATCTTAGACTGAAAATGAACT
*
32216 CCATATG
897 CCGTATG
* * * *
32223 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGT-TCAG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG-ATCTCAG
* * * * * * * * **
32287 TCGGCCAGAGGGGTAGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTCATCATGCTGCCAATT
65 CCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTACTGATT
* * * * * * *
32352 CTGCTGCCAGC-ACCTTC-AGTTCGGTCTGATCTTAGACTGGGAATGGACACCGTATGCCTAAGC
130 TTGCTACC-GCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
* * * ** * * *
32415 CAACCGATGAAACGAGCGG--G-CGGGCGAGCGGGCACTACGCCGGCCAGAGTGGCAGGATGCGC
193 CAATCAATGAAACGAGCGGCAGACGGGCGGGCGGGCACTACGCAAGCCAAAGAGGCGGGATGCGC
* ** * * * * *
32477 AAGCCGTGGATGGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCTTATTTTTGCCATGCCAATT
258 AAGCCATGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG
* * * *
32542 CCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
323 CCATTTTTATAGCTCGTAAATTCATACAATGGTCCCTTAAGCCCTCATGTGAAGTTTCATGGCAA
* * * * * *
32607 GACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTTATGGTTCGGGATTTTTTTTAAAT
388 GACGACTCGTTTTCTATTTTTCACGAGTTTCAAAAC-TTTTTACGGTTCGAGATTTTTTTCAAAA
* *
32672 TTTTTCAGAAGGAGTTTT-GCCTCCAAACTTGGTAGACATGATCCTTGTA-TTTTATTGGCATGC
452 TTTTT-A-AAGGAGTTTTAGCC-CCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGACATGC
* * * * *
32735 ACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGGT-TCCC
514 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGGGACCATTTGAAAAAAGTGTACC
* * *
32799 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGAGGG
579 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * *
32864 TGTGAGTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
644 TATGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAACACCCATC
* ** * ** * *
32929 GCACATCATGTGCGCACACCCCTTC-GACCACCCCCAATCACCGGAACCTCAATGCCG-CAGGTC
709 ACACATCATGTGCGCACACCCCCCCAG-CC-CCCCCAATCGCTAGAACCCCAATGCCGTC-GAT-
* * * * * * * *
32992 AGGTTCTCTGAAGATGCTCCGACGATGGTGGCTCGGGCGAAAAAAAATGTGGCACCAGCACATGC
770 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGACACCAGCACATGC
* **
33057 CCAGGCCCAGCATGTGCACCCGTAACCCTC-G----GT-C---C---G---G----T----T---
835 CCAAGCCCAGCATGTGCACCCACAACCCTCAGTCCAGTCCAATCTTAGACTGAAAATGAACTCCG
33096 TAAT-
900 T-ATG
* * **
33100 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGATCTCAGC
* * * * *
33165 CGACCAGAGGGGCAGGATGCGCAAG-CTGGGGATCGG-CTGGGTCCCCGTCTGCGTGCTGCCGAT
66 CGGCCAGAGGGGCAGGATGCGCAAGTC-GGGGATCGGTC-GGGTCCCCCTCAGCGTGCTACTGAT
* * * ** * *
33228 CCTT-CTACCACAGCCCTCTG-TCCGGTCCAATCTAAGACTGGGAATGAACTCCGTATGCCTAAG
129 -TTTGCTACCGCAACCCTC-GATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * *
33291 CCAACCAACGAAACGAGC-G--GACGGGCGGGTGGGCACTACGCAAGCCAAAGAGGCGGGATGCG
192 CCAATCAATGAAACGAGCGGCAGACGGGCGGGCGGGCACTACGCAAGCCAAAGAGGCGGGATGCG
* *
33353 CAAGCCGTGGATCAATAAGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCCATGCCAAT
257 CAAGCCATGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
* *
33418 GCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
322 GCCATTTTTATAGCTCGTAAATTCATACAATGGTCCCTTAAGCCCTCATGTGAAGTTTCATGGCA
*
33483 AGACGACTCGTTTTCTATTTTTCACGAGTTTCAAAACTTTTTACGGTTCGAGATTTTTTTCAAAT
387 AGACGACTCGTTTTCTATTTTTCACGAGTTTCAAAACTTTTTACGGTTCGAGATTTTTTTCAAAA
* * * * *
33548 TTTTTCAGAAGGTGTTTTGGCTCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCA
452 TTTTT-A-AAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGACATGCA
* * * * *
33613 CAAAACAGTTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAATGTGTACCC
515 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGGGACCATTTGAAAAAAGTGTACCC
*
33678 ATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
580 ATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
33743 ATGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
645 ATGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAACACCCATCA
* * * * * *
33808 CACATCATGTGTGCACACCCCCCCGGCCCCTCCAATCGCTGGAACCCCAATGTCGTCGGTAGGTT
710 CACATCATGTGCGCACACCCCCCCAGCCCCCCCAATCGCTAGAACCCCAATGCCGTCGATAGGTT
** * * *
33873 CTCCGACGATGCTCTTGCGATGGTGCCCCGAGCGAAAAAAAATGTGGCACCAGCACATGCCCGAG
775 CTCCGACGATGCTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGACACCAGCACATGCCCAAG
* **
33938 CCCAGCATGTGCACCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
840 CCCAGCATGTGCACCCACAACCCTCAGTCCAGTCCAATCTTAGACTGAAAATGAACTCCGTATG
* * * * * *
34002 CTTAAACTGGGAATGAGCTCCGTAAGCCTATGTCAACCCACGAAACGAGCGTGCGGGATCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGATCTCAGC
* **
34067 CGGCTAGAGGGGCAGGATGCGCAAGTCGATGATCGGTCGGGTCCCCCTCAGCGTGCTACTGATTT
66 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTACTGATTT
* * * * *
34132 TGCTGCCGTAACCCTCGATCCGGTCTGACCTTAGACTAGGAATGAACTCTGTCTGCCTAAGCCAA
131 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * *** * * *
34197 TCGATGAAACGAGCGGGCAGACGGGTGGGCGGGCACTATGGTGGCTAGAGAGGCGGGATGTGCAA
196 TCAATGAAACGAGC-GGCAGACGGGCGGGCGGGCACTACGCAAGCCAAAGAGGCGGGATGCGCAA
* * *
34262 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCAATGCC
260 GCCATGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
*
34327 ATTTTTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCCTCATGTGAAGTTTCATGGCAAGA
325 ATTTTTATAGCTCGTAAATTCATACAATGGTCCCTTAAGCCCTCATGTGAAGTTTCATGGCAAGA
* * * *
34392 CGACTTGTTTTCTATTTTTCATGAGTTTCAAAACTTTTTACGGTTTGGGATTTTTTT-AAAATTT
390 CGACTCGTTTTCTATTTTTCACGAGTTTCAAAACTTTTTACGGTTCGAGATTTTTTTCAAAATTT
34456 TT-AAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGACATGCACAAAA
455 TTAAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGACATGCACAAAA
* *
34520 AAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGGGGCCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGGGACCATTTGAAAAAAGTGTACCCATTTC
* *
34585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAG
* * * *
34650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCATGTACCAACACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAACACCCATCACACAT
*
34715 CATGTGCGCACA-CCCCCCAGCCCCCCCAATCGCTAGAACTCCAATGCCGTCGATCAGGTTCTCC
715 CATGTGCGCACACCCCCCCAGCCCCCCCAATCGCTAGAACCCCAATGCCGTCGAT-AGGTTCTCC
* * *
34779 GGCGATGCTCCGGCGATGGTGGCCCGGGCGAAAAAAAATGCGACACCAGCACATGCCCAAGCCCA
779 GACGATGCTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGACACCAGCACATGCCCAAGCCCA
* * ** * *
34844 GCATGTGGACCCACAACCTTCAGTCTGGTTCGATCTTAGACTGAAAATGAACTCCGTATG
844 GCATGTGCACCCACAACCCTCAGTCCAGTCCAATCTTAGACTGAAAATGAACTCCGTATG
* *
34904 CTTAGACTGGGAAAGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGT-TCAG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG-ATCTCAG
* * *
34968 CCGGCCAGAGGGGTAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCAGCGTGC-AGTCGAT
65 CCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTACT-GAT
** ** *
35032 TCAGCTATAGGAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAG
129 TTTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAG
* *
35095 TC-ATCCCATGAAACGAGCGTGCAG
192 CCAAT-CAATGAAACGAGCG-GCAG
35119 GCGCTCAGCC
Statistics
Matches: 2524, Mismatches: 299, Indels: 146
0.85 0.10 0.05
Matches are distributed among these distances:
876 158 0.06
877 454 0.18
878 152 0.06
879 1 0.00
880 1 0.00
881 2 0.00
882 1 0.00
884 1 0.00
885 1 0.00
888 2 0.00
891 2 0.00
894 1 0.00
895 1 0.00
897 1 0.00
898 1 0.00
899 2 0.00
900 1 0.00
901 53 0.02
902 1075 0.43
903 277 0.11
904 105 0.04
905 20 0.01
906 212 0.08
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (903 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGATCTCAGC
CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTACTGATTT
TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
TCAATGAAACGAGCGGCAGACGGGCGGGCGGGCACTACGCAAGCCAAAGAGGCGGGATGCGCAAG
CCATGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
TTTTTATAGCTCGTAAATTCATACAATGGTCCCTTAAGCCCTCATGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGAGTTTCAAAACTTTTTACGGTTCGAGATTTTTTTCAAAATTTT
TAAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGACATGCACAAAAA
AATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGGGACCATTTGAAAAAAGTGTACCCATTTCA
AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGT
TCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATC
ATGTGCGCACACCCCCCCAGCCCCCCCAATCGCTAGAACCCCAATGCCGTCGATAGGTTCTCCGA
CGATGCTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGACACCAGCACATGCCCAAGCCCAGC
ATGTGCACCCACAACCCTCAGTCCAGTCCAATCTTAGACTGAAAATGAACTCCGTATG
Found at i:34921 original size:26 final size:26
Alignment explanation
Indices: 34878--34930 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34868 CTGGTTCGAT
34878 CTTAGACTGAAAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCGTATG
* *
34904 CTTAGACTGGGAAA-GAACTTCGTATG
1 CTTAGACT-GAAAATGAACTCCGTATG
34930 C
1 C
34931 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAAAATGAACTCCGTATG
Found at i:35234 original size:158 final size:159
Alignment explanation
Indices: 34904--35271 Score: 472
Period size: 158 Copynumber: 2.3 Consensus size: 159
34894 ACTCCGTATG
* * *
34904 CTTAGACTGGGAAAGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * * *
34969 CGGCCAGAGGGGTAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCAGCGTGCAGTCGATTC
66 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCAGCGTCCAGCCGATCC
*
35034 AGCTATAGGAACCCTCAGTCCGGTCTGAT
131 AGCTACAGGAACCCTCAGTCCGGTCTGAT
*
35063 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCATCCCATGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * * * *
35128 CGGCTAG-GGGGCAGTATGTGCAAG-CTGGGGATCGA-CTGGGTCCCCCTCATCGTCCTGCCGAT
66 CGGCCAGAGGGGCAGGATGCGCAAGTC-GGGGATCGATC-GGGTCCCCCTCAGCGTCCAGCCGAT
* * * * * *
35190 CCTGCTACCGTAACCCTCGGTCTGTTCTGAT
129 CCAGCTACAGGAACCCTCAGTCCGGTCTGAT
* * ** *
35221 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTAATGAAATGAGCG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCG
35272 AGCGGGCAGG
Statistics
Matches: 181, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
157 2 0.01
158 112 0.62
159 67 0.37
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCAGCGTCCAGCCGATCC
AGCTACAGGAACCCTCAGTCCGGTCTGAT
Found at i:37454 original size:26 final size:26
Alignment explanation
Indices: 37403--37455 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
37393 CCGATCCGAT
* *
37403 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
37429 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
37455 C
1 C
37456 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:40943 original size:11 final size:11
Alignment explanation
Indices: 40912--40957 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
40902 CCGCTCCAAG
*
40912 TTTTTTTTTTA
1 TTTTTTATTTA
* *
40923 TTTATTATTTG
1 TTTTTTATTTA
40934 TTTTTTATTTA
1 TTTTTTATTTA
40945 TTTTTTATTTA
1 TTTTTTATTTA
40956 TT
1 TT
40958 AGATTAGGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (11 bp):
TTTTTTATTTA
Found at i:40947 original size:15 final size:15
Alignment explanation
Indices: 40916--40957 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
40906 TCCAAGTTTT
40916 TTTTTTATTTA-TTA
1 TTTTTTATTTATTTA
40930 TTTGTTT-TTTATTTA
1 TTT-TTTATTTATTTA
40945 TTTTTTATTTATT
1 TTTTTTATTTATT
40958 AGATTAGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (15 bp):
TTTTTTATTTATTTA
Found at i:41060 original size:15 final size:14
Alignment explanation
Indices: 40988--41083 Score: 53
Period size: 13 Copynumber: 7.1 Consensus size: 14
40978 ACTTTTTACC
*
40988 TTTATTTTTTTA-A
1 TTTATTTTTTTATT
*
41001 TTTATTTTATTA-T
1 TTTATTTTTTTATT
*
41014 TTTA--TTTTT-GT
1 TTTATTTTTTTATT
* *
41025 TTTACTTTTCTT-TG
1 TTTA-TTTTTTTATT
41039 TTT-TTTTTTTATT
1 TTTATTTTTTTATT
*
41052 TTTAGTTTTATTATGT
1 TTTA-TTTTTTTAT-T
*
41068 TTTATTATTTTATT
1 TTTATTTTTTTATT
41082 TT
1 TT
41084 CTTTAAATAA
Statistics
Matches: 64, Mismatches: 11, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
11 9 0.14
12 6 0.09
13 19 0.30
14 10 0.16
15 15 0.23
16 5 0.08
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (14 bp):
TTTATTTTTTTATT
Found at i:41178 original size:59 final size:58
Alignment explanation
Indices: 41099--41498 Score: 486
Period size: 59 Copynumber: 6.7 Consensus size: 58
41089 AATAAAAATA
*
41099 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
** * * *
41157 AAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTC
1 AAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
41217 AAAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
*
41275 AAAAAAA-AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
1 AAAAAAATA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-C
* * *
41336 AAAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTC
1 ----AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * * *
41398 -GAAAAATCAATTTTTGAGAAAAAGTTGAAAGTATCAATCTTCCTCT-AAATTAAAGTTTC
1 AAAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATAAAATTTC
*
41457 AAAAGAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
41499 CTGCGCAAGA
Statistics
Matches: 297, Mismatches: 27, Indels: 36
0.82 0.08 0.10
Matches are distributed among these distances:
57 8 0.03
58 52 0.18
59 155 0.52
60 28 0.09
61 1 0.00
62 1 0.00
63 6 0.02
64 38 0.13
65 7 0.02
66 1 0.00
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:41232 original size:118 final size:118
Alignment explanation
Indices: 41099--41498 Score: 601
Period size: 118 Copynumber: 3.4 Consensus size: 118
41089 AATAAAAATA
41099 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
*
41164 GGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTC
66 AGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTC
*
41217 AAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
* *
41282 AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
66 AGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTT-C
* *
41336 AAAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTCGAA
1 ----AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC-AA
* * *
41401 AAATCAA--TTTTTGAGAAAAAGTTGAAAGTATCAATCTTCCTCT--AAATTAAAGTTTC
61 AAA-AAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCT-TGAAAATCAAAGTTTC
* *
41457 AAAAGAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
41499 CTGCGCAAGA
Statistics
Matches: 259, Mismatches: 15, Indels: 17
0.89 0.05 0.06
Matches are distributed among these distances:
117 39 0.15
118 113 0.44
119 1 0.00
121 1 0.00
122 10 0.04
123 87 0.34
124 6 0.02
125 2 0.01
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (118 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
AGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTC
Found at i:47861 original size:9 final size:8
Alignment explanation
Indices: 47846--47885 Score: 62
Period size: 8 Copynumber: 4.9 Consensus size: 8
47836 ATACTATGCT
47846 TAAAAAAA
1 TAAAAAAA
47854 TAAAAAAA
1 TAAAAAAA
47862 TTAAAAAAA
1 -TAAAAAAA
*
47871 TGAAAAAA
1 TAAAAAAA
47879 TAAAAAA
1 TAAAAAA
47886 GGAGGACTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.72
9 8 0.28
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (8 bp):
TAAAAAAA
Found at i:47865 original size:17 final size:17
Alignment explanation
Indices: 47845--47885 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
47835 AATACTATGC
47845 TTAAAAAAATAAAAAAA
1 TTAAAAAAATAAAAAAA
*
47862 TTAAAAAAATGAAAAAA
1 TTAAAAAAATAAAAAAA
47879 -TAAAAAA
1 TTAAAAAA
47886 GGAGGACTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 7 0.30
17 16 0.70
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (17 bp):
TTAAAAAAATAAAAAAA
Found at i:48936 original size:42 final size:41
Alignment explanation
Indices: 48889--49179 Score: 377
Period size: 41 Copynumber: 7.2 Consensus size: 41
48879 CATGTTTGTC
48889 GAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTA
* *
48931 GAGGAGCAATTTATTTTCCAAAAGTC---ATG-----GTTTA
1 GAGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTA
*
48965 GAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTA
* *
49006 GAGGAGCAATTTATTTTCCAAAAGTCGTGGTGCCTCTATTTA
1 GAGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTA
49048 GAGGAGCAATTTACTTTTCC-AAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTA
49089 GAGGAGCAATTTACTTTTCC-AAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTA
* * *
49130 GAGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTA
1 GAGGAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTA
49173 GAGGAGC
1 GAGGAGC
49180 TTTGGTCAAA
Statistics
Matches: 227, Mismatches: 9, Indels: 25
0.87 0.03 0.10
Matches are distributed among these distances:
33 6 0.03
34 24 0.11
36 2 0.01
39 2 0.01
41 102 0.45
42 60 0.26
43 31 0.14
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (41 bp):
GAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTA
Found at i:48969 original size:34 final size:34
Alignment explanation
Indices: 48926--49036 Score: 134
Period size: 34 Copynumber: 3.1 Consensus size: 34
48916 TGGTGCCTCT
*
48926 GTTTAGAGGAGCAATTTATTTTCCAAAAGTCATG
1 GTTTAGAGGAGCAATTTATTTTCCAAAAGTCGTG
48960 GTTTAGAGGAGCAATTTATTTTCC-AAAGTCGTGGTG
1 GTTTAGAGGAGCAATTTATTTTCCAAAAGTC---GTG
48996 CCTCTGTTTAGAGGAGCAATTTATTTTCCAAAAGTCGTG
1 -----GTTTAGAGGAGCAATTTATTTTCCAAAAGTCGTG
49035 GT
1 GT
49037 GCCTCTATTT
Statistics
Matches: 67, Mismatches: 1, Indels: 18
0.78 0.01 0.21
Matches are distributed among these distances:
33 6 0.09
34 26 0.39
36 2 0.03
39 3 0.04
41 24 0.36
42 6 0.09
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (34 bp):
GTTTAGAGGAGCAATTTATTTTCCAAAAGTCGTG
Found at i:49100 original size:83 final size:82
Alignment explanation
Indices: 48961--49179 Score: 352
Period size: 83 Copynumber: 2.6 Consensus size: 82
48951 AAAGTCATGG
48961 TTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCC
1 TTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCC
49025 AAAAGTCGTGGTGCCTCTA
66 --AAGTCGTGGTGCCTCTA
49044 TTTAGAGGAGCAATTTACTTTTCC-AAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTC
1 TTTAGAGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTC
*
49108 CAAGTCGTGGTGCCTCTG
65 CAAGTCGTGGTGCCTCTA
* *
49126 TTTAGAGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 TTTAGAGGAGCAATTTAT-TTTC-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
49180 TTTGGTCAAA
Statistics
Matches: 128, Mismatches: 3, Indels: 9
0.91 0.02 0.06
Matches are distributed among these distances:
81 1 0.01
82 37 0.29
83 52 0.41
84 38 0.30
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.36
Consensus pattern (82 bp):
TTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCC
AAGTCGTGGTGCCTCTA
Found at i:49197 original size:6 final size:6
Alignment explanation
Indices: 49186--49226 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
49176 GAGCTTTGGT
*
49186 CAAAAA CAAAAA CAAAAA -AAAAA -AAACA CAAAAAA CAAAAA
1 CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA C-AAAAA CAAAAA
49227 AAATGAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 9 0.29
6 17 0.55
7 5 0.16
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
CAAAAA
Found at i:49216 original size:16 final size:15
Alignment explanation
Indices: 49187--49229 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 15
49177 AGCTTTGGTC
*
49187 AAAAACAAAAACAAA
1 AAAAAAAAAAACAAA
49202 AAAAAAAAAACACAAA
1 AAAAAAAAAA-ACAAA
49218 AAACAAAAAAAA
1 AAA-AAAAAAAA
49230 TGAAAATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 9 0.36
16 9 0.36
17 7 0.28
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAACAAA
Found at i:49219 original size:22 final size:22
Alignment explanation
Indices: 49187--49229 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
49177 AGCTTTGGTC
49187 AAAAAC-AAAAACAAAAAAAAA
1 AAAAACAAAAAACAAAAAAAAA
49208 AAAACACAAAAAACAAAAAAAA
1 AAAA-ACAAAAAACAAAAAAAA
49230 TGAAAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.20
22 2 0.10
23 14 0.70
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (22 bp):
AAAAACAAAAAACAAAAAAAAA
Found at i:49235 original size:16 final size:14
Alignment explanation
Indices: 49187--49227 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
49177 AGCTTTGGTC
*
49187 AAAAACAAAAACAA
1 AAAAAAAAAAACAA
49201 AAAAAAAAAAACACA
1 AAAAAAAAAAACA-A
49216 AAAAACAAAAAA
1 AAAAA-AAAAAA
49228 AATGAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 12 0.50
15 6 0.25
16 6 0.25
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAACAA
Found at i:49411 original size:15 final size:15
Alignment explanation
Indices: 49382--49428 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
49372 CCCAATTCAG
49382 TTTTTATTTTGTATT
1 TTTTTATTTTGTATT
49397 ATTTTTATTTT-TATT
1 -TTTTTATTTTGTATT
*
49412 TTTTTCTTTTGTATT
1 TTTTTATTTTGTATT
49427 TT
1 TT
49429 AGGCATTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 9 0.31
15 10 0.34
16 10 0.34
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.81
Consensus pattern (15 bp):
TTTTTATTTTGTATT
Found at i:49448 original size:4 final size:4
Alignment explanation
Indices: 49435--49578 Score: 66
Period size: 4 Copynumber: 35.2 Consensus size: 4
49425 TTTTAGGCAT
* * * * * *
49435 TTTA -TTA TTTA TTTA -TTA TTACTA TGTA TTAA TATA TGTA TATC TTTA
1 TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA
* *
49483 TTTA TTTA TTTA TTT- TGTTA -ATA TTTA TATGTA TTTTA TTTA TATA
1 TTTA TTTA TTTA TTTA T-TTA TTTA TTTA T-T-TA -TTTA TTTA TTTA
* * *
49529 GTTA TATA TTTA -TTA TTATA TTATAA TTTA TTTA TTTA -TTA TTTT TTTA
1 TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA TTTA TTTA TTTA TTTA TTTA
49578 T
1 T
49579 CTTGTAATAT
Statistics
Matches: 106, Mismatches: 20, Indels: 28
0.69 0.13 0.18
Matches are distributed among these distances:
3 15 0.14
4 71 0.67
5 10 0.09
6 9 0.08
7 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:49521 original size:38 final size:35
Alignment explanation
Indices: 49440--49575 Score: 98
Period size: 38 Copynumber: 3.7 Consensus size: 35
49430 GGCATTTTAT
* *
49440 TATTTATTTA-TTATTACTATGTATTAATA-TATGTATA
1 TATTTATTTATTTATTA-T-T-TTTTAATATTATAT-TA
*
49477 TCTTTATTTATTTATTTATTTTGTTAATATTTATATGTA
1 TATTTATTTATTTA-TTATTTT-TTAATA-TTATAT-TA
* * *
49516 T-TTTATTTATATAGTTATATATTTATTATTATATTA
1 TATTTATTTATTTA-TTAT-TTTTTAATATTATATTA
49552 TAATTTATTTATTTATTATTTTTT
1 T-ATTTATTTATTTATTATTTTTT
49576 TATCTTGTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
36 8 0.10
37 26 0.32
38 35 0.43
39 12 0.15
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (35 bp):
TATTTATTTATTTATTATTTTTTAATATTATATTA
Found at i:49527 original size:21 final size:19
Alignment explanation
Indices: 49485--49527 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
49475 TATCTTTATT
*
49485 TATTTATTTATTTTGTTAA
1 TATTTATTTATTTTATTAA
*
49504 TATTTATATGTATTTTATTTA
1 TATTTAT-T-TATTTTATTAA
49525 TAT
1 TAT
49528 AGTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 1 0.05
21 12 0.60
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (19 bp):
TATTTATTTATTTTATTAA
Found at i:49547 original size:26 final size:26
Alignment explanation
Indices: 49508--49571 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
49498 TGTTAATATT
*
49508 TATATGTATT-TTAT-TTATATAGTTA
1 TATATTTATTATTATATTATA-AGTTA
*
49533 TATATTTATTATTATATTATAATTTA
1 TATATTTATTATTATATTATAAGTTA
*
49559 TTTATTTATTATT
1 TATATTTATTATT
49572 TTTTTATCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.26
26 20 0.59
27 5 0.15
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (26 bp):
TATATTTATTATTATATTATAAGTTA
Found at i:49622 original size:43 final size:42
Alignment explanation
Indices: 49554--49636 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 42
49544 TTATATTATA
49554 ATTTATTTATTTATTATTTTTTTATCT-TGTAATATTTTTTGG
1 ATTTATTTATTTATTATTTTTTTATCTAT-TAATATTTTTTGG
*
49596 ATTTATCTTA-TT-TTATTTTTAATTATCTATTAATTTTTTTT
1 ATTTAT-TTATTTATTATTTTT--TTATCTATTAATATTTTTT
49637 CTTTTTCGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
41 8 0.22
42 8 0.22
43 19 0.53
44 1 0.03
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.70
Consensus pattern (42 bp):
ATTTATTTATTTATTATTTTTTTATCTATTAATATTTTTTGG
Found at i:50492 original size:5 final size:5
Alignment explanation
Indices: 50476--50559 Score: 61
Period size: 5 Copynumber: 16.8 Consensus size: 5
50466 TTTAGTATCC
* *
50476 TTTTA -TTT- TTTTA TTTTTG TTTTA CTTTT- CTTTA TTTTA TTTTA TTTTTA
1 TTTTA TTTTA TTTTA -TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA -TTTTA
*
50526 TTTTCA CTTTTA TTTTG TTTTA --TTA TTTTA TTTT
1 TTTT-A -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
50560 CTTTAAATAA
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
3 3 0.05
4 9 0.14
5 32 0.51
6 15 0.24
7 4 0.06
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:50538 original size:12 final size:11
Alignment explanation
Indices: 50484--50541 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
50474 CCTTTTATTT
* *
50484 TTTTATTTTTG
1 TTTTACTTTTA
50495 TTTTACTTTT-
1 TTTTACTTTTA
*
50505 CTTTA-TTTTA
1 TTTTACTTTTA
*
50515 TTTTATTTTTA
1 TTTTACTTTTA
50526 TTTTCACTTTTA
1 TTTT-ACTTTTA
50538 TTTT
1 TTTT
50542 GTTTTATTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
9 4 0.10
10 8 0.20
11 18 0.45
12 10 0.25
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (11 bp):
TTTTACTTTTA
Found at i:50551 original size:13 final size:13
Alignment explanation
Indices: 50476--50559 Score: 50
Period size: 11 Copynumber: 6.3 Consensus size: 13
50466 TTTAGTATCC
*
50476 TTTTATTTTTTTA
1 TTTTATTATTTTA
*
50489 -TTT-TTGTTTTA
1 TTTTATTATTTTA
*
50500 CTTTTCTTTATTTTA
1 -TTTT-ATTATTTTA
50515 TTTTA-T-TTTTA
1 TTTTATTATTTTA
*
50526 TTTTCACTTTTATTTTG
1 TTTT-A---TTATTTTA
50543 TTTTATTATTTTA
1 TTTTATTATTTTA
50556 TTTT
1 TTTT
50560 CTTTAAATAA
Statistics
Matches: 56, Mismatches: 5, Indels: 20
0.69 0.06 0.25
Matches are distributed among these distances:
11 16 0.29
12 5 0.09
13 14 0.25
14 4 0.07
15 7 0.12
16 2 0.04
17 8 0.14
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (13 bp):
TTTTATTATTTTA
Found at i:50554 original size:18 final size:17
Alignment explanation
Indices: 50483--50559 Score: 66
Period size: 18 Copynumber: 4.2 Consensus size: 17
50473 TCCTTTTATT
*
50483 TTTTTATTTTTGTTTTA
1 TTTTTATTTTTATTTTA
*
50500 CTTTTCTTTATTTTATTTTA
1 -TTTT-TAT-TTTTATTTTA
*
50520 TTTTTATTTTCACTTTTA
1 TTTTTATTTTTA-TTTTA
50538 TTTTGT-TTTATTATTTTA
1 TTTT-TATTT-TTATTTTA
50556 TTTT
1 TTTT
50560 CTTTAAATAA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
17 4 0.08
18 27 0.55
19 9 0.18
20 9 0.18
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTTATTTTA
Found at i:50657 original size:59 final size:57
Alignment explanation
Indices: 50576--50855 Score: 332
Period size: 59 Copynumber: 4.7 Consensus size: 57
50566 ATAAAAATAA
* * *
50576 CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTT
1 CAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT
*
50633 CAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT
1 CAAAAAAAA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT
*
50693 CCAAAAAATAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT
1 -C--AAAA-AAA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT
* * *
50754 CAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT-AAATTAAAGTTT
1 CAAAAAA--AATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATAAAATTT
* *
50813 CAAAAGAATATTTTT-AGGGAAAAGTTGAAATTATCAATTTTCC
1 CAAAA-AAAATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
50856 CTACGCAAGA
Statistics
Matches: 197, Mismatches: 12, Indels: 27
0.83 0.05 0.11
Matches are distributed among these distances:
57 11 0.06
58 41 0.21
59 80 0.41
60 11 0.06
61 7 0.04
62 33 0.17
63 10 0.05
64 3 0.02
65 1 0.01
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (57 bp):
CAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT
Found at i:50724 original size:121 final size:119
Alignment explanation
Indices: 50580--50855 Score: 384
Period size: 121 Copynumber: 2.3 Consensus size: 119
50570 AAATAACAAA
*
50580 AAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAA-AAGG
1 AAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAACAA--
*
50644 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TGAAAATCAAAATTTCCAAAA-AAT
63 TTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT--AAATCAAAATTT-CAAAAGAAT
*
50702 AAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAATCAATT
1 AAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAA-CAATT
* *
50767 TTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCTAAATTAAAGTTTCAAAAGAAT
65 TTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCTAAATCAAAATTTCAAAAGAAT
* *
50822 --AT-TTTTAGGGAAAAGTTGAAATTATCAATTTTCC
1 AAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
50856 CTACGCAAGA
Statistics
Matches: 143, Mismatches: 7, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
117 30 0.21
118 2 0.01
119 5 0.03
120 13 0.09
121 80 0.56
122 11 0.08
123 2 0.01
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (119 bp):
AAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAACAATTT
TTGAGGAAAAGTTGAAAGTATCAATCTTCCTCTAAATCAAAATTTCAAAAGAAT
Found at i:53145 original size:873 final size:877
Alignment explanation
Indices: 51333--65547 Score: 15985
Period size: 891 Copynumber: 16.1 Consensus size: 877
51323 GTTATGACAA
* *
51333 CTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTCA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
51397 TGAGGCATA-GGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACATC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--
* * * *
51461 CCCCCAGCCGCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGATGATGCTCCGAC
129 CCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
* * ** * *
51526 GATGGTGCCCCGGGCGAAACAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGC
194 GATGGTGCCCGGGGC-AAAAAAAAT-TACCA-CAGCACATGCCCTAGCCCAGCATGTGCACCCGC
* * *
51591 AACCCTCAGTCA-GG--TCCGAT-CTTCGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCAC
256 AACCCTCGGTCACGGAATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * ** * * * *
51652 TAAACAAGCATGCAGATGCTCAACTGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGGTCGGG
321 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGG
*
51717 TCCCCCTCA----GC--CT-G---CTG---CCGCAACCCTCGGTCCGATC-GAATCTTAGACTGG
386 TCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTG-ATCTTAGACTGG
* * ** *
51768 GAATGAACTCCGTATGCCTAAGCCAACTGACGATACGAGCATGCAGGCGGGCGGGCACTACGCCG
450 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
* *
51833 GCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTC
515 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
51898 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
580 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
51963 CATGCGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGG
645 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * * * * *
52028 TTTGAGATTTTTTTTAAATTTTTTCAGAAGGATTTTTGGCCCCAAATTTGGTAGATGTTATCCTT
710 TTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
52093 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACC
775 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
52158 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
840 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
52196 CTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCAAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
52261 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCACACATCATGTGCACACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
52326 CCTCGGCCCCCCCAATCGTCAGAACCCCAATGTCGCCGGTCAGATTCTCCGACGATGCTCCGACG
131 CC-CGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
** * * * *
52391 ATGGTGCCCGGGGCAAAAAAAATTACCAGTGCATATGCCCTAGCCCAGCATGTTCACTCACAACC
195 ATGGTGCCCGGGGCAAAAAAAATTACCACAGCACATGCCCTAGCCCAGCATGTGCACCCGCAACC
**
52456 CTCGGTC-C-G-ATCCGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAA
260 CTCGGTCACGGAATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * *
52517 CGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTAGGATGCGCAACCCGAGGATCAGTCGGGTCCC
325 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * * * * *
52582 TCTCAGCGTGCTGCT-GATCTTGCTACCGTAACCCTTGGTCCGGTCTGATCTTAGAGTTGGAATG
390 CCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * * *
52646 AACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGAGGGTGGGCGGGCACTACGCCGGCTAG
455 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAG
* * *
52711 AGAGGCGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGCGTTTTGGCACATCTTCATATT
520 AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
52776 TCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
585 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* * * *
52841 GAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACTATTTTCGAAACTTTTTACGGTTCGG
650 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGG
* *
52906 GATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATT
715 GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
52971 TTTTTTGGCATGCTCAAAAAAATTCAGCAAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTG
780 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* *
53036 AAAAAAGTGTCCTCATTTCGGACACTTTAATGG
845 AAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
53069 CTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
53134 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGCGCGCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * * * * *
53199 CCCCGGCCCCCCCAATCGTCAGAACACCAATGTCGTCGGTCAGGTTCTTCGATGATGCTCCGACG
130 CCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
* **** **
53264 ATGGTGCCCCGGGCGAAAAAAAATTACGGGTGCACATGCCCTAGCCCAGCATGTGCACTTGCAAC
195 ATGGTGCCCGGGGC-AAAAAAAATTACCACAGCACATGCCCTAGCCCAGCATGTGCACCCGCAAC
** * *
53329 CCTTAGTC-CGG--TCCAAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
259 CCTCGGTCACGGAATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * ** *
53390 ACGAGTGTGCGGGCGCTCAGCCAGCCAGTGGGGTAGGATGCGCAACCCGGGGATCGACCAGGTCC
324 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCC
* * * * *
53455 CTCTCAGCGTGCTGC-CGATCCTGCTACTGCAACCCTTGGTCTGGTTTGATCTTAGACTGGGAAT
389 CCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* * * *
53519 GAACTCTGTATGCCTAAGCCAATCGACGAAACGAGCGGGAGGGCGGG-GGGCACTACGCCGGCTA
454 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCA
* * * *
53583 GAGAGGTGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGCGTTTTGGCACATCTTCATAT
519 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
53648 TTCTACCAAGCCAATGCCA-TTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATG
584 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* * ** **
53712 TGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGGTTTTCAAAACTTTTTATAGTTCG
649 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
* * * * *
53777 AGATTTTTTTATAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATAGTAGACTTGATCCTTGTAT
714 GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* ** * *
53842 TTTTGTTGGCATGTTCAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAGCATTT
779 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
*
53907 GAAAAATGTGTCCCCATTTCAGACACTTTAATGG
844 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
53941 CTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
54006 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * ** * *
54071 CCTGCCCCGTACCCCCAATCGTTGGAA-CCC--TACTACC--TCAGCTTCTCCAACGA---T--G
131 CCCG-GCC---CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* *
54126 --G-T-G-GCTCGGGTG-AAAAAAAA-TACGGCACCAGCACAT-ACCTGAGCCCAGCATGTGCAC
192 ACGATGGTGCCCGGG-GCAAAAAAAATTAC--CA-CAGCACATGCCCT-AGCCCAGCATGTGCAC
* * * * * * *
54183 CTGCAATCCTTGGTC-TGG--TCCAAT-CTTAGACTGGGAATGAACTCCATATGTCTAAGTCAAC
252 CCGCAACCCTCGGTCACGGAATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** * * * *
54244 ATACGAAATGAGCGTGCAGGCGCTCAGCCGCGCCAGAGAGGTAGGATGCGCAAGCCGGGGATCGG
317 CCACGAAACGAGCGTGCGGGCGCTCAGCCG-GCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGG
* * * * **
54309 T-GAGGTCCCCCTTAGC---ATGCT--A--CTG-----G-AACCCTCTGTCTGGTCCAATCTTAG
381 TCG-GGTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAG
* * * * *
54360 ATTGGGAATGAACTCCGTATGCCTAAACCAATCGACGAAACAAGCGGGCAGGCGGGCGGGCA-TA
445 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTA
* * ** *
54424 CGCTGGCCAGAAAAACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
510 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
54489 TCTTCATATTTCTGCCATGCCAATACCATTTTTATGGCTTTTAAATTCATACAATGATCCCTTAA
575 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
54554 GCCTTCATGTGAAGTTTCATGGCAATACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
640 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * * *
54619 TATGGTTCGAGATTTTTTAAAAAATTTTTCAGATGGATTTTTGGCCCCAAACTTGGTAGATGTGA
705 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
54684 TCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAGGATTTTG
770 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
* *
54748 TGATCGTTTGAAAAAAGTGTCCCCATTTCA-ATCACTTTAATGG
835 TGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGG
* * * *
54791 CTACTGGTAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTAA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
54856 TGAGGGATAGGGGGCCAATATAAGGGCCAAGCACTAGCACTCATCGCACATCATGTGCGCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * **
54921 CCCAGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGTGA
131 CCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
* ** * ****
54986 TGGTGGCCCGGGG--GAAAAAATGTGGCACCAGCAAATGATGAAGCCCAGCATGTGCACCCGCAA
196 TGGT-GCCCGGGGCAAAAAAAAT-TACCA-CAGCACATGCCCTAGCCCAGCATGTGCACCCGCAA
* * * * * *
55049 CCCTTGGTC-TGG--TCCAAT-CATAGACTGGGAATGAACTCCGTATGCCTAAGCCAGCCCACGA
258 CCCTCGGTCACGGAATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * ** * * * * * *
55110 AACGAGAGTGTGGCCACTTAATCGGCTAGAGGGGCATGATGCGCAAGCTGGGGATCGGTTGAGTT
323 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * * * * *
55175 CCCCTCAGTGTGCT-ATCAATCCTGCTATCGTAACACGCAGT-CGGATCTGATCTTAGACTAGGA
388 CCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCGGTCCGG-TCTGATCTTAGACTGGGA
* * * *
55238 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGATCCGGCGGGCAGGCGGGCACTATGCCGGC
452 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGC
55303 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
517 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
55368 ATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
582 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
55433 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAACTTTTTACGGTT
647 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
55497 CGGGA-TTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
712 CGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
55560 ATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
777 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
55624 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
842 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
55660 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
55725 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGAGCGCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * * * * *
55790 CCTCCGGCCCCCCTAATCGTCAGAACCCCAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCGAC
130 CC-CCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
* * * * * *
55855 GATGGTGGCCC-GGGCAAAAAAAAATGCGGCACCAGCACATTCCCGAGCCTAGCATGTGCACCTG
194 GATGGT-GCCCGGGGCAAAAAAAATTAC--CA-CAGCACATGCCCTAGCCCAGCATGTGCACCCG
*
55919 CAACCCTCAGTCCAGTCCGATGTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATAAAC
255 CAACCCTC-G----GT-C--------AC--GGAAT---C-C-G-ATGCTTAGACTGGGAATGAAC
* * * ** * * * *
55984 TCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTACTCAGGCAGCCAGAAGGGCAAGAT
298 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * * * * * * **
56049 GCGCAAGCCGTGGATCGGCCGGGTCCCCATCAACGTGCT-ATCGATCTTACTACTTCAACCCTCG
363 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCG
* * *
56113 GTCCAGTCTGATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG
428 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * *
56178 C-GGCGGGCGGGCACTATGCCGGGCAGAAAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGT
493 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
56242 AGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
558 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
56307 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
623 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
56372 TGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCC
688 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
56436 AAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCG
753 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
56499 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
818 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
56559 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
56624 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* *
56689 CCCCGG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGACG
130 CCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
* * * *
56753 ATGGTGGCCC-GGGCGAAAAAAAA-TGCGGCACCAGCACATG-CCTGAGCCTAGCATGTGCAGCA
195 ATGGT-GCCCGGGGC-AAAAAAAATTAC--CA-CAGCACATGCCCT-AGCCCAGCATGTGCACCC
* * *
56815 GCAACCCTCAG-C-C--AAGTCTGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACC
254 GCAACCCTCGGTCACGGAA-TCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * ** * * *
56875 CACGAAATGAGCGTACGGGCGCTCAGCTAGCCAAAGGGGCAGGATGCGTAAGCCAGGGATCGGTC
318 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC
* * *** * ** * **
56940 GGGTCCCCCT-AGCATGCTAC-CGATCCTG-TTGTGACAACCCTCGATTTGATCCAATCTTAGAC
383 GGGTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCG-CAACCCTCGGTCCGGTCTGATCTTAGAC
* * * * *
57002 TTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACAAACGGGCGGGCGGGCGGGTACTACG
447 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACG
* *
57067 TCGACCAGAGAGGCGGGATGCGCAAGTCC-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
512 CCGGCCAGAGAGGCGGGATGCGCAAG-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
57131 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATACATACAATGGTCCCTTAAG
576 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
57196 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
641 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * * *
57261 ACAGTTCAGGATTTTTTTAGAATTTTTTCAGAAGTAGTTTTGGCCCCATACTTGGTAGATGTGAT
706 ACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
** * ** *
57326 CCTTACATTTTTGTTGGCATGCACAAAATCATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGC
771 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
*
57391 GACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGG
836 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* ** *
57433 CTACTAGCAGCAAACCCATAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
57497 TGAGGGATAGGGGGCGAATATAAGGGCCAAGCACTAGCACCCATCGCATATCATGTGCGCACA--
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
57560 CCC-TCACCCCCTATCGTCGGAACCCCAATGTCGCTGGTCAGGTTCT-C--C---G----G-CGA
131 CCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
* * * * *
57613 TGGTGCCCCGAGTG-AAAAAAAA-TGCGGCAACAGCACATGCTCGAGCCCAGCATGTGCACCCAC
196 TGGTG-CCCG-GGGCAAAAAAAATTAC--C-ACAGCACATGCCCTAGCCCAGCATGTGCACCCGC
* * * * *
57676 AACCCTCAGT-TC--AATTCGAT-CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACTCAC
256 AACCCTCGGTCACGGAATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
** * * * * * * * * *
57737 GAAATAAACGTGCGGGCACTCAGTCGACTAGAGGGGCAAGATGTGCAAGCCAGGGATCGATCGGA
321 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGG-
* * ** * *
57802 G-CCCCCTCTGCGTGCTG-TCGATCCTGCTGCCATAACCCTCAGTCCGGTTTGATCTTAGACTGG
385 GTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
* * * * * * * *
57865 GAATGAACTTCGTATGCCTAAGCCAACTGACGAAACGAGCGAGCGAGCGAGCAGGCATTACGCTG
450 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
* *
57930 GCCAGAGAGGCGGGATGCGCAA-CCTGTGGATCAATAGGGTGGTAGGTGGGTTTAGACACATCTT
515 GCCAGAGAGGCGGGATGCGCAAGCC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
57994 CATATTTCTGCGATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCT
579 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
58059 TCATGTGAAGTTTCATGGCAAGACAACTCGTTCTCTATTTTTCACGATTTTTGAAACTTTTTTAT
644 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTAC
* * * * *
58124 GGTTTGGGATTTTTTTTAAAATTTTTTCTGAAGGGGTTTTGGCCCCAAACATGGTAGAAGTGATC
708 GGTTCGGGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
58189 CTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
772 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
58253 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
837 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
** * *
58294 CTACTGGCAG-AAACCTCCAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTTGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * * *
58358 TAAGTGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCTCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * * * *
58423 CCCCGACCCCCCCAATCG-CTGGAACCCTAATGCCGTCGGTCAAGTTCT-CTAGCGATGCTCCGA
130 CCCCGGCCCCCCCAATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGA
* * * ** * * * *
58486 CGATGTTACCCCGGGTGAAAAAAAAATTTGGCACCAACACATGCTCGAGCCCAGCATGTGCACCT
193 CGATGGT-GCCCGGG-GCAAAAAAAA-TTACCA-CAGCACATGCCCTAGCCCAGCATGTGCACCC
* * * *
58551 GCAACCCTTGATC-C--AGTCCGAT-CATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
254 GCAACCCTCGGTCACGGAATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
58612 ACGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGTCAGGGATTGGTCG
319 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCG
* * * * * * * *
58677 GGTCACCCTCAGCGTGCTAC-CGATCCTGCTGCCACAACCCTCAGTCTGGTCTAATCTTAGACTA
384 GGTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
* *
58741 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCATTACGCC
449 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCC
* * * * *
58806 AGCTAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTT
514 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
58871 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
579 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
58936 TCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTATG
644 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
** * *
59001 GTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTGCCAAACTTGGCAAACGTGATCCT
709 GTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
59066 TGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAA-TGTGAAGTGTACAGGATTTTGTGA
774 TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT-CGAAGTGTACAGGATTTTGTGA
59130 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
838 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
59170 CTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
** * *
59235 TGAGGGATAGGGTCCCAATATAAGGGCCAAGTACCATCACCCATCGCACATCATGTGCACACA-C
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
59299 CCCGCCCGCCCCCCAATCG-CTGGAACCCCATTGCCGTCGGTCAGGTTCTCCGACGATGGCGCC-
131 CCCG-GC-CCCCCCAATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT-GCTCCG
* ** * * *
59362 TCG-T-GT-------G-AAAAAAAATGTGGCACCAGCACATG-CCTGAGCCAAGCATTTGCACTC
192 ACGATGGTGCCCGGGGCAAAAAAAAT-TACCA-CAGCACATGCCCT-AGCCCAGCATGTGCACCC
* *
59416 ACAACCCTTGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAA
254 GCAACCC----T-CG----G-TC----AC---G---GAA-TCCG-ATGCTTAGACTGGGAATGAA
* * * *
59481 CTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAAGTGCAGGA
297 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
** * * * *
59546 TGCGCAAGCCAAGGATCGGTCGGGTCCCCCTCAGCGTGCAG-TCGATCCTGCTACTGTAACCCTT
362 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTC
* *
59610 GGTCTGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
427 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* *
59675 GCGGGCGAGCGAGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
492 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
59740 TATGTGGGTTTAGGCACATCTTCATATTTCTGCCACT-CCAATGCCATTTTTATGGCTTGTAAAT
557 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA-TGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
59804 TCATACAATGTTCCCTTAAGCCTTCATGTGAAGTTTTATGACAAGACGACTCGTTTTCTATTTTT
621 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * ** * *
59869 CATGATTTTGGAAA-TGTTTTACGGTTTAGGATTTTTTTTAAATTTTTTCAGATGGAGTTTTGGC
686 CACGATTTTTGAAACT-TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
* * *
59933 CCCAAACCTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAC
750 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
59998 TCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTATAATGG
815 TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
60061 CTATTGGCAGCAAACCTGTAAAATTTCAAATGGTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
60126 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACACACATCATGTGCGCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
60191 CCCTCGCCTCCCCCAATCATTGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CG--G----G--
131 CCC-GGCC-CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
* *
60245 GATGGTGCCCCGGGCGAAAAAAA-TACGACACCAGCACATG-CCTGAGCCCAGCATGTGCA-CCG
194 GATGGTGCCCGGGGCAAAAAAAATTAC--CA-CAGCACATGCCCT-AGCCCAGCATGTGCACCCG
*
60307 CAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCTTATA-TAGGGAATGAA
255 CAACCC----T-C-G---G-TC----AC---G---GAA-TCCG-ATGCTTAGACT-GGGAATGAA
* * * * * *
60371 CTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGACAAGA
297 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
* ** * * *
60436 TGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCATTGCGCTGC-CGATCCTGCTGCCACAACCCTC
362 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTC
* *** * * * * * * *
60500 AGTTTTGTCCGATCTTATA-TCAGGAATGAACTCCGTATGCCTAAGCTAACTGATGAAATGAGCG
427 GGTCCGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * * * *
60564 GGCGGGCGGGCGAGCACTACGCTGGCCAGAGAGGTGAGATGCGTAAGCCATCGATCGATAGGGTG
491 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
** *
60629 GTAGGT-GGTTTAGGTGCATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGGTTGTAAAT
556 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
60693 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTT
621 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
60758 CACGCTCTTTGAAACGTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCC
686 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* * *
60823 CCAAACTT-GTAGACATGATCGTTGTATTTATTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
751 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
60887 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAAGGG
816 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * * *
60949 CTACTGGCAGCAAACCTATAAAATCTGAAATGCTCTTTAA-GGGGTGTGAGTTCCCAAGGTTTGT
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
61013 TG-GAGGATAGGGGGCCAATATAAGGGCCAAGTAACGCAGCACCCATCGTACGTCATGTGCGCAC
66 TGAG-GGATAGGGGGCCAATATAAGGGCCAAGT-AC-CAGCACCCATCGCACATCATGTGCGCAC
* * * * * * *
61077 ACCCCCCG-CCCCCCAATTGTCGAAACCCCAATGCCGTCTGTCAGGTTCTCCGACGATGGTGCCT
128 ACCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CCG
*
61141 A-G--GGT-------G-AAAAAAAA-TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
192 ACGATGGTGCCCGGGGCAAAAAAAATTAC--CA-CAGCACATGCCCTAGCCCAGCATGTGCACCC
* * *
61194 GAAACCCTCAATCTGATCTGATCTTAGACTGGGAATGAACTCCATATGTTTAGACTGGGAATGAA
254 GCAA-CC-C--TC-G----G-TC----AC---G---GAA-TCC-GATGCTTAGACTGGGAATGAA
* * * *
61259 CTTCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCGGGCGCTCAGTCGGCCAGA-GGGTAGGA
297 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
* * * * * * **
61323 TACGCAAGCCGGGGATCGGTGGGGTCCCCCTCCGCGTGCTG-TCGGTCTTACTAGTGCAACCCTC
362 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTC
* * *
61387 GGTTCGGTCTGATTTTAGACTGGGTTATGAAACTCCGCTATGCCTAAGCCAACCGACGAAACGA-
427 GGTCCGGTCTGATCTTAGACTGGG-AATG-AACTCCG-TATGCCTAAGCCAACCGACGAAACGAG
** * *
61451 ATGGCGGGCCGGGCGGGCACTATGCCGGCCAGAGA-GCGGGAGATGCGCAAGCCGAGGATCTGAT
489 CGGGCGGG-CGGGCGGGCACTACGCCGGCCAGAGAGGC-GG-GATGCGCAAGCCGTGGATC-GAT
*
61515 AGGGTCGGTAGGT-GGTTTAGGCACATCTTCATATTTCTG-CAGTGCCAATTACCATTTTTAT-G
550 AGGGT-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA-TGCCAA-TGCCATTTTTATGG
61577 CTTGTAAATTTCATACAATGCGTCCCTTAAGCCATTCATGTGAAGTTTCATGGCAAGACGACTCG
612 CTTGTAAA-TTCATACAATG-GTCCCTTAAGCC-TTCATGTGAAGTTTCATGGCAAGACGACTCG
* **
61642 TTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTTAAAATTTTTTCAGA
674 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTTAAAATTTTTTCAGA
** * * *
61707 AGGAGTTTTGGCCGTAAACTTAGTTGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAT
738 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
61772 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
803 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
61837 ACTTTAATGG
868 ACTTTAATGG
* *
61847 CTACTGGCAGCAAACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
61912 TGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCCCACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
** *
61977 CCCCCCGCCCCCCAATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG----G-C-
131 CCCGGC-CCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
* * **
62036 A----ACCCGTGTGG-AAAAAAAAGTGGCACCAGCACATG-CCTGAGCCAAGCATTTGCATTGGT
195 ATGGTGCCCG-G-GGCAAAAAAAATTACCA-CAGCACATGCCCT-AGCC---CA---GCA-T-GT
* * * * *
62095 G-ACCCCCGATCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAGGGAATGAAC
248 GCACCCGC-AACC--CTCGGTC----AC--GGAAT---C--CG-ATGCTTAGACTGGGAATGAAC
** * * *
62159 TCCGTATGCCTAAGTCAACCCACGAAACGAATGTGCGGGTGCTCAGCTGGCCAGAGGTGCAGGAT
298 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * * *
62224 GCGTAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTG-TCGATCCTGCTACCACAACCCTTG
363 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCG
* * * * *
62288 GTCTGGTCTAATCTTAGATTGGAAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGG
428 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * *
62353 CGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATGGATAGGGTGGT
493 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
62418 AGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATTTTTATGGCTTGTAAATTC
558 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
62483 ATACAATGGTCCCTTAAGCCTTCATGTCAAGTTTTATGACAAGACGACTCGTTTTCTATTTTTCA
623 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
62548 TGATTTTGGAAACGTTTTACGGTTCAGGATTTTTGTAAAATTTTTTCAGATGGAGTTTTGGCCCC
688 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* * **
62613 AAACTTGGTAAACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTTTGCTAAAAACTCG
753 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
62678 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTC-GAACACTATAATGG
818 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGG
* * * *
62738 CTATTGGCAGCAAACCTGTAAAATCTCAAATGGTCTTTAAGGGGTTGTTAGTTCTCGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
62803 TGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATGATGTGCGCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
62868 CCCCGCCTCCCCCAATCGTTGGAACCCCAATGCCGCCGGTCAGGTTCT----C--TG----G--G
131 CCCGGCC-CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
* * * * **
62921 ATGGTGCCCCGGGCGAAAAAAA-TACGACACCAGCACATGCCCGAGCCCAGTATGTGCACCCATA
195 ATGGTGCCCGGGGCAAAAAAAATTAC--CA-CAGCACATGCCCTAGCCCAGCATGTGCACCCGCA
**
62985 ACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAATGAACTC
257 ACCC----T-CG----G-TC----AC---G---GAA-TCCG-ATGCTTAGACTGGGAATGAACTC
* * * * * *
63050 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCACTCAGCCAGCCAGAGGGGCAAGATGT
300 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
**** * **** *
63115 GCAAGCCGGGGATCGGTCGGGTCCCCCTCATTACGCTGC-AGATCCTGCTGGTACAACCCTCAGT
365 GCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCGGT
* * ** * *
63179 TCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAAC-AGACGGGC
430 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGGC
* * * *
63243 GGGCGGGCGAGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
494 GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** * *
63308 GGT-GGTTTAGGTGCATCTTCTTATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
559 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
63372 AAGAATGGTCCCTTAAGCCTTCATGTGACGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
624 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* *
63437 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
689 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * *
63502 AACTTGGTAGACGTGATCCTTGTATTTATTTTGGAATGCACAAAAAAATTCACCTAAAAACTCGA
754 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
63567 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGG
819 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
63626 CTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTCAA-GGGGTGTGAGTTCCCGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
63690 TGGGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--
* * * * * *
63755 CCGCCCCGCCCCCCAAAT-GTCAGAACCCCAATGCCGTCGATCAAGTTCT-C--CG--G-T----
129 CC-CCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
*
63809 -GATGGTGCCCCGGGTG-AAAAAAAA-TACGACACCAGCACATGCCCAAGCCCAGCATGTGCACC
193 CGATGGTG-CCCGGG-GCAAAAAAAATTAC--CA-CAGCACATGCCCTAGCCCAGCATGTGCACC
* * *
63871 CGTAACCCTCAATCTGATTCGATCTTAGACTGGGAATGAAATCCGTATGTTTAGCCTGGGAATGA
253 CGCAA-CC-C--TC-G----G-TC----AC---G---G-AATCCG-ATGCTTAGACTGGGAATGA
* * * * * *
63936 ACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGTGCACAGCCGGCCAGA-GGGTAGG
296 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGG
** * * * * *
64000 ATATGCAAGCCGGGGATCGGTAGGGTCCCCCTCTGCGTGCTG-TCGGTCCTTACTACTGCAAACC
361 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCTCGATCC-TGCTACCGC-AACC
* * *
64064 CTCGGTTTCGATCTATGATCTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGGCGAAA
424 CTCGG-TCCGGTC--TGATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA
* * * * * * *
64129 ACGAACGGAAGCGGG-GAGCAGCGGGCACTACGCCGGCCAAAGAGGTGAGATACGTAAGTCGTGG
484 ACGAGCGG--GCGGGCG-G--GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
64193 ATCGATAGGGTGGTAGGTGGGGTTAGGCACATCTTCATATTTCTG-CAGTGCCAATACCATTTTT
544 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA-TGCCAATGCCATTTTT
64257 ATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTATCATGTGAAGTTTCATGGCAAGACGACT
608 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-TCATGTGAAGTTTCATGGCAAGACGACT
* **
64321 CGTTTTCTATTTTTCACAATTTTCAAAACTTTTTA-GGTTCGGGATTTTTTTAAAATTTTTTCAG
672 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAG
* *
64385 AAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAA
737 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
64449 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
802 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
64514 CACTTTAATGG
867 CACTTTAATGG
* * * * *
64525 CTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCCTTAAGGGGGTGTGATTTCTGGAGGTTTCA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * * *
64590 TGAGGGATAGGGGGCCGATATAAGGGCCAAGTGCCAACACCCATGGTACATCATGTGCGCACACC
66 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * ** * * *
64655 CCCCGCCCCCCCAATCGTTGAAACCCGAAAACTGTCGGTCAAGTTCT----C--TGCT------A
131 CCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
* * * * * *
64708 TTGTGCCCCGGGCAAAAAAAAATTAGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAT
196 TGGTGCCCGGGGC-AAAAAAAATTA-CCA-CAGCACATGCCCTAGCCCAGCATGTGCACCCGCAA
* *
64773 CCCTCGATCCGATCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCT
258 CCCTCG----G------TC----AC---G---GAA-TCC-GATGCTTAGACTGGGAATGAACTCC
* * * *
64838 GTTTGCCTAAGTCAACCCATGAAACGAGCGTGCTGGTGCTCAGCCGGCCAGAGGGGCAGGATGCG
301 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
* * * * * * * *
64903 CAAGCAGGGGATCAGTCGCGTCCCCCTCAACGTGCT-ATCGATCCTGCTGCCACAACCCTTGGTC
366 CAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCGGTC
** * * * ** *
64967 CGGTCCAATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCAACCAATGAAATTA----GTGG
431 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
*
65028 GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATGGATAGGGTGGTAGG
496 GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
65093 TGGGTTTAGGCACATCTTCAAATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCTTA
561 TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
65158 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGA
626 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
65223 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTTGAAATTTTTTCA-AAGGACTTTTGCCCCCAAA
691 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
** * * * *
65287 CTTGGGTAGACG-GATGTTTCTATTTGGTTTTT-GTATGGCACAAAAAAATTCAACCTAAAAACG
756 CTT-GGTAGACGTGATCCTTGTATTT--TTTTTGGCAT-GCACAAAAAAATTC-AGCTAAAAACT
*
65350 CGAAGTGTATTAGGATTTTGTTGGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTTAAT-
816 CGAAGTGTA-CAGGATTTTG-T-GACCATTTGAAAAAAGTGTCCCCATTTCAGACAC-TTTAATG
65413 G
877 G
* *
65414 CCACTGGCAGCAAACCTGTAAAATCTCAAAATGCTTCTTTTAAGGGGGTGTGAGTTCTTGAGGTT
1 CTACTGGCAGCAAACCTGTAAAATCTC-AAATGC-TC-TTTAAGGGGGTGTGAGTTCTCGAGGTT
65479 TGATGAGGGATA-GGGGCCAATATAAGGGCCAAAGTACCAGCA-CCATCGCGACATCAGTGTGCG
63 TGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGC-ACATCA-TGTGCG
65542 CACACC
125 CACACC
65548 GC
Statistics
Matches: 11616, Mismatches: 1339, Indels: 764
0.85 0.10 0.06
Matches are distributed among these distances:
846 15 0.00
847 3 0.00
849 7 0.00
850 367 0.03
851 174 0.01
854 1 0.00
856 4 0.00
858 8 0.00
859 207 0.02
860 392 0.03
861 441 0.04
862 121 0.01
863 52 0.00
864 104 0.01
865 131 0.01
866 1 0.00
867 5 0.00
868 1 0.00
869 244 0.02
870 164 0.01
871 482 0.04
872 600 0.05
873 864 0.07
874 362 0.03
875 95 0.01
876 118 0.01
877 576 0.05
878 10 0.00
879 3 0.00
880 1 0.00
881 8 0.00
882 6 0.00
883 221 0.02
884 42 0.00
885 17 0.00
886 50 0.00
887 261 0.02
888 622 0.05
889 618 0.05
890 512 0.04
891 1059 0.09
892 220 0.02
893 77 0.01
894 56 0.00
895 113 0.01
896 110 0.01
897 387 0.03
898 453 0.04
899 724 0.06
900 361 0.03
901 127 0.01
902 2 0.00
904 1 0.00
905 5 0.00
906 7 0.00
907 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
TGGTGCCCGGGGCAAAAAAAATTACCACAGCACATGCCCTAGCCCAGCATGTGCACCCGCAACCC
TCGGTCACGGAATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
CTCAGCGTGCTGCTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG
ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGG
Found at i:55991 original size:26 final size:26
Alignment explanation
Indices: 55941--55992 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
55931 CAGTCCGATG
* **
55941 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATAAACTCCATATGC
55967 TTAGACTGGGAATAAACTCCATATGC
1 TTAGACTGGGAATAAACTCCATATGC
55993 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCATATGC
Found at i:59467 original size:26 final size:26
Alignment explanation
Indices: 59438--59490 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
59428 CCGATTCGAT
*
59438 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
59464 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
59490 C
1 C
59491 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:60357 original size:26 final size:26
Alignment explanation
Indices: 60328--60380 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
60318 CCGGTCTGAT
* *
60328 CTTAGACT-GGGAATGAAGTCCGTATG
1 CTTAGA-TAGGGAATGAACTCCATATG
*
60354 CTTATATAGGGAATGAACTCCATATG
1 CTTAGATAGGGAATGAACTCCATATG
60380 C
1 C
60381 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCATATG
Found at i:62144 original size:26 final size:26
Alignment explanation
Indices: 62115--62167 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
62105 CCGGTTCGAT
* *
62115 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
62141 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
62167 C
1 C
62168 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:63033 original size:26 final size:26
Alignment explanation
Indices: 63004--63056 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
62994 CCGATCTGAT
**
63004 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
63030 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
63056 C
1 C
63057 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:63924 original size:26 final size:26
Alignment explanation
Indices: 63895--63945 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
63885 TGATTCGATC
63895 TTAGACTGGGAATGAAATCCGTATGT
1 TTAGACTGGGAATGAAATCCGTATGT
* * *
63921 TTAGCCTGGGAATGAACTCTGTATG
1 TTAGACTGGGAATGAAATCCGTATG
63946 CCTAAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCGTATGT
Done.