Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168368.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_588, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22151
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Found at i:2272 original size:26 final size:26
Alignment explanation
Indices: 2236--2288 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2226 GTTGACTTAG
2236 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
* *
2262 GCATACGAAGTTCATTCCTAGTGTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
2288 G
1 G
2289 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:2735 original size:889 final size:887
Alignment explanation
Indices: 5--9824 Score: 7018
Period size: 889 Copynumber: 10.8 Consensus size: 887
1 TCAT
* * * * * *
5 GTCTACC-AGTTTGGGTCCAAAACTCCTTGTGATAAAATTTTTAAAAATTCCCGAACCATAAAAA
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAA
*
69 GTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
66 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
* * * *
134 GGGACCACTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCG
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
* * * * **
199 CCTAAACCGACCTACCACCCTATCGATCCATGGCATGCGCATCCCACCTCTCTAGCCGATGTAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGT
* * * * * *
264 GCCTGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCCGTCTAACATT
261 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * ** * ** * *
329 GGACCAGACCAAGGGTTACAGTAGCAGGATCAATAGCACACAGGGGGTAATCAATCGATCCCCGG
326 AGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGACCCGATCGATCCTCGG
* * * * * **
394 ATTGTGCGTCCTGCCCCTATGGCTGGCTGAGCGCCCGCACGCTCGTTTAATGGGTTGACTTAGGC
391 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
** *
459 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAACGTAAGATCAGACT-GAACT
456 ATACGGAGTTCATTCCCAGTCTAAGCATACA-AGTTCATTCCCAGTGTAAGATCAGACTAGATC-
* ** * * * * *
523 GGGGGTTGTGGGTGCAAATGATGGGCTCGGGCATGTGCTGGTG-C-CATATTTTTTTTGCCTGGT
519 GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCAT-TTTTTTTCGCCGGGG
**
586 GCACCAT---C---G---C--CGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATTAGGGGG
583 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTA-GGGG
* * *
640 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTAAT
647 GTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
705 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGC
712 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
770 CATTAAAGTGTCT-AAACCT-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTAAACTTCAAG
777 CATTAAAGTGTCTGAAA--TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* * *
833 TTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCAT
840 TTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCAC
* * *** *
881 GTCTACGAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCTTGAATCGTAAAAA
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAA
* * * *
946 GTTTCAATAATCGTGGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACACGAAGGCT
66 GTTTCAAAAATC---GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* * * *
1011 TAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGTATTAGCATGGCAGAAATATGAAGAT
128 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGAT
* * * * * *
1076 ATGCCTAAACCCA-CTGCCACCCTATCAATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGGCGC
193 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGT
* * *
1140 AGTGCCCGCCTGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
258 AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** ** * * * * * *
1205 ATTCA-ATCAGACTGAGGGTTGTAGTAGCAGGATCAATAGCATGCAGGGGGGACCCAATCCATCC
323 A-TCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGACCCGATCGATCC
* * * * *
1269 CCGACTTGCGCATCCTGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTT
387 TCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * ** *
1334 AGGCATACGGAGTTCATTCCTAGTCTAAGCATACAAAGTTCATTCGCAGTGTAAGATTGGACCAG
452 AGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-AAGTTCATTCCCAGTGTAAGATCAGACTAG
* * ** * * * * *
1399 ACCGAGGGTTGCGGGTGCACATGCTACGCTCGAGCATGAGCTGGTGCCACATTTTTTTTCGCCTG
516 ATCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGCCGG
** * * ** * **
1464 GGGCACCATCGTCGGAGCATCACCAGAG-ACCTTGACCGGCTACATTGAGGTTCCAACGATTGGG
581 GGGCACCATCACCGGAGCATCATCGGAGAACC-TGACCGGCGGCATTGGGGTTCCGGCGATT---
* * * * *
1528 GGAGCGGGGGGGGGGCGTTCGCACATGATGTACGATGGGTGCTGGTACTTGGACCTTATATTGGC
642 --A-------GGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGC
* * * * *
1593 CCCATATCCCTCATCAAACCTTGAGAACTCACACCCCCTTACAGTGCATTTGAAATTTTACAGGT
698 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
1658 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT
763 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT
* *
1723 GTACACTTCGAGTTTTTAGCTGAAGTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
828 GTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCAC
* * * * *
1783 GTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAAATCTCGAACCGTAAAAA
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAA
** * * * * *
1848 GTTTCAAAAATTATAAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACATTAAGGATTAA
66 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
*
1913 GGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
* * * *
1978 CCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCAACCCGTCTCTCTAGTCGGCGTAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGT
** * * *
2043 GCCCGCCCGCCTACTCGTTTCGTCGATTGGCTTAGGCATATGTAGTTCATTCCCAGTCTAAGATC
261 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
2108 AGACCAGACCAAGGGTTACGGTAGCACGATCGACAGTACGTAAGGGGGACCCGATCGATCCTCGG
326 AGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGACCCGATCGATCCTCGG
* * * * * *
2173 CTTGCGCATCCTGCCTCTCTGTCCGACTGAGCGCCCGTACTCTCATTTCGTGGGTTGACTTAGGC
391 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
** * * *
2238 ATACAAAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCTAGTGTAAGATCAGACTAGACCG
456 ATACGGAGTTCATTCCCAGTCTAAGCATAC-AAGTTCATTCCCAGTGTAAGATCAGACTAGATCG
* * * *
2303 AGGGTTACGGGTGCACATGGTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTTTTTTGCTC-GAG
520 AGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCA-TTTTTTTTCGC-CGGGG
** * * *
2367 GCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGTATTGGGGTTCTGACGATTAGGGGG
583 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTAGGGGG
*
2432 TGTGCGCACATGATGTGCGGTGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
648 TGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
2497 AAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGCAGCT
713 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
** *
2562 ATTAAAGTGTCTGAAATGGGGACACCATTTTCAAATAGTCACAAAATCCTGTACACTTCGAGTTT
778 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* * * * * *
2627 TTAGCTTAATTATTTTACGCACGCCAACAAAAATACAAGGATCAA
843 TTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCAC
* * *
2672 GTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAACTTTTTAAAAGATCCCAAACCGTAAAAA
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAA
* *
2737 GTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
66 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
* * * *
2802 GGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATTGCAAAACTATGAAGATATG
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
* * * * *
2867 CCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCACCTCTCTGGCTGGCATAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGT
* * * *
2932 GCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTTTAAGATC
261 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * ** * *
2997 AAACC-GAATCAAGGGTTATGGTAGCAAGATCGGTAGCACGTAGGGGGGACTCGGTCGATCCTCG
326 AGACCAG-ACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGACCCGATCGATCCTCG
* * * * * *
3061 GTTTGCGCATCCTGCCCCTCTGGCCGACTGTGCACCCACACGCTCGTTTCGTGGGTTGACTTGGG
390 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * **
3126 CATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTGTAAGATCAGACCGGATC
455 CATACGGAGTTCATTCCCAGTCTAAGCATACA-AGTTCATTCCCAGTGTAAGATCAGACTAGATC
* * * *
3191 AAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTACTGGAGTCGCA-TTTTTTTCACCGGGGG
519 GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGCCGGGGG
* * * * *
3255 CACCATCACCGGAACGTCATCGGAGAACATGACCGGTGGCATTGGGGTTCCGATCGATCCTCAGC
584 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-GCGAT--T-AG-
*** * * * * * * * * * * ** *
3320 TTACGTATCCTGCCCCT-CTG-GCCTGTTGAACGCCCGCACGCTCATTTCGAG-TGTTGACT-TA
644 -GGGGTGTGC-GCACATGATGTG-C-GATGGATG-CTG---G-T-ACTT-G-GCCCTT-A-TATT
*** * * * ** ** ** * **
3381 GGCATACAGAGTTCATTCC-CAGTCTAAGCATACG-GAGTTCATTCCCAGTGT-AAGATCAGACT
695 GGC---C--CCCT-ATCCCTCA-TC-AAACCT-CGAGAACTCACACCCCCT-TAAAGAGCA-TTT
* * * * * **
3443 -AGA---T-CGAGGGTTGCAG---GT-GCACATGT--TGGGCTCGGGCATGTGCTGGTACCGCAT
749 GAGATTTTAC-AGGTTTGCTGCCAGTAGC-CAT-TAAAGTG-TCTGAAATG-G--GG-A---CA-
* *** * * * *
3497 TTTTTTTCACCCGGGGCACCATCACCGGAGCATCGCTGGAGAACCTGACCGACAGCATTCGGGTT
802 CTTTTTTCA-AATGGTCA-CA--A----A--ATC-CTGTA-CA-CT--TCG--AG--TT----TT
* ****** * ** ** * ** **
3562 TCGAC-G-A-TTAGGGGGGCGAGGGGGTGTGCGCACATGACGTGCGGTGGATGCTG
844 TAG-CTGAATTTTTTTATGC-A-------TGC-CAAAAAAAATAC-AAGGAT-CAC
* * * *** * ** ** ** * * * **
3615 GTACTTGGCCCTTA-TATT-GGCCCCCTA-TCC--CTCATCAAA-CCTCGAGAACTCACACCCCC
1 GT-C-T--ACC-AAGT-TTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCA-AACC
* * * *** * **** **
3674 TTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGCAGCCATTAA--AGT-GT-TTGAAATGG
59 GTAAAAAG--TTTCA-AAAAT-C--G-TGAAAAATAG-A---A--AACGAGTCGTCTTGCCAT--
* * * * ** * *
3735 GGACACTATTTTCAAATG--GTCATAAAATCCTGTACACTTCGAGTTTTTAGCTTAATTGTTTTG
109 -GA-A--A-CTTCACATGAAGGC-T-TAA----G-GGAC--C-A--TTGTA--TGAA----TTT-
* * * *** ** * * **
3798 CACATA-CCAACAAAAAT-ACA-AGG-AT--CAAGTCTACCAAG-TGTGGGGCCAAAACTGCTTC
150 -ACA-AGCC-ATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGT---GCCTAAAC-CCACC
** *** *** *** * **** ** *** ** *** * ****
3856 TGAAAAAATTTTTAAAAAATCC-C-AAAT-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
208 T---ACCA-CCCT-ATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCG-GCGTAGT-GCCCG
** * ** * ** **** ** * * * ** *
3918 CGAGTCATCTTGCCAT-GAAACTTCACATGAAGGCTTAAGG-GACCATT----GTATAA-ATTTA
266 CCCGCCCGCTCG-TTTCGTCGGTTGGC-T-TAGGCATACGGAGTTCATTCCCAGTCTAAGA--T-
* ** * * * * * * ** ******
3976 CA-AGCCATAAAAATGGCATTGGCACGGCAAAACTATGAAGATGTGCCTA-AACCCACCTACCAC
325 CAGA-CCAGACCAA-GG-GTT-G--CGG--TAGC-A-G--GAT-CGAC-AGCACGTAGGGGGGAC
* * * * * * * ** *
4039 CCTATCGATCCACGGCTTGGGCATCCCGCCTCTCTAGCTGGCACAATGCCCGCCCGCCCGCTCGT
376 CCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGG--C--TGAGCGCCCGCACGCTCGT
* * * * * * ** *
4104 TTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGATCAAAATGAGGGTT-
437 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--CATA-CAAGTTCA---TTC
* * * * * * ** * * * **
4168 GCGGTAGCAAGATCGACAGCACATAGGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGTCCC
496 CCAGT-GTAAGAT---CAG-AC-TA-----GATCGAG--GGT-TACGG-GTGCACATGCTG-GGC
* **** * * * ** *
4233 TCTGGTCGACTGTGC-GCCCACACACTCATTTCATGGGTT-GACTTGGG---CAT-A-TGGAGTT
545 TC-GGGC-A-TGTGCTGGTGTCGCA-T--TTT--T--TTTCGCCGGGGGCACCATCACCGGAG--
** * * *** * * ** * * * *
4291 CATTACCAGTCTAAGCAAACAGAGTTCATTC-CCAGTGTAAGAT-CGGACCGAATCGAGGGTTAC
598 CA-T--CA-TCGGAG-AACCTGA---CCGGCGGCATTG-GGGTTCCGG--CGATTAG-GGGGT--
* * * * * * * * * * ** *****
4354 GGGTGCACATGCTG-G-GCTCGG--GCAT-GTGCTGGAGTCGTATTTTTTTTCACCGGGGGCACC
649 GTGCGCACATGATGTGCGAT-GGATGC-TGGTACTTG-GCCCT-TATATTGGC-CCCCTATC-CC
* * * * ** * *
4414 ATCGTCGGAGCATCGTCAGAGAACTGAC-CGGTGGCATT--AG-G-GTTCTGACGATTGGTGGGG
708 -TCATC--A--AACCTC-GAGAACTCACAC---CCCCTTAAAGAGCATT-TGA-GATT--T----
* * * * * ** * * * ** *
4474 CGTGCGGGGTGTGC-GCACATGATGTGCGATGGATGCTGGTACTTGGTGCTTATATTGGCCCCCT
756 --TAC-AGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GT-C----TG---AAATGGGGACACT
** *** * * * **
4538 ATCCCTCATCAAACCTCGAGAACTCAC-ACCGCCT-TAAAGAGCATTTGAGATTTTA-C--AGGT
804 -T---TTTTCAAA--T-G-G---TCACAAAATCCTGT--ACA-C-TTCGAGTTTTTAGCTGAATT
** * ** * *
4598 TTGCTA-CCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CAC
854 TTTTTATGCA-T-GCCAAAAAAAAT-AC---AA---GGATCAC
* * ** * *
4638 TTTTTTCAA--AT-GGTCACAAAA-TCCTGTACACTTTGAGTTTTTAGTTAAATATTTTTGTGCA
1 GTCTACCAAGTTTGGGGC-CAAAACTCCT-T---C--TGA------A---AAA-A--TTT-T---
* * * * * *
4699 TGCCAACAAAAT-ACAAGGATCACATATACCAAGTTTGGGGCCAAAACTCTTTCTGGAAAAATTG
43 T---AA-AAAATCCCAA--A-C-CGTA-A-AAAGTTT-----CAAAAATC---GT-GAAAAATAG
* * * *
4763 AAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGAATGAATTTGCAA
89 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
4828 GCCATAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
154 GCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * ** * * * * * *
4893 CGATCGACGGCTTGCACATCTTGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCCGCTCTTTTTGT
219 CGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGT
* ** ***
4958 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTGCGGTA
284 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTA
* * * * * *
5023 GTAGGATCGACAGCACATAGGGGGGACGCAACCGATCC-CAGGTTTGCGCATCCTGCCCCTCTGG
349 GCAGGATCGACAGCACGTAGGGGGGACCCGATCGATCCTC-GGCTTGCGCATCCTGCCCCTCTGG
** * * *
5087 ACC-GCTGAGCGCCTACACGCTCGTTTCATGGGTTGAGTTAGGCATACGCAGTTCATTCCCAGTC
413 -CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
5151 TAAGCATACAGAGTTCATTCCCAGTGTAAGATCTGAC-CGATCGAGGGCTGCGAGTGCACATGCT
477 TAAGCATACA-AGTTCATTCCCAGTGTAAGATCAGACTAGATCGAGGGTTACGGGTGCACATGCT
* * * * ** *
5215 AGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCCGGGCACCATCACCGGAGCATC-GCT
541 GGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGCCGGGGGCACCATCACCGGAGCATCATC-
* * ** * *
5279 GGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATGGGGGGCGGGGGGTGTGCGTACACGATGT
605 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGAT------TAGGGGGTGTGCGCACATGATGT
* * * * * *
5344 GCGATGGGTGCTGGTACATGTCCCTTATGTTGGCCCCATATCCCTCATCAAACCTTGAGAACTCA
664 GCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5409 CACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
729 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5474 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
794 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
5539 GTGCATTCCAAAAAAAATACAAGGATCAT
859 ATGCATGCCAAAAAAAATACAAGGATCAC
* * * * * *
5568 GTCTACCAGGTTTGGTGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAG
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAA
* * *
5633 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCAGGAAACTTCACATTAAGGCTTAA
66 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
5698 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
* * * *
5763 CCTAAACCCACCTACCACCCTTTTGATCCACGGCTTGCGCATCCCGTCTCTCTAACCGGCGTAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGT
* * * *
5828 GCCTGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
261 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** *
5893 AGACCAGACCGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGTGGGGACCCGATCGA-CCTCGG
326 AGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGACCCGATCGATCCTCGG
* * * * * * *
5957 TTTACGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGTTCATTTCGAGTGTTGACTTAGGC
391 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * *
6022 ATACAGAGTTAATTCCCAGTCTAGGCATACGAAGGTCATTCCTAGTGTAAGATCAGACTAGATCG
456 ATACGGAGTTCATTCCCAGTCTAAGCATAC-AAGTTCATTCCCAGTGTAAGATCAGACTAGATCG
* * * * *
6087 AGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTCCTGGTGCCGTATTTTTTTTCACTC-GGGG
520 AGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGC-CGGGGG
* * * * *
6151 CACCATCGCCGGAGCATCGTTGGAGAACCAGACCGGCGGTATTGGGGTT-CGGCGATTAGGGGGG
584 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTA------
* *
6215 CGGGGGGTGTGCGGACATGATGTGCGGTGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
643 --GGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
6280 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCC
706 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
6345 AGCAGCCATTAAAGTGTCTGAAATGGGGACA-TTATTTTCAAATGGTCACAAAATCTTGTACACT
771 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTT-TTTTCAAATGGTCACAAAATCCTGTACACT
* ** * *
6409 TCGAGTTTTTAGCTTAATTTTTTTGCGCATGCCAAAAAAAATACGAGGATCAA
835 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCAC
* * * *
6462 GTCTACCAAGTGTGGGACCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCGAAATCGTAAAAA
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAA
* *
6527 GTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
66 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
* * * * *
6592 GGGACCATTGTATAAATTTACAAGCCATAAAAGTGGCATGGGCATGGCAAAACTATGAAGAAGTG
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
* * * *
6657 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGGGTATCCCGCCTCTCTAGCTGGCATAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGT
* * * * * *
6722 GCCCGCCCGCCCGCTCATTTCATCGGTTAGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATT
261 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * ** *
6787 AGACCAAATCAAAGGTTACGGTAGCAAGATCGGCAGGACACAGGGGGGGACCCGACCGATCC-CT
326 AGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTA-GGGGGGACCCGATCGATCCTC-
** *
6851 GGCTTGCGCATCCTGCCCCTCTGGCCGGCT-ATGCGCCCGCACATTCGTTTCGTGGGTTGACTTG
389 GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * ** *
6915 GGCATATGGAGTTCATTCCCAGTCTAAGCATAGAGAGTTCATTCCCAGTGTAAGATTGGA-TCGG
453 GGCATACGGAGTTCATTCCCAGTCTAAGCATACA-AGTTCATTCCCAGTGTAAGATCAGACT-AG
* * * *
6979 ATCGAGGGTTACGAGTGCACATGCTGGGCTCGAGCATGTGCTGGAGT--CATATTTTTTTCACCG
516 ATCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCAT-TTTTTTTCGCCG
* * *
7042 GGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATTGGT
580 GGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA-T--T
* ****
7107 GGGGCGTGTGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTCATGCTTATATTGGCCC
642 ------AG-GGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCC
*
7172 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
700 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
7237 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTTACAAAATCCTGT
765 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* **
7301 ACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGTAAAAAAAAAATACAAGGATCAC
830 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG-CCAAAAAAAATACAAGGATCAC
* *
7360 GTCTACCATGTTTGGGGCCAAAACT-CTTGCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAA
1 GTCTACCAAGTTTGGGGCCAAAACTCCTT-CTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAA
* * * * *
7424 AGCTTCAAAAATCATGAAAAATATAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTGA
65 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
* * * *
7489 AAGGACCATTGAATGAATTTGCAAGCAATAAAAATGGCATTGGCATGGCAAAAATATGAAG-TCG
130 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGAT-G
* * * * *
7553 TGCCTAAACCCACCTACCACCTTATCGATCCACGACTTGCGCATCACGCCTCTCTGGTCGGCGTA
194 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTA
* **
7618 GTGCCCGCCCGCCTGCTCGTTTTATCGG-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
259 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** *** * * * * * *
7682 TTGGACCAGATTGAGGGTTGCGATAGCAGGATCAATAGCACATAGGGGGGACCCGACCGATCCCC
324 TCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGACCCGATCGATCCTC
* * ** * *
7747 AGCTTGTGCATCCTGCCCCTCTGAACGGTTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAG
389 GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
7812 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTGGAT
454 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-AAGTTCATTCCCAGTGTAAGATCAGACTAGAT
** * * * * *
7877 CGAGGGTTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTAGTGCCACATTTTTTTT-GCCTGGG
518 CGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGCCGGGG
* * * *
7941 GCACCATCACCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGGCGATGGGGGAA
583 GCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGAT-----TA
* * * *
8006 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATGTTGGTCCCCTATCC
643 -GGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
** * *
8071 CTCATCAAACCTTTAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
707 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
8136 GTAGCCAGTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
772 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* *
8201 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATTACAAGGATCAC
837 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCAC
* * *
8252 GTCTACC-AGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCGAACCATAAAAA
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAA
* * * * * * * * *
8316 GTTTTATAAATCGTGAAAAACAAAAAACAAGTCATCTTGCCAGGAAACTTCACATTAAGGCTTAG
66 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
8381 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
* * *
8446 CCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGGCTCTCTAGCCGACGTAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGT
*
8511 ----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
261 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
8572 AGACCAGACCAAGGGTTGTGGTAGCAGGATTGGCAGCACGTAGGGGGGACCCGATCGATCCTCGG
326 AGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGACCCGATCGATCCTCGG
* * * *
8637 CTTGCGCATCCTACCCCTCTACGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
391 CTTGCGCATCCTGCCCCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * *
8702 CATACAGAGTTCATTCCTAGTCTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTAGACC
455 CATACGGAGTTCATTCCCAGTCTAAGCATAC-AAGTTCATTCCCAGTGTAAGATCAGACTAGATC
* * * *
8767 GAGGGTTACGAGTGCACATGCTGGGCTCGGGCATGTGCTAGTGTCGTATTTTTTTTCGCCCGGGG
519 GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGCCGGGGG
** * * * * * *
8832 CACCATCGTCGGAGCGTCACCGGAGAACCTGACCGACGGTATTGGGGTTCTGGTGATTAGGGGGT
584 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTA------
*
8897 GGGGGGTGTGTGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
643 -GGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
8962 CTCATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
707 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
9027 GTAGCCATTAAAGTGTCCGGAATGGGGACACTTTTTTCAAATGATCAAAAAATCCTGTACACTTC
772 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* * * *
9092 CAGTTTTTAGTTCAATTTTTTTACGCATGCCAAAAAAAATACAAGGATCAC
837 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCAC
* * *
9143 GTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTTAAAAAATCCCAAGCCATAAAAA
1 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAA
9208 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
66 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
* * * *
9273 GGGACCATTGTATAAATTTACAAGCCATAAAAATAGCATTGGCGTGGCAAAACTATGAAGATGTG
131 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
* * *
9338 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGCCTCTCTGGCTGGCGTAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGT
* * * * * *
9403 GCCCTCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAGACGGAGGTCATTCCTAGTCTAAGAAC
261 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** * * * *
9468 AGATCAAACCGAGGGTTGTGACAGCAAGATCGGCAGCACATAGGGGGGACCC-AACTGATCCTCG
326 AGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGACCCGATC-GATCCTCG
* * * * * *
9532 GCTTACGCATCCTGCCCCTCTAGTCGGCTGTGCGCCCGCACGCTCGTTTCGTGGGTTTACTTGGG
390 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * **
9597 CATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTCCATTCCCAGTGTAAGATCGGACCGGATC
455 CATACGGAGTTCATTCCCAGTCTAAGCATACA-AGTTCATTCCCAGTGTAAGATCAGACTAGATC
* * * * ** * *
9662 GAGGGTTACGGGTGCATATGCTGGGTTCGGGCATGTGTTGGAGTCATAATTTTTTTCACCGGGGG
519 GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGCCGGGGG
* * * ** *
9727 CACCATTACCGGAGCATCGTCGGAGAACCTGACTGGCGGTGTTGGGGTTCCGGCGATTGGTGGGG
584 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTAG-GGGG
** * *
9792 CATGCGCACATGATGTGCGATGGGTGCCGGTAC
648 TGTGCGCACATGATGTGCGATGGATGCTGGTAC
9825 ATTTTTCAAA
Statistics
Matches: 7010, Mismatches: 1427, Indels: 1001
0.74 0.15 0.11
Matches are distributed among these distances:
876 6 0.00
877 59 0.01
879 290 0.04
880 142 0.02
881 3 0.00
883 1 0.00
885 1 0.00
886 2 0.00
887 74 0.01
888 112 0.02
889 893 0.13
890 61 0.01
891 482 0.07
892 517 0.07
893 436 0.06
894 558 0.08
895 275 0.04
896 509 0.07
897 141 0.02
898 420 0.06
899 120 0.02
900 305 0.04
901 63 0.01
902 308 0.04
903 14 0.00
904 5 0.00
905 3 0.00
906 11 0.00
907 9 0.00
908 10 0.00
909 21 0.00
910 6 0.00
911 6 0.00
912 3 0.00
913 2 0.00
914 1 0.00
915 4 0.00
917 1 0.00
918 3 0.00
919 1 0.00
921 4 0.00
922 4 0.00
923 1 0.00
924 2 0.00
926 2 0.00
927 3 0.00
928 2 0.00
929 4 0.00
930 8 0.00
932 12 0.00
933 18 0.00
934 6 0.00
935 10 0.00
936 14 0.00
937 3 0.00
938 1 0.00
939 1 0.00
940 3 0.00
941 5 0.00
942 10 0.00
943 10 0.00
944 14 0.00
945 2 0.00
946 15 0.00
947 10 0.00
948 3 0.00
949 2 0.00
950 1 0.00
951 5 0.00
952 1 0.00
953 5 0.00
954 3 0.00
955 5 0.00
956 8 0.00
957 4 0.00
958 3 0.00
959 10 0.00
960 14 0.00
964 1 0.00
965 2 0.00
966 4 0.00
967 1 0.00
968 16 0.00
969 8 0.00
970 6 0.00
971 1 0.00
972 6 0.00
973 10 0.00
974 18 0.00
975 12 0.00
976 26 0.00
977 19 0.00
978 25 0.00
979 17 0.00
980 15 0.00
981 22 0.00
982 16 0.00
983 18 0.00
984 5 0.00
985 4 0.00
986 3 0.00
987 10 0.00
988 3 0.00
989 1 0.00
991 8 0.00
992 36 0.01
993 1 0.00
994 1 0.00
996 51 0.01
998 8 0.00
999 4 0.00
1000 2 0.00
1001 8 0.00
1002 8 0.00
1003 3 0.00
1004 5 0.00
1005 8 0.00
1007 51 0.01
1009 1 0.00
1010 2 0.00
1011 40 0.01
1012 4 0.00
1013 2 0.00
1014 7 0.00
1015 12 0.00
1016 12 0.00
1017 14 0.00
1018 20 0.00
1019 19 0.00
1020 18 0.00
1021 18 0.00
1022 22 0.00
1023 17 0.00
1024 20 0.00
1025 24 0.00
1026 15 0.00
1027 22 0.00
1028 8 0.00
1029 17 0.00
1030 11 0.00
1031 10 0.00
1033 4 0.00
1034 2 0.00
1035 4 0.00
1036 2 0.00
1037 3 0.00
1038 10 0.00
1039 7 0.00
1040 4 0.00
1043 13 0.00
1044 4 0.00
1045 8 0.00
1046 8 0.00
1047 5 0.00
1048 11 0.00
1049 5 0.00
1050 7 0.00
1051 3 0.00
1052 5 0.00
1053 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCCCAAACCGTAAAAA
GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGT
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGGACCCGATCGATCCTCGG
CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACAAGTTCATTCCCAGTGTAAGATCAGACTAGATCGA
GGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCGCCGGGGGCA
CCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTAGGGGGTGT
GCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCAC
Found at i:3418 original size:26 final size:26
Alignment explanation
Indices: 3382--3434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3372 GTTGACTTAG
3382 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
3408 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3434 G
1 G
3435 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5158 original size:26 final size:26
Alignment explanation
Indices: 5128--5180 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5118 GTTGAGTTAG
5128 GCATAC-GCAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
*
5154 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5180 G
1 G
5181 ATCTGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:7848 original size:26 final size:26
Alignment explanation
Indices: 7812--7864 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
7802 GTTGACTTAG
*
7812 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
7838 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
7864 G
1 G
7865 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:8903 original size:891 final size:889
Alignment explanation
Indices: 4754--9826 Score: 6646
Period size: 894 Copynumber: 5.7 Consensus size: 889
4744 ACTCTTTCTG
* * * *
4754 GAAAAATTGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGAATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
* *
4819 AATTTGCAAGCCATAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
66 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * ** * * *
4884 CCACCCTATCGATCGACGGCTTGCACATCTTGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCCGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTG--C-CC-GCCCGC
* ** * ** **
4949 TCTTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGG
192 TCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * *
5014 GTTGCGGTAGTAGGATCGACAGCACATAGGGGGGACGCAACCGATCC-CAGGTTTGCGCATCCTG
257 GTTGCGGTAGCAGGATCGGCAGCACATAGGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCTG
* ** * * *
5078 CCCCTCTGGACCGCTGAGCGCCTACACGCTCGTTTCATGGGTTGAGTTAGGCATACGCAGTTCAT
321 CCCCTCTGGACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
5143 TCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCTGAC-CGATCGAGGGCTGCGAGTG
386 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTGGATCGAGGGTTACGAGTG
* * ** ** *
5207 CACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCCGGGCACCATCACCGGAG
451 CACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCACCGGAG
* * * * *
5272 CATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATGGGGGGCGGGGGGTGTGCGTAC
516 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGTGGGGGGTGTGCGCAC
* * * * *
5337 ACGATGTGCGATGGGTGCTGGTACATGTCCCTTATGTTGGCCCCATATCCCTCATCAAACCTTGA
581 ATGATGTGCGATGGATGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
*
5402 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTG
646 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
5467 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
711 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
5532 TTTTTTTGTGCATTCCAAAAAAAATACAAGGATCATGTCTACCAGGTTTGGTGCCAAAAATCCTT
776 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA-GTTTGGGGCCAAAACTCCTT
* *
5597 CTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCGT
840 CTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * *
5647 GAAAAATAGAAAACGAGTTGTCTTGCCAGGAAACTTCACATTAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
5712 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
66 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
5777 CCACCCTTTTGATCCACGGCTTGCGCATCCCGTCTCTCTAACCGGCGTAGTGCCTGCCCGCCCGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTA--G--TGCCCGCCCGC
*
5842 TCATTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
192 TCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * * * * *
5907 GTTGTGGCAGTAGGATCGGTAGCACGTAGTGGGGACCCGATCGA-CCTCGGTTTACGCATCCTGC
257 GTTGCGGTAGCAGGATCGGCAGCACATAGGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGC
* * * * * * * *
5971 CCCTCTGGCCGGCTAAGCGCCCGCACGTTCATTTCGAGTGTTGACTTAGGCATACAGAGTTAATT
322 CCCTCTGGACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * * *
6036 CCCAGTCTAGGCATACGAAGGTCATTCCTAGTGTAAGATCAGACTAGATCGAGGGTTGCGGGTGC
387 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTGGATCGAGGGTTACGAGTGC
* * * *
6101 ACATGCTGGGCTCGGGCATGTCCTGGTGCCGTATTTTTTTTCACTCGGGGCACCATCGCCGGAGC
452 ACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCACCGGAGC
** * * * * *
6166 ATCGTTGGAGAACCAGACCGGCGGTATTGGGGTT-CGGCGATTAGGGGGGCGGGGGGTGTGCGGA
517 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATT--GGGGGTGGGGGGTGTGCGCA
* * *
6230 CATGATGTGCGGTGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
580 CATGATGTGCGATGGATGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
* *
6295 AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGT
645 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
6360 GTCTGAAATGGGGACA-TTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTT
710 GTCTGAAATGGGGACACTT-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
6424 AATTTTTTTGCGCATGCCAAAAAAAATACGAGGATCAAGTCTACCAAGTGTGGGACCAAAACTCC
774 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC-AGTTTGGGGCCAAAACTCC
* *
6489 TTCTGAAAAAATTTTTAAAAAAT-CCGAAATCGTAAAAAGTTTCGAAAATCGT
838 TTCTGAAAAAATTTTTAAAAAATCCCG-AACCGTAAAAAGTTTCAAAAATCGT
* *
6541 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATA
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
* * * *
6606 AATTTACAAGCCATAAAAGTGGCATGGGCATGGCAAAACTATGAAGAAGTGCCTAAACCCACCTA
66 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
6671 CCACCCTATCGATCCACGGCTTGGGTATCCCGCCTCTCTAGCTGGCATAGTGCCCGCCCGCCCGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGT----GCCCGCCCGC
* * * * * * * *
6736 TCATTTCATCGGTTAGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTAGACCAAATCAAAG
192 TCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * *
6801 GTTACGGTAGCAAGATCGGCAGGACACAGGGGGGGACCCGACCGATCC-CTGGCTTGCGCATCCT
257 GTTGCGGTAGCAGGATCGGCAGCACATA-GGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCT
* ** * *
6865 GCCCCTCTGGCCGGCT-ATGCGCCCGCACATTCGTTTCGTGGGTTGACTTGGGCATATGGAGTTC
320 GCCCCTCTGGACGGCTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
**
6929 ATTCCCAGTCTAAGCATA-GAGAGTTCATTCCCAGTGTAAGATTGGA-TCGGATCGAGGGTTACG
384 ATTCCCAGTCTAAGCATACG-GAGTTCATTCCCAGTGTAAGATCAGACT-GGATCGAGGGTTACG
* * * *
6992 AGTGCACATGCTGGGCTCGAGCATGTGCTGGAGTCATA-TTTTTTTCACCGGGGGCACCATCACC
447 AGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCACC
* * *
7056 GGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATTGGTGGGGCGTGTGGGGT
512 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGA-T--TGGGG-GTGGGGGGT
* ****
7121 GTGCGCACATGATGTGCGATGGATGCTGGTACTTCATGCTTATATTGGCCCCCTATCCCTCATCA
573 GTGCGCACATGATGTGCGATGGATGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCA
** *
7186 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCA
638 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
7251 TTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTTACAAAATCCTGTACACTTCGAGTTTT
703 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * **
7315 TAGCTGAATGTTTTTATGCATGTAAAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCA
768 TAGCTGAATTTTTTTGTGCATG-CCAAAAAAAATACAAGGATCACGTCTACCA-GTTTGGGGCCA
* * * *
7380 AAACT-CTTGCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGCTTCAAAAATCAT
831 AAACTCCTT-CTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * * * *
7439 GAAAAATATAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTGAAAGGACCATTGAATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
* *
7504 AATTTGCAAGCAATAAAAATGGCATTGGCATGGCAAAAATATGAAG-TCGTGCCTAAACCCACCT
66 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGAT-GTGCCTAAACCCACCT
* * * * *
7568 ACCACCTTATCGATCCACGACTTGCGCATCACGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTG
130 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCG--C-CC-G
* * ** **
7633 CTCGTTTTATCGG-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAG
191 CTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* *** * * *
7697 GGTTGCGATAGCAGGATCAATAGCACATAGGGGGGACCCGACCGATCCCCAGCTTGTGCATCCTG
256 GGTTGCGGTAGCAGGATCGGCAGCACATAGGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTG
* * * *
7762 CCCCTCTGAACGGTTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
321 CCCCTCTGGACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
** *
7827 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTGGATCGAGGGTTGTGGGTG
386 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTGGATCGAGGGTTACGAGTG
* * * * *
7892 CACATGCTGGGCTCAGGCATGTGCTAGTGCCACATTTTTTTT-GCCTGGGGCACCATCACCGGAG
451 CACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCACCGGAG
* * *
7956 CATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGGCGA-TGGGGGAAGGGGGGTGTGCGCA
516 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGG-TGGGGGGTGTGCGCA
* * * *
8020 CATGATGTGCGATGGGTGCTGGTACATGGCCCTTATGTTGGTCCCCTATCCCTCATCAAACCTTT
580 CATGATGTGCGATGGATGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
* * *
8085 AGAACTCACACCCCATTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAGTAAAGT
645 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
8150 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
710 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
8215 ATTTTTTTGTGCATGCCAAAAAAATTACAAGGATCACGTCTACCAGTTTGGGGCTAAAACTCCTT
775 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGTTTGGGGCCAAAACTCCTT
* * *
8280 CTGAAAAAATTTTTAAAAAATCCCGAACCATAAAAAGTTTTATAAATCGT
840 CTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * * * * * *
8330 GAAAAACAAAAAACAAGTCATCTTGCCAGGAAACTTCACATTAAGGCTTAGGGGACCATTGTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
8395 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
66 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
8460 CCACCCTATCGATCCACAGCTTGCGCATCCCGGCTCTCTAGCCGACGTAGTGCCCGCCCGCTCGT
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCCGCTCAT
* * *
8525 TTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTG
196 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * *
8590 TGGTAGCAGGATTGGCAGCACGTAGGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTACCCCT
261 CGGTAGCAGGATCGGCAGCACATAGGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCT
* * * * *
8655 CTACGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCT
326 CT-GGACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
8720 AGTCTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTAGACCGAGGGTTACGAGTGCACA
390 AGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTGGATCGAGGGTTACGAGTGCACA
* * * * ** *
8785 TGCTGGGCTCGGGCATGTGCTAGTGTCGTATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCGTC
455 TGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCACCGGAGCATC
* * * * *
8850 ACCGGAGAACCTGACCGACGGTATTGGGGTTCTGGTGATTAGGGGGTGGGGGGTGTGTGCACATG
520 GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATT-GGGGGTGGGGGGTGTGCGCACATG
*
8915 ATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
584 ATGTGCGATGGATGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
* *
8980 CTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCC
649 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * * * *
9045 GGAATGGGGACACTTTTTTCAAATGATCAAAAAATCCTGTACACTTCCAGTTTTTAGTTCAATTT
714 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
** *
9110 TTTTACGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTG
779 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC-AGTTTGGGGCCAAAACTCCTTCTG
*
9175 AAAAAATTTTTAAAAAATCCC-AAGCCATAAAAAGTTTCAAAAATCGT
843 AAAAAATTTTTAAAAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCGT
*
9222 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATA
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
* * *
9287 AATTTACAAGCCATAAAAATAGCATTGGCGTGGCAAAACTATGAAGATGTGCCTAAACCCACCTA
66 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * *
9352 CCACCCTATCGATCCACGGCTTGCGTATCCCGCCTCTCTGGCTGGCGTAGTGCCCTCCCGCCCGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTG----CCCGCCCGC
* * * * * * *
9417 TCATTTCGTCGGTTGGCTTAGGCAGACGGAGGTCATTCCTAGTCTAAGAACAGATCAAACCGAGG
192 TCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* ** * * * *
9482 GTTGTGACAGCAAGATCGGCAGCACATAGGGGGGACCCAACTGATCCTCGGCTTACGCATCCTGC
257 GTTGCGGTAGCAGGATCGGCAGCACATAGGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGC
* * * * * *
9547 CCCTCTAGTCGGCTGTGCGCCCGCACGCTCGTTTCGTGGGTTTACTTGGGCATATGGAGTTCATT
322 CCCTCTGGACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
9612 CCCAGTCTAAGCATACAGAGTCCATTCCCAGTGTAAGATCGGACCGGATCGAGGGTTACGGGTGC
387 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTGGATCGAGGGTTACGAGTGC
* * * * * * * *
9677 ATATGCTGGGTTCGGGCATGTGTTGGAGTCATAATTTTTTTCACCGGGGGCACCATTACCGGAGC
452 ACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCACCGGAGC
* * * ** **
9742 ATCGTCGGAGAACCTGACTGGCGGTGTTGGGGTTCCGGCGATT---GGT--GGGGCATGCGCACA
517 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGTGGGGGGTGTGCGCACA
* *
9802 TGATGTGCGATGGGTGCCGGTACAT
582 TGATGTGCGATGGATGCTGGTACAT
9827 TTTTCAAATG
Statistics
Matches: 3658, Mismatches: 466, Indels: 116
0.86 0.11 0.03
Matches are distributed among these distances:
887 12 0.00
888 107 0.03
889 180 0.05
890 57 0.02
891 460 0.13
892 530 0.14
893 425 0.12
894 550 0.15
895 274 0.07
896 516 0.14
897 143 0.04
898 401 0.11
899 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCCGCTCAT
TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
CGGTAGCAGGATCGGCAGCACATAGGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCT
CTGGACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTGGATCGAGGGTTACGAGTGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCACCGGAGCATCG
CCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGTGGGGGGTGTGCGCACATGAT
GTGCGATGGATGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGTTTGGGGCCAAAACTCCTTCTGAAA
AAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
Found at i:10367 original size:26 final size:26
Alignment explanation
Indices: 10337--10389 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10327 GTTGACTTAG
*
10337 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
* *
10363 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCACAGTCTAA
10389 G
1 G
10390 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:11260 original size:26 final size:26
Alignment explanation
Indices: 11224--11276 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11214 GTTGGCTTAG
*
11224 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
11250 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11276 G
1 G
11277 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11685 original size:26 final size:26
Alignment explanation
Indices: 11649--11703 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 26
11639 ACGTTTATCA
11649 AGTCTAAGCATAC-AGAGTTCATTCCC
1 AGTCTAAGCATACGA-AGTTCATTCCC
11675 AGTCTAAGCATACGAAGTTCATTCCC
1 AGTCTAAGCATACGAAGTTCATTCCC
11701 AGT
1 AGT
11704 GCAAGATTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
AGTCTAAGCATACGAAGTTCATTCCC
Found at i:12590 original size:26 final size:26
Alignment explanation
Indices: 12560--12609 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12550 GACTTAGGCT
12560 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
12586 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12610 ATTGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:14339 original size:26 final size:26
Alignment explanation
Indices: 14309--14361 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14299 GTTGACTTAT
14309 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
14335 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
14361 G
1 G
14362 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16959 original size:887 final size:884
Alignment explanation
Indices: 15244--18449 Score: 3894
Period size: 887 Copynumber: 3.6 Consensus size: 884
15234 TTCATTCCCA
* * * * * ** *
15244 GGTGCACATGCTGGGCTTGGGCTTATGCTGGTGCCACATTTTTTTTTTGCTTGGGGCACCATCGC
1 GGTGCACATGATGGGCTCGGGCATGTGCTGGTG-CACA-TTTTTTTTCGCCCGGGGCACCATCGT
** * ** ** * * * *** * *
15309 CGGAGCATCATCGGAGAACCTGATTGGTTGCATTAGGGTTTCGGCGATTGGGGTGGTGTGCACAC
64 CGGAGCATCGCCGAAGAACCTGACCGGCGGCATT-GGGATTGGGGGGCGGGGGGGGTGTGCGCAC
* * *
15374 ATGATGTGCAATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGA
128 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
15439 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
193 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * *
15504 TCCGAAATGGGGACACTTTTTTCAAATGATCAAAAAATCCTGTACACTTCCAGTTTTTAGTTGAA
258 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
*
15569 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAAATCCT
323 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACCAAGTTTGGGGCCAAAACTCCT
* * * ** *
15633 TTTGAAAAAATTTAAAAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
388 TCTGAAAAAATTT-AAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * * * **
15698 CGAGTCGTCTTGCCATGGAACTTCACTTGAAGGCTTAAGGGATCATTGTATGAATTTCCAAGTGA
452 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
15763 TAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGAT
517 TAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * *
15828 CCACGGCTTGCACATCCCACCTCTCTGGCGACGTAGTGCCCGCCCGCCAGCTTGTTTCATCGGTT
582 CCACGGCTTGCGCATCCCGCCTCTCTGGCCAGGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
15893 GGCTTAGGCATACGGAGTTAATTCCTAGTCTAAGATCGGACCGGACCAAGGGTTGCAACAACAGG
647 GGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGCAACAGCAAG
* ** * ** * *
15958 ATCGGCAGTGCATAAGGGGGGACCCGAGTGATCCCC-GACTTACGCATCCTGGCCCTCTGGCCGG
712 ATTGGCAGCACGTAAGGGGGGACCCGACCGATCCCCGGA-TTATGCATCCTGCCCCTCTGGCCGG
* * * * *
16022 CTGAGCGCCTGCACGTTCGTTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGC
776 CTGAGCGCCCGCATGCTCGTTTGATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
16087 ATACGGAGTTCATTCCAAGTGTATGATCGAACCAGACCGAGGGTTATG
841 ATACGGAGTTCATTCC-A-TGTA-GATCG-ACCAGACCGAGGGTTGTG
* * * *
16135 GGTGCACATGCTGGGGTCGGGCATCTACTGGTGTCACATTTTTTTTCGCCCGGGGCACCATCGTC
1 GGTGCACATGATGGGCTCGGGCATGTGCTGGTG-CACATTTTTTTTCGCCCGGGGCACCATCGTC
* * *
16200 GGAGCATCGCCGAAGAACTTGACCGGCGGCATTGGGATTGGGGGGCGGGGGGGATGGGCGCACAT
65 GGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGATTGGGGGGCGGGGGGGGTGTGCGCACAT
* * * *
16265 GATGTGTGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAGA
130 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
16330 ACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTG-C
195 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
16393 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATT
260 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
16458 TTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCT-ACTAAGTTTGGGTCCAAAACTGCTTT
325 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACCAAGTTTGGGGCCAAAACTCCTTC
* *
16522 TGAAAAAATTTAAAAAAAATCCCAAATCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGA
390 TGAAAAAATTTAAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
16587 GTCGTCTT-CCAATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
455 GTCGTCTTGCC-ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
16651 AAAATGGCATTGGCTTGGAAAAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCC
519 AAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * * *
16716 ACGGGTTGTGCATCCTGCCTCTCTGGCCTGGTAGTGCCTGCCCGCCCGCTCATTTCGTCGGTCGA
584 ACGGCTTGCGCATCCCGCCTCTCTGGCCAGGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * **
16781 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCATTAGCAAGAT
649 CTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGCAACAGCAAGAT
*
16846 TGGCAGCACGTAAGGAGGGGACCCGACCGATCCCCGGATTGTGCATCCTGCCCCTCTGGCCGGCT
714 TGGCAGCACGTAAGG-GGGGACCCGACCGATCCCCGGATTATGCATCCTGCCCCTCTGGCCGGCT
* * * *
16911 GAGCGCCCACATGCTGGTTTGATGGGTTAACTTAGGCATACGGAGTTCATTCCCCGTCTAAGCAT
778 GAGCGCCCGCATGCTCGTTTGATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* *
16976 ACGGAGTTCATTCCCTATCTAAGGTCGGACCAGACCGAGGGTTGTG
843 ACGGAGTTCATT-CC-ATGT-AGATC-GACCAGACCGAGGGTTGTG
* *
17022 GGTGCACATGTTGGGCTCGGGCATGTGCTGGTGCTACATTTTTTTTCGCCCGAGGCACCATCGTC
1 GGTGCACATGATGGGCTCGGGCATGTGCTGGTGC-ACATTTTTTTTCGCCCGGGGCACCATCGTC
* * * * ** * *
17087 GGAGCATCGCCAAAAAACCTGATCGACGGTGTTGGGGTTCCGGTGATTGGGGGGTGGGGGGTGTG
65 GGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGATT--GG-G---GGGCGG-GGGGGGTGTG
*
17152 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAAC
123 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
17217 CTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
188 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
17282 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAG
253 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* *
17347 CCG-ATTATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAA-CATGTTTGGGGCCAAA
318 CTGAATT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACCAAGTTTGGGGCCAAA
* ** *
17410 ACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCATAAAAAGTTTCAAAAAT-AGTAAAAAAT
382 ACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCA-TGAAAAAT
* * *
17474 AGAAAACGAG-CGTCTTGCCATGAAACTTCTCATGAAGGCTTAAGGGACCATGGTATGAATTTAT
446 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
17538 AAGCCATAAAAATGGCAATGGCATGGAGGAAATATGAAGATTTGCCTAAACCCACCTACCACCGT
511 AAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
17603 ATCGATCCATGACTTACGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTC
576 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAG-GTAGTGCCCGCCCGCCCGCTCGTTTC
* * * *
17668 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTGGATCGAACCAAGGGTTACAA
640 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGCAA
* * ** * * * *
17733 CAGCAAGATTGGCAGCACGCAGGGGGGGACCCGGTCGAACCTCGGCTTTTGCATCCTGCCCCTCT
705 CAGCAAGATTGGCAGCACGTAAGGGGGGACCCGACCGATCCCCGGATTATGCATCCTGCCCCTCT
* * ** * *
17798 GGCCGGTTGCGCGATCGCATGCTCATTTCG-TGGGTTGACTTAGGCATATGGAGTTCATTCCCAG
770 GGCCGGCTGAGCGCCCGCATGCTCGTTT-GATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
17862 --T--G--TA---AG---A-T-C--G-A-ATCG---A-ACCGAGGGTTGGG
834 TCTAAGCATACGGAGTTCATTCCATGTAGATCGACCAGACCGAGGGTTGTG
* * * * *
17891 GGTGCACATGATGGGCTCGGGCATGTGTTGGTGCCGCATTTTTTTTCACCCAGGGCACCATCGCC
1 GGTGCACATGATGGGCTCGGGCATGTGCTGGTG-CACATTTTTTTTCGCCCGGGGCACCATCGTC
** * *
17956 AAAGCATCGCCGGAGAACCTGACAGGCGGCATTGGGGTTCTAGCGATTGGGGGAGCGGGGGAGGG
65 GGAGCATCGCCGAAGAACCTGACCGGCGGCATT---G-----G-GATTGGGGG-GC--GGG-GGG
*
18021 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTA
117 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
18086 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATCTGAGATTTTACAAGTTTGCTGCCAGTAG
182 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
18151 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
247 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
* * * * * *
18216 TTTTAGCT-ACATTTTTGTGTGCATGCCAACAAAAATGCAAGGATCACAT-TGACCAGGTTTGGG
312 TTTTAGCTGA-ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACCAAGTTTGGG
* * * *
18279 GCCAAAACTCCTTCTGAAAAAATTTTTAAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCACG
376 GCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATG
* *
18344 AAAAAT--------A--------G--A--AAACTTCACATGAAGGCTTAAGGGAGCATTCTATGA
440 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* *
18389 ATTTACAAGCCATAAAAATGGTATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCAC
505 ATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCAC
18450 TCGTTTCATT
Statistics
Matches: 2024, Mismatches: 250, Indels: 116
0.85 0.10 0.05
Matches are distributed among these distances:
857 87 0.04
859 1 0.00
861 1 0.00
868 1 0.00
869 91 0.04
870 2 0.00
872 3 0.00
873 2 0.00
874 5 0.00
875 263 0.13
876 47 0.02
877 2 0.00
878 3 0.00
880 1 0.00
882 1 0.00
883 1 0.00
885 2 0.00
886 283 0.14
887 349 0.17
888 39 0.02
889 113 0.06
890 49 0.02
891 33 0.02
893 6 0.00
894 104 0.05
895 259 0.13
896 275 0.14
897 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (884 bp):
GGTGCACATGATGGGCTCGGGCATGTGCTGGTGCACATTTTTTTTCGCCCGGGGCACCATCGTCG
GAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGATTGGGGGGCGGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACCAAGTTTGGGGCCAAAACTCCTTCT
GAAAAAATTTAAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGCCTCTCTGGCCAGGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGCAACAGCAAGATTG
GCAGCACGTAAGGGGGGACCCGACCGATCCCCGGATTATGCATCCTGCCCCTCTGGCCGGCTGAG
CGCCCGCATGCTCGTTTGATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCATGTAGATCGACCAGACCGAGGGTTGTG
Found at i:16996 original size:26 final size:26
Alignment explanation
Indices: 16946--16998 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16936 GTTAACTTAG
*
16946 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCCATCTAA
*
16972 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCCATCTAA
16998 G
1 G
16999 GTCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCCATCTAA
Found at i:18660 original size:26 final size:26
Alignment explanation
Indices: 18629--18681 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18619 GTTGACGTAG
18629 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
18655 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18681 G
1 G
18682 ATTGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20180 original size:26 final size:26
Alignment explanation
Indices: 20144--20196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20134 GTTGACTTTG
*
20144 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20170 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20196 G
1 G
20197 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21206 original size:26 final size:26
Alignment explanation
Indices: 21169--21222 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
21159 CGTTGACTTT
* *
21169 AGCATACGGAGTTCATTCCTAGTCTA
1 AGCATACAGAGTTCATTCCCAGTCTA
*
21195 AGCATACAGAGTTCATTCCCAGTGTA
1 AGCATACAGAGTTCATTCCCAGTCTA
21221 AG
1 AG
21223 ATTGAACTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCCAGTCTA
Found at i:22102 original size:26 final size:26
Alignment explanation
Indices: 22066--22118 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22056 GTTGACTTAG
22066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
22092 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22118 G
1 G
22119 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.