Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168359.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_58, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 144159
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Warning! 1000 characters in sequence are not A, C, G, or T
File 3 of 4
Found at i:80051 original size:48 final size:48
Alignment explanation
Indices: 79957--80051 Score: 106
Period size: 48 Copynumber: 2.0 Consensus size: 48
79947 AATTTTTTAC
* * *
79957 CAATACTTATTAATAATAATAATAATATTTATTGTTAATAATATTAAT
1 CAATACTTATTAATAATAATAATAATATATATTATTAATAACATTAAT
*
80005 CAATA-TTATTAATTAATAAT-TTAATATAATATTATTAA-ATACATTAA
1 CAATACTTATTAA-TAATAATAATAATAT-ATATTATTAATA-ACATTAA
80052 AATTGATTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
47 14 0.35
48 26 0.65
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (48 bp):
CAATACTTATTAATAATAATAATAATATATATTATTAATAACATTAAT
Found at i:80115 original size:27 final size:23
Alignment explanation
Indices: 80062--80115 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 23
80052 AATTGATTAT
80062 ATATTAATTATAATATTATATTG
1 ATATTAATTATAATATTATATTG
80085 -TATTATATTATTAATTATTATATATG
1 ATATTA-ATTA-TAA-TATTATAT-TG
80111 ATATT
1 ATATT
80116 GTTTATCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
22 5 0.19
23 4 0.15
24 3 0.12
25 8 0.31
26 2 0.08
27 4 0.15
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
ATATTAATTATAATATTATATTG
Found at i:81370 original size:19 final size:18
Alignment explanation
Indices: 81346--81385 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
81336 ATTTAGTTAT
81346 TAATATTTATAA-ATTAATA
1 TAATATTTA-AATATTAA-A
81365 TAATATTTAAATATTAAA
1 TAATATTTAAATATTAAA
81383 TAA
1 TAA
81386 ACGATTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATATTTAAATATTAAA
Found at i:82117 original size:23 final size:22
Alignment explanation
Indices: 82086--82132 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
82076 ATGTTATTAT
82086 TATACTTAATTATTTATAAATAAA
1 TATACTTAATTATTT-T-AATAAA
82110 TATA-TTAATTATTTTAATAAA
1 TATACTTAATTATTTTAATAAA
82131 TA
1 TA
82133 CAATTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.35
22 1 0.04
23 10 0.43
24 4 0.17
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
TATACTTAATTATTTTAATAAA
Found at i:82454 original size:18 final size:20
Alignment explanation
Indices: 82431--82468 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
82421 TCAAATAAGC
82431 TTGTATGAT-A-AAAAAAAA
1 TTGTATGATGACAAAAAAAA
*
82449 TTGTATTATGACAAAAAAAA
1 TTGTATGATGACAAAAAAAA
82469 AGGTCATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 1 0.06
20 8 0.47
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.29
Consensus pattern (20 bp):
TTGTATGATGACAAAAAAAA
Found at i:82790 original size:181 final size:179
Alignment explanation
Indices: 82310--82865 Score: 495
Period size: 177 Copynumber: 3.1 Consensus size: 179
82300 ATTTGAGATT
* * * *
82310 GATAATTGTTCAAATAGTCATAATTATTTGAGCTAGTTTC-ATAAACAGATTTATTGTTTAAATC
1 GATAATTGTTCAAATAGTCATAATTATTTGAACTTG-ATCGATAAACAGATTTATTTTTTAAATC
* * * *
82374 TATTACCTATT-ATTTTTTAAATATTAATCAATTAGTATTATTTTATT-TCAAATAAGCTTGTAT
65 T-TTTCTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCT-AAATAAGCTTGTAT
* * * *
82437 GATAA-AAAAAAATTGTATTATGACAAAAAAAAAGGTCATAATGATTTGAAATA
128 --TAATGAAAAAATTGTTTTATGACAAAAAAAAAGGTCATAATCATTTAAAATA
* * * * * * *
82490 GATAATTATTCAAATGGCCATAATTATTTTAAC-TGATTTGGTAAATAGATTTATTTTTTAAA--
1 GATAATTGTTCAAATAGTCATAATTATTTGAACTTGA-TCGATAAACAGATTTATTTTTTAAATC
*** * **
82552 -TTTCTTATTAATTTAGGAAATATTAATAAATTAGTATTATTTTATTCCATCTAAGCTTGTATTA
65 TTTTCTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATTA
* ** *
82616 ACTGAAACAATTGTTTTAT-ATCAAATTAAAAGGTTATAA-CATTTTAAAATA
130 A-TGAAAAAATTGTTTTATGA-CAAAAAAAAAGGTCATAATCA-TTTAAAATA
* * * * *
82667 GATAATTGTTCAAATAATAATAACTATTTGAACTTGATCGACAAACAAATTTATTTTTTAAATCT
1 GATAATTGTTCAAATAGTCATAATTATTTGAACTTGATCGATAAACAGATTTATTTTTTAAATCT
* * * **
82732 CTTTCTTATTAATTTTTCAAATGTTAATAAATTAGTATTAATTTATTCTGAATAAGCTTGTAAGA
66 -TTTCTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATTA
* * * * * * *
82797 ATTGAAATAATTGTTTTATGAC-TAAAAAATGGTCAAAATGATTTGAAGTA
130 A-TGAAAAAATTGTTTTATGACAAAAAAAAAGGTCATAATCATTTAAAATA
* * *
82847 TATAATTATTCTAATAGTC
1 GATAATTGTTCAAATAGTC
82866 TTAACCATTT
Statistics
Matches: 294, Mismatches: 67, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
175 3 0.01
176 9 0.03
177 126 0.43
178 3 0.01
179 2 0.01
180 78 0.27
181 72 0.24
182 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (179 bp):
GATAATTGTTCAAATAGTCATAATTATTTGAACTTGATCGATAAACAGATTTATTTTTTAAATCT
TTTCTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATTAA
TGAAAAAATTGTTTTATGACAAAAAAAAAGGTCATAATCATTTAAAATA
Found at i:83138 original size:14 final size:13
Alignment explanation
Indices: 83103--83145 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
83093 TATATTTATT
83103 ATTAATAA-ATATA
1 ATTAATAATATA-A
*
83116 ATTAATAATTTAA
1 ATTAATAATATAA
83129 ATTAAATAATATAA
1 ATT-AATAATATAA
83143 ATT
1 ATT
83146 TGGTATTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATTAATAATATAA
Found at i:83478 original size:23 final size:22
Alignment explanation
Indices: 83435--83483 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
83425 TTTAAAATTG
*
83435 TTAATATTAATAATAGAAATATA
1 TTAATATTAATAATACAAATA-A
*
83458 TTAATATGTAA-AATACTAATAA
1 TTAATAT-TAATAATACAAATAA
83480 TTAA
1 TTAA
83484 GATTGTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 5 0.22
23 15 0.65
24 3 0.13
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (22 bp):
TTAATATTAATAATACAAATAA
Found at i:83761 original size:26 final size:24
Alignment explanation
Indices: 83732--83799 Score: 64
Period size: 26 Copynumber: 2.7 Consensus size: 24
83722 ACTAAATAAA
83732 TATTTTATTAATTATTCAAACAGAAT
1 TATTTTATTAATTATTCAAA-A-AAT
* * *
83758 TATTTTATCAATAATCCAAAAAAT
1 TATTTTATTAATTATTCAAAAAAT
*
83782 TAATCATTATTAATTATT
1 T-AT-TTTATTAATTATT
83800 AATAATGTAC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 26 0.79
ACGTcount: A:0.44, C:0.09, G:0.01, T:0.46
Consensus pattern (24 bp):
TATTTTATTAATTATTCAAAAAAT
Found at i:83985 original size:38 final size:37
Alignment explanation
Indices: 83921--83992 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
83911 TAAATATTTA
* *
83921 TAATTAATATTTAAATTATAAATATTAATAATTACTT
1 TAATGAATATTTAAATAATAAATATTAATAATTACTT
* * *
83958 TAATGAATATTTTAATAATCAATTATTAATTATTA
1 TAATGAATATTTAAATAAT-AAATATTAATAATTA
83993 TTTTTATAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 16 0.55
38 13 0.45
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (37 bp):
TAATGAATATTTAAATAATAAATATTAATAATTACTT
Found at i:84614 original size:24 final size:24
Alignment explanation
Indices: 84587--84635 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
84577 TCATATGACC
* *
84587 TTTTGTTAAT-TTAATTATTACATA
1 TTTTATTAATATTAATAATTA-ATA
84611 TTTTATTAATATTAATAATTAATA
1 TTTTATTAATATTAATAATTAATA
84635 T
1 T
84636 CATTTACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTTATTAATATTAATAATTAATA
Found at i:84708 original size:26 final size:28
Alignment explanation
Indices: 84679--84735 Score: 66
Period size: 26 Copynumber: 2.1 Consensus size: 28
84669 TATATAATTA
* *
84679 ATTAATTTAAATAA-ATTTAA-TCCAAT
1 ATTAATCTAAATAATATTTAACTCAAAT
*
84705 ATT-ATCTATATAATATTTAACTCAAAT
1 ATTAATCTAAATAATATTTAACTCAAAT
84732 ATTA
1 ATTA
84736 TTAAATTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
25 8 0.32
26 9 0.36
27 8 0.32
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (28 bp):
ATTAATCTAAATAATATTTAACTCAAAT
Found at i:84748 original size:27 final size:26
Alignment explanation
Indices: 84686--84741 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
84676 TTAATTAATT
*
84686 TAAATAA-ATTTAATCCAATATTATC
1 TAAATAATATTTAATCAAATATTATC
*
84711 TATATAATATTTAACTCAAATATTAT-
1 TAAATAATATTTAA-TCAAATATTATC
84737 TAAAT
1 TAAAT
84742 TAGTATTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 6 0.23
26 10 0.38
27 10 0.38
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (26 bp):
TAAATAATATTTAATCAAATATTATC
Found at i:85703 original size:181 final size:177
Alignment explanation
Indices: 84728--85702 Score: 742
Period size: 181 Copynumber: 5.5 Consensus size: 177
84718 TATTTAACTC
* * * *
84728 AAATATTATTAAATTAGTATTATTTT-TATTTGAATCAACTTATATGGTAA-A-AAACAATTGTT
1 AAATATTAATAAATTAGTATTATTTTAT-TTTGAATAAACTTGTAT-G-AATAGAAACAATTATT
* * * *
84790 TTATGACAAAAC-AAAGATTATAATGATTTGAGATTA-ATATTTGTTCAAATAGTCATAACTATT
63 TTATGACAAAACAAAAGATCATAATGATTTGA-AATAGATAATTGTTCTAATAGTCAT-ACTATT
* * * * * * *
84853 AGAA-TTGCTTTGAAAAATAGCTTTAGGTTTTAAATCTCTTGCTTAATAATTTTTG
126 TGAACTTG-TTCGATAAATAGATTTAGTTTTTAAATCTC-T-C-TATTAATTTTTA
* * *** * * *
84908 AAATATTAATAAACTAGTATTATTTTA-TTTCAGATATGTTTTTATCAACT-GCAACAATTATTT
1 AAATATTAATAAATTAGTATTATTTTATTTTGA-ATAAACTTGTATGAA-TAGAAACAATTATTT
* * * *
84971 TATGATAAAACAAAATG-TCAAAATAATTTTAAATAGATAATTGTT-TAAATAGTCATATCTATT
64 TATGACAAAACAAAA-GATCATAATGATTTGAAATAGATAATTGTTCT-AATAGTCATA-CTATT
* * * * * *
85034 TGAAATTATTC-AGTAAACATATTTATTTTTTTTAAATCTCTTGCT-TTAATTTTTT
126 TGAACTTGTTCGA-TAAATAGATTTA--GTTTTTAAATCTC-T-CTATTAATTTTTA
* * *** * * * *
85089 GAATGTTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAATTGACATAATTATTTTA
1 AAATATTAATAAATTAGTATTATTTTATTTTGAATAAACTTGTATGAATAGAAACAATTATTTTA
* * * * * * * *
85154 TGACTAAATAAAATGAT-AGAATGATTTGAAATAGATAATTATTCTGATAGTCTTAAGTATTTAA
66 TGACAAAACAAAA-GATCATAATGATTTGAAATAGATAATTGTTCTAATAGTCAT-ACTATTTGA
* * *
85218 ACTAGTTCGGCTAACAT--ATTTA-TTTTTAAATCTCT-TATTAATTTTTG
129 ACTTGTTC-GATAA-ATAGATTTAGTTTTTAAATCTCTCTATTAATTTTTA
* * * ** * * *
85265 AAATATTATTAAATTAGTATCATTTTAATCCGAATAAGCTTGTATGAA-AGGAACAATTATTGTA
1 AAATATTAATAAATTAGTATTATTTTATTTTGAATAAACTTGTATGAATAGAAACAATTATTTTA
* * * *
85329 TGA-AAAA-TAAAGATCATTATGATTTGAGATAGATAATTGTTCAAATAGTCATATCTATTTGAA
66 TGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTGTTCTAATAGTCATA-CTATTTGAA
* * *
85392 CTGGTT-TAGTAAATAGATTTAGTTTTTAAATCACT-TATTAATTTTTA
130 CTTGTTCGA-TAAATAGATTTAGTTTTTAAATCTCTCTATTAATTTTTA
* * * * *
85439 AAATATTAATAAATCA--A-TATTTTATTTTGAAT-AATTCTATATGAACAGAAACAATTGTTTT
1 AAATATTAATAAATTAGTATTATTTTATTTTGAATAAACT-TGTATGAATAGAAACAATTATTTT
* ** * *
85500 ATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCTAATGGACATGACTATTTGA
65 ATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTGTTCTAATAGTCAT-ACTATTTGA
* **
85565 ACTTGTTCGATAAATAGATTTATTTTTTAAATCTACTACTATTAATTTGCA
129 ACTTGTTCGATAAATAGATTTAGTTTTTAAATCT-CT-CTATTAATTTTTA
* * *
85616 AAATATTAATAAAAGTAGTATTATTTTATTTTTAATAAACTTGTATGAATAGAAACAATTGTTTT
1 AAATATTAAT-AAATTAGTATTATTTTATTTTGAATAAACTTGTATGAATAGAAACAATTATTTT
85681 ATGACAAAACAAAAGATCATAA
65 ATGACAAAACAAAAGATCATAA
85703 CTATTAGAAA
Statistics
Matches: 631, Mismatches: 121, Indels: 85
0.75 0.14 0.10
Matches are distributed among these distances:
170 2 0.00
171 20 0.03
172 24 0.04
173 54 0.09
174 112 0.18
175 19 0.03
176 51 0.08
177 21 0.03
178 18 0.03
179 4 0.01
180 58 0.09
181 217 0.34
182 15 0.02
183 16 0.03
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (177 bp):
AAATATTAATAAATTAGTATTATTTTATTTTGAATAAACTTGTATGAATAGAAACAATTATTTTA
TGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTGTTCTAATAGTCATACTATTTGAAC
TTGTTCGATAAATAGATTTAGTTTTTAAATCTCTCTATTAATTTTTA
Found at i:86232 original size:6 final size:6
Alignment explanation
Indices: 86215--86285 Score: 53
Period size: 6 Copynumber: 12.3 Consensus size: 6
86205 TAATACCTAA
* *
86215 TAATAA TAATAT TAATAT TATTA- TAACTA- -AATAT TAATAT T-AT-T
1 TAATAT TAATAT TAATAT TAATAT TAA-TAT TAATAT TAATAT TAATAT
* *
86259 TATTAT TAATAT CAATAT TAATTAT TA
1 TAATAT TAATAT TAATAT TAA-TAT TA
86286 TCAATTAATT
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
4 4 0.08
5 7 0.13
6 36 0.69
7 5 0.10
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (6 bp):
TAATAT
Found at i:86269 original size:22 final size:21
Alignment explanation
Indices: 86221--86286 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 21
86211 CTAATAATAA
*
86221 TAATATTAATATTATTATAACT
1 TAATATTAATATTATTATTA-T
*
86243 AAATATTAATATTATTTATTAT
1 TAATATTAATATTA-TTATTAT
*
86265 TAATATCAATATTAATTATTAT
1 TAATATTAATATT-ATTATTAT
86287 CAATTAATTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 32 0.84
23 6 0.16
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (21 bp):
TAATATTAATATTATTATTAT
Found at i:89182 original size:14 final size:15
Alignment explanation
Indices: 89154--89185 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
89144 CTATTATACT
89154 TTAATTTATAAATAA
1 TTAATTTATAAATAA
89169 TTAATTTA-AAATAA
1 TTAATTTATAAATAA
89183 TTA
1 TTA
89186 TAATTATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAATTTATAAATAA
Found at i:89295 original size:26 final size:26
Alignment explanation
Indices: 89261--89310 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
89251 ATACATATCA
89261 AATTATTAATTGTTTAA-TAATATATG
1 AATTATTAATT-TTTAATTAATATATG
*
89287 AATTTTTAATTTTTAATTAATATA
1 AATTATTAATTTTTAATTAATATA
89311 AGAAATTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (26 bp):
AATTATTAATTTTTAATTAATATATG
Found at i:90094 original size:21 final size:21
Alignment explanation
Indices: 90070--90117 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
90060 ATTAATGATT
*
90070 ATAATCTATTCATA-TTTAACA
1 ATAATATATT-ATATTTTAACA
*
90091 ATAAATATATTATATTTTAATA
1 AT-AATATATTATATTTTAACA
90113 ATAAT
1 ATAAT
90118 TATAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (21 bp):
ATAATATATTATATTTTAACA
Found at i:90101 original size:22 final size:22
Alignment explanation
Indices: 90076--90121 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
90066 GATTATAATC
90076 TATTCATA-TTTAACAATAAATA
1 TATT-ATATTTTAACAATAAATA
* *
90098 TATTATATTTTAATAATAATTA
1 TATTATATTTTAACAATAAATA
90120 TA
1 TA
90122 ATAAATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TATTATATTTTAACAATAAATA
Found at i:90129 original size:22 final size:22
Alignment explanation
Indices: 90084--90206 Score: 62
Period size: 22 Copynumber: 5.6 Consensus size: 22
90074 TCTATTCATA
* * * *
90084 TTTAACAATAAATATATTATAT
1 TTTAATAATAATTATAATAAAT
90106 TTTAATAATAATTATAATAAA-
1 TTTAATAATAATTATAATAAAT
90127 TTT-AT--T-ATTAT-ATAAAT
1 TTTAATAATAATTATAATAAAT
** *
90144 TAAAACTATTATAATTATAGTAAAT
1 TTTAA-TA--ATAATTATAATAAAT
90169 TATTAATCAAATAATTAATAATAAA-
1 T-TTAAT--AATAATT-ATAATAAAT
*
90194 TTTATTAATAATT
1 TTTAATAATAATT
90207 GTTATATATT
Statistics
Matches: 77, Mismatches: 11, Indels: 26
0.68 0.10 0.23
Matches are distributed among these distances:
16 5 0.06
17 6 0.08
18 2 0.03
19 1 0.01
20 2 0.03
21 3 0.04
22 24 0.31
23 1 0.01
24 9 0.12
25 14 0.18
26 9 0.12
27 1 0.01
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (22 bp):
TTTAATAATAATTATAATAAAT
Found at i:90239 original size:28 final size:30
Alignment explanation
Indices: 90190--90245 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
90180 TAATTAATAA
* *
90190 TAAATTTATTAATAATTGTTA-TATATTTT
1 TAAATTTATTAATAAATATTATTATATTTT
90219 TAAATTTA-TAATAAATATTATTATATT
1 TAAATTTATTAATAAATATTATTATATT
90246 AGCAATAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (30 bp):
TAAATTTATTAATAAATATTATTATATTTT
Found at i:91313 original size:4 final size:4
Alignment explanation
Indices: 91304--91397 Score: 52
Period size: 4 Copynumber: 23.2 Consensus size: 4
91294 TAAATTAAAT
* * * * * *
91304 ATTA ATTA ATTA ATTA AATA TTCTA TTTA TTTA TTTTA A-TA TTTA A-T-
1 ATTA ATTA ATTA ATTA ATTA AT-TA ATTA ATTA -ATTA ATTA ATTA ATTA
*
91351 ATTA ATTA ATTAA ATTG ATTA TATTA ATTA ATATA ATT- ATTA ATTA A
1 ATTA ATTA ATT-A ATTA ATTA -ATTA ATTA AT-TA ATTA ATTA ATTA A
91398 GTTTAATATA
Statistics
Matches: 73, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
2 1 0.01
3 7 0.10
4 45 0.62
5 20 0.27
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (4 bp):
ATTA
Found at i:91374 original size:22 final size:21
Alignment explanation
Indices: 91349--91409 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 21
91339 TTAATATTTA
91349 ATATTAATTAAT-TAAATTGATT
1 ATATTAATTAATAT-AATT-ATT
91371 ATATTAATTAATATAATTATT
1 ATATTAATTAATATAATTATT
91392 A-ATTAAGTTTAATATAAT
1 ATATTAA--TTAATATAAT
91410 AAAGGATAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.14
21 4 0.11
22 26 0.72
23 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (21 bp):
ATATTAATTAATATAATTATT
Found at i:91468 original size:30 final size:30
Alignment explanation
Indices: 91434--91500 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
91424 TTTAATAGAA
* *
91434 AATTAATATATTTCTATTTTTTAGAATAA-T
1 AATTAATATATTTCTAATTATTA-AATAATT
* *
91464 AATTAATTTGTTTCTAATTATTAAATAATT
1 AATTAATATATTTCTAATTATTAAATAATT
91494 AA-TAATA
1 AATTAATA
91501 ATTGAATAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (30 bp):
AATTAATATATTTCTAATTATTAAATAATT
Found at i:91492 original size:11 final size:11
Alignment explanation
Indices: 91478--91549 Score: 55
Period size: 10 Copynumber: 6.7 Consensus size: 11
91468 AATTTGTTTC
*
91478 TAATTATTAAA
1 TAATTAATAAA
91489 TAATTAAT-AA
1 TAATTAATAAA
91499 TAATTGAATAAA
1 TAATT-AATAAA
91511 CTAA-T-ATAAA
1 -TAATTAATAAA
91521 TAATT-ATAAAA
1 TAATTAAT-AAA
* *
91532 TTATTTAT-AA
1 TAATTAATAAA
91542 TAATTAAT
1 TAATTAAT
91550 CTATTATTAA
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
9 3 0.06
10 23 0.45
11 17 0.33
12 5 0.10
13 3 0.06
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (11 bp):
TAATTAATAAA
Found at i:91499 original size:18 final size:18
Alignment explanation
Indices: 91478--91559 Score: 55
Period size: 18 Copynumber: 4.6 Consensus size: 18
91468 AATTTGTTTC
91478 TAATTATTAAATAATTAA
1 TAATTATTAAATAATTAA
* * *
91496 TAATAATTGAATAA--AC
1 TAATTATTAAATAATTAA
91512 TAA-TA-TAAATAATTATA
1 TAATTATTAAATAATTA-A
*
91529 AAATTATTTATAATAATTAA
1 TAATTA-TTA-AATAATTAA
*
91549 TCTATTATTAA
1 T-AATTATTAA
91560 TATTATATTA
Statistics
Matches: 47, Mismatches: 9, Indels: 15
0.66 0.13 0.21
Matches are distributed among these distances:
14 6 0.13
15 1 0.02
16 5 0.11
17 2 0.04
18 14 0.30
19 1 0.02
20 6 0.13
21 12 0.26
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (18 bp):
TAATTATTAAATAATTAA
Found at i:91560 original size:18 final size:19
Alignment explanation
Indices: 91539--91580 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
91529 AAATTATTTA
91539 TAATAATTA-ATCTAT-TAT
1 TAATAATTATAT-TATATAT
91557 TAAT-ATTATATTATATAT
1 TAATAATTATATTATATAT
91575 TAATAA
1 TAATAA
91581 AGTAAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 7 0.33
18 13 0.62
19 1 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATAATTATATTATATAT
Found at i:91664 original size:17 final size:17
Alignment explanation
Indices: 91642--91698 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
91632 ATTTATATTT
91642 TAATTAATTATGAATAA
1 TAATTAATTATGAATAA
* **
91659 TAATTAAAATATTCATAA
1 TAATT-AATTATGAATAA
*
91677 TTATCT-ATTATGAATAA
1 TAAT-TAATTATGAATAA
91694 TAATT
1 TAATT
91699 TAAAATTAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 5
0.70 0.19 0.12
Matches are distributed among these distances:
16 1 0.03
17 16 0.53
18 12 0.40
19 1 0.03
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (17 bp):
TAATTAATTATGAATAA
Found at i:91721 original size:35 final size:35
Alignment explanation
Indices: 91648--91719 Score: 99
Period size: 35 Copynumber: 1.9 Consensus size: 35
91638 ATTTTAATTA
*
91648 ATTATGAATAATAATTAAAATATTCATAATTATCT
1 ATTATGAATAATAATTAAAATAATCATAATTATCT
91683 ATTATGAATAATAATTTAAAATTAATCTATATATTAT
1 ATTATGAATAATAA-TTAAAA-TAATC-ATA-ATTAT
91720 TAGAATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
35 14 0.44
36 6 0.19
37 4 0.12
38 3 0.09
39 5 0.16
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (35 bp):
ATTATGAATAATAATTAAAATAATCATAATTATCT
Found at i:91732 original size:15 final size:15
Alignment explanation
Indices: 91714--91743 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91704 TTAATCTATA
91714 TATTATTAGAATATT
1 TATTATTAGAATATT
*
91729 TATTATTATAATATT
1 TATTATTAGAATATT
91744 AAGGATTTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
TATTATTAGAATATT
Found at i:91778 original size:13 final size:14
Alignment explanation
Indices: 91760--91788 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91750 TTTCTTATTC
91760 TTATTAA-ATTAAT
1 TTATTAATATTAAT
91773 TTATTAATATTAAT
1 TTATTAATATTAAT
91787 TT
1 TT
91789 TAATTATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTAATATTAAT
Found at i:91817 original size:14 final size:14
Alignment explanation
Indices: 91798--91824 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91788 TTAATTATTG
91798 AATAAATATAATAC
1 AATAAATATAATAC
91812 AATAAATATAATA
1 AATAAATATAATA
91825 TATAAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAATATAATAC
Found at i:92708 original size:11 final size:11
Alignment explanation
Indices: 92665--92708 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
92655 ACAAAATTAC
92665 TAATATTATAA
1 TAATATTATAA
*
92676 AAATATTATAA
1 TAATATTATAA
92687 TTATTATATTATAA
1 -TA--ATATTATAA
92701 TAATATTA
1 TAATATTA
92709 ATTATTAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 16 0.57
12 1 0.04
13 2 0.07
14 9 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAATATTATAA
Found at i:92720 original size:16 final size:16
Alignment explanation
Indices: 92679--92727 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
92669 ATTATAAAAA
92679 TATTATAATTATTATAT
1 TATTATAA-TATTATAT
*
92696 TATAATAATATTA-AT
1 TATTATAATATTATAT
92711 TATTAGTAATATTATAT
1 TATTA-TAATATTATAT
92728 AAATTACTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.21
16 13 0.46
17 9 0.32
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
TATTATAATATTATAT
Found at i:92837 original size:19 final size:18
Alignment explanation
Indices: 92815--92857 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
92805 ATATATTTTA
92815 TAAT-TAAATTCTAAATAAT
1 TAATATAAATT-T-AATAAT
92834 TAATAATAAATTTAATAAT
1 TAAT-ATAAATTTAATAAT
92853 TAATA
1 TAATA
92858 GTATAATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.05
19 14 0.64
20 1 0.05
21 6 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATATAAATTTAATAAT
Found at i:92852 original size:34 final size:34
Alignment explanation
Indices: 92791--92855 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
92781 ATTAAACATA
* * *
92791 CTAAATTATTATGAATATATTTTATAATTAAATT
1 CTAAATAATTATGAATAAATTTAATAATTAAATT
92825 CTAAATAATTAAT-AATAAATTTAATAATTAA
1 CTAAATAATT-ATGAATAAATTTAATAATTAA
92856 TAGTATAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 25 0.93
35 2 0.07
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.45
Consensus pattern (34 bp):
CTAAATAATTATGAATAAATTTAATAATTAAATT
Found at i:93864 original size:21 final size:21
Alignment explanation
Indices: 93822--93886 Score: 54
Period size: 17 Copynumber: 3.3 Consensus size: 21
93812 AATAGATATA
93822 ATAATAGTTAATAATT-TA-AAT
1 ATAATAGTT-A-AATTATATAAT
93843 ATAATAGTTAAATTATAT-A-
1 ATAATAGTTAAATTATATAAT
93862 AT-A-AGTTAAATTATAATAAT
1 ATAATAGTTAAATTAT-ATAAT
93882 -TAATA
1 ATAATA
93887 AGTAAATGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
17 11 0.30
18 3 0.08
19 8 0.22
20 5 0.14
21 10 0.27
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.42
Consensus pattern (21 bp):
ATAATAGTTAAATTATATAAT
Found at i:93870 original size:17 final size:16
Alignment explanation
Indices: 93841--93881 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 16
93831 AATAATTTAA
93841 ATATAATAGTTAAATT
1 ATATAATAGTTAAATT
93857 ATATAATAAGTTAAATT
1 ATATAAT-AGTTAAATT
93874 ATAATAAT
1 AT-ATAAT
93882 TAATAAGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.30
17 11 0.48
18 5 0.22
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (16 bp):
ATATAATAGTTAAATT
Found at i:93958 original size:21 final size:22
Alignment explanation
Indices: 93928--93993 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 22
93918 TTATTTAATT
*
93928 ATATAATATTATTATATATTAA
1 ATATTATATTATTATATATTAA
** *
93950 ATATT-TATTAAAATATAATAA
1 ATATTATATTATTATATATTAA
*
93971 ATATTATATAATTATATTATTAA
1 ATATTATATTATTATA-TATTAA
93994 TTTAATTATA
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
21 18 0.53
22 11 0.32
23 5 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATATTATATTATTATATATTAA
Found at i:94001 original size:17 final size:18
Alignment explanation
Indices: 93922--94024 Score: 63
Period size: 17 Copynumber: 5.7 Consensus size: 18
93912 TTTAATTTAT
*
93922 TTAATTATA-TAATATTA
1 TTAATTATATTAATAATA
*
93939 TT-A-TATATTAAATATTTA
1 TTAATTATATT-AATA-ATA
* * *
93957 TTAAAATATAATAAATATTA
1 TT-AATTAT-ATTAATAATA
*
93977 TATAATTATATTATTAAT-
1 T-TAATTATATTAATAATA
93995 TTAATTATA-TAATAATA
1 TTAATTATATTAATAATA
*
94012 TTAATTTTATTAA
1 TTAATTATATTAA
94025 AAAATTGAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
15 4 0.06
16 8 0.12
17 22 0.32
18 9 0.13
19 6 0.09
20 10 0.14
21 8 0.12
22 2 0.03
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAATTATATTAATAATA
Found at i:94711 original size:20 final size:20
Alignment explanation
Indices: 94688--94762 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 20
94678 TTTAAATAAT
94688 TATTATTTATAATTATATTA
1 TATTATTTATAATTATATTA
*
94708 TATTATTAATAATTTATTATTA
1 TATTATTTATAA-TTA-TATTA
* *
94730 TTAATAGTCTTATATTTATATTA
1 -TATTA-T-TTATAATTATATTA
*
94753 TATTAATTAT
1 TATTATTTAT
94763 TAATAAGCTC
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
20 15 0.34
21 3 0.07
22 9 0.20
23 9 0.20
24 4 0.09
25 4 0.09
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (20 bp):
TATTATTTATAATTATATTA
Found at i:94717 original size:17 final size:17
Alignment explanation
Indices: 94688--94766 Score: 64
Period size: 17 Copynumber: 4.9 Consensus size: 17
94678 TTTAAATAAT
94688 TATTAT-TTA-TAATTA
1 TATTATATTATTAATTA
*
94703 TATTATATTATTAATAA
1 TATTATATTATTAATTA
94720 T-TTATTATTATTAA-TA
1 TATTA-TATTATTAATTA
*
94736 GTCTTATA-T-TTATATTA
1 -TATTATATTATTA-ATTA
94753 TATTA-ATTATTAAT
1 TATTATATTATTAAT
94767 AAGCTCATAT
Statistics
Matches: 52, Mismatches: 3, Indels: 17
0.72 0.04 0.24
Matches are distributed among these distances:
15 10 0.19
16 16 0.31
17 23 0.44
18 3 0.06
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (17 bp):
TATTATATTATTAATTA
Found at i:96886 original size:181 final size:178
Alignment explanation
Indices: 96553--97808 Score: 952
Period size: 181 Copynumber: 7.0 Consensus size: 178
96543 AATAAGATAT
* * * * * *
96553 TATTTTAAATCGTTATCACCTTTTGTTTGGTCATATAACAATTGTTGT-T-TCTCATACATGATT
1 TATTTCAAATCATTATGACCTTTTGTTT-GTCATAAAACAATTGTT-TCTGT-TCATACAAGCTT
* * *
96616 ATTTGAAATAAAATAATAATAATTTATTAATCTTTCAAAAATT--T-ATAAGAGATTTAAAAAAT
63 ATTCGAAATAAAATAATACTAATTTATTAATATTT-AAAAATTAATAATAAGAGATTTAAAAAAT
* * * * * * * * * *
96678 GAATCTATTTACCAAACCAGTTCAAATAGTTATGACTATCTGAATAGTTCTA
127 AAATTTGTTTACCAAACCAATTCAAATAATTATGACTATTTGAACAATTATC
* * * * *
96730 TAGTTCAAATCATTATAACCTTTTGTTATATCATAAAATAATTATTTCTGTTCATACAAGCTTAT
1 TATTTCAAATCATTATGACCTTTTGTT-TGTCATAAAACAATTGTTTCTGTTCATACAAGCTTAT
* * * * * *
96795 TCAAAATAAAACAATACTAATCTAATAATATCCTAAAAATTAATAACTAAGGGATTTAAAAAATA
65 TCGAAATAAAATAATACTAATTTATTAATAT-TTAAAAATTAATAA-TAAGAGATTTAAAAAATA
* * *
96860 AATTTGTTTACCAAACCAATTCAAATAGTTAAGACTATATGAACAATTATC
128 AATTTGTTTACCAAACCAATTCAAATAATTATGACTATTTGAACAATTATC
* * ** ** *
96911 TATTTCAAATCGTTATGACCTTTTATCTTGTCATAAAACAATT-TTCTCAATTCATAGTAGGTTA
1 TATTTCAAATCATTATGACCTTTTGT-TTGTCATAAAACAATTGTT-TCTGTTCATACAAGCTTA
* *
96975 TTCGAAATAAAATAA-AATGAATTTATTAATATTTTAAAAAATAATAAGTAAGAGATTTAAAAAA
64 TTCGAAATAAAATAATACT-AATTTATTAATA-TTTAAAAATTAATAA-TAAGAGATTTAAAAAA
* * * * *
97039 T-AATTCTGTTTACCTAACCATTTTAAAAAATTAT-ACTATTTGAACAATTATA
126 TAAATT-TGTTTACCAAACCAATTCAAATAATTATGACTATTTGAACAATTATC
* * * * * * * * *
97091 TATTTCAAATCATTCTTACTTTTTGTTTTGTCATACAGCAAATGTTTTTGTTCATATAAGTTTAT
1 TATTTCAAATCATTATGACCTTTTG-TTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTAT
* * * * * *
97156 TCGAAATAAAGTACTACTAATCTATTAATATTTCAAAAA-T--TAATAAGTGATTTAGACAATAA
65 TCGAAATAAAATAATACTAATTTATTAATATTT-AAAAATTAATAATAAGAGATTTAAAAAATAA
* * * * * * * *
97218 ATCTATGTATCAAACTAATTCAAATAGTTATGACTATTTGAGCAATTATT
129 ATTTGTTTACCAAACCAATTCAAATAATTATGACTATTTGAACAATTATC
* ** * *
97268 TATTTCAAATCATTATGACTTTTTGTTTTGTTGTAAAATAATTGTTTCTATTCATACAAGCTTAT
1 TATTTCAAATCATTATGACCTTTTG-TTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTAT
* * * * * *
97333 TTGCATTAAAATAATACTAATTTATTAATATTTTGACAA-TAAGTAA-AA-A-ATTTTAAAAAT-
65 TCGAAATAAAATAATACTAATTTATTAATA-TTTAAAAATTAA-TAATAAGAGATTTAAAAAATA
* * * * *
97393 -A--TGTTTACCACACTAGA-TCAAATAATCATGACAATTTGAATAATTATC
128 AATTTGTTTACCAAACCA-ATTCAAATAATTATGACTATTTGAACAATTATC
** * * *
97441 TATTTCAAATTGTTATGACCTTTTGATTTGTCATAAAAGAATTGTTT-TAGTTCATATAAACTTA
1 TATTTCAAATCATTATGACCTTTTG-TTTGTCATAAAACAATTGTTTCT-GTTCATACAAGCTTA
* * **
97505 TTCAAAATAAAATAATATTAATTTATTAATAATCCAAAAATTAATAATAAAGAGATTTAAAAAAT
64 TTCGAAATAAAATAATACTAATTTATTAAT-ATTTAAAAATTAATAAT-AAGAGATTTAAAAAAT
* * * * * * * *
97570 GACTTTGTTTACTAAACAAATTTAAATAATTAGGACTGTTTGAATAATTATC
127 AAATTTGTTTACCAAACCAATTCAAATAATTATGACTATTTGAACAATTATC
* * * * * * *
97622 TATTTGAAAT-AGCTATAACCTTTTGTCTTGTAAGAAAAGAAAT-TTTCTGTTCAT-CTAAGCTT
1 TATTTCAAATCA-TTATGACCTTTTGT-TTGTCATAAAACAATTGTTTCTGTTCATAC-AAGCTT
** * *
97684 ATTTCG-AATAAAATAATAGAAATTTATTAATA-TTAAGACAATTAATAAGAAAAAGATTT-AAA
63 A-TTCGAAATAAAATAATACTAATTTATTAATATTTAA-A-AATTAATAA-TAAGAGATTTAAAA
* * * *
97746 AATAAATTTGTTTACCAAA-CAAGTTCTAATCATTATTACTATTT-AAGCAATTATT
124 AATAAATTTGTTTACCAAACCAA-TTCAAATAATTATGACTATTTGAA-CAATTATC
97801 TATTTCAA
1 TATTTCAA
97809 CATGTTATGA
Statistics
Matches: 851, Mismatches: 182, Indels: 90
0.76 0.16 0.08
Matches are distributed among these distances:
172 1 0.00
173 119 0.14
174 5 0.01
175 3 0.00
176 35 0.04
177 201 0.24
178 12 0.01
179 56 0.07
180 159 0.19
181 258 0.30
182 2 0.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (178 bp):
TATTTCAAATCATTATGACCTTTTGTTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTATT
CGAAATAAAATAATACTAATTTATTAATATTTAAAAATTAATAATAAGAGATTTAAAAAATAAAT
TTGTTTACCAAACCAATTCAAATAATTATGACTATTTGAACAATTATC
Found at i:97675 original size:530 final size:534
Alignment explanation
Indices: 96614--97733 Score: 1173
Period size: 530 Copynumber: 2.1 Consensus size: 534
96604 TCATACATGA
* * * * *
96614 TTATTTGAAATAAAATAATAATAATTTATTAATCTTTCAAAAATTTATAAGAGATTTAAAAAATG
1 TTATTCGAAATAAAATAATAATAATCTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATA
* * * * *
96679 AATCTATTTACCAAACCAGTTCAAATAGTTATGACTATCTGAATAGTTCTATAGTTCAAATCATT
66 AATCTATGTACCAAACCAATTCAAATAGTTATGACTATCTGAACAATTATATAGTTCAAATCATT
*
96744 ATAACCTTTTGTTATATCATAAAATAATTATTTCTGTTCATACAAGCTTATTCAAAATAAAACAA
131 ATAACCTTTTGTTATATCATAAAATAATTATTTCTATTCATACAAGCTTATTCAAAATAAAACAA
*
96809 TACTAATCTAATAATATCCTAAAAATTAATAACTAAGGGATTTAAAAAATAAATTTGTTTACCAA
196 TACTAATCTAATAATATCCTAAAAATTAATAAC-AA-GAATTTAAAAAAT-AA-TTGTTTACCAA
* * *
96874 ACCAATTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCGTTATGACCTTTTATCT
257 ACCAATTCAAATAATCAAGACAATATGAACAATTATCTATTTCAAATCGTTATGACCTTTTATCT
** *
96939 TGTCATAAAACAATTTTCTCAATTCATAGTAGGTTATTCGAAATAAAATAAAATGAATTTATTAA
322 TGTCATAAAACAATTTTCTCAATTCATAGTAACTTATTCAAAATAAAATAAAATGAATTTATTAA
* ** * *
97004 TATTTTAAAAAATAATAAGTAAGAGATTTAAAAAATAATTCTGTTTACCTAACCATTTTAAAAAA
387 TAATCCAAAAAATAATAAGTAAGAGATTTAAAAAATAATTCTGTTTACCTAACAAATTTAAAAAA
* * * * * * *
97069 TTATACTATTTGAACAATTATATATTTCAAATCATTCTTACTTTTTGTTTTGTCATACAGCAAAT
452 TTAGACTATTTGAACAATTATATATTTCAAATCATGCTTACCTTTTGTCTTGTAAAAAAGCAAAT
* *
97134 GTTTTTGTTCATATAAGT
517 GTTTCTGTTCATATAAGC
* * * * * *
97152 TTATTCGAAATAAAGTACTACTAATCTATTAATATTTCAAAAATTAATAAGTGATTTAGACAATA
1 TTATTCGAAATAAAATAATAATAATCTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATA
* * * * * *
97217 AATCTATGTATCAAACTAATTCAAATAGTTATGACTATTTGAGCAATTATTTATTTCAAATCATT
66 AATCTATGTACCAAACCAATTCAAATAGTTATGACTATCTGAACAATTATATAGTTCAAATCATT
* * * * ** * *** * *
97282 ATGACTTTTTGTTTTGTTGTAAAATAATTGTTTCTATTCATACAAGCTTATTTGCATTAAAATAA
131 ATAACCTTTTGTTATATCATAAAATAATTATTTCTATTCATACAAGCTTATTCAAAATAAAACAA
* * ** * * * * *
97347 TACTAATTTATTAATATTTTGACAA-TAAGTAA-AA-AATTTTAAAAAT-A-TGTTTACCACACT
196 TACTAATCTAATAATATCCTAAAAATTAA-TAACAAGAATTTAAAAAATAATTGTTTACCAAACC
* * * *
97407 AGA-TCAAATAATCATGACAATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGAT-TT
260 A-ATTCAAATAATCAAGACAATATGAACAATTATCTATTTCAAATCGTTATGACCTTTT-ATCTT
* * * * *
97470 GTCATAAAAGAATTGTT-TTAGTTCATA-TAAACTTATTCAAAATAAAATAATATTAATTTATTA
323 GTCATAAAACAATT-TTCTCAATTCATAGT-AACTTATTCAAAATAAAATAAAATGAATTTATTA
* *
97533 ATAATCCAAAAATTAATAA-TAAAGAGATTTAAAAAATGACTT-TGTTTA-CTAAACAAATTTAA
386 ATAATCCAAAAAATAATAAGT-AAGAGATTTAAAAAAT-AATTCTGTTTACCT-AACAAATTTAA
* * * * *
97595 ATAATTAGGACTGTTTGAATAATTATCTATTTGAAAT-A-GCTATAACCTTTTGTCTTGTAAGAA
448 AAAATTA-GACTATTTGAACAATTATATATTTCAAATCATGCT-T-ACCTTTTGTCTTGTAA-AA
*
97658 AAG-AAAT-TTTCTGTTCATCTAAGC
509 AAGCAAATGTTTCTGTTCATATAAGC
*
97682 TTATTTCG-AATAAAATAATAGA-AATTTATTAATA-TT-AAGACAATTAATAAGA
1 TTA-TTCGAAATAAAATAATA-ATAATCTATTAATATTTCAA-A-AATTAATAAGA
97734 AAAAGATTTA
Statistics
Matches: 479, Mismatches: 87, Indels: 40
0.79 0.14 0.07
Matches are distributed among these distances:
528 2 0.00
529 9 0.02
530 214 0.45
531 53 0.11
532 4 0.01
534 10 0.02
536 2 0.00
537 3 0.01
538 182 0.38
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (534 bp):
TTATTCGAAATAAAATAATAATAATCTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATA
AATCTATGTACCAAACCAATTCAAATAGTTATGACTATCTGAACAATTATATAGTTCAAATCATT
ATAACCTTTTGTTATATCATAAAATAATTATTTCTATTCATACAAGCTTATTCAAAATAAAACAA
TACTAATCTAATAATATCCTAAAAATTAATAACAAGAATTTAAAAAATAATTGTTTACCAAACCA
ATTCAAATAATCAAGACAATATGAACAATTATCTATTTCAAATCGTTATGACCTTTTATCTTGTC
ATAAAACAATTTTCTCAATTCATAGTAACTTATTCAAAATAAAATAAAATGAATTTATTAATAAT
CCAAAAAATAATAAGTAAGAGATTTAAAAAATAATTCTGTTTACCTAACAAATTTAAAAAATTAG
ACTATTTGAACAATTATATATTTCAAATCATGCTTACCTTTTGTCTTGTAAAAAAGCAAATGTTT
CTGTTCATATAAGC
Found at i:98286 original size:15 final size:14
Alignment explanation
Indices: 98248--98283 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
98238 AATAAATATT
*
98248 ATATTAATATTAAT
1 ATATTAATATTAAA
98262 ATAATTAATATTAAA
1 AT-ATTAATATTAAA
98277 ATATTAA
1 ATATTAA
98284 ATAATAGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATATTAATATTAAA
Found at i:98405 original size:16 final size:16
Alignment explanation
Indices: 98384--98417 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
98374 TCTATTATTA
98384 TTATATTAATT-TAAAT
1 TTATATT-ATTATAAAT
98400 TTATATTATTATAAAT
1 TTATATTATTATAAAT
98416 TT
1 TT
98418 TCTAATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATATTATTATAAAT
Found at i:98473 original size:20 final size:21
Alignment explanation
Indices: 98427--98473 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
98417 TTCTAATATT
* *
98427 TTAATTAATTAATATATATTA
1 TTAATTAATTAAAATATATAA
98448 TT-ATTAATTAAAATA-ATAA
1 TTAATTAATTAAAATATATAA
98467 TTAATTA
1 TTAATTA
98474 TAACATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.22
20 16 0.70
21 2 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAATTAATTAAAATATATAA
Found at i:98483 original size:16 final size:16
Alignment explanation
Indices: 98430--98484 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
98420 TAATATTTTA
*
98430 ATTAATTAATATATATT
1 ATTAATTAAT-TATAAT
*
98447 ATT-ATTAATTAAAAT
1 ATTAATTAATTATAAT
* *
98462 AATAATTAATTATAAC
1 ATTAATTAATTATAAT
98478 ATTAATT
1 ATTAATT
98485 TTTTTAATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 6 0.19
16 22 0.71
17 3 0.10
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTAATTAATTATAAT
Found at i:98957 original size:166 final size:167
Alignment explanation
Indices: 98713--99024 Score: 361
Period size: 166 Copynumber: 1.9 Consensus size: 167
98703 AGCAATTATT
* * *
98713 TATTTCAAATCTTTATGACATTTTATTCTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
1 TATTTCAAATCGTTATGACA-CTTATTCTGTCATAAAACAATTATTTCTATTCATACAAGCTTAT
* * * * * *
98778 TTGGATTAAAATAATATTAAT-TTATTAATATTTTGATAATTAATAAGTTAA-AAATTTTAGAAA
65 TTGGAATAAAATAATA-CAATGTTATTAATATTCT-AAAATTAATAA-TTAACAAATTTAAAAAA
*
98841 TAAATATGTTTACCTAAACAGCATGACTATTTGAATAGTTAC
127 TAAATATATTTACC-AAACAGCATGACTATTTGAATAGTTAC
* *
98883 TATTTCAAATCGTTATGAC-CTT-TT-TGTCATAAAA-AACTTATTTC-AGTTCATATAAGGTTA
1 TATTTCAAATCGTTATGACACTTATTCTGTCATAAAACAA-TTATTTCTA-TTCATACAAGCTTA
* *
98943 -TTGGAAATAAAATAATACCATGTTATTAATATTCTAAAATTAATAATTAACATATTTAAAAAAT
64 TTTGG-AATAAAATAATACAATGTTATTAATATTCTAAAATTAATAATTAACAAATTTAAAAAAT
*
99007 AAATTTATTTACCAAACA
128 AAATATATTTACCAAACA
99025 AGTTTAAATA
Statistics
Matches: 122, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
164 9 0.07
165 40 0.33
166 51 0.42
167 2 0.02
168 2 0.02
170 18 0.15
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (167 bp):
TATTTCAAATCGTTATGACACTTATTCTGTCATAAAACAATTATTTCTATTCATACAAGCTTATT
TGGAATAAAATAATACAATGTTATTAATATTCTAAAATTAATAATTAACAAATTTAAAAAATAAA
TATATTTACCAAACAGCATGACTATTTGAATAGTTAC
Found at i:100056 original size:14 final size:14
Alignment explanation
Indices: 100016--100063 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
100006 AAATAAGTTA
100016 ATTATAATTTATAAT
1 ATTATAA-TTATAAT
*
100031 AATTAT-AGTATAAT
1 -ATTATAATTATAAT
*
100045 ATTATAATTATATT
1 ATTATAATTATAAT
100059 ATTAT
1 ATTAT
100064 TATAATTAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 5 0.18
14 17 0.61
15 1 0.04
16 5 0.18
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (14 bp):
ATTATAATTATAAT
Found at i:100078 original size:17 final size:17
Alignment explanation
Indices: 100014--100071 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
100004 ACAAATAAGT
* *
100014 TAATTATAAT-TTATAA
1 TAATTATATTATTATTA
*
100030 TAATTATAGTATAATATTA
1 TAATTATA-T-TATTATTA
100049 TAATTATATTATTATTA
1 TAATTATATTATTATTA
100066 TAATTA
1 TAATTA
100072 ACTTATTTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
16 8 0.23
17 13 0.37
18 2 0.06
19 12 0.34
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TAATTATATTATTATTA
Found at i:100160 original size:13 final size:14
Alignment explanation
Indices: 100133--100162 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
100123 ATAATAATAT
100133 ATTGTTTATTATTA
1 ATTGTTTATTATTA
100147 ATTGTTTA-TATTA
1 ATTGTTTATTATTA
100160 ATT
1 ATT
100163 ATTACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (14 bp):
ATTGTTTATTATTA
Found at i:100498 original size:15 final size:15
Alignment explanation
Indices: 100475--100505 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
100465 TAATTTAATT
100475 TATAAATTATAACTA
1 TATAAATTATAACTA
*
100490 TATAGATTATAACTA
1 TATAAATTATAACTA
100505 T
1 T
100506 GAATATTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (15 bp):
TATAAATTATAACTA
Found at i:100705 original size:21 final size:21
Alignment explanation
Indices: 100681--100745 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 21
100671 TAATTATACC
*
100681 TAATATTGATATTATTATTTG
1 TAATATTGATATTATTATTTA
* *
100702 TAAT-CTGTATATTAATTAGTTA
1 TAATATTG-ATATT-ATTATTTA
* *
100724 TAATATT-ATTTTATTATATA
1 TAATATTGATATTATTATTTA
100744 TA
1 TA
100746 GATAATATAT
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
20 10 0.29
21 13 0.38
22 10 0.29
23 1 0.03
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (21 bp):
TAATATTGATATTATTATTTA
Found at i:101324 original size:20 final size:19
Alignment explanation
Indices: 101292--101329 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
101282 TAGAATTTGA
101292 AATAAATTATAATATAAAAT
1 AATAAATTATAAT-TAAAAT
101312 AATAATATT-TAATTAAAA
1 AATAA-ATTATAATTAAAA
101330 ATAAACCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 9 0.53
21 3 0.18
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AATAAATTATAATTAAAAT
Found at i:101522 original size:25 final size:27
Alignment explanation
Indices: 101475--101533 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 27
101465 ACAAATATTA
101475 TAATTATAATATAATTAATTTATTAAT
1 TAATTATAATATAATTAATTTATTAAT
101502 TAATTA-AATATAA-T-ATCTTATTAAT
1 TAATTATAATATAATTAAT-TTATTAAT
*
101527 TATTTAT
1 TAATTAT
101534 TTTATATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.07
25 14 0.48
26 7 0.24
27 6 0.21
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (27 bp):
TAATTATAATATAATTAATTTATTAAT
Found at i:102524 original size:180 final size:179
Alignment explanation
Indices: 101820--102898 Score: 935
Period size: 180 Copynumber: 6.0 Consensus size: 179
101810 AAATACTTAT
* * * * * *
101820 TATTTGAAATAGATAATTATTCTAATAATCTTAACTATTTGAACTAGTTCA-GCAAACACATTTA
1 TATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTT-AGGTAAACAAATTTA
* * * * * *
101884 TTTTTTTAAA--TCT-CTTACTAATTTTTGGAATATTATTAAATTAGTATTATTTGAATT-GAAT
65 -TTTTTTAAATCTCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * * *
101945 AAGC-TAGTATGAAAAGAAACAATTATTTTATGATAAAA-TAAAGATCATAGA
129 AAGCTTA-TATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATA-A
* * * * * * *
101996 GATTTGAGATAGATAATTGTTCAAATAGTCATAAATATTTGAACTAT-TTCGGTAAATAGATTT-
1 TATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT-TGTTAGGTAAACAAATTTA
* * * * * *
102059 TGTTTTTAAA--TCT-CTTATTAATTATCAAAATATTAATAGATTGGTATTATTATA-TTCTAAA
65 T-TTTTTAAATCTCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTC-AAA
* * * * *
102120 TAA--TATACATGAACAAAAATAATTGTTTTACGACAAAACAAAATG-TCATTA
128 TAAGCT-TATATGAACAGAAACAATTGTTTTATGACAAAACAAAA-GATCATAA
** * * *
102171 TGATTTGAAATAGATAA-TAGTTCAAATAAACATGACTATTTGAACTCGTTCGGTAAACAAATTT
1 T-ATTTGAAATAGATAATTA-TTCAAATAGTCATAACTATTTGAACTTGTTAGGTAAACAAATTT
* * *
102235 ATTTTTTAAATCTCAAACTTATTAATTTTTAGAATACTAATAAATTAGTGTTATTTTATTTCAAA
64 ATTTTTTAAATCTC-TACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAA
** * *
102300 TAAAATTGTATGAACAGAAATAATTGTTTTATGACAAAACAAAAGATCATAA
128 TAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAA
* * * *
102352 CTATTTGAAACAAATAATTATTCCAATAGTCATAACTATTTGAACTTGCTAGGTAAACAAATTTA
1 -TATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTAGGTAAACAAATTTA
* * *
102417 TTTTTTAAATCTTCTA-TTATTAATTTTTGGAATTTTAATAAATTAGTATTATTTTATTTCAAAA
65 TTTTTTAAATC-TCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * * * *
102481 AAGC-TATTATGAATAGAAACAATTGGTTTACGACAAAACAAAAGGTAATAA
129 AAGCTTA-TATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAA
* * * * ** * *
102532 CGATTTGAAATAGATAATTCTTTAAATAGTCATAACTATTTGAAATTGTTCA-AAAAATATATTT
1 -TATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTT-AGGTAAACAAATTT
* * * * *
102596 ATTTTTTAAAAT-TTTACTTATTAATTTTTGGAATATTAATAAATTTA-AATTACTTTATTTGAA
64 ATTTTTT-AAATCTCTACTTATTAATTTTTAGAATATTAATAAA-TTAGTATTATTTTATTTCAA
** * * *
102659 ATAAGCTTGCATGAACAGAACCGATTGTTTAATGACAAAACAAAAGATCATAA
127 ATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAA
* * * * * * *
102712 TGTTTTGAAATAGATAATTGTTCAGATAGTCATAACTATTTAAACTTATTCGGTAAACATATTCT
1 T-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTAGGTAAACAAATT-T
* * * * * *
102777 -TTTTTTAATTCTCTTACTCATTAATTTTCAGAATATTAATGAATTAGTATTATCTTACTTCAAA
64 ATTTTTTAAATCTC-TACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAA
** * * * *
102841 TAAGCTTATATGAATTGAAACAAGTGTTTTATTACAAAAGAAAAGGTCATAA
128 TAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAA
102893 TGATTT
1 T-ATTT
102899 ATAATAATTA
Statistics
Matches: 724, Mismatches: 143, Indels: 67
0.78 0.15 0.07
Matches are distributed among these distances:
174 3 0.00
175 68 0.09
176 121 0.17
177 2 0.00
178 2 0.00
179 7 0.01
180 317 0.44
181 198 0.27
182 6 0.01
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (179 bp):
TATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTAGGTAAACAAATTTAT
TTTTTAAATCTCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAA
GCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAA
Found at i:102688 original size:360 final size:354
Alignment explanation
Indices: 101821--102898 Score: 1104
Period size: 361 Copynumber: 3.0 Consensus size: 354
101811 AATACTTATT
* * *
101821 ATTTGAAATAGATAATTATTCT-AATAATCTTAACTATTTGAACTAGTTCAGCAAACACATTTAT
1 ATTTGAAATAGATAATTATT-TAAATAATCATAACTATTTGAACTAGTTCAGAAAACAAATTTA-
* * * *
101885 TTTTTTAAA-TCT-CTTACTAATTTTTGGAATATTATTAAATTAGTATTATTTGAATTG-AATAA
64 TTTTTTAAATTATACTTATTAATTTTTGGAATATTAATAAATTAGTATTATTT-ATTTGAAATAA
* * * * * * *
101947 GCTAGTATGAAAAGAAACAATTATTTTATGATAAAA-TAAAGATCATAGAGATTTGAGATAGATA
128 GCTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATA-ATATTTGAAATAGATA
* * * *
102011 ATTGTTCAAATAGTCATAAATATTTGAACTATTTCGGTAAATAGATTTTGTTTTTAAATCTC--T
192 ATTGTTCCAATAGTCATAACTATTTGAACT-TTTCGGTAAACAAATTTT-TTTTTAAATCTCTAT
* * * * * * * *
102074 TATTAATTATCAAAATATTAATAGATTGGTATTATTATATTCTAAATAA--TATACATGAACAAA
255 TATTAATTTTCAGAATATTAATAAATTAGTATTATTTTATTC-AAATAAGCTATATATGAATAGA
* * *
102137 AATAATTGTTTTACGACAAAACAAAATGTCATTATG
319 AACAATTGTTTTACGACAAAACAAAAGGTCATAATG
* * * * * *
102173 ATTTGAAATAGATAA-TAGTTCAAATAAACATGACTATTTGAACTCGTTCGGTAAACAAATTTAT
1 ATTTGAAATAGATAATTA-TTTAAATAATCATAACTATTTGAACTAGTTCAGAAAACAAATTTAT
* * * * *
102237 TTTTTAAATCTCAAACTTATTAATTTTTAGAATACTAATAAATTAGTGTTATTTTATTTCAAATA
65 TTTTTAAAT-T-ATACTTATTAATTTTTGGAATATTAATAAATTAGTATTA-TTTATTTGAAATA
** * * *
102302 AAATTGTATGAACAGAAATAATTGTTTTATGACAAAACAAAAGATCATAACTATTTGAAACAAAT
127 AGCTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAA-TATTTGAAATAGAT
* * *
102367 AATTATTCCAATAGTCATAACTATTTGAACTTGCTAGGTAAACAAATTTATTTTTTAAATCTTCT
191 AATTGTTCCAATAGTCATAACTATTTGAACTT-TTCGGTAAACAAATTT-TTTTTTAAATC-TCT
** * *
102432 ATTATTAATTTTTGGAATTTTAATAAATTAGTATTATTTTATTTCAAAAAAGCTAT-TATGAATA
253 ATTATTAATTTTCAGAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTATATATGAATA
* * *
102496 GAAACAATTGGTTTACGACAAAACAAAAGGTAATAACG
317 GAAACAATTGTTTTACGACAAAACAAAAGGTCATAATG
* * * * * * *
102534 ATTTGAAATAGATAATTCTTTAAATAGTCATAACTATTTGAAATTGTTCAAAAAATATATTTATT
1 ATTTGAAATAGATAATTATTTAAATAATCATAACTATTTGAACTAGTTCAGAAAACAAATTTATT
* *
102599 TTTTAAAATTTTACTTATTAATTTTTGGAATATTAATAAATTTA-AATTACTTTATTTGAAATAA
66 TTTT-AAATTATACTTATTAATTTTTGGAATATTAATAAA-TTAGTATTA-TTTATTTGAAATAA
* * * * *
102663 GCTTGCATGAACAGAACCGATTGTTTAATGACAAAACAAAAGATCATAATGTTTTGAAATAGATA
128 GCTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT-ATTTGAAATAGATA
* * *
102728 ATTGTT-CAGATAGTCATAACTATTTAAACTTATTCGGTAAACATATTCTTTTTTTAATTCTCTT
192 ATTGTTCCA-ATAGTCATAACTATTTGAACTT-TTCGGTAAACAAATT-TTTTTTTAAATCTC-T
* * *
102792 ACTCATTAATTTTCAGAATATTAATGAATTAGTATTATCTTACTTCAAATAAGCT-TATATGAAT
253 A-TTATTAATTTTCAGAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTATATATGAAT
* * ** *
102856 TGAAACAAGTGTTTTATTACAAAAGAAAAGGTCATAATG
316 AGAAACAATTGTTTTACGACAAAACAAAAGGTCATAATG
102895 ATTT
1 ATTT
102899 ATAATAATTA
Statistics
Matches: 592, Mismatches: 107, Indels: 45
0.80 0.14 0.06
Matches are distributed among these distances:
351 11 0.02
352 51 0.09
353 1 0.00
355 34 0.06
356 39 0.07
357 70 0.12
358 3 0.01
359 5 0.01
360 183 0.31
361 187 0.32
362 8 0.01
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (354 bp):
ATTTGAAATAGATAATTATTTAAATAATCATAACTATTTGAACTAGTTCAGAAAACAAATTTATT
TTTTAAATTATACTTATTAATTTTTGGAATATTAATAAATTAGTATTATTTATTTGAAATAAGCT
TGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAATATTTGAAATAGATAATTG
TTCCAATAGTCATAACTATTTGAACTTTTCGGTAAACAAATTTTTTTTTAAATCTCTATTATTAA
TTTTCAGAATATTAATAAATTAGTATTATTTTATTCAAATAAGCTATATATGAATAGAAACAATT
GTTTTACGACAAAACAAAAGGTCATAATG
Found at i:102841 original size:541 final size:533
Alignment explanation
Indices: 101820--102892 Score: 1185
Period size: 541 Copynumber: 2.0 Consensus size: 533
101810 AAATACTTAT
* * * * * *
101820 TATTTGAAATAGATAATTATTCTAATAATCTTAACTATTTGAACTAGTTCAGCAAACACATTTAT
1 TATTTGAAACAAATAATTATTCCAATAATCATAACTATTTGAACTAGCTCAGCAAACAAATTTAT
* * *
101885 TTTTTTAAATCTCTTACTAATTTTTGGAATATTATTAAATTAGTATTATTTGAATTGAATAAGCT
66 TTTTTTAAATCTCTTACTAATTTTTGGAATATTAATAAATTAGTATTATTTGAATTAAAAAAGCT
* * * * * * *
101950 AGTATGAAAAGAAACAATTATTTTATGATAAAATAAAGATCATAGAGATTTGAGATAGATAATTG
131 AGTATGAAAAGAAACAATTAGTTTACGACAAAAAAAAGATAATAGAGATTTGAAATAGATAATTC
* ***
102015 TTCAAATAGTCATAAATATTTGAACTATTTCGGTAAATAGATTTTGTTTTTAAATCTCTTATTAA
196 TTCAAATAGTCATAAATATTTGAAATATTTCAAAAAATAGATTTTGTTTTTAAATCTCTTATTAA
* ** *
102080 TTATCAAAATATTAATAGATTGGTATTATTATATTCTAAATAATATACATGAACAAAAATAATTG
261 TTATCAAAATATTAATAAATTGAAATTATTATATTCTAAATAATATACATGAACAAAAACAATTG
* * *
102145 TTTTACGACAAAACAAAATGTCATTATGATTTGAAATAGATAATAGTTCAAATAAACATGACTAT
326 TTTAACGACAAAACAAAATGTCATAATGATTTGAAATAGATAATAGTTCAAATAAACATAACTAT
* * * *
102210 TTGAACTCGTTCGGTAAACAAATTTATTTTTTAAATCTCAAACTTATTAATTTTTAGAATACTAA
391 TTAAACTCATTCGGTAAACAAATTTATTTTTTAAATCTCAAACTCATTAATTTTCAGAATACTAA
* * * * * *
102275 TAAATTAGTGTTATTTTATTTCAAATAAAATTGTATGAACAGAAATAATTGTTTTATGACAAAAC
456 TAAATTAGTATTATCTTACTTCAAATAAAATTATATGAACAGAAACAAGTGTTTTATGACAAAAC
102340 AAAAGATCATAAC
521 AAAAGATCATAAC
* * *
102353 TATTTGAAACAAATAATTATTCCAATAGTCATAACTATTTGAACTTGCT-AGGTAAACAAATTTA
1 TATTTGAAACAAATAATTATTCCAATAATCATAACTATTTGAACTAGCTCA-GCAAACAAATTTA
* * * *
102417 -TTTTTTAAATCTTCTATTATTAATTTTTGGAATTTTAATAAATTAGTATTATTTTATTTCAAAA
65 TTTTTTTAAATC-TC--TTACTAATTTTTGGAATATTAATAAATTAGTATTATTTGAATT-AAAA
* * * *
102481 AAGCTATTATGAATAGAAACAATTGGTTTACGACAAAACAAAAGGTAATA-ACGATTTGAAATAG
126 AAGCTAGTATGAAAAGAAACAATTAGTTTACGACAAAA-AAAAGATAATAGA-GATTTGAAATAG
* * *
102545 ATAATTCTTTAAATAGTCATAACTATTTGAAAT-TGTTCAAAAAATATATTTAT-TTTTTAAAAT
189 ATAATTCTTCAAATAGTCATAAATATTTGAAATAT-TTCAAAAAATAGATTT-TGTTTTT-AAA-
* * *** * *
102608 TTTACTTATTAATTTTTGGAATATTAATAAATTTAAATTACTT-TATT-TGAAATAAGCT-TGCA
250 TCT-CTTATTAATTATCAAAATATTAATAAATTGAAATTA-TTATATTCT-AAATAA--TATACA
* * * * * *
102670 TGAACAGAACCGATTGTTTAATGACAAAACAAAA-GATCATAATGTTTTGAAATAGATAATTGTT
310 TGAACAAAAACAATTGTTTAACGACAAAACAAAATG-TCATAATGATTTGAAATAGATAATAGTT
* ** * * * **
102734 CAGATAGTCATAACTATTTAAACTTATTCGGTAAACATATTCT-TTTTTTAATTCTCTTACTCAT
374 CAAATAAACATAACTATTTAAACTCATTCGGTAAACAAATT-TATTTTTTAAATCTCAAACTCAT
* * ** **
102798 TAATTTTCAGAATATTAATGAATTAGTATTATCTTACTTCAAATAAGCTTATATGAATTGAAACA
438 TAATTTTCAGAATACTAATAAATTAGTATTATCTTACTTCAAATAAAATTATATGAACAGAAACA
* * *
102863 AGTGTTTTATTACAAAAGAAAAGGTCATAA
503 AGTGTTTTATGACAAAACAAAAGATCATAA
102893 TGATTTATAA
Statistics
Matches: 441, Mismatches: 81, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
532 12 0.03
533 55 0.12
535 38 0.09
536 36 0.08
537 65 0.15
538 4 0.01
539 3 0.01
540 39 0.09
541 187 0.42
542 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (533 bp):
TATTTGAAACAAATAATTATTCCAATAATCATAACTATTTGAACTAGCTCAGCAAACAAATTTAT
TTTTTTAAATCTCTTACTAATTTTTGGAATATTAATAAATTAGTATTATTTGAATTAAAAAAGCT
AGTATGAAAAGAAACAATTAGTTTACGACAAAAAAAAGATAATAGAGATTTGAAATAGATAATTC
TTCAAATAGTCATAAATATTTGAAATATTTCAAAAAATAGATTTTGTTTTTAAATCTCTTATTAA
TTATCAAAATATTAATAAATTGAAATTATTATATTCTAAATAATATACATGAACAAAAACAATTG
TTTAACGACAAAACAAAATGTCATAATGATTTGAAATAGATAATAGTTCAAATAAACATAACTAT
TTAAACTCATTCGGTAAACAAATTTATTTTTTAAATCTCAAACTCATTAATTTTCAGAATACTAA
TAAATTAGTATTATCTTACTTCAAATAAAATTATATGAACAGAAACAAGTGTTTTATGACAAAAC
AAAAGATCATAAC
Found at i:102923 original size:21 final size:21
Alignment explanation
Indices: 102898--102937 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
102888 CATAATGATT
102898 TATAA-TAATTAAATCTAATTA
1 TATAATTAATT-AATCTAATTA
102919 TATAATTAATTAATCTAAT
1 TATAATTAATTAATCTAAT
102938 ATTTGTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (21 bp):
TATAATTAATTAATCTAATTA
Found at i:103570 original size:10 final size:10
Alignment explanation
Indices: 103539--103573 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
103529 AGTTATTAAT
*
103539 ATTAATATTA
1 ATTATTATTA
103549 A-TATTATTA
1 ATTATTATTA
103558 ATTATTATTA
1 ATTATTATTA
103568 ATTATT
1 ATTATT
103574 TAGTGTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
ATTATTATTA
Found at i:103632 original size:27 final size:26
Alignment explanation
Indices: 103545--103667 Score: 76
Period size: 27 Copynumber: 4.7 Consensus size: 26
103535 TAATATTAAT
* * *
103545 ATTAATATTATTAATTATTATTAATTA
1 ATTAATATTAATAATTA-TAATAAATA
* * *
103572 TTTAGTGTTAATAATTAT--TAATATA
1 ATTAATATTAATAATTATAATAA-ATA
*
103597 CATT-ATATT-GTATATTATAATAAATA
1 -ATTAATATTAATA-ATTATAATAAATA
* *
103623 ATTTAATATTAATAATTATAATTATTA
1 A-TTAATATTAATAATTATAATAAATA
103650 ATTAATATT-ATAACTTAT
1 ATTAATATTAATAA-TTAT
103668 TAAATTGTTT
Statistics
Matches: 75, Mismatches: 12, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
24 5 0.07
25 15 0.20
26 20 0.27
27 33 0.44
28 2 0.03
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (26 bp):
ATTAATATTAATAATTATAATAAATA
Found at i:103643 original size:20 final size:19
Alignment explanation
Indices: 103620--103662 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
103610 ATTATAATAA
103620 ATAATTTAAT-ATTAATAATT
1 ATAA-TTAATAATTAAT-ATT
*
103640 ATAATTATTAATTAATATT
1 ATAATTAATAATTAATATT
103659 ATAA
1 ATAA
103663 CTTATTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATAATTAATAATTAATATT
Found at i:103667 original size:20 final size:20
Alignment explanation
Indices: 103630--103670 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
103620 ATAATTTAAT
103630 ATTAATAATTATAATTATTA
1 ATTAATAATTATAATTATTA
103650 ATTAAT-ATTATAACTTATTA
1 ATTAATAATTATAA-TTATTA
103670 A
1 A
103671 ATTGTTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTAATAATTATAATTATTA
Found at i:103774 original size:17 final size:17
Alignment explanation
Indices: 103752--103805 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 17
103742 AAGATAAATT
103752 TAATATTATAATTTAAA
1 TAATATTATAATTTAAA
103769 TAATA-T-TAA-TT-AA
1 TAATATTATAATTTAAA
103782 TAATATTGAT-ATATTAAA
1 TAATATT-ATAAT-TTAAA
103800 TAATAT
1 TAATAT
103806 ATGATTAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
13 7 0.23
14 3 0.10
15 4 0.13
16 2 0.06
17 7 0.23
18 8 0.26
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
TAATATTATAATTTAAA
Found at i:104015 original size:12 final size:12
Alignment explanation
Indices: 103991--104024 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
103981 TTATTATATT
103991 TAAATTATATTAA
1 TAAATT-TATTAA
104004 TAAATTTATTAA
1 TAAATTTATTAA
*
104016 TTAATTTAT
1 TAAATTTAT
104025 ACAATTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TAAATTTATTAA
Found at i:104226 original size:14 final size:14
Alignment explanation
Indices: 104203--104240 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
104193 TCCATATATT
*
104203 TAATTAAATATTTA
1 TAATAAAATATTTA
104217 -AATAATAATATTTA
1 TAATAA-AATATTTA
104231 TAATAAAATA
1 TAATAAAATA
104241 ATATAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 4 0.19
14 12 0.57
15 5 0.24
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TAATAAAATATTTA
Found at i:104368 original size:20 final size:18
Alignment explanation
Indices: 104333--104373 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 18
104323 TATATAAAAA
104333 ATAATTTAAATTATTATT
1 ATAATTTAAATTATTATT
104351 ATAATTTATAACTTATTATT
1 ATAATTTA-AA-TTATTATT
104371 ATA
1 ATA
104374 TTAAGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.38
19 2 0.10
20 11 0.52
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
ATAATTTAAATTATTATT
Found at i:104405 original size:20 final size:19
Alignment explanation
Indices: 104341--104426 Score: 61
Period size: 20 Copynumber: 4.3 Consensus size: 19
104331 AAATAATTTA
*
104341 AATTATTAT-TATAATTTAT
1 AATTATTATATATAATAT-T
*
104360 AACTTATTATTATATTAAGATTTT
1 AA-TTATTA-TATA-T-A-ATATT
104384 AATTATTATATATTAATATT
1 AATTATTATATA-TAATATT
*
104404 AATTA-TAAATATAATA-T
1 AATTATTATATATAATATT
104421 AATTAT
1 AATTAT
104427 GTTATAACCC
Statistics
Matches: 58, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
17 6 0.10
18 5 0.09
19 7 0.12
20 15 0.26
21 2 0.03
22 8 0.14
23 7 0.12
24 4 0.07
25 4 0.07
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (19 bp):
AATTATTATATATAATATT
Found at i:104408 original size:17 final size:17
Alignment explanation
Indices: 104388--104426 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
104378 GATTTTAATT
*
104388 ATTATATAT-TAATATTA
1 ATTATAAATATAATA-TA
104405 ATTATAAATATAATATA
1 ATTATAAATATAATATA
104422 ATTAT
1 ATTAT
104427 GTTATAACCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATAAATATAATATA
Found at i:104645 original size:10 final size:11
Alignment explanation
Indices: 104620--104654 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
104610 ATAAGGATGT
104620 TTATTATCATAA
1 TTATTAT-ATAA
104632 TTATTATA-AA
1 TTATTATATAA
104642 TTATTATATAA
1 TTATTATATAA
104653 TT
1 TT
104655 TAATATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 5 0.23
12 7 0.32
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (11 bp):
TTATTATATAA
Found at i:104661 original size:25 final size:25
Alignment explanation
Indices: 104633--104685 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
104623 TTATCATAAT
*
104633 TATTATAAATTAT-TATATAATTTAA
1 TATTA-AAATAATATATATAATTTAA
**
104658 TATTAAAATAATATATATTTTTTAA
1 TATTAAAATAATATATATAATTTAA
104683 TAT
1 TAT
104686 ATCTATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TATTAAAATAATATATATAATTTAA
Found at i:105235 original size:13 final size:13
Alignment explanation
Indices: 105217--105242 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105207 TTATAGTCAT
105217 AACTATAATTATA
1 AACTATAATTATA
105230 AACTATAATTATA
1 AACTATAATTATA
105243 TTTAATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
AACTATAATTATA
Found at i:105362 original size:17 final size:16
Alignment explanation
Indices: 105332--105370 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
105322 TATAATAATT
105332 ATATGAATAAATTATAA
1 ATAT-AATAAATTATAA
*
105349 ACTATAATATATTATAA
1 A-TATAATAAATTATAA
105366 ATATA
1 ATATA
105371 TTTTTTCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 4 0.20
17 13 0.65
18 3 0.15
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (16 bp):
ATATAATAAATTATAA
Found at i:105434 original size:16 final size:17
Alignment explanation
Indices: 105403--105454 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 17
105393 CTAATATTTG
105403 ATTA-TATAATTATAAT
1 ATTACTATAATTATAAT
105419 ATTACTATAATT-TAAT
1 ATTACTATAATTATAAT
* *
105435 ATAACTATAA-TATATT
1 ATTACTATAATTATAAT
105451 ATTA
1 ATTA
105455 TATTAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 1 0.03
16 23 0.74
17 7 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTACTATAATTATAAT
Found at i:105526 original size:14 final size:14
Alignment explanation
Indices: 105507--105534 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
105497 ATAATTATGT
105507 ATTATAATTAATAG
1 ATTATAATTAATAG
105521 ATTATAATTAATAG
1 ATTATAATTAATAG
105535 TAATATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (14 bp):
ATTATAATTAATAG
Found at i:105974 original size:20 final size:19
Alignment explanation
Indices: 105928--105974 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
105918 TAAATAGTTT
*
105928 TATTATTTGTTTAAAATAA
1 TATTATTTGATTAAAATAA
105947 TATATATTT-ATTAATAATAA
1 TAT-TATTTGATTAA-AATAA
105967 CTATTATT
1 -TATTATT
105975 ATGTTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 7 0.29
20 14 0.58
21 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
TATTATTTGATTAAAATAA
Found at i:106348 original size:13 final size:14
Alignment explanation
Indices: 106317--106362 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
106307 TAATAATTCT
106317 TATAATTTAAT-TA
1 TATAATTTAATATA
*
106330 TATAATTTAGTATA
1 TATAATTTAATATA
*
106344 T-TAA-TTATTATA
1 TATAATTTAATATA
106356 TATAATT
1 TATAATT
106363 CCATTTAAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
12 8 0.29
13 16 0.57
14 4 0.14
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (14 bp):
TATAATTTAATATA
Found at i:106541 original size:13 final size:14
Alignment explanation
Indices: 106516--106563 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
106506 TAATTATCTG
106516 AAATTATAATAATT
1 AAATTATAATAATT
106530 AAATTA-AATAATTT
1 AAATTATAATAA-TT
* *
106544 TAATTTTAAT-ATT
1 AAATTATAATAATT
106557 AAATTAT
1 AAATTAT
106564 TAAAATGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
13 12 0.43
14 13 0.46
15 3 0.11
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATTATAATAATT
Found at i:106547 original size:22 final size:22
Alignment explanation
Indices: 106517--106565 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
106507 AATTATCTGA
106517 AATTATAATAATTAA-ATTAAAT
1 AATTATAAT-ATTAATATTAAAT
* *
106539 AATTTTAATTTTAATATTAAAT
1 AATTATAATATTAATATTAAAT
*
106561 TATTA
1 AATTA
106566 AAATGATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTATAATATTAATATTAAAT
Found at i:106903 original size:20 final size:19
Alignment explanation
Indices: 106873--106913 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
106863 TAATTTAAAG
*
106873 TTATTAATTATTAGATTAA
1 TTATTAATTATTAAATTAA
106892 TTATTAAATTATTAAATTAA
1 TTATT-AATTATTAAATTAA
106912 TT
1 TT
106914 TAGTGTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TTATTAATTATTAAATTAA
Found at i:108305 original size:24 final size:23
Alignment explanation
Indices: 108261--108362 Score: 70
Period size: 23 Copynumber: 4.4 Consensus size: 23
108251 ATTTATATCA
108261 ATTAATTTAATAAATATATATTT
1 ATTAATTTAATAAATATATATTT
*
108284 ATTAATATTAATAAAT-TA-ATAT
1 ATTAAT-TTAATAAATATATATTT
* * *
108306 AATCA-TTAATAAATTAAATAATTT
1 ATTAATTTAATAAA-TATAT-ATTT
*
108330 A-TAATTT-ATAATTTATATATTT
1 ATTAATTTAATAA-ATATATATTT
108352 AAATTAATTTA
1 --ATTAATTTA
108363 TATTAGTTAA
Statistics
Matches: 60, Mismatches: 8, Indels: 19
0.69 0.09 0.22
Matches are distributed among these distances:
20 8 0.13
21 1 0.02
22 11 0.18
23 18 0.30
24 16 0.27
25 6 0.10
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (23 bp):
ATTAATTTAATAAATATATATTT
Found at i:108313 original size:20 final size:18
Alignment explanation
Indices: 108286--108327 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 18
108276 ATATATTTAT
108286 TAATATTAATAAATTAATA
1 TAATATTAATAAATTAA-A
108305 TAATCATTAATAAATTAAA
1 TAAT-ATTAATAAATTAAA
108324 TAAT
1 TAAT
108328 TTATAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATATTAATAAATTAAA
Found at i:108333 original size:7 final size:7
Alignment explanation
Indices: 108323--108356 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
108313 AATAAATTAA
108323 ATAATTT
1 ATAATTT
108330 ATAATTT
1 ATAATTT
108337 ATAATTT
1 ATAATTT
108344 ATATATTT
1 ATA-ATTT
108352 A-AATT
1 ATAATT
108357 AATTTATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 3 0.12
7 18 0.69
8 5 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATAATTT
Found at i:108374 original size:19 final size:18
Alignment explanation
Indices: 108338--108378 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
108328 TTATAATTTA
*
108338 TAATTTATATATTTAAAT
1 TAATTTATATAGTTAAAT
108356 TAATTTATATTAGTTAAAT
1 TAATTTATA-TAGTTAAAT
108375 TAAT
1 TAAT
108379 ATAAAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TAATTTATATAGTTAAAT
Found at i:108522 original size:15 final size:16
Alignment explanation
Indices: 108497--108526 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
108487 TCTATACAAT
108497 TATTAAATTAATTAAA
1 TATTAAATTAATTAAA
108513 TATT-AATTAATTAA
1 TATTAAATTAATTAA
108527 TTAATTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TATTAAATTAATTAAA
Found at i:108542 original size:19 final size:18
Alignment explanation
Indices: 108502--108553 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
108492 ACAATTATTA
*
108502 AATTAATTAAATATTAATT
1 AATTAATT-AATATTAAAT
*
108521 AATTAATTAATTTGTAAAT
1 AATTAATTAATAT-TAAAT
*
108540 AATT-ATTAAAATTA
1 AATTAATTAATATTA
108554 CTAGTTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.07
18 10 0.36
19 16 0.57
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
AATTAATTAATATTAAAT
Found at i:108942 original size:25 final size:26
Alignment explanation
Indices: 108912--108979 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
108902 TTTAATTATC
*
108912 TATTTTAATTGTAATTA-TATA-ACTA
1 TATTTTAATT-TAATTATTATATACAA
*
108937 TATTTTTATTTAA-TATTATATACAA
1 TATTTTAATTTAATTATTATATACAA
*
108962 TA-TTTAATTTAATAATTA
1 TATTTTAATTTAATTATTA
108980 AATTAATTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
23 2 0.06
24 16 0.44
25 18 0.50
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (26 bp):
TATTTTAATTTAATTATTATATACAA
Found at i:108956 original size:24 final size:26
Alignment explanation
Indices: 108912--108975 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 26
108902 TTTAATTATC
*
108912 TATTTTAATTGTAAT-TATATA-ACTA
1 TATTTTAATT-TAATATATATATACAA
*
108937 TATTTTTATTTAATAT-TATATACAA
1 TATTTTAATTTAATATATATATACAA
108962 TA-TTTAATTTAATA
1 TATTTTAATTTAATA
108976 ATTAAATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
24 19 0.56
25 15 0.44
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.55
Consensus pattern (26 bp):
TATTTTAATTTAATATATATATACAA
Found at i:108987 original size:17 final size:18
Alignment explanation
Indices: 108960--109004 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
108950 TATTATATAC
*
108960 AATATTTAATTTAATAATT
1 AATA-TTAATTCAATAATT
*
108979 AA-ATTAATTCAATTATT
1 AATATTAATTCAATAATT
108996 AATATTAAT
1 AATATTAAT
109005 AAATTAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 14 0.61
18 7 0.30
19 2 0.09
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
AATATTAATTCAATAATT
Found at i:109030 original size:26 final size:26
Alignment explanation
Indices: 108951--109031 Score: 69
Period size: 26 Copynumber: 3.0 Consensus size: 26
108941 TTTATTTAAT
*
108951 ATTATATACAATATTTAATTTAATAATTAA
1 ATTA-ATATAATATTTAA-TT-ATAA-TAA
108981 ATTAAT-TCAAT-TATTAA-TATTAATAA
1 ATTAATAT-AATAT-TTAATTA-TAATAA
109007 ATTAATATAATATTTAATTATAATA
1 ATTAATATAATATTTAATTATAATA
109032 TTTAAATATT
Statistics
Matches: 44, Mismatches: 1, Indels: 16
0.72 0.02 0.26
Matches are distributed among these distances:
26 22 0.50
27 8 0.18
28 1 0.02
29 9 0.20
30 4 0.09
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (26 bp):
ATTAATATAATATTTAATTATAATAA
Found at i:109744 original size:182 final size:178
Alignment explanation
Indices: 109146--109829 Score: 587
Period size: 182 Copynumber: 3.8 Consensus size: 178
109136 GATTTAATAA
* ** *
109146 ATGACCTTTGTTTTGTCATAAAACAATTGTTTTTGATCATACAAGCTTATTCGAAATAAAATAAT
1 ATGACCTTTGTTTTGTCATAAAACAATTATTTCAGATCATACAAGCTTATTCAAAATAAAATAAT
* *
109211 ACTAATTTATTAATATTTCAAAAATTAATAAG--AGATTTTAAAAAATAAAATTGTTTACCAAAC
66 ACTAATTTATTAATATTTCAAAAATTAATAAGCAAAATTTTAAAAAATAAATTTGTTTACCAAAC
* * * * *
109274 AAGTTCAAATAGTTAGGACTATTTGAACAACTATCAATCTCAAATCA-TT
131 AAGTTCAAATAGTTA-GACTATTTGAAAAATTATCTATATAAAAT-AGTT
* * * ***
109323 GA-GATCTGT-TTTTGTCATAAAACAATTGATTTC-GATCATAGAAGCTTATTC-GGTTAAAAAT
1 -ATGACCTTTGTTTTGTCATAAAACAATT-ATTTCAGATCATACAAGCTTATTCAAAAT-AAAAT
* * * * *
109384 ATTACTAATTTAATAATATTTCAAAAATTAATAGGCAAGAGA-TTTAAAAAA-AAATTTGCTTAT
63 AATACTAATTTATTAATATTTCAAAAATTAATAAGCAA-A-ATTTTAAAAAATAAATTTGTTTAC
** * * * * * * * * * *
109447 GGAACCAGTTCAAATAATTAAAATGATTAGAATAATTATCTATTTTAGATCGTT
126 CAAACAAGTTCAAATAGTTAGACT-ATTTGAAAAATTATCTATATAAAATAGTT
* * * * * * * * * * *
109501 CTTACCTTTTGTTTAGTCATCAAATACTTGTTTCATATCTTACAAGTTTATTCATAATAAAATAA
1 ATGACC-TTTGTTTTGTCATAAAACAATTATTTCAGATCATACAAGCTTATTCAAAATAAAATAA
* * * *
109566 TCCAAATTTATTAACA-TTCAAAAAATTAATAAGCAAAATATTTGAAAAAATAAATTTGTTTACA
65 TACTAATTTATTAATATTTC-AAAAATTAATAAGCAAAAT-TTT-AAAAAATAAATTTGTTTACC
*
109630 AAACAAGTTCAAATAGTTATGACTATTTGAAAAATTATTTATATAAAATAGTT
127 AAACAAGTTCAAATAGTTA-GACTATTTGAAAAATTATCTATATAAAATAGTT
* * * * *
109683 ATGACCTTTTGTTTTGACATAAAATAATTATTTCAGTTCATAGAAGCTTATTTAAAATAAAATAA
1 ATGACC-TTTGTTTTGTCATAAAACAATTATTTCAGATCATACAAGCTTATTCAAAATAAAATAA
* ** * * * *
109748 TACTAATTTCTTAATATTTTGAAAGTTAATAAGCAAGAGTTTTAAAATATAAATTTGTTTACCGA
65 TACTAATTTATTAATATTTCAAAAATTAATAAGCAA-AATTTTAAAAAATAAATTTGTTTACCAA
* *
109813 ACAAATTCAATTAGTTA
129 ACAAGTTCAAATAGTTA
109830 CAACTACTTA
Statistics
Matches: 392, Mismatches: 93, Indels: 39
0.75 0.18 0.07
Matches are distributed among these distances:
175 1 0.00
176 72 0.18
177 10 0.03
178 50 0.13
179 19 0.05
180 65 0.17
181 41 0.10
182 128 0.33
183 6 0.02
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (178 bp):
ATGACCTTTGTTTTGTCATAAAACAATTATTTCAGATCATACAAGCTTATTCAAAATAAAATAAT
ACTAATTTATTAATATTTCAAAAATTAATAAGCAAAATTTTAAAAAATAAATTTGTTTACCAAAC
AAGTTCAAATAGTTAGACTATTTGAAAAATTATCTATATAAAATAGTT
Found at i:110175 original size:19 final size:19
Alignment explanation
Indices: 110132--110176 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
110122 TGGATCTAAG
110132 AATTC-AATATTAAATTAT
1 AATTCTAATATTAAATTAT
110150 -ATT-TAATA-TAAATTATT
1 AATTCTAATATTAAATTA-T
110167 AATTCTAATA
1 AATTCTAATA
110177 ATTTATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
16 7 0.30
17 8 0.35
18 3 0.13
19 5 0.22
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (19 bp):
AATTCTAATATTAAATTAT
Found at i:110300 original size:14 final size:14
Alignment explanation
Indices: 110283--110315 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
110273 TTATATTTAA
*
110283 TAAATTATTATAGT
1 TAAATTATTATACT
110297 TAAA-TATTATACT
1 TAAATTATTATACT
110310 TAAATT
1 TAAATT
110316 TAATAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (14 bp):
TAAATTATTATACT
Found at i:110497 original size:18 final size:18
Alignment explanation
Indices: 110476--110514 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
110466 ACAGATAAAT
* *
110476 TTTAATATTGTTAAATAA
1 TTTAATAATATTAAATAA
*
110494 TTTAATAATATTTAATAA
1 TTTAATAATATTAAATAA
110512 TTT
1 TTT
110515 TTATCATAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTAATAATATTAAATAA
Found at i:112051 original size:21 final size:21
Alignment explanation
Indices: 112025--112065 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
112015 AATTAAATAG
112025 TATTTAATTATTTAAATATTC
1 TATTTAATTATTTAAATATTC
112046 TATTTAATTATTTAAATATT
1 TATTTAATTATTTAAATATT
112066 TAATATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTTAATTATTTAAATATTC
Found at i:112086 original size:13 final size:13
Alignment explanation
Indices: 112049--112106 Score: 59
Period size: 13 Copynumber: 4.5 Consensus size: 13
112039 AATATTCTAT
112049 TTAATTAT-TTAA
1 TTAATTATATTAA
* *
112061 ATATTTAATATTAA
1 TTAATT-ATATTAA
112075 TTAATTATATTAA
1 TTAATTATATTAA
112088 TTAA-TATAATT-A
1 TTAATTAT-ATTAA
112100 TTAATTA
1 TTAATTA
112107 AGTTTAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
12 12 0.32
13 18 0.47
14 8 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTAATTATATTAA
Found at i:112469 original size:12 final size:12
Alignment explanation
Indices: 112449--112478 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
112439 ATTAATCTAT
112449 ATATATTATTATA
1 ATAT-TTATTATA
112462 ATATTTATTATA
1 ATATTTATTATA
112474 ATATT
1 ATATT
112479 AAGAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
ATATTTATTATA
Found at i:113394 original size:25 final size:27
Alignment explanation
Indices: 113354--113425 Score: 89
Period size: 25 Copynumber: 2.8 Consensus size: 27
113344 AACAAAATAC
113354 TAATATTATAAAAATATT-ATAATTA-
1 TAATATTATAAAAATATTAATAATTAG
* * *
113379 TTATATTATAATAATATTAATTATTAG
1 TAATATTATAAAAATATTAATAATTAG
113406 TAATATTAT--AAATATTAATA
1 TAATATTATAAAAATATTAATA
113426 TAATAAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 25 0.64
26 6 0.15
27 8 0.21
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (27 bp):
TAATATTATAAAAATATTAATAATTAG
Found at i:113409 original size:16 final size:16
Alignment explanation
Indices: 113368--113415 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
113358 ATTATAAAAA
113368 TATTATAATTATTATAT
1 TATTATAA-TATTATAT
*
113385 TATAATAATATTA-AT
1 TATTATAATATTATAT
113400 TATTAGTAATATTATA
1 TATTA-TAATATTATA
113416 AATATTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.22
16 13 0.48
17 8 0.30
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
TATTATAATATTATAT
Found at i:113421 original size:18 final size:18
Alignment explanation
Indices: 113365--113422 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
113355 AATATTATAA
113365 AAATATTATAAT--TATT
1 AAATATTATAATAATATT
113381 --ATATTATAATAATATT
1 AAATATTATAATAATATT
* *
113397 AATTATTAGTAATATTA-T
1 AAATATTA-TAATAATATT
113415 AAATATTA
1 AAATATTA
113423 ATATAATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
14 10 0.29
16 4 0.12
18 13 0.38
19 7 0.21
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
AAATATTATAATAATATT
Found at i:114487 original size:17 final size:16
Alignment explanation
Indices: 114446--114498 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 16
114436 ATTATTATGG
*
114446 ATAATTT-AAATATTT
1 ATAATTTAAAATATTA
114461 ATAATATTAAAATATTA
1 ATAAT-TTAAAATATTA
114478 ATAAATTTAATAATAATTA
1 AT-AATTTAA-AAT-ATTA
114497 AT
1 AT
114499 TTATACTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 5 0.16
16 2 0.06
17 13 0.41
18 6 0.19
19 6 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAATTTAAAATATTA
Found at i:114730 original size:21 final size:21
Alignment explanation
Indices: 114692--114731 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
114682 ATCATAAATT
*
114692 AAAATAATTTTAATTAATACG
1 AAAATAATTTTAACTAATACG
114713 AAAATAA-TTTACACTAATA
1 AAAATAATTTTA-ACTAATA
114732 ATATTATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.35
Consensus pattern (21 bp):
AAAATAATTTTAACTAATACG
Found at i:115009 original size:20 final size:20
Alignment explanation
Indices: 114972--115012 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
114962 ATGTGAATAG
* **
114972 TATAATTAATTATTTAATTA
1 TATAATTAAATAAATAATTA
114992 TATAATTAAATAAATAATTA
1 TATAATTAAATAAATAATTA
115012 T
1 T
115013 TTATATGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TATAATTAAATAAATAATTA
Found at i:115933 original size:20 final size:19
Alignment explanation
Indices: 115897--115943 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
115887 TCGAATTATC
115897 ATAATTA-TATTAATAATT
1 ATAATTATTATTAATAATT
*
115915 ATAATCTATTATTATTAATT
1 ATAAT-TATTATTAATAATT
115935 ATAATTATT
1 ATAATTATT
115944 TATAAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 5 0.19
19 6 0.23
20 15 0.58
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATAATTATTATTAATAATT
Found at i:115946 original size:20 final size:20
Alignment explanation
Indices: 115890--115946 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
115880 TTAATAATCG
* *
115890 AATTATCATAATTATATTAAT
1 AATTATAATTATT-TATTAAT
*
115911 AATTATAATCTA-TTATTATT
1 AATTATAAT-TATTTATTAAT
115931 AATTATAATTATTTAT
1 AATTATAATTATTTAT
115947 AAATTTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 2 0.06
20 19 0.61
21 9 0.29
22 1 0.03
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (20 bp):
AATTATAATTATTTATTAAT
Found at i:116041 original size:13 final size:13
Alignment explanation
Indices: 115897--116041 Score: 59
Period size: 13 Copynumber: 12.1 Consensus size: 13
115887 TCGAATTATC
*
115897 ATAATTATATTA-
1 ATAATTATAATAT
*
115909 ATAATTATAATCT
1 ATAATTATAATAT
*
115922 ATTATTATTAAT-T
1 ATAATTA-TAATAT
*
115935 ATAATTAT-TTAT
1 ATAATTATAATAT
* *
115947 A-AATT-TATTAA
1 ATAATTATAATAT
115958 ATAATTAGT-AT-T
1 ATAATTA-TAATAT
*
115970 -TAA-TAAAATAT
1 ATAATTATAATAT
*
115981 -TAA-AATAAT-T
1 ATAATTATAATAT
*
115991 ATAATTGTAA-AT
1 ATAATTATAATAT
*
116003 -TAATAATTAATAT
1 ATAATTA-TAATAT
*
116016 -TAATTATATTAT
1 ATAATTATAATAT
116028 ATAATTATAATAT
1 ATAATTATAATAT
116041 A
1 A
116042 GTAACAGTTA
Statistics
Matches: 100, Mismatches: 18, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
10 6 0.06
11 27 0.27
12 29 0.29
13 33 0.33
14 5 0.05
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (13 bp):
ATAATTATAATAT
Found at i:116104 original size:18 final size:20
Alignment explanation
Indices: 116058--116104 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 20
116048 GTTAATATTG
116058 TTAATATTAATTGTATATAAA
1 TTAATA-TAATTGTATATAAA
* *
116079 TTATTATAATT-TA-ATAAT
1 TTAATATAATTGTATATAAA
116097 TTAATATA
1 TTAATATA
116105 TTATAATCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 11 0.48
19 2 0.09
20 5 0.22
21 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TTAATATAATTGTATATAAA
Found at i:116395 original size:22 final size:21
Alignment explanation
Indices: 116370--116411 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
116360 TTATAATGCA
*
116370 TAAAATATAATATTTTAATTAG
1 TAAAATATAAT-TATTAATTAG
*
116392 TAAATTATAATTATTAATTA
1 TAAAATATAATTATTAATTA
116412 TATTTAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TAAAATATAATTATTAATTAG
Found at i:116475 original size:19 final size:19
Alignment explanation
Indices: 116394--116475 Score: 55
Period size: 19 Copynumber: 4.2 Consensus size: 19
116384 TTAATTAGTA
116394 AATTATAAT-T-ATTAATT
1 AATTATAATATAATTAATT
116411 ATATT-TAATATAATTTAATATT
1 A-ATTATAATATAA-TT-A-ATT
* * *
116433 AAATTATAAAATAGTT-ATGG
1 -AATTATAATATAATTAAT-T
116453 AATTATAATATAATTAATT
1 AATTATAATATAATTAATT
116472 AATT
1 AATT
116476 GTTTACTAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 18
0.67 0.08 0.25
Matches are distributed among these distances:
17 5 0.10
18 4 0.08
19 20 0.41
20 4 0.08
21 1 0.02
22 8 0.16
23 7 0.14
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.48
Consensus pattern (19 bp):
AATTATAATATAATTAATT
Found at i:116629 original size:30 final size:33
Alignment explanation
Indices: 116595--116669 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 33
116585 ATCAGTTCAA
*
116595 ATAATTATTATTATTATATTA-TA-TATA-AAT
1 ATAATTATTATTACTATATTATTAGTATATAAT
*
116625 ATAA-TATAATTTACTATATTATTAGTATATAAT
1 ATAATTATTA-TTACTATATTATTAGTATATAAT
*
116658 ATATTTAATTAT
1 ATAATT-ATTAT
116670 ATAATTAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
29 4 0.11
30 14 0.40
31 2 0.06
32 4 0.11
33 6 0.17
34 2 0.06
35 3 0.09
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (33 bp):
ATAATTATTATTACTATATTATTAGTATATAAT
Found at i:116670 original size:28 final size:28
Alignment explanation
Indices: 116623--116676 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
116613 TTATATATAA
*
116623 ATATAATATAATTTACTATATTATTAGT
1 ATATAATATAATTTACTATATAATTAGT
*
116651 ATATAATAT-ATTTAATTATATAATTA
1 ATATAATATAATTT-ACTATATAATTA
116677 AATAGTAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (28 bp):
ATATAATATAATTTACTATATAATTAGT
Found at i:117089 original size:15 final size:16
Alignment explanation
Indices: 117064--117103 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
117054 TATATTTTTG
117064 TTAATTCAATTTAATA-
1 TTAATT-AATTTAATAT
117080 TTAATTAA-TTAATAT
1 TTAATTAATTTAATAT
117095 TTAATTAAT
1 TTAATTAAT
117104 AAACAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.27
15 10 0.45
16 6 0.27
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATTAATTTAATAT
Found at i:117366 original size:8 final size:8
Alignment explanation
Indices: 117323--117377 Score: 51
Period size: 8 Copynumber: 7.0 Consensus size: 8
117313 AAAATAAATC
*
117323 AATAATAT
1 AATATTAT
117331 AATATTAT
1 AATATTAT
*
117339 -A-GTTAT
1 AATATTAT
*
117345 AATGTATAT
1 AATAT-TAT
117354 AATATTAT
1 AATATTAT
117362 AATATTAT
1 AATATTAT
*
117370 TATATTAT
1 AATATTAT
117378 TTGAACAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
6 4 0.10
7 2 0.05
8 27 0.68
9 7 0.17
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (8 bp):
AATATTAT
Found at i:117541 original size:15 final size:17
Alignment explanation
Indices: 117509--117543 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
117499 TTATATATAA
117509 ATATAATTGTTAATATT
1 ATATAATTGTTAATATT
117526 ATATAATT-TTAA-ATT
1 ATATAATTGTTAATATT
117541 ATA
1 ATA
117544 ATTATATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 4 0.22
17 8 0.44
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
ATATAATTGTTAATATT
Found at i:117551 original size:23 final size:23
Alignment explanation
Indices: 117488--117552 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
117478 AATTAATTAA
*
117488 TTAACTTATAATTATATATAAAT
1 TTAAATTATAATTATATATAAAT
* * *
117511 AT-AATTGTTAA-TATTATATAATT
1 TTAAATT-ATAATTA-TATATAAAT
117534 TTAAATTATAATTATATAT
1 TTAAATTATAATTATATAT
117553 TATACTCTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
22 5 0.16
23 21 0.66
24 6 0.19
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
TTAAATTATAATTATATATAAAT
Found at i:117678 original size:8 final size:8
Alignment explanation
Indices: 117639--117739 Score: 77
Period size: 8 Copynumber: 12.2 Consensus size: 8
117629 ATAAATTGTT
117639 ATATTATTA
1 ATATTA-TA
117648 A-ATTAGTA
1 ATATTA-TA
117656 TATATTAATA
1 -ATATT-ATA
117666 A-ATTATA
1 ATATTATA
117673 ATATTAATA
1 ATATT-ATA
117682 AT-TTA-A
1 ATATTATA
117688 ATAATTA-A
1 AT-ATTATA
*
117696 ACAATTAATA
1 A-TATT-ATA
117706 ATATTATA
1 ATATTATA
117714 ATATTATA
1 ATATTATA
*
117722 ATATTACA
1 ATATTATA
117730 ATATTATA
1 ATATTATA
117738 AT
1 AT
117740 CTTTTTAAAT
Statistics
Matches: 77, Mismatches: 5, Indels: 21
0.75 0.05 0.20
Matches are distributed among these distances:
6 3 0.04
7 5 0.06
8 49 0.64
9 12 0.16
10 7 0.09
11 1 0.01
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (8 bp):
ATATTATA
Found at i:117694 original size:16 final size:16
Alignment explanation
Indices: 117625--117727 Score: 95
Period size: 16 Copynumber: 6.2 Consensus size: 16
117615 GGAAATATTA
* *
117625 ATTAATAAATTGTTAT
1 ATTAATAAATTATAAT
*
117641 ATTATTAAATTAGTATAT
1 ATTAATAAATTA-TA-AT
117659 ATTAATAAATTATAAT
1 ATTAATAAATTATAAT
*
117675 ATTAATAATTTA-AAT
1 ATTAATAAATTATAAT
117690 AATTAA-ACAATTAATAAT
1 -ATTAATA-AATT-ATAAT
117708 ATT-ATAATATTATAAT
1 ATTAATAA-ATTATAAT
117724 ATTA
1 ATTA
117728 CAATATTATA
Statistics
Matches: 72, Mismatches: 6, Indels: 17
0.76 0.06 0.18
Matches are distributed among these distances:
15 4 0.06
16 41 0.57
17 11 0.15
18 16 0.22
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAATAAATTATAAT
Found at i:117830 original size:12 final size:13
Alignment explanation
Indices: 117790--117850 Score: 53
Period size: 12 Copynumber: 5.0 Consensus size: 13
117780 CTATTCAATA
117790 AATAATTATATTA-
1 AATAATT-TATTAT
117803 ATATAATTTATT-T
1 A-ATAATTTATTAT
117816 AATAA-TTATTAT
1 AATAATTTATTAT
*
117828 AAT-A-TTATTCT
1 AATAATTTATTAT
117839 -ATAATTTATTAT
1 AATAATTTATTAT
117851 CAGTAAACTA
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
10 2 0.05
11 13 0.32
12 14 0.34
13 6 0.15
14 6 0.15
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (13 bp):
AATAATTTATTAT
Done.