Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168369.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22129
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Found at i:775 original size:25 final size:26
Alignment explanation
Indices: 741--790 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
731 TTAACTTAGG
741 CATACGGAGTTCATT-CCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
766 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
791 GATCAGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:4961 original size:897 final size:880
Alignment explanation
Indices: 11--6145 Score: 6542
Period size: 897 Copynumber: 6.9 Consensus size: 880
1 GGGGCATCGC
** * * *
11 CGGAGAACCTGACCGGTGGCATTGGGGTTCC-AGCGAT-CAGGGGGGCCCG-GGGGGGTGTACAC
1 CGGAGAACCTGACCGGCAGCATTGGGGTTCCGA-TGATGC-GGGGGGCCGGCGGGGGGTGTGCAC
*
73 ACATGATGTGCGATGGGTGCTGGTACTTGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
64 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
138 GAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTATAG
129 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * *
203 TGTCTAAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACTCTTTGAGTTTTTAGCTG
194 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
268 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCC
259 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * *
333 CTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT-GGTGAAAAATAGAAAA
324 TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAGTGAAAAATAGAAAA
* * *
397 TGAGTCATCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
462 TAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCT-TCGAT
454 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGAT
* ** * * * * * * *
526 TCGTGGCTTGCGCATCCCGTCTTTTTGGCCAGCGTAGTGCCTGCCCGCTCGCTCGCCCGATAGTT
518 CCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGC-C-TCCGCTCGTT
* ** ** * ** **
591 TCCTCGGTCAGCTTAGGCATACGGAGTTCATTCCTGGTCTAAGATCAAACTGGACTAAGGGTTAC
581 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC
* ** * * * *
656 GGTAGCAGGATCGACAGCACGCAGA-GGGGACCCGGCCCTCTGGCTGGCTGAGCGC--CCGCACG
646 GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCGATC--CCCGGCT-TGCGCATCCGC-CC
** * **** ** * * * * * * *
718 CTC-GTTTC-G-TGGGTTAACTTAGGCATACG----GAGTTCATTCCAGTCTAAC-CATACGGAG
707 CTCTG-GCCGGCTGAGCGCCCGCACGC-T-CGTTTCGTGGTGATT--AGGCTTACGCATACGAAG
* * * * *
775 TTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCACATGCTCGGCTCGGGCATG
767 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* ** * *
840 TGCTGGTGTCGCATTTTTCTTCACCGGTGCACCATCGTCGGAGCATC-G
832 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
** * *
888 CTGGAGAACCTGACCGGC-GACATCAGGGTTCCGATGAT-CGGGGGG-C--CGGGGGATGTGCGC
1 C-GGAGAACCTGACCGGCAG-CATTGGGGTTCCGATGATGCGGGGGGCCGGCGGGGGGTGTGCAC
* * * *
948 ACATGATATGTGATGGGTGCTGGAAC-TGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTC
64 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
1012 GAGAA-TCACA-CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAG
129 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
1075 TGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
194 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * * *
1139 AATTGTTTTCTGCATGCCAACAAAAAA-ACAAGGATCATGTCTAACAAGTTTGGAGCCAAAAAAT
259 AATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACT
*
1203 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAAGTTTCAAAAATCA-TGAAAAATAAA
322 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGC-AAAAAGTTTCAAAAATCAGTGAAAAATAGA
* * * *
1267 AAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCCTAAGGGACCATTGTGTGAATTTACAAG
386 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
1332 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCAAAACACATCTACCACCCTATCG
451 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
1397 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCTGCACGTTC
516 ATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTG-CCCGCCCGCCCGCCT-C-CGCTC
** *
1462 GTTTCGTCGACTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-----CAGATCGAGGGT
578 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
** * * * * ** ** * *
1522 TATAGCAGCAGGATTGGTAGCATGCAGAATGGGACCCAACTGATCCCCCGGTTTACCGCATCCCG
643 TACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGC-GAT-CCCCGGCTT-GCGCAT-CCG
* * *
1587 CCCCT-TGGCCGGCTGAGCGCTCGTAACGCTTGTTTCGTCGGTTGACTTAGGCATGCGGAGTTCA
704 CCCCTCTGGCCGGCTGAGCGCCCG-CACGCTCGTTTCGT-GG-TGA-TT----A----G-G--C-
** **
1651 TTCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGCATTGCGGT
753 TT---A--C---GCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGAC
* * * * *
1715 AGCATATGCTGGGCTCGAGCATTTGCTGGTGCCCACATTTTTCTTCATCGGGGCACCATCGTCGG
809 AGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* *
1780 AGCATTAC
873 AGCATCAT
* *
1788 CGGAGAACCTGACCGGCCGCATTGGGGTTCCGATGAT-CGGGGGGCC-G-GGGGTGTGTGCACAC
1 CGGAGAACCTGACCGGCAGCATTGGGGTTCCGATGATGCGGGGGGCCGGCGGGGGGTGTGCACAC
* *
1850 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGA
66 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * * * *
1915 -AACTCACACCCGCTCAAAGAGCATTTGAGATTTTACAAG-TTGCTGCTAGTAACCGTTAAAGTG
131 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
1978 TCTGAAATGGGGAACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTTGAGTTTTTAGCTGA
196 TCTGAAATGGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
2042 ATTTTTTTTGTGCGTACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
260 A-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* *
2107 TTTCGAAAAAA-TTTAAAAAATCTCGAATCGCAAAAAGTTTCAAAATATC-GTGAAAAATAGAAA
324 TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA-ATCAGTGAAAAATAGAAA
* * *
2170 ACGAGTCATCTTGCTATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATG-ATTTACAAGCC
388 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
2234 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
453 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
2299 CCACGGCTT-CTGCATCCCGTCTCCTTGGCTGGCGTAGTGCCCACCCGCCCG--T-CACTCGTTT
518 CCACGGCTTGC-GCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCGCTCGTTT
* * *
2360 CATCGGTT-GCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACAGAGGGTTAC
582 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTAC
* * * ** * * * *
2423 AGTAGTAGGATCAGCAGCACATAGAGTGGGACCCGGTTGATCCCCGACTTGCGTATCCCGCCCCT
646 GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG-CGATCCCCGGCTTGCGCAT-CCGCCCCT
* *
2488 CTGG-CGGCTTAGCGCCCGCACGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTTTCATTTCC
709 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG--TGA-TTAGG----C-----TT-A----C
* * * * *
2552 AGTCTAAGAATACAAAGTTCATTCCCAATCTAAGATTGGGACCAGACCGAGGGTTGC-ATCAGCA
757 -G-C-----ATACGAAGTTCATTCCCAGTCTAAGA-TCGGATCGGACCGAGGGTTGCGA-CAGCA
* * * *
2616 CATGTTGGGCTTGGGCATGTACTGGTCCCGCCGCATTTTTCTTCGTCGGCGCA-CA--GTC---G
813 CATGCTGGGCTCGGGCATGTGCTGGT---GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
2675 -----T
875 CATCAT
* * **
2676 CGGAGAACCTGACTGGCCGCATTTGGGGTTCCGGCGAT-C-GGGGG-C--CGGGGGGTGTGCACA
1 CGGAGAACCTGACCGGCAGCA-TTGGGGTTCCGATGATGCGGGGGGCCGGCGGGGGGTGTGCACA
* * ** *
2736 CAAGATGTGTGATGACTGCTGGTACATGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCG
65 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * *
2800 AGAACTCACACCCCCTTAAAGTGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGT
130 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
2865 GTCTGAAATGGGGATAGTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTTGCTG
195 GTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
2930 AATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCGAAACTCC
259 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
** *
2995 TTCCGAAAAAATTTTAAAAAAATCTCGAATTGCAAAAAGTTTCAAAAATCA-TGAGAAAA-AAAA
324 TTCCGAAAAAATTTT-AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAGTGA-AAAATAGAA
* *
3058 AACGAGTCGTCTTGCCATTAAAACTTCACGTG-AGGCTTAAGGAACCATTGTATGAATTTACAAG
387 AACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * **
3122 CCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTGGTAAT
451 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CCT-AT
*
3187 CGATCCACGGCTTGCGCATCCCGTCT-TTCTGGCCTGCGTAGTGCCCGCCCGCCCG--T----TC
514 CGATCCACGGCTTGCGCATCCCGTCTCTT-TGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCGCTC
* * *
3245 GTTCCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
578 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * *
3310 TACGGTAGCAAGATCGGCAGCACACAGAGAGGGACCCGGCTAATCCACGGCTTGCGCATCCTGCC
643 TACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGC-GATCCCCGGCTTGCGCATCC-GCC
* * * *
3375 CCTTTGGCCGGCTGAGCGCCCGCCCGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
706 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GG-TGA-TTAGGCTTAC---G--CA-T-
* * * *
3440 CCAGTCGAAGCATACAGAGTTCATTCCCAATCTAAGATCGGATTGGATCGAGGGTTGTGACAGCA
761 --A--C---G-----A-AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCA
* *
3505 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTTGGAGCAT
813 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
3570 CAT
878 CAT
** * *
3573 CGGAGAACCTGACCGGTGGCGTTGGGGTTCCGGTGATTG-GGGGGGCCGG-GGGGGGTGTGCACA
1 CGGAGAACCTGACCGGCAGCATTGGGGTTCCGATGA-TGCGGGGGGCCGGCGGGGGGTGTGCACA
* * *
3636 AATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCG
65 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
3701 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
130 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
3766 GTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGA
195 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
3831 ATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGG-CAAAAATCTT
260 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * **
3895 TTCGAAAAAATTTTAAAAAATC-CTGAACTGTAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAA
325 TCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCAGTGAAAAATAGAAAA
* * *
3958 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATGGTATGAATTTAGAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
4023 TAAAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATC
454 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * *
4088 CACGGCTTGCACATCCCGTCTCTTTCGTCGACGTAGTGCCCACCCGCCCGTCCGTCCGCTGGTTT
519 CACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-TCCGCTCGTTT
* * * ** *
4153 TGTCGGTTAGCTTAGGCATACGGCGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCG
582 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG
* * * ** * * *
4218 GTAGCAGGATTGGCAACACGTAGAGGGGGATTCGATCGATCCCTGGCTTGCACATGCCGCCCCTC
647 GTAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-GCGATCCCCGGCTTGCGCAT-CCGCCCCTC
* * * * * *
4283 TAGCCGGTTGAGCACTCGTACTCTCGTTTCGTGG-G-TT-GGCTTACGCATACGAAGTTCATTCC
710 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTGATTAGGCTTACGCATACGAAGTTCATTCC
* * * * *
4345 CAGTCTAAGATCGGATCGGACCGAGTGCTGCGGCAGCACATGCTGGGCTCAGGCTTGTGCTGGTG
775 CAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
** * * ** * *
4410 TTGCATTTTTCTTC-ACTGGGTCACCATCACCGGACCATCGT
840 CCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCAT
* *
4451 CGGAGAACCTGACCGGCATCATTGGGGTTCTGATGATCGGGGGCCCGGGGGGCCGAAGGGGCCGG
1 CGGAGAACCTGACCGGCAGCATTGGGGTTCCGATGAT-----G--CGGGGGGCC-----GG-CGG
* * *
4516 GGGGTGTCGCGCACATAATGCTGCGATGGGGTGCTGGTACTTGGCCCTT-TATTGGCCCCAT-TC
53 GGGGTGT-GCACACATGATG-TGCGAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-
* * * *
4579 CCCTCATCAAACCCTCGAGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTATAAGTTTGCTG
114 CCCTCATCAAA-CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
4644 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
178 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * **
4709 TTCGCGTTTTTAGCTGAATTTTTTTATGCATGTAAAAAAAAAATACAAGGATCACGTCTACCAAG
243 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAAAAAAAATACAAGGATCACGTCTACCAAG
* **
4774 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAAT
307 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
*
4839 CAG-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTG
372 CAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
4903 TATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCAC
437 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
*
4968 CTACCACCGTATCGATCCACGGCTTGCGCATCCCGTCT-TTCTGGCCGGCGTAGT----GCCCGC
502 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTT-TGGCCGGCGTAGTGCCCGCCCGC
** * *
5028 CCG-C-CCGCTCGTTTCGTCAATTGGCTTAGGCATATGGAGTTCATCCCCAGTCTAAGATCAGAC
566 CCGCCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
5091 CAGACCGAGGGTTACAGTAGCAGGATCGGCAGCATGCAGAGAGGGACCCGGCTAATCCCCGGCTT
631 CAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGC-GATCCCCGGCTT
* * * *
5156 GTGCATCCTGCCCCTTTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
695 GCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GG-TGA-TTAGG----
* *
5221 CGAAGTTCATTCCCAGTCGAAGCATGCAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGG
752 C----TT-A--CGCA-T---A-C--G-A-AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGG
*
5286 GTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
801 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* *
5351 TCGTCGGAGAATCAC
866 TCGTCGGAGCATCAT
* * ** * *
5366 CGGAGAACCTGACCGGCGGCGTTGGGGTTCCGGCGAT-CGGGGGGGCCAGC--GGGGTGTGCGCA
1 CGGAGAACCTGACCGGCAGCATTGGGGTTCCGATGATGC-GGGGGGCCGGCGGGGGGTGTGCACA
* *
5428 AATGAGGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
65 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
5493 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
130 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
5558 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGTTGA
195 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
5623 ATATTTCTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
260 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * * *
5688 TCCAAAAAAATGTAAAAAAATCCCGAACCGCAAAAGGTTTCGAAAATC-CTGAAAAATAGAAAAC
325 TCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAGTGAAAAATAGAAAAC
* * *
5752 GAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTATATGAATTTACAAGCCAT
390 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
5817 AAAAATGGCGTTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCC
455 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
5882 ACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGTTCGTTTC
520 ACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-TCCGCTCGTTTC
* * * *
5947 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGA
583 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGG
* * * * **
6012 CAGTAGGATCGGTATCACGCAGA-GGGGACCCGGCCGATCATCGGCTTGCGCATCCTGCCCCTCT
648 TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG-CGATCCCCGGCTTGCGCATCC-GCCCCTCT
* * * *
6076 GGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGG-G-TT-GACTTAGGCATACGGAGTTCATTCCC
711 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTGATTAGGCTTACGCATACGAAGTTCATTCCC
6138 AGTCTAAG
776 AGTCTAAG
6146 CATACGGAGT
Statistics
Matches: 4443, Mismatches: 578, Indels: 474
0.81 0.11 0.09
Matches are distributed among these distances:
869 28 0.01
870 15 0.00
871 98 0.02
872 109 0.02
873 192 0.04
874 99 0.02
875 34 0.01
876 3 0.00
877 31 0.01
878 156 0.04
879 8 0.00
880 2 0.00
881 5 0.00
882 3 0.00
884 1 0.00
885 10 0.00
886 48 0.01
887 89 0.02
888 150 0.03
889 288 0.06
890 242 0.05
891 42 0.01
892 68 0.02
893 57 0.01
894 45 0.01
895 180 0.04
896 403 0.09
897 467 0.11
898 284 0.06
899 139 0.03
900 319 0.07
901 248 0.06
902 86 0.02
903 128 0.03
904 217 0.05
905 3 0.00
906 3 0.00
907 2 0.00
908 8 0.00
910 1 0.00
911 1 0.00
913 1 0.00
914 1 0.00
915 128 0.03
916 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (880 bp):
CGGAGAACCTGACCGGCAGCATTGGGGTTCCGATGATGCGGGGGGCCGGCGGGGGGTGTGCACAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
CCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAG
CAGGATCGGCAGCACGCAGAGGGGGACCCGGCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGTGATTAGGCTTACGCATACGAAGTTCATTCCCAGTCT
AAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
Found at i:5868 original size:896 final size:908
Alignment explanation
Indices: 4327--6170 Score: 2565
Period size: 896 Copynumber: 2.0 Consensus size: 908
4317 GTTGGCTTAC
* *
4327 GCATAC-GAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGTGCTGCGGCAGCACATGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGCTGCGACAGCACATGCTGG
* ** * * **
4391 GCTCAGGCTTGTGCTGGTGTTGCATTTTTCTTCACTGGGTCACCATCACCGGACCATCGTCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGGACAATCACCGGAG
* * *
4456 AACCTGACCGGCATCATTGGGGTTCTGATGATCGGGGGCCCGGGGGGCCGAAGGGGCCGGGGGGT
130 AACCTGACCGGCAGCATTGGGGTTCCGACGATC---GG--CGGGGGGCC-AA--GGCC-GGGGGT
*
4521 GTCGCGCACATAATGCTGCGATGGGGTGCTGGTACTTGGCCCTTTATTGGCCCCATTCCCCTCAT
186 GTCGCGCAAATAATGCTGCGATGGGGTGCTGGTACTTGGCCCTTTATTGGCCCCATTCCCCTCAT
* *
4586 CAAACCCTCGAGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGTAG
251 CAAACCCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
* * **
4651 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGT
316 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAAT
* *
4716 TTTTAGCTGAATTTTTTTATGCATGTAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
381 TTTTAGCTGAATATTTCTATGCATGTAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
4781 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCAGGAAA
446 CCAAAACTCCTTCCAAAAAAATGTAAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCAGGAAA
* * *
4846 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATT
511 AATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATT
* *
4911 TACAAGCCATAAAAATGGAATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
576 TACAAGCCATAAAAATGGAATTGGCACGCAAAAATATGAAGATGTGCCTAAACCAACCTACCACC
* *
4976 GTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCG-CCCGCCCG-C-TC
641 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCGTC
*
5038 GTTTCGTCAATTGGCTTAGGCATATGGAGTTCATCCCCAGTCTAAGATCAGACCAGACCGAGGGT
706 GTTTCGTCAATTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * *
5103 TAC-AGTAGCAGGATCGGCAGCATGCAGAGAGGGACCCGGCTAATCCCCGGCTTGTGCATCCTGC
771 TACGA-CAGCAGGATCGGCAGCACGCAGAG-GGGACCCGGCCAATCACCGGCTTGCGCATCCTGC
* *
5167 CCCTTTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
834 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
5232 CCCAGTCGAA
899 CCCAGTCGAA
* * * *
5242 GCATGCAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGCTGCGACAGCACATGCTGGG
* * ** *
5307 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCATCGTCGGAGAATCACCGGAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCACCGGACAATCACCGGAG
* * *
5371 AACCTGACCGGCGGCGTTGGGGTTCCGGCGATC-G-GGGGGGCC-A-G-C-GGGGTGT-GCGCAA
130 AACCTGACCGGCAGCATTGGGGTTCCGACGATCGGCGGGGGGCCAAGGCCGGGGGTGTCGCGCAA
* * *
5429 ATGA-GGTGCGAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAA-CC
195 ATAATGCTGCGATGGGGTGCTGGTACTTGGCCCTT-TATTGGCCCCAT-TCCCCTCATCAAACCC
* *
5490 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
258 TCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
*
5555 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGT
323 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGC
* ** *
5620 TGAATATTTCTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
388 TGAATATTTCTATGCATGTAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * **
5684 TCCTTCCAAAAAAATGTAAAAAAATCCCGAACCGCAAAAGGTTTCGAAAATCCTGAAAAATAGAA
453 TCCTTCCAAAAAAATGTAAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCAGGAAAAATAGAA
*
5749 AACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTATATGAATTTACAAGC
518 AACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGC
** * *
5814 CATAAAAATGGCGTTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGA
583 CATAAAAATGGAATTGGCACGCAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGA
*
5879 TCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGTTCGT
648 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCCGCCCG-CCG-TCGT
** * * * *
5944 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
708 TTCGTCAATTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAGACCGAGGGTTA
* * * * *
6009 CGACAGTAGGATCGGTATCACGCAGAGGGGACCCGGCCGATCATCGGCTTGCGCATCCTGCCCCT
773 CGACAGCAGGATCGGCAGCACGCAGAGGGGACCCGGCCAATCACCGGCTTGCGCATCCTGCCCCT
* * *
6074 CTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
838 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
*
6139 GTCTAA
903 GTCGAA
*
6145 GCATACGGAGTTCATT-CCAGGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
6171 TATGTGATGG
Statistics
Matches: 825, Mismatches: 90, Indels: 40
0.86 0.09 0.04
Matches are distributed among these distances:
896 260 0.32
897 159 0.19
898 29 0.04
899 9 0.01
900 15 0.02
902 5 0.01
903 119 0.14
904 82 0.10
905 1 0.00
906 1 0.00
908 8 0.01
911 1 0.00
914 1 0.00
915 134 0.16
916 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (908 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGCTGCGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGGACAATCACCGGAGA
ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGCGGGGGGCCAAGGCCGGGGGTGTCGCGCAAA
TAATGCTGCGATGGGGTGCTGGTACTTGGCCCTTTATTGGCCCCATTCCCCTCATCAAACCCTCG
AGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGCTGA
ATATTTCTATGCATGTAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCCAAAAAAATGTAAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCAGGAAAAATAGAAAAC
GAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAT
AAAAATGGAATTGGCACGCAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCGTCGTTTCGTCAA
TTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCA
GGATCGGCAGCACGCAGAGGGGACCCGGCCAATCACCGGCTTGCGCATCCTGCCCCTCTGGCCGG
CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCGAA
Found at i:6155 original size:26 final size:26
Alignment explanation
Indices: 6119--6170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6109 GTTGACTTAG
6119 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCAGGTCTAA
6145 GCATACGGAGTTCATTCCAGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
6171 TATGTGATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:6457 original size:26 final size:26
Alignment explanation
Indices: 6428--6477 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6418 AACTCCTTTT
6428 GCAAAAATTTTAAAAAATCTTGAACC
1 GCAAAAATTTTAAAAAATCTTGAACC
* *
6454 GCAAAAATTTTCAAAAATGTTGAA
1 GCAAAAATTTTAAAAAATCTTGAA
6478 AAATCGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (26 bp):
GCAAAAATTTTAAAAAATCTTGAACC
Found at i:6883 original size:26 final size:26
Alignment explanation
Indices: 6853--6903 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
6843 GTTGACTTAG
*
6853 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
* *
6879 GCATACGGACTTCATTCTCAGTCTA
1 GCATACGAACTTCATTCCCAGTCTA
6904 TGATCGGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:8656 original size:26 final size:26
Alignment explanation
Indices: 8620--8672 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8610 GTTGACTTAG
*
8620 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
8646 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
8672 G
1 G
8673 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:8819 original size:26 final size:26
Alignment explanation
Indices: 8783--8835 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8773 GTTGACTTAG
*
8783 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
8809 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
8835 G
1 G
8836 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11057 original size:869 final size:869
Alignment explanation
Indices: 8817--13189 Score: 5539
Period size: 869 Copynumber: 5.0 Consensus size: 869
8807 AAGCATACGG
* * * * ** * * *
8817 AGTTCATTCCCATTCTAAGATCGGACCGGACCGAGAGTTGTGGCAGCACATGCTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCAGCAGCACATGCTAGGCTCGAGCA
* * * * *
8882 TGTGCTGGCACCGCATTTTTCTTCATCGGGGCACCATCGTCG-AGCATCG-TCTGAGAACCTAAC
66 TGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCGCT-TGAGAACCTGAC
*** * * * *
8945 CGGTAGCATTAGGGTTT-CGAAGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGG
130 CGACGGCATTGGGGTTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
9009 TGCTGGTACCTGACCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
9073 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
9138 CTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
9203 CAACAAAAATACAAGGATCACG--TACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTAA
390 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* *
9266 AAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTA
455 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
9331 AACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACGAGCCATAAAAATGGCATTGGCAC
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * *
9396 ACAGAAATATGAAGATGTGCGTAAACTCACCTACCACCCTACCGATCCACGACTTGCGCATCCCG
585 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** * * * * * * *
9461 TCTCTCTAGTTGGCGTAGTGCCTGCCCACCCGCCCCCTTGTTTCATCGGTTGGCTTTGGCAGACG
650 TCTCTCTGGCCGGCATA--G--TGCCCGCCCGCCCGCTCG-TTCGTCGGTTGGCTTAGGCATACG
* ** * * * * *
9526 GAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGTATCGGCAGTATGTA
710 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCAGCAGCACGTA
* * * ** *
9591 G-GGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTATGGTTGGCTGAGCACCCGCACG
775 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
**
9655 CTCGTTTCATGGGTTGACTTAGGCATACGG
840 CTCGTTTCATGGGTTGACTTAGGCATACAA
* *
9685 AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGCACATGCTAGGCTC-AGGC
1 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCAGCAGCACATGCTAGGCTCGA-GC
* * * * **
9749 ATGCGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCC-AGAGCATCACCGGAGAACCTGA
65 ATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGCCGA-AGCATCGCTTGAGAACCTGA
* *
9813 CCGACGGCATTGGGG-TTCCGATGATCGGGGGGGCCGAGGGGTGTCCGCACATGATGTGCGATGG
129 CCGACGGCATTGGGGTTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
9877 GTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
9942 TTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
10007 ACTTTGTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
10072 CCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTA
389 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTA
** *
10137 AAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATG
454 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
10202 AAACTTCACGTGAAGGCTTAAGGGACTATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
10267 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATACATGGCTTGCGCATCCC
584 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
10332 GTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTCGTCGGTTGGCTTAGGCATACGGAGT
649 GTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * ** ** *
10397 TAATTCCCAGTCTAAGATCAGATCGGACCAAATGTTGCGATAGTAGGATCAGCAACACGTAGAGG
714 TCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCAGCAGCACGTAGAGG
* * * * *
10462 GGGACCTGACCGATCCTCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCG
779 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
**
10527 TTTTGTGGGTTGACTTAGGCATACAA
844 TTTCATGGGTTGACTTAGGCATACAA
* * *
10553 ATTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCAGTAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCAGCAGCACATGCTAGGCTCGAGCA
* * *
10618 TGTGCTGGTACCATATTTTTCTTTACCGGGGCACCATCGCCGAAGCATTGCTTGAGAACCTGACC
66 TGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCGCTTGAGAACCTGACC
* *
10683 GGCGGCATTGGGGTTTCGGA-GATCGGGGGGGCCGGTGGGGGTGTGCGCACATGATGTGCGATGG
131 GACGGCATTGGGGTTTCCGATGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGG
* *
10747 TTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
10812 TTAAAGAGCAATTGAGATTTTATAGGTTTGCTG-CAGGAGCCATTAAAGTTTCTGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
10876 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTATGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
10941 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTG
389 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * * * *
11006 AAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTGTTGCCATG
454 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
11071 AAACTTCACGTGAAGGCTTAAGGGACCAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
519 AAACTTCACGTGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
11136 ACGTAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
583 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** ** * * *
11200 CGTCTCTCTGGTGGGTGTAGTGCCCGTCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATAC-GA
648 CGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTC-GTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
11264 GTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCAACAGCACGTAGA
712 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCAGCAGCACGTAGA
* * * * * * * * * *
11329 GCGGGACCCGATCGATCCCCGTCTTACGGATCCCACACCTCTGGCAGACTGAGCGCCCGTACGCT
777 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
*
11394 CGTTTCGTGGGTTGACTTAGGCATA-AA
842 CGTTTCATGGGTTGACTTAGGCATACAA
* *
11421 GAGTTCATTTCCCAGTCTAAGCATACGGAGTTCATTCTAGTCTAAGATCGGACTGGACCAAG-GG
1 -AGTTCA-TTCCCAGTCTAAG-AT-C-G-G---A-TC--G----A-A-CCGA--GG-----GTTG
* * * * *
11485 CTACGACAGCACATGCTAGGCT-GGGCCATGTGCTGGCACCGCATTTTTCTTCACTGTGGCACCA
41 C-A-G-CAGCACATGCTAGGCTCGAG-CATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCA
* * ** * * * *
11549 TCGTCGGAGCATCGCCAGAGAACCTGACCAACGGCATTGGGG-TTCCGACGATCAGGGGGGCCAG
102 TCGCCGAAGCATCGCTTGAGAACCTGACCGACGGCATTGGGGTTTCCGATGATCGGGGGGGCCGG
** * *
11613 GGGAAGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCT
167 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
11678 CATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
232 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
11743 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGA
297 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
11808 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAACT-CAAGGATCACGTCTACCAAGTTTAG
362 GTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTAG
* * *
11872 CGCCAAAACTCCTTCTGAAAAAATTTTGAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
426 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* * *
11937 AAAATAAAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAA
491 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
12002 TTTAC-AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
556 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
12066 CCCTATCTATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGACACAGTGCTCGCCGCCCGCCGGC
621 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG--C-CCGCCCG-C--C
* * * *
12131 TCGCTCGTTTCGTCAGTTGGCTTAGGCATA-GGAGTTCATT-CCAGTCTAAGATCAAACCAAACT
680 -CGCTCG-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* *
12194 GAGGGTT-----A-T-GG--CAGCATG--C-TA-AGGGGGACCCGACCGATCCCCGGCTTGTGCA
743 AAGGGTTGCGGCAGTAGGATCAGCA-GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * *
12246 TCCCGCCCCTCTGGCCGGCTGAGCGCTCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGA
807 TCCCGCCCCTCTGGCCGGCTGAGCGC-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAA
* * * ** *
12310 AGTTCATTCCCATTCTAAAGATCAGATCGGACCGAGGGTTGTGGCAAGCACATGCTTGGCTCGAG
1 AGTTCATTCCCAGTCT-AAGATCGGATCGAACCGAGGGTTGCAGC-AGCACATGCTAGGCTCGAG
* * * *
12375 CATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCG-TCGAAGAACCTG
64 CATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCGCTTG-AGAACCTG
* * * *
12439 ACTGACGGCATTGTGGTTT-CGATGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATG
128 ACCGACGGCATTGGGGTTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
12503 GGTGCTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
12568 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
12633 CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** * * *
12698 GCCAACAAAGTTAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGTGAAAAAATTTT
388 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTT
* * ** * * *
12763 AAAAAAACCTGAACCGTAAAAA-TTTTGAAAATCGTGAAAAACAGAAAACGAGTCATCTTG-CAT
453 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-
* * *
12826 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCACTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
12891 CACATAGAAATATGAAGACGTGCCTAGACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATC
582 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* **
12956 CCGTCTCTCTGGCTGGCATAGT----GCCCGCTTG-T--TTCGTCGGTTGGCTTAGGCATACGGA
647 CCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTCGTCGGTTGGCTTAGGCATACGGA
* * * *
13014 GTTCATTCCCAGTCTAAGATCATATCGGACCAAGGGTTGCGGCAGTAGGATC-GACAGCACGCAG
712 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCAG-CAGCACGTAG
* *
13078 AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
776 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * **
13143 TCGTTCCATGGGTTGACTCATGCATACGG
841 TCGTTTCATGGGTTGACTTAGGCATACAA
*
13172 AGATCA-TCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
13190 CATATGGAGT
Statistics
Matches: 3062, Mismatches: 357, Indels: 180
0.85 0.10 0.05
Matches are distributed among these distances:
849 21 0.01
850 10 0.00
851 24 0.01
852 1 0.00
853 1 0.00
856 2 0.00
857 6 0.00
858 2 0.00
859 2 0.00
860 6 0.00
861 9 0.00
862 39 0.01
863 132 0.04
864 469 0.15
865 5 0.00
866 1 0.00
867 71 0.02
868 325 0.11
869 535 0.17
870 395 0.13
871 2 0.00
872 230 0.08
873 2 0.00
874 1 0.00
877 1 0.00
878 3 0.00
880 3 0.00
881 1 0.00
884 2 0.00
885 1 0.00
886 4 0.00
887 58 0.02
888 43 0.01
889 2 0.00
890 4 0.00
891 1 0.00
892 52 0.02
893 183 0.06
894 243 0.08
895 100 0.03
896 6 0.00
897 1 0.00
899 27 0.01
900 36 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCAGCAGCACATGCTAGGCTCGAGCA
TGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCGCTTGAGAACCTGACC
GACGGCATTGGGGTTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCAGCAGCACGTAGAGGGG
GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCATGGGTTGACTTAGGCATACAA
Found at i:13198 original size:25 final size:26
Alignment explanation
Indices: 13164--13215 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13154 GTTGACTCAT
13164 GCATACGGAGATCA-TCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
* *
13189 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
13215 G
1 G
13216 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:14915 original size:26 final size:26
Alignment explanation
Indices: 14879--14929 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14869 TGAATTAGGT
*
14879 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
14905 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
14930 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16310 original size:368 final size:368
Alignment explanation
Indices: 15633--16343 Score: 1066
Period size: 368 Copynumber: 1.9 Consensus size: 368
15623 AGGGACCCGA
* * * * * * *
15633 CCGATCCCTGGCTTGCGCAACTTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTTGTTTCGTTGG
1 CCGATCCCCGGCTTACGCAACCTACCCCTCTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGG
* * *
15698 TTGACCTAGGCGTACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
66 TTGACCTAGGCATACGAAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
15763 GGACCGGACCGAGGGTTTTCATACCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
131 AGACCAGACCGAGGGTTTGCACACCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
* ** * *
15828 TTGTCGAGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCAGCATTGGGGTTCCGATGA
196 TCGTCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTAACCAGCAGCATTGGGGTTCCGATGA
*
15893 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
261 TCGGGGGCGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
15958 GGCCCCCTATCCCTCATCTTGAGCATCCCGTGTCTCTCGTCGG
326 GGCCCCCTATCCCTCATCTTGAGCATCCCGTGTCTCTCGTCGG
* *
16001 CCGATCCCCGGCTTACGCATCCTACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
1 CCGATCCCCGGCTTACGCAACCTACCCCTCTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGG
* * *
16066 TTGACTTAGGCATAC-AGAGCTCTTTCCCAGTCTAATCATACGGAGTTCATTCCCAGTCTAAGAT
66 TTGACCTAGGCATACGA-AGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * **
16130 CAGACCAGACCGAGGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATTTTTTT
130 CAGACCAGACCGAGGGTTTGC-ACACCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
* * * * *
16194 CTTCGTCGGGGCACCATCACCTGAGCATCGCCAGAGAACCTAACCAGCGGCATTGGGGTTCTGGT
194 CTTCGTCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTAACCAGCAGCATTGGGGTTCCGAT
16259 GATCGGGGGCGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
259 GATCGGGGGCGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
16324 TTGGCCCCCTATCCCTCATC
324 TTGGCCCCCTATCCCTCATC
16344 AAACATCGAG
Statistics
Matches: 305, Mismatches: 36, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
367 4 0.01
368 301 0.99
ACGTcount: A:0.16, C:0.29, G:0.30, T:0.25
Consensus pattern (368 bp):
CCGATCCCCGGCTTACGCAACCTACCCCTCTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGG
TTGACCTAGGCATACGAAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCAGACCGAGGGTTTGCACACCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
TCGTCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTAACCAGCAGCATTGGGGTTCCGATGA
TCGGGGGCGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCTTGAGCATCCCGTGTCTCTCGTCGG
Found at i:16992 original size:26 final size:26
Alignment explanation
Indices: 16963--17015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16953 GTTGACTTAG
* *
16963 GCATACGTAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17015 G
1 G
17016 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17547 original size:26 final size:26
Alignment explanation
Indices: 17517--17569 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17507 GTTGAGTTAC
* *
17517 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17543 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17569 G
1 G
17570 ATTGGAGCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19343 original size:26 final size:26
Alignment explanation
Indices: 19306--19358 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19296 GTTGACTTAG
19306 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
19332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19358 G
1 G
19359 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19815 original size:904 final size:903
Alignment explanation
Indices: 17413--22114 Score: 6855
Period size: 904 Copynumber: 5.2 Consensus size: 903
17403 TTACAATAGT
* ** * * * * * *
17413 AGGATCAACAGCACACAGAGGGAGACCCGATCGATCCCCGGCTTGCGCATCCAGCCCCTTTGGTC
1 AGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
* * * *
17478 GGCTGAGCGCCCGCACGCTCGTTTCATGC--GTTGAGTTACGCATACGGAGTTCATTCCCAGTTT
66 GGCTGAGCGCCCGCACGCTCGTTTC--GCTAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
* * * * * *
17541 AAGCATACGAAGTTCATTCCCAGTCTAAGATTGGAGCAGATCGAAGTTACGGTAGCACATGCTGG
129 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGTTACGGCAGCACATGCTGG
* ** * ** * * *
17606 GCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAG
194 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCATCATCGTCGAAGCATCGCTGGAG
* * * * * * * *
17671 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGGTGTGTGCACATGATG
259 AACATGACAGACAGCATTGGTGTTCCGGCAATCGGGGGGGTCGGAGGGGGTATGCGCACATGATG
* * *
17735 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCTTCAAAACCTCGAGAACT
324 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCAAGAACT
* * *
17799 CACACCCCCTTAAGGGGCATTTGAGATTTTATAGGTTTGCTGGCCAGTAGCCATTAAAGTGTCTG
388 CACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTG
*
17864 AAATGGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
452 AAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
* *
17929 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCGAAAACTCCTTCCG
516 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* ** * * * *
17994 AAAAAAATTTTAAAAAATCCTGAGCCGCAAAAAGTTTCAAAAATTGTAAAAAAATAAAAAACGAG
581 -AAAAAACTTTAAAAAATCCTGAAACGTAAAAAGTTTCAAAAATAGT-GAAAAATAGAAAACGAG
18059 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
644 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
18124 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
709 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATG
* * * * * *
18189 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGC-C--C-GCCC-ACT---TAT-T--TC
774 GCTTGCGCATCCCGCCTCTCTGGCTGACGTAGTGCCCGCTCGTCTGCCCGTCTGCCTTTCTGCTC
* * ** * * *
18243 G--TCG---GTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGATCAGACCGGCAGC
839 GTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGCCGGACCAGCAAC
* * * * * * * *
18303 AGGAT-AGGCAGCATGTAGAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGACCCTTTGGT
1 AGGATCA-GCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGC
* ** * *
18367 CGGCTGAGCGCCCGCATGCTCGTTT-AATGGGTTGTCTTAGGCATAC-AGAGTTCATTCCCAGTC
65 CGGCTGAGCGCCCGCACGCTCGTTTCGCT-AGTTGACTTAGGCATACGA-AGTTCATTCCCAGTC
* * *
18430 TAA-CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGATGCT
128 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA-GGTTACGGCAGCACATGCT
* * * * * * * * * *
18494 AGGCTCGGGCATGTGCTGGTGCCACT-TTTTTCTTCGCCGGGG-ACCATTGACGGAGCATCACCG
192 GGGCTCGAGCATGTGCTGGTGCC-GTATTTTTCTTCACCGGGGCATCATCGTCGAAGCATCGCTG
* * * * * * * * * * * *
18557 GAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGAGG-C-CATGGGGTGTGTGCACATG
256 GAGAACATGACAGACAGCATTGGTGTTCCGGCAATCGGGGGGGTCGGAGGGGGTATGCGCACATG
* * * *
18620 ATGTGCAATGGGTGCTGGTACTTGGCTCTTATATTTGCACCCTATCCCTCATCAAACCTCGAGAA
321 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
* * * * *
18685 CTCAGACCCACTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG-CATTCAAGTGTCT
386 CTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
18749 GAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
451 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
* ** *
18814 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAAATTGGGGCCGAAACTCCTTCCG
516 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
18879 AAAAAACTTTAAAAAATCCCGAAACGTAAAAAGTTTCACAAATAGTGAAAAATAGAAAACGAGTC
581 AAAAAACTTTAAAAAATCCTGAAACGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTC
*
18944 GTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
646 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
19009 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGC
711 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGC
19074 TTGCGCATCCCGCCTCTCTGGCTGACGTAGTGCCCGCTCGTCTGCCCGTCTGCCTTTCTGCTCGT
776 TTGCGCATCCCGCCTCTCTGGCTGACGTAGTGCCCGCTCGTCTGCCCGTCTGCCTTTCTGCTCGT
19139 TTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGCCGGACCAGCAAC
841 TTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGCCGGACCAGCAAC
*
19202 AGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGTATCCTGCCCCTCTGGCC
1 AGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
19267 GGCTGAGCGCCCGCACGCTCGTTTCGCTAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGCTAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
19332 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGATTACGACAGCACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGG-TTACGGCAGCACATGCTGGG
19397 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCATCATCGTCGAAGCATCGCTGGAGA
195 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCATCATCGTCGAAGCATCGCTGGAGA
*
19462 ACATCACAGACAGCATTGGTGTTCCGGCAATCGGGGGGGTCGGAGGGGGTATGCGCACATGATGT
260 ACATGACAGACAGCATTGGTGTTCCGGCAATCGGGGGGGTCGGAGGGGGTATGCGCACATGATGT
19527 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
325 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
19592 CACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
390 CACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
19657 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
455 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
**
19722 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAAATTGGGGCCAAAACTCCTTCCGAAAA
520 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
19787 AACTTTAAAAAATCCTGAAACTTAAAAAGTTTCACAAATAGTGAAAAATAGAAAATGAGTTGTCT
585 AACTTTAAAAAATCCTGAAACGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCT
* *
19852 TGCCAAGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
650 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
19917 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTGC
715 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTGC
19982 GCATCCCGCCTCTCTGGCTGACGTAGTGCCCGCTCGTCTGCCCGTCTGCCTTTCTGCTCGTTTCG
780 GCATCCCGCCTCTCTGGCTGACGTAGTGCCCGCTCGTCTGCCCGTCTGCCTTTCTGCTCGTTTCG
20047 TTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGCCGGACCAGCAAC
845 TTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGCCGGACCAGCAAC
*
20106 AGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGTATCCTGCCCCTCTGGCC
1 AGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
20171 GGCTGAGCGCCCGCACGCTCGTTTCGCTAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGCTAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
20236 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGATTACGACAGCACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGG-TTACGGCAGCACATGCTGGG
20301 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCATCATCGTCGAAGCATCGCTGGAGA
195 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCATCATCGTCGAAGCATCGCTGGAGA
20366 ACATGACAGACAGCATTGGTGTTCCGGCAATCGGGGGGGTCGGAGGGGGTATGCGCACATGATGT
260 ACATGACAGACAGCATTGGTGTTCCGGCAATCGGGGGGGTCGGAGGGGGTATGCGCACATGATGT
20431 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACCTATCCCTCATCAAACCTCAAGAACTC
325 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CCTATCCCTCATCAAACCTCAAGAACTC
20496 ACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
389 ACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * ** * *
20561 ATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGAAGATGAATTTTTT
454 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTT
* * * * * *
20626 TGTGCAAGCCAAAAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAATCTCTTTCTGAAA
519 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * * *
20691 AAA-TTTAGAAAAATCC-GAATCGT-AAAAGTTTTGAAAATCGTTAAAACTAGAAAACGAGTCGT
584 AAACTTTA-AAAAATCCTGAAACGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGT
*
20753 GTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
648 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
20818 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTT
713 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTT
20883 GCGCATCCCGCCTCTCTGGCTGACGTAGTGCCCGCTCGTCTGCCCGTCTGCCTTTCTGCTCGTTT
778 GCGCATCCCGCCTCTCTGGCTGACGTAGTGCCCGCTCGTCTGCCCGTCTGCCTTTCTGCTCGTTT
20948 CGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGCCGGACCAGCAAC
843 CGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGCCGGACCAGCAAC
*
21009 AGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGTATCCTGCCCCTCTGGCC
1 AGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
*
21074 GGCTGAGCGCCCGTACGCTCGTTTCGCTAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGCTAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
21139 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA-GGTTACGGCAGCACATGCTGGG
*
21204 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCATCATCGTCGAAGCATCGCTGGAGA
195 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCATCATCGTCGAAGCATCGCTGGAGA
*
21269 ACATCACAGACAGCATTGGTGTTCCGGCAATCGGGGGGGTCGGAGGGGGTATGCGCACATGATGT
260 ACATGACAGACAGCATTGGTGTTCCGGCAATCGGGGGGGTCGGAGGGGGTATGCGCACATGATGT
21334 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
325 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
21399 CACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
390 CACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
21464 TGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTG-AATTGTTT
455 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT-TTT
*
21528 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGGCCAAAATTCCTTCCGAA
519 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAA
* * * *
21593 AAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTT
583 AAAACTTTAAAAAATCCT-GAAACGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTC
* * * * * *
21656 GACTTGCCATAAAACTTCACGTGCAGGCTAAAGGGACCATTGTATGAATTTACAGGCCAAAAAAA
646 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * *
21721 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
711 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGC
*
21786 TTGCGCATCCCG--TCTCT--CT--CG--GT--ACGC-C--C-GCCCG-CT--C-TT-T--TCG-
776 TTGCGCATCCCGCCTCTCTGGCTGACGTAGTGCCCGCTCGTCTGCCCGTCTGCCTTTCTGCTCGT
* *
21829 -TCG---GTTGGCTTAGGCATACGGAGTTCATTCCCAAGTCTAAGATGA-ACCGATTGAGGGTTT
841 TTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATTAGGCCG---GA------
* * * *
21889 GCGGTAGC
896 CCAGCAAC
* * * * * *
21897 AGGATC-G--GTACGCAGA-GGGGACCCGGCCGATCCCAG-CTTGCGCATCCCGCCCATCTGGCC
1 AGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
* * * *
21957 GGCTGAGCG-CCGCACACTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATT-CCAATCTA
66 GGCTGAGCGCCCGCACGCTCGTTTCGCT-AGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
*
22019 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGTTGCGGCAGCACATGCTGGG
130 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGTTACGGCAGCACATGCTGGG
22084 CTC-AGGCATGTGCTGGTGCCGTATTTTTCTT
195 CTCGA-GCATGTGCTGGTGCCGTATTTTTCTT
22115 TGTCGGCACC
Statistics
Matches: 3525, Mismatches: 230, Indels: 124
0.91 0.06 0.03
Matches are distributed among these distances:
879 33 0.01
880 60 0.02
881 51 0.01
882 44 0.01
883 206 0.06
884 61 0.02
885 116 0.03
886 27 0.01
887 15 0.00
888 113 0.03
889 109 0.03
890 160 0.05
891 8 0.00
892 2 0.00
894 4 0.00
895 3 0.00
896 3 0.00
897 2 0.00
899 164 0.05
900 93 0.03
901 54 0.02
902 189 0.05
903 792 0.22
904 836 0.24
905 380 0.11
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
AGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
GGCTGAGCGCCCGCACGCTCGTTTCGCTAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGTTACGGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCATCATCGTCGAAGCATCGCTGGAGAA
CATGACAGACAGCATTGGTGTTCCGGCAATCGGGGGGGTCGGAGGGGGTATGCGCACATGATGTG
CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ACTTTAAAAAATCCTGAAACGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTGCG
CATCCCGCCTCTCTGGCTGACGTAGTGCCCGCTCGTCTGCCCGTCTGCCTTTCTGCTCGTTTCGT
TAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGCCGGACCAGCAAC
Found at i:20247 original size:26 final size:26
Alignment explanation
Indices: 20210--20262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20200 GTTGACTTAG
20210 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20262 G
1 G
20263 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21142 original size:26 final size:26
Alignment explanation
Indices: 21113--21165 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21103 GTTGACTTAG
21113 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
21139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21165 G
1 G
21166 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22029 original size:25 final size:26
Alignment explanation
Indices: 21995--22046 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
21985 GTTGACTTAG
21995 GCATACGGAGTTCATT-CCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
22020 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
22046 G
1 G
22047 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.