Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168370.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_59, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 143476
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
File 1 of 2
Found at i:3605 original size:57 final size:57
Alignment explanation
Indices: 3333--3723 Score: 567
Period size: 57 Copynumber: 6.7 Consensus size: 57
3323 TCTTGCGCAG
* * *
3333 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTGAAATTTTATTTTTA-A
* *
3391 GGAAGATTGATACTTTCAACTTTTCCTCAAAAAT-TGATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATAT--TTTTTTGAAATTTTATTTTTAA
*
3450 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATA--TTTTTTT-GAAATTTT-ATTTTTAA
3512 GGAAAATTGATACTTTCAACTTTTCCTC-AAAA-ATTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGAAATTTTATTTTTAA
*
3568 GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAATTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAATTTTATTTTTAA
3625 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGAAATTTTATTTTTAA
3682 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTT
3724 TATTTTTATT
Statistics
Matches: 307, Mismatches: 10, Indels: 32
0.88 0.03 0.09
Matches are distributed among these distances:
55 1 0.00
56 37 0.12
57 111 0.36
58 54 0.18
59 45 0.15
60 13 0.04
61 13 0.04
62 33 0.11
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAATTTTATTTTTAA
Found at i:3747 original size:5 final size:5
Alignment explanation
Indices: 3739--3824 Score: 85
Period size: 5 Copynumber: 17.6 Consensus size: 5
3729 TTATTTAAAG
*
3739 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
3788 AAAA- ATAAA- AAAAT AAAAT AATAA- AAAAT AAAAT AAA
1 AAAAT A-AAAT AAAAT AAAAT AA-AAT AAAAT AAAAT AAA
3825 GGTAAAAAGG
Statistics
Matches: 70, Mismatches: 2, Indels: 18
0.78 0.02 0.20
Matches are distributed among these distances:
3 3 0.04
4 10 0.14
5 49 0.70
6 4 0.06
7 4 0.06
ACGTcount: A:0.80, C:0.01, G:0.02, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:3760 original size:13 final size:13
Alignment explanation
Indices: 3739--3824 Score: 59
Period size: 14 Copynumber: 6.2 Consensus size: 13
3729 TTATTTAAAG
*
3739 AAAATAAAATAAT
1 AAAAAAAAATAAT
*
3752 AAAACAAAATAAAAGT
1 AAAA-AAAA-ATAA-T
*
3768 GAAAATAAAAAAAAT
1 -AAAA-AAAAATAAT
3783 AAAATAAAAATAA-
1 AAAA-AAAAATAAT
3796 AAAAATAAAATAAT
1 AAAAA-AAAATAAT
*
3810 AAAAAATAA-AAT
1 AAAAAAAAATAAT
3822 AAA
1 AAA
3825 GGTAAAAAGG
Statistics
Matches: 62, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
12 7 0.11
13 18 0.29
14 20 0.32
15 4 0.06
16 5 0.08
17 8 0.13
ACGTcount: A:0.80, C:0.01, G:0.02, T:0.16
Consensus pattern (13 bp):
AAAAAAAAATAAT
Found at i:3868 original size:10 final size:11
Alignment explanation
Indices: 3854--3895 Score: 61
Period size: 10 Copynumber: 4.0 Consensus size: 11
3844 AAACCTAATC
3854 TAATAAATAAA
1 TAATAAATAAA
3865 -AATAAATAAA
1 TAATAAATAAA
*
3875 TAA-AAACAAA
1 TAATAAATAAA
3885 TAATAAATAAA
1 TAATAAATAAA
3896 AAAAAACCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (11 bp):
TAATAAATAAA
Found at i:3872 original size:14 final size:14
Alignment explanation
Indices: 3855--3891 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
3845 AACCTAATCT
*
3855 AATAAATAAAAATA
1 AATAAATAAAAACA
3869 AATAAATAAAAACA
1 AATAAATAAAAACA
3883 AAT-AATAAA
1 AATAAATAAA
3892 TAAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (14 bp):
AATAAATAAAAACA
Found at i:6073 original size:26 final size:26
Alignment explanation
Indices: 6043--6095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6033 GTTGAGTTAG
*
6043 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
6069 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
6095 G
1 G
6096 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:8403 original size:890 final size:863
Alignment explanation
Indices: 6678--11835 Score: 5348
Period size: 889 Copynumber: 5.9 Consensus size: 863
6668 CCCAATCTAA
* * * * *
6678 GCATACGAAGTTCATTCCCAGACTAAGATCAGATCA-T--AC--CGAGGGTTTCGGGTGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CACTAGACGACGAGAGTTGCGGGTGCACATG
* * * * *
6738 TTGGGCTCAGGCATGTGCTGGTGTCATA-TTTTTTTCGCCCGGGCCACCATCGTCGAAGCATCGC
65 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCG-C---GCA----
* * * * * *
6802 CGGAGAACCTGACAGGCAGCATTGGGGTTCTGACGATTTGGGGG-GGTCGGGGGTGTGCTCACAT
122 --GAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TTGGGGGCCG--GGGGGTGTGCGCACAT
* * *
6866 GATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGACA
182 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
6931 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
247 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
6996 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAGCTGAATT
312 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* *
7061 TTTTTGTGCTTGCCAACAAAAATACAATGATCACGTCTACCACA-TTTGGGGCCAAAACTCCTTC
377 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTT-GGGCCAAAACTCCTTC
* * * * ** * * *
7125 TAAAAAAATTTTAAAAAATCCGGAACCGTAAAATGTTTTGAAAATCGTAAAAAATAAAAAACGAG
440 TGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * *
7190 TCGTTTTGCAATGAAACTTCACATGAAGGCTTAAGGGACTA-TGTATGAA-TTACAAAGCCAT-A
505 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAA
* **
7252 AAA-GGCAATTGGCATGGCCAGAAATATGAAGGATATGCCTAAACCCCACC-ACCACCCTGCCGA
569 AAATGGC-ATTGGCATGG-CAGAAATATGAA-GATGTGCCTAAA-CCCACCTACCACCCTATCGA
* * * *
7315 TCCACCGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAATGCCTGCCAGCCTGCCCGCTCGTTTCG
630 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCTCGTTTCG
* * ** * * *
7380 TCGGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAAGATTGGATC-GAACTGAGGGTTGCAG
694 TCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGG
* * * * *
7444 CAGTAGGATCGATAGCACATTGAGGGGGACCCGACCGATCCCCGACTTGCGCATTCTAG-CCCTC
758 CAGCAGGATTG-CAGCACACTGAGGGGGACCCGACCGATCCCCG-CTTGCGCATCCT-GCCCCTC
* * *
7508 TGGCCGGCTGAGCGCCCGCACGTTCATTTTGTGGGTTGACTTAG
820 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
7552 GCATACGGAGTTCATTCCCAGTCTAAGCATAAGAAGTTCATTCCCAATCTAAGATCAGACTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A----C-A-CT-AGA-C-GAC--G--
* * * *
7617 CACGAGTTGCGGGTGCACATGCTGGGCTTGGGTATGTGCTGGTACCGTATTTTTTTTCGCCTGGG
46 -A-GAGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGG
7682 GCACCATCGC-CAGAGAACCTGACCGACGGCATTGGGGTTCC-AGCGATTGGGGG-CGGGCGGCG
109 GCACCATCGCGCAGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATTGGGGGCCGGG-GG-G
* *
7744 TGTGCGCGCATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATC
171 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
7809 AAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
236 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
7874 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
301 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* * * *
7939 TTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTTCTAAGTTTTGGGCCA
366 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGCCA
* ** * *
8004 AAACTACTTCTGAAAAAATTTAAAAAAAATCTTGAACCGTAGAAAGTTTCAAAAATCGTGAAAAA
430 AAACTCCTTCTGAAAAAATTT-AAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
8069 TAGAGAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
494 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
8134 CAAGCTACAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCC
559 CAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
8199 TATCGATCCACGGCTTGTGCATCCCACTTCTCTGGCCGGTGTAGTGCCCACCCGTCCGTCGGCTC
624 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCTC
* * *
8264 GTTTCGTCGATTGGCTTAGGCATACGAAATTCATTCCCAGTCTAAGATCATACCAGACCGAGGGT
688 GTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * * * *
8329 TGTGGCAGCAGGGTATGAAACATACAGAGGGGGACCCGACCGATCCCCTGCTTGCGCATCTTGCC
753 TGCGGCAGCAGGAT-TGCAGCACACTGAGGGGGACCCGACCGATCCCC-GCTTGCGCATCCTGCC
* * * *
8394 CCTCTGGCCGACTGAGCGCCCGTACGCTCATTTCGTGCGTTGACTTAG
816 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
8442 GCATATGGAGTTCATTCCTAGTCTAAGCATACGGAATTCACTCCCAGTCTAAGATCAAACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CGG-----A----CA--CT-AG-----AC--GA-
* * * * *
8507 CGAGGGTTGTGGGTGCACATGCTGGGTTCGGGTATGTGCTGGTGCCGTATTTTTGTTT-GCTCGG
44 CGAGAGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT-TTTCGCCCGG
* * * * * *
8571 GCCACCATCGTCG--GAGAACCTGACAGGCGGCAAT-GTGTTCCGGCGATTGGGGGGCCGGGGGG
108 GGCACCATCG-CGCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGCCGGGGGG
* * * * *
8633 TGTGCGCAAATAATGTACGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTAACCCTCATC
171 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
8698 AAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCA
236 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
8763 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTT
301 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* * *
8828 TTAGCTGAATTTTTTTGTGCATGCCCACAAAAATACAAGGATCGCGTCTACCAAGTTTGGCACCA
366 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCA
* * * **
8893 AAACGCCTTTTGAAAAAATTAAAAAAAATCCCGAACAATAAAAAGTTTCAAAAATCATGAAAAAT
430 AAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* *
8958 AGAAAACGAGTCATCTTGCCATGAAACTGCACATGAAGGCTTAAGGGA-CATTGTATGAATTTAC
495 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
9022 AAGCCATAAAAAGGGCATTGGCACT-GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
560 AAGCCATAAAAATGGCATTGGCA-TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
9086 TATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCCGACGTAGTGCCCACCCGCTCGCCCGTTC
624 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCGCTC
* * * ** * * *
9151 GTTTCGTC-AGTTGGCTTAGGAATACGAAGTCCATTCCCAGTCTAAGATTGGATCGGATCGAGGG
688 GTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * * * * *
9215 TTGCGGTAGCAGGATCGGCAGGACGCTGAGGGGGACCCGGCTGATCCCCGGCTTACGCATGCTGC
752 TTGCGGCAGCAGGAT-TGCAGCACACTGAGGGGGACCCGACCGATCCCC-GCTTGCGCATCCTGC
* * * * *
9280 CCTTTTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTCG
815 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
9329 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-TC-AGAC--CGAGGGTTGCGAGCGGACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACACTAGACGACGAGAGTTGCGGGTGCACATGC
* * ** * * * **
9390 TGGGCTCGGGCATATGCTGATGTTGCA-TTTTTTTCGCTCGGGACAATATCGCTG--GAGAACCT
66 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGC-GCAGAGAACCT
** * * * *
9452 GATTGATGGCATTGGGGTTTCTG-CGATT----G--GGGGGGTATGCGCACATGATGTACGATGG
130 GACCGACGGCATTGGGG-TTCCGACGATTGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
9510 GTGCTGGTGCTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
9575 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGAGTCTGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
9640 -CTTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
324 AC-TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
9704 GCCAAC--AAA-AC-----TC-C-T-T--C-----T-------AA---------AAAAATTTTAA
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTAA
** * * *
9735 AAAAATCTTGAACCGTAAATAGTTTCAAAATTCATGAAAAATAGAAAACGAGTCGTGTTGCCATG
453 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
9800 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
518 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
9865 TGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCC
583 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * * *
9930 TGCCTCTCTTGCCAGCATAGTGCCCGTCCGCC-CACCTGCTCGTTTCATCGGTTGGCTTAGGTAT
648 CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGC-CC-GCTCGTTTCGTCGATTGGCTTAGGCAT
* * *
9994 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-AGGGCTTGTGGTAGCAGGA-T-------
711 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-TTGCGGCAGCAGGATTGCAGCAC
*
10050 -C-------G----G--C-A-----GCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCA
775 ACTGAGGGGGACCCGACCGATCCCCGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
10095 CGCTCGTTTCATGGGTTGACATAG
840 CGCTCGTTTCGTGGGTTGACTTAG
* * **
10119 GCATACGGAGTTCATTCCCAGTCTAAGATCGG--ACTGGAC--CGAGGGTTATGGGTGCACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACACTAGACGACGAGAGTTGCGGGTGCACATGC
* * * * *
10180 TGGGCTCGAGCATGTGCTAGTGTCGCATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTC
66 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCG-C---GCA-----
* * ** * * *
10245 GGAGAACCTGGCCGGCGGCATTGGGGTTCCGATAATTGGGGGACTGGGGGTGTGCGCATATGATG
122 -GAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGCCGGGGGGTGTGCGCACATGATG
* *
10310 TGTGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
186 TGCGATGGGT----G--C-TGG----TA-CTTGG-CCCTTA----T-AT------T-G-G-----
*
10375 ACACCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
220 ---CCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
10440 CAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
281 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
10505 ATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCA
346 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCA
** * * * * *
10569 TATCTGCCAAGTTTGGCGCCAAAACGCCTTCTGAAAAAATTTTAAAAAATCCCGATCCTTAAAAA
410 CGTCTACCAAGTTTGG-GCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAA
* *
10634 GTTTCGAAAATCAT-ATAAAATAGAAAACGAGTCGTCTTGCGATGAAACTTCACATGAAGGCTTA
474 GTTTCAAAAATCATGA-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
*
10698 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAGAAATATGAAGATGT
538 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
* *
10763 GCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCCGGCGTAG
603 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* *
10828 TGCCCGCACGCCCGCCCGCTCGTTTCGTC-AGTTGGCTTAGGCATACGGAGTTCATTCGCAGTCT
668 TGCCCGCCCG-CCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** ** * * * * *
10892 AAGAT-TGAACTGGATTGAGGGTTGCGGTAGCAGGATCGGCACCACACCGAGGGGGACCTCG-CT
731 AAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGAT-TGCAGCACACTGAGGGGGACC-CGACC
* * *
10955 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTTGTGGGTT
793 GATCCCC-GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
11020 GACTTAG
857 GACTTAG
* * * *
11027 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC-C-GGAC--CGAGGGTTACGGGTGCACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACACTAGACGACGAGAGTTGCGGGTGCACATGC
* *
11088 TGGGCTCGGGCATGTCCTGGTGCCGTATTTTTTTTTGCCCGGGGCACCATCACCGGAGCATTGTC
66 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCAT---C---GC---G-C
*
11153 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGTGGGCCGGGGGGGTGTGCGCACATG
121 AGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GG-GGGCC-GGGGGGTGTGCGCACATG
* * *
11218 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTTATCAAACCTTGAGAA
183 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
11283 CTCACAACCCCTGAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
248 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
11348 GAAATGGGGACACTTTTTTCAAATGGTCACGAAATCCTGTACACTTCGAGTTTTTAGCTGAATTG
313 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
11413 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCATTCTT
378 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTC-T
* * * * * *
11478 CAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
441 GAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
**
11543 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAA
506 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
11608 ATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATG
571 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
11673 GCTTACGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCCGCTAGTTTGGTCGGTTG
636 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGATTG
* * ** * * *
11738 GCTTAGGCATACGGAGTTCATTCTCTGTCTAAGATTGGATCAGACCGAGGGTTGCAGCAGCAAGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
11803 TTGGCAGCACACTGAGGGGGACCCGACCGATCC
766 TT-GCAGCACACTGAGGGGGACCCGACCGATCC
11836 TTGGCTTACG
Statistics
Matches: 3628, Mismatches: 434, Indels: 442
0.81 0.10 0.10
Matches are distributed among these distances:
789 1 0.00
790 129 0.04
791 19 0.01
792 1 0.00
794 1 0.00
796 1 0.00
799 1 0.00
801 4 0.00
802 23 0.01
803 1 0.00
806 1 0.00
808 26 0.01
810 1 0.00
812 1 0.00
814 1 0.00
815 3 0.00
818 1 0.00
819 99 0.03
820 189 0.05
821 6 0.00
825 1 0.00
826 2 0.00
828 2 0.00
832 1 0.00
833 1 0.00
834 1 0.00
836 1 0.00
841 1 0.00
842 4 0.00
843 156 0.04
844 6 0.00
845 4 0.00
846 4 0.00
851 4 0.00
852 3 0.00
853 2 0.00
854 215 0.06
856 2 0.00
859 4 0.00
860 34 0.01
861 46 0.01
862 4 0.00
866 2 0.00
869 2 0.00
871 2 0.00
873 1 0.00
874 25 0.01
875 8 0.00
876 288 0.08
877 223 0.06
878 278 0.08
879 8 0.00
880 2 0.00
881 1 0.00
884 1 0.00
885 5 0.00
886 5 0.00
887 296 0.08
888 95 0.03
889 541 0.15
890 452 0.12
891 40 0.01
892 18 0.00
893 5 0.00
894 4 0.00
895 4 0.00
896 4 0.00
898 6 0.00
899 5 0.00
900 41 0.01
901 22 0.01
902 1 0.00
904 3 0.00
905 1 0.00
907 1 0.00
908 191 0.05
909 3 0.00
910 4 0.00
911 29 0.01
913 2 0.00
914 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (863 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACACTAGACGACGAGAGTTGCGGGTGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCGCAGAGAACCTG
ACCGACGGCATTGGGGTTCCGACGATTGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTAAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTGCAGCACACTGAG
GGGGACCCGACCGATCCCCGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAG
Found at i:8481 original size:26 final size:26
Alignment explanation
Indices: 8442--8494 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8432 GTTGACTTAG
* * * *
8442 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCACTCCCAGTCTAA
8468 GCATACGGAATTCACTCCCAGTCTAA
1 GCATACGGAATTCACTCCCAGTCTAA
8494 G
1 G
8495 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCACTCCCAGTCTAA
Found at i:10390 original size:35 final size:35
Alignment explanation
Indices: 10344--10420 Score: 145
Period size: 35 Copynumber: 2.2 Consensus size: 35
10334 CTTATATTGG
*
10344 CCCCTTATCCCTCATCAAACCTCGAGAACTCACAC
1 CCCCTTATCCCTCATCAAACCTCAAGAACTCACAC
10379 CCCCTTATCCCTCATCAAACCTCAAGAACTCACAC
1 CCCCTTATCCCTCATCAAACCTCAAGAACTCACAC
10414 CCCCTTA
1 CCCCTTA
10421 AAGAGCATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.29, C:0.47, G:0.04, T:0.21
Consensus pattern (35 bp):
CCCCTTATCCCTCATCAAACCTCAAGAACTCACAC
Found at i:19052 original size:26 final size:26
Alignment explanation
Indices: 19015--19065 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19005 GTTGACTTAT
*
19015 GCATACGTAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
*
19041 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTAATTCCCAGTCTA
19066 GGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:20318 original size:865 final size:865
Alignment explanation
Indices: 17911--21747 Score: 4265
Period size: 865 Copynumber: 4.3 Consensus size: 865
17901 GTCCGTGACA
* * * * * * * *
17911 CACGGCTTGCGCATCCTGCCTCTTTGGCCGGCGTAGTGCCCGCCCG--TG-CCACTCATTTCAT-
1 CACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTC
* * * ** ** *
17972 TGATTGGCTTAGGCATATGGAGTTCATTTCCAGTCTAAGATCAGACTGGA-CTGAGGGTTGTGGC
66 AG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTACGAC
* * * * *
18036 AGTAGGATCGGCAACACGTTGAGGGGGACCCGACTGATCCCCGGCTTACGCATCCTGCCCCTCTG
129 AGCAAGATCGGCAGCACGTTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTG
* * * ** *
18101 GCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
194 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTACACATACGGAGTTCATTCCCAGTC
* * * * * *
18166 TAAGATCAGACCAGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTG-TTGTGCCACA
259 TAAGATCAGACCGGA-CCAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCA
* *
18230 TTTCTTTTT-GCCCGGGCCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
323 TTT-TTTTTCACCCGGGCCACCATC-T-GGA-CA----CGGAGAACCTGACCGGCGGCATTAGGG
* * *
18294 TTCCGATGATTGGGGGGCCAGGGGGTGTGCGCACATGATGTCCGATGGGTGCCGGTACTTGGCCC
380 TTCCGATGATT-GGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCC
*
18359 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGA
444 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
18423 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
509 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
18488 ACAAAATCCTGTACACATCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGG
574 ACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGG
**
18553 ATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTT-AAAAAATCTTGAACCGT
639 ATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGT
*
18617 AAAAAGTTTCAAAAATCT-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAG
703 AAAAAGTTTCAAAAAT-TGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
18681 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAA
767 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAA
* *
18746 GATGTGCCTAAACCCACCTACCACCTTACCGATC
832 GATGTGCCTAAACCCACCTACCACCCTATCGATC
** * **
18780 CATAGCTTGCGCATCCCGCCTCTCTGGCCGGTATAGTGC-CTGCCCGCCCGCCCGCTCGTTTCGT
1 CACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCTC-GCCCGCCCGCCCGCTCGTTTCGT
* * * *
18844 CGGTTGGATTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTAC-AGC
65 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGA-C
* * * * ** * *
18908 AGCAGGATTGGTAGCACGTTGAGGGTGACTTGGCCGATCCCCGGCTTGCGCATCCTACCCCTCTG
129 AGCAAGATCGGCAGCACGTTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTG
* * *
18973 GCCGGCTGAGCACCCCCACACTCGTTTCATGGGTTGACTTATGCATACGTAGTTAATTCCCAGTC
194 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA--C--AC-------A-T---A--C
* * *
19038 TAAGCATACGAAGTTCATTCCCAGTCTAGGATCAGACCGGACCAAGGGTTACTGGTGCACATGCT
242 ---G-----G-AGTTCATTCCCAGTCTAAGATCAGACCGGACC-AGGGTTGCGGGTGCACATGCT
* * * **
19103 AGGTTCAGGCATGTGCTGGTGCCGTATTTTTTTTCACCTAGGCCACCATCGTCGGAGCATCACTG
297 AGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGCCACCATC-T--G-G-A-CAC-G
* * * * *
19168 GAGAACTTGATCGGCGACATTGGGGTTCCGATGATTGGGGGTCCGGGGGGTTGTGCGCACATGAT
355 GAGAACCTGACCGGCGGCATTAGGGTTCCGATGATTGGGGG-CCAGGGGG-TGTGCGCACATGAT
* * *
19233 GTGCAATGGGTGCTGGTACCTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
418 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * ** *
19298 CACACCCCATTAAAGAG-ATTTTTA-ATTTTACAGGTTTGTTGGTAGCAGCCATTAAAGTGTCTG
483 CACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * ** *
19361 AAATGTGGACACTTTTTTCAAATAGTAACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTT
547 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATGTT
* **
19426 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGAGAAAACTACTTCTGA
612 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCTGA
**
19491 AAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTC
676 AAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTC
*
19556 GTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
741 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
19621 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
806 TGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * *
19681 CATGGCTTGCGAATCCCGTCTCTCTGGCCAGTGTAGTGCTCGCCCGCTCGCCTGCTTGTTTCGTC
1 CACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTC
* * **
19746 AGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGGTTGGACCAGATCGAGGGTTACGACAG
66 AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAG
* * * * * ** * *
19811 C-AGCATCGGCAGCACATAGAGAGGGACCTGGCCGATCCTTGGCTTACGCATTCTGCCCCTCTGG
131 CAAG-ATCGGCAGCACGTTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
* * * * * *
19875 TCGGCTGAGCACCCGTATGCTCATTTCGTGGGCTGACTTACACATATGGAGTTCATTCCCAGTCT
195 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTACACATACGGAGTTCATTCCCAGTCT
* * *
19940 AAGATCAGACCGGACCATGGGATGCGTGTGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGCAT
260 AAGATCAGACCGGACCA-GGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
20005 TTTTTTTCGCCCGGGACACCAT-T-G-C-CGGAGAACCTGACCGACGGCATTAGGGTTCTGGTGA
324 TTTTTTTCACCCGGGCCACCATCTGGACACGGAGAACCTGACCGGCGGCATTAGGGTTCCGATGA
*
20066 TTGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
389 TTG-GGGGCC-AGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
*
20131 GCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
452 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
20196 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTGACAAAATC
517 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
20261 CTGTACACTTCAAGTTTTTACCTGAAT-TGTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
582 CTGTACACTTCAAGTTTTTAGCTGAATGT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * *
20325 CTACTAAATTTGGGGCCAAAACTCCTCTTGAAAAAATTTAAAAAAAATCCCAAACCGTAAAAAGT
646 CTACCAAGTTTGGGGCCAAAACTCTTC-TGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGT
** * *
20390 TTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCCTAAGG
710 TTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
* *
20455 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTTCT
775 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCC
*
20520 TAAACCCATCTACCACCCTATCGATC
840 TAAACCCACCTACCACCCTATCGATC
* * * * * *
20546 GACGGCTTCCGCATCCCGGCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATC
1 CACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * * *
20611 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCTAGGGTTGCGGCAC
66 AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAG
* * * *
20676 CAAGATCGGCAGCACGTTGAGGGGGACCCGACC-ACTCCCTGACTTGTGCACCCTGCCCCTCTGG
131 CAAGATCGGCAGCACGTTGAGGGGGACCCGACCGA-TCCCCGGCTTGCGCATCCTGCCCCTCTGG
* * *
20740 CCGGCTGAGCGCCAGCACACTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTTCCAGTCT
195 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGG------T-----T--G-A---C--TT--A--C-
* * * * * *
20805 AAGCATACGAAGTTCATTACCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATACTG
236 -A-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC-AGGGTTGCGGGTGCACATGCTA
* * * * * * *
20870 GGCTCGAGCATGTGCTGGAGCGGCATTTTTTGTCACCCGGGGCACCATC--G-C-CGAATAACCT
298 GGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGCCACCATCTGGACACGGAGAACCT
* * * * *
20931 GACTGGCGGCATTAGGGTTCCGGTGATTGGGGGGCAGGGGGTGTGCACACATGATGTGCGATGGG
363 GACCGGCGGCATTAGGGTTCCGATGATTGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGG
* * * * * *
20996 TGCTGGTACTTGGCCCTTATATTCGCCCCCTCTCCCTCGTCAAACCTTGAGAAGTCACACCCTCT
428 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
21061 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACA
493 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
21126 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATAC
558 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGC
* * * *
21191 CAAAAAAAATACATGGATCAAGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAA
623 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCTGAAAAAATTTTAA
* *
21256 AAAAAT-TCAAACCATAAAAAGTTTTAAAAATATTTGAACCATAAAAAGTTTTAAAAATCATGCA
687 AAAAATCTCAAACCGTAAAAAG-TTTCAAAA-A-TTG-----T-----G--------A--A---A
* * *
21320 GAATAGAAAATGAGTCGTCTTGGCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAAT
726 -AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* * *
21385 TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCAACTA
790 TTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
21450 CCCTATCGATC
855 CCCTATCGATC
* * * *
21461 TACGGCTTGCGCATCCCGCCTCTCTGG-CAGGCGTAGTGCCCTCCCACCCACCCGTCCGCTCGTT
1 CACGGCTTGCGCATCCCGCCTCTCTGGCCA-GCGTAGTG--CT--CGCCCGCCCGCCCGCTCGTT
* ** * * * *
21525 TTGTCAGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGTTCAGACCGGATCAAGGGTTGC
61 TCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTAC
* * * * * *
21590 GACAGCAAGATCGGTAGCACGCTGAGGGGGACCCAACCGATCCCCGACTTGTGCATCCTACCCCT
126 GACAGCAAGATCGGCAGCACGTTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCT
** * **
21655 CTGGCCGGCTGAG-AGCCTACACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCC
191 CTGGCCGGCTGAGCA-CCCGCACGCTCGTTTCGTGGGTTGACTTACACATACGGAGTTCATTCCC
*
21719 AGTCTAAGATCAGACTGGACCGAGGGTTG
255 AGTCTAAGATCAGACCGGACC-AGGGTTG
21748 TGGTAGCTGG
Statistics
Matches: 2521, Mismatches: 324, Indels: 222
0.82 0.11 0.07
Matches are distributed among these distances:
864 133 0.05
865 515 0.20
866 3 0.00
868 1 0.00
869 39 0.02
871 1 0.00
872 150 0.06
873 3 0.00
874 1 0.00
875 88 0.03
876 3 0.00
878 1 0.00
879 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 3 0.00
886 2 0.00
887 1 0.00
888 14 0.01
889 275 0.11
890 12 0.00
891 129 0.05
892 2 0.00
893 42 0.02
896 1 0.00
897 3 0.00
898 70 0.03
899 67 0.03
900 242 0.10
901 381 0.15
902 6 0.00
905 1 0.00
906 1 0.00
908 1 0.00
909 1 0.00
911 1 0.00
913 1 0.00
914 2 0.00
915 161 0.06
917 1 0.00
919 158 0.06
920 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (865 bp):
CACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTC
AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAG
CAAGATCGGCAGCACGTTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTACACATACGGAGTTCATTCCCAGTCTA
AGATCAGACCGGACCAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
TTTTTCACCCGGGCCACCATCTGGACACGGAGAACCTGACCGGCGGCATTAGGGTTCCGATGATT
GGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
ACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAA
AATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATC
Found at i:20817 original size:26 final size:26
Alignment explanation
Indices: 20781--20833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20771 GTTAACTTAG
*
20781 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
20807 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
20833 G
1 G
20834 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:21250 original size:889 final size:900
Alignment explanation
Indices: 19924--21726 Score: 2454
Period size: 889 Copynumber: 2.0 Consensus size: 900
19914 ACACATATGG
* * * * *
19924 AGTTCATTCCCAGTCTAAGATCAGACCGGACCATGGGATGCGTGTGCACATGCTAGGCTCGGGCA
1 AGTTCATTACCAGTCTAAGATCAGACCAGACCATGGGATGCGGGTGCACATACTAGGCTCGAGCA
* * * * *
19989 TGTGCTGGTGTCGCATTTTTTTTCGCCCGGGACACCATTGCCGGAGAACCTGACCGACGGCATTA
66 TGTGCTGGAGTCGCATTTTTTGTCACCCGGGACACCATCGCCGAAGAACCTGACCGACGGCATTA
* * *
20054 GGGTTCTGGTGATTGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
131 GGGTTCCGGTGATTGAGGGGCCGAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTG
* *
20119 GCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
196 GCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
20184 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAT
261 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
20249 GGTGACAAAATCCTGTACACTTCAAGTTTTTACCTGAATTGTTTTGTGCATGCCAACAAAAATAC
326 GGTCACAAAATCCTGTACACTTCAAGTTTTTACCTGAATTGTTTTGTGCATACCAAAAAAAATAC
* *
20314 AAGGATCACGTCTACTAAATTTGGGGCCAAAACTCCTCTTGAAAAAATTTAAAAAAAATCCCAAA
391 AAGGATCAAGTCTACCAAATTTGGGGCCAAAACTCCTCTTGAAAAAATTTAAAAAAAAT-CCAAA
* *
20379 CCGTAAAAAG-TTTCAAAA-A-T-CAT-G-AAAA-A-C-AGAAAACGAGTCGTCTTGCCATGAAA
455 CCATAAAAAGTTTTAAAAATATTACATAGTAAAACAGCAAGAAAACGAGTCGTCTTGCCATGAAA
20435 CTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
520 CTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * * *
20500 CAAAAATATGAAGATGTTCTTAAACCCATCTACCACCCTATCGATCGACGGCTTCCGCATCCCGG
585 CAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCGACGGCTTCCGCATCCCGC
* * * * *
20565 CTCTCTGGCCGGCGTAGTG-CCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
650 CTCTCTGGCAGGCGTAGTGCCCCACCCACCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACA
* * *
20629 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCTAGGGTTGCGGCACCAAGATCGGCAGCACGTT
715 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGACACCAAGATCGGCAGCACGCT
* * * *
20694 GAGGGGGACCCGACC-ACTCCCTGACTTGTGCACCCTGCCCCTCTGGCCGGCTGAGCGCC-AGCA
780 GAGGGGGACCCAACCGA-TCCCCGACTTGTGCACCCTACCCCTCTGGCCGGCTGAGAGCCTA-CA
* *
20757 CACTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTTCCAGTCTAAGCATACGA
843 CACTCGTTTCGTGGGTTAACCTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGA
* * *
20815 AGTTCATTACCAGTCTAAGATCGGACCAGACCGA-GGGTTGCGGGTGCACATACTGGGCTCGAGC
1 AGTTCATTACCAGTCTAAGATCAGACCAGACC-ATGGGATGCGGGTGCACATACTAGGCTCGAGC
* * * *
20879 ATGTGCTGGAG-CGGCATTTTTTGTCACCCGGGGCACCATCGCCGAATAACCTGACTGGCGGCAT
65 ATGTGCTGGAGTC-GCATTTTTTGTCACCCGGGACACCATCGCCGAAGAACCTGACCGACGGCAT
* *
20943 TAGGGTTCCGGTGATTG-GGGGGC-AGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
129 TAGGGTTCCGGTGATTGAGGGGCCGAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACT
* * * * *
21006 TGGCCCTTATATTCGCCCCCTCTCCCTCGTCAAACCTTGAGAAGTCACACCCTCTTAAAGAGCAT
194 TGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
21071 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAA
259 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAA
* *
21136 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TGTTTTTGTGCATACCAAAAAAAA
324 ATGGTCACAAAATCCTGTACACTTCAAGTTTTTACCTGAATTG-TTTTGTGCATACCAAAAAAAA
* * * * *
21200 TACATGGATCAAGTCTACCAAGTTTGGGGTCAAAACTCCT-TCTGAAAAAATTTTAAAAAAATTC
388 TACAAGGATCAAGTCTACCAAATTTGGGGCCAAAACTCCTCT-TGAAAAAATTTAAAAAAAATCC
21264 AAACCATAAAAAGTTTTAAAAATATTTGAACCATAAAAAGTTTTAAAAATCATGCAGAATAGAAA
452 AAACCATAAAAAGTTTTAAAAATA-TT--A-CAT----AG---T-AAAA-CA-GC---A-AGAAA
* * * *
21329 ATGAGTCGTCTTGGCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
499 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCC
* *
21394 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCAACTACCCTATCGA
564 ATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGA
* * *
21459 TCTACGGCTTGCGCATCCCGCCTCTCTGGCAGGCGTAGTGCCCTCCCACCCACCCGTCCGCTCGT
629 TCGACGGCTTCCGCATCCCGCCTCTCTGGCAGGCGTAGTG--C-CCCACCCACCCGCCCGCTCGT
** * * ** *
21524 TTTGTCAGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGTTCAGACCGGATCAAGGGTTG
691 TTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTG
* * *
21589 CGACAGCAAGATCGGTAGCACGCTGAGGGGGACCCAACCGATCCCCGACTTGTGCATCCTACCCC
756 CGACACCAAGATCGGCAGCACGCTGAGGGGGACCCAACCGATCCCCGACTTGTGCACCCTACCCC
* * *
21654 TCTGGCCGGCTGAGAGCCTACACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCC
821 TCTGGCCGGCTGAGAGCCTACACACTCGTTTCGTGGGTTAACCTAGGCATACGAAGTTCATTCCC
21719 AGTCTAAG
886 AGTCTAAG
21727 ATCAGACTGG
Statistics
Matches: 789, Mismatches: 86, Indels: 46
0.86 0.09 0.05
Matches are distributed among these distances:
888 16 0.02
889 275 0.35
890 7 0.01
891 123 0.16
892 2 0.00
896 3 0.00
901 1 0.00
906 4 0.01
908 1 0.00
910 1 0.00
915 161 0.20
919 193 0.24
920 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (900 bp):
AGTTCATTACCAGTCTAAGATCAGACCAGACCATGGGATGCGGGTGCACATACTAGGCTCGAGCA
TGTGCTGGAGTCGCATTTTTTGTCACCCGGGACACCATCGCCGAAGAACCTGACCGACGGCATTA
GGGTTCCGGTGATTGAGGGGCCGAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTG
GCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCCTGTACACTTCAAGTTTTTACCTGAATTGTTTTGTGCATACCAAAAAAAATAC
AAGGATCAAGTCTACCAAATTTGGGGCCAAAACTCCTCTTGAAAAAATTTAAAAAAAATCCAAAC
CATAAAAAGTTTTAAAAATATTACATAGTAAAACAGCAAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
AAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCGACGGCTTCCGCATCCCGCC
TCTCTGGCAGGCGTAGTGCCCCACCCACCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAG
AGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGACACCAAGATCGGCAGCACGCTG
AGGGGGACCCAACCGATCCCCGACTTGTGCACCCTACCCCTCTGGCCGGCTGAGAGCCTACACAC
TCGTTTCGTGGGTTAACCTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGA
Found at i:21313 original size:27 final size:27
Alignment explanation
Indices: 21244--21313 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
21234 ACTCCTTCTG
* *
21244 AAAAAATTTTAAAAAAATTCAAACCAT
1 AAAAAGTTTTAAAAATATTCAAACCAT
**
21271 AAAAAGTTTTAAAAATATTTGAACCAT
1 AAAAAGTTTTAAAAATATTCAAACCAT
21298 AAAAAGTTTTAAAAAT
1 AAAAAGTTTTAAAAAT
21314 CATGCAGAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (27 bp):
AAAAAGTTTTAAAAATATTCAAACCAT
Found at i:21806 original size:159 final size:158
Alignment explanation
Indices: 21538--21884 Score: 406
Period size: 159 Copynumber: 2.2 Consensus size: 158
21528 TCAGTTGGCT
* * *
21538 TAGGCATATAGAGTTCATTCCCAGTCTAAGTTCAGACCGGATCAAGGGTTGCGACAGCAAGATCG
1 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAAGATCG
* ** * *
21603 GTAGCACGCTGAGGGGGACCCAACCGATCCCCGACTTGTGCATCCTACCCCTCTGGCCGGCTGAG
66 GTAGCACGCTGACGGGGACCCAACCGATCCCCGACTTGCACATCCTACCCCTCTAGCCGACTGAG
* *
21668 AGCCTACACGCTCGTTTCGTGGGTTGACC
131 AGCCTACACACTCGTTT-GTGGGTTCACC
* * * * ** **
21697 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGCTGGATCG
1 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAAGATCG
** *** *
21762 GTAGCACGCTGACTTGGACCGTGCCGATCCCCGACTTGCACATCCTGCCCCTCTAGCCGACTGAG
66 GTAGCACGCTGACGGGGACCCAACCGATCCCCGACTTGCACATCCTACCCCTCTAGCCGACTGAG
* ** *
21827 CGCCTGTACACTCGTTTGTGGGTTCACT
131 AGCCTACACACTCGTTTGTGGGTTCACC
* * *
21855 TATGCATACCGAGTTCATTCCCAATCTAAG
1 TAGGCATACAGAGTTCATTCCCAGTCTAAG
21885 CATACGGAGT
Statistics
Matches: 157, Mismatches: 31, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
158 36 0.23
159 121 0.77
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.24
Consensus pattern (158 bp):
TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAAGATCG
GTAGCACGCTGACGGGGACCCAACCGATCCCCGACTTGCACATCCTACCCCTCTAGCCGACTGAG
AGCCTACACACTCGTTTGTGGGTTCACC
Found at i:24123 original size:411 final size:414
Alignment explanation
Indices: 23357--24124 Score: 976
Period size: 411 Copynumber: 1.9 Consensus size: 414
23347 AAATGGCATT
* * *
23357 GGCATGGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCCGCTTGCGC
1 GGCATGGCAGAAACATAAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACCGCTTGCGC
* * * * *
23422 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCGCCCGCTTGTTCCATCGGTTGGCTTAGG
66 ATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCG-CAGCCCGCTTGTTCCATCAGTTGGCTTAGG
* * * ** *
23487 CATACGGAGTTCATTCCTAGTCTAAGATTACGCTGGACTAAGGGTTGCGGTAGCAGGATCGACAG
130 CACACGGAGTTCATTCCCAGTCTAAGATTACGATGGACTAAGGGTTGCGACAGCAGGATCGACAA
** * * * * * *
23552 CATGCTGAGGGGGACCCGATCGATCAGCGTCTTGAGCATGCTGCCCCTCTGGCCTGCTGAGTGCC
195 CACACTGAGGGGGACCCGACCAATCACCGACTTGAGCATCCTGCCCCTCTGGCCAGCTGAGTGCC
* ** * * *
23617 CGCTCGTTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG
260 CGCACACTCATTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG
*
23682 ACCAAGGGTTGCGGGTGCACATGCTGGGCTTGATCATGTGTTAGTGTCGCATTTTTTTTCATCGG
325 ACCAAGGGTTACGGGTGCACATGCTGGGCTTGATCATGTGTTAGTGTCGCATTTTTTTTCATCGG
23747 AGCATCGCCAGAGAACCTGACCGAC
390 AGCATCGCCAGAGAACCTGACCGAC
* * * * *
23772 GGCATGGCAGAAATATAAAGATGTGCCTAAACCTACCGACCACTCTATCGCTCCACGGCTTGCGC
1 GGCATGGCAGAAACATAAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACCGCTTGCGC
* *
23837 ATCCCGCCTCTCTGGCCAGCGTATTGCCCG-CC-CAG-CCG-TTCGTTTCATCAGTTGGCTTAGG
66 ATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGCAGCCCGCTT-GTTCCATCAGTTGGCTTAGG
* * * *
23898 CACACGGAGTTCATTCCCAGTCTAAGA-T-CGAATCGGACTGAGGGTTGCGACAGTAGGATTGGC
130 CACACGGAGTTCATTCCCAGTCTAAGATTACG-AT-GGACTAAGGGTTGCGACAGCAGGATCGAC
* * * * *
23961 AATACACTGAGGGGGACCTGGCCAATCCCCGACTTGCA-CATCCTGCCCCTCTGGTCAGCTGA-T
193 AACACACTGAGGGGGACCCGACCAATCACCGACTTG-AGCATCCTGCCCCTCTGGCCAGCTGAGT
* * *
24024 CGCCTGCACACTCATTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCTAGTCTAAGATCGGA
257 -GCCCGCACACTCATTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGAA
* *
24089 TCAGACCGAGGGTTACGGGTGCACATGCTGGGCTTG
321 CCAGACCAAGGGTTACGGGTGCACATGCTGGGCTTG
24125 GGCATGTGCT
Statistics
Matches: 298, Mismatches: 50, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
409 2 0.01
410 5 0.02
411 203 0.68
412 3 0.01
414 2 0.01
415 83 0.28
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (414 bp):
GGCATGGCAGAAACATAAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACCGCTTGCGC
ATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGCAGCCCGCTTGTTCCATCAGTTGGCTTAGGC
ACACGGAGTTCATTCCCAGTCTAAGATTACGATGGACTAAGGGTTGCGACAGCAGGATCGACAAC
ACACTGAGGGGGACCCGACCAATCACCGACTTGAGCATCCTGCCCCTCTGGCCAGCTGAGTGCCC
GCACACTCATTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGA
CCAAGGGTTACGGGTGCACATGCTGGGCTTGATCATGTGTTAGTGTCGCATTTTTTTTCATCGGA
GCATCGCCAGAGAACCTGACCGAC
Found at i:26558 original size:26 final size:26
Alignment explanation
Indices: 26521--26573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26511 GCTGACTTAG
*
26521 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
26547 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
26573 G
1 G
26574 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:27004 original size:899 final size:892
Alignment explanation
Indices: 25659--34995 Score: 11069
Period size: 891 Copynumber: 10.5 Consensus size: 892
25649 GTTGGCTTAG
* * * *
25659 GCATAC-AGAGTTCATTCCCAGTCAAAGATCGGACCGGATCGAGTGTTGCGGGTGCACATACTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGG
* * *
25723 GCTCGGGCATGTGCTGGTACCACATTTTTTTTTGCCCAGGGCACCA--TC-A-C--CG-GAGAAC
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCTCGAGCATCGCGAGAAC
* ** * *
25781 TTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGC
130 CTGACCGGCGGCATTGGGGTTCCGACGAT--TGGGGGCC--GGGGGGTGTGCGCACATGATGTGC
* *
25846 G-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACA
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
25910 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
25975 GGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAATTTTTAGCTGAATTTTTTTGT
321 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
26040 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTCTTTCTGAAAAAA
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * *
26105 TTTTAAAGAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTG-AAAA-A-AAAATGAGTCGTCTT
451 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
26167 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *** *
26232 TTGGCACAGCATAAATATGAAGATGTGCCAAAAAAAACCTACCACCCTATCGATCAACGGCTTGC
581 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
26297 GCATCCCACCTCTCTGGCCGACGTAGAGCCCGTCTGCCCGCCCGCTCGTTTCATCGATTGCCTTA
646 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCG-C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * **
26362 GGCAAACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCAAGGGTTACGGTAGTAGGATTGAT
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGGC
* * ** * *
26427 AGCACACAGAAGGGGACCTAACCGATCCCTGGATTGCGCATCCTGGCCCTCTGGCCAGCTGAGGC
774 AGCACGCTGAAGGGGACCCGACCGATCCCTGGATTGCGCATCCTGCCCCTCTGGCCGGCTGA-GC
* * * *
26492 CCCCGCACTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
838 CCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
26547 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
26612 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGGCCGGGGCACCATCGTCAGAGCATCGTCGAAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATC-TC-GAGCATCG-CG-AG
* * * * * * *
26677 AACCTGATCGGTGGCGTTGGGGTTCTGGCGATTGAGGGCGATCGAGGGGTGTGCGCACATGATGT
127 AACCTGACCGGCGGCATTGGGGTTCCGACGATTG-GGG-G-CCGGGGGGTGTGCGCACATGATGT
26742 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
26807 CACCCCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
26872 TGGGGACACTTTTTTCAAATGGTCACAAAGTCCTGTACACTTCAAGTTTTTACCTAAATTGTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
26937 GTGCATGCCAACCAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAA
384 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
27002 AATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
449 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
27067 TTGCCATGAAACTTCACATGATGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
27132 CATTGGCATGGCAGAAATATGAAGATGTGTCC-AAACCCACCTACCACCCTATCGATCCAAGGCT
579 CATTGGCATGGCAGAAATATGAAGATGTG-CCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** * *
27196 TGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCTGCCAGCCTACCCGCTCGTTTCATCGATTGGC
643 TGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG-C-GCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * * * *
27261 TTAGGAAAACGGAGTTTATTCCCAGTCTAAGATCATACCAGATCGAGGGTTGTGGCAGCAAGATT
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATC
** * * * * * *
27326 GATAGCACACAGAAGGGGACCCGACCGATCCCTAGATTGTGGATCCTGCCCCTCTGGCCAGCTGA
771 GGCAGCACGCTGAAGGGGACCCGACCGATCCCTGGATTGCGCATCCTGCCCCTCTGGCCGGCTGA
** * * *
27391 GGCCCGTACGCTCGTTTTGTGGGTCGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
836 -GCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
27449 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAGTGAACCAAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
27514 CTTGGGCATGTGCTAGTGCCACATTTTTTTTCG-CCTGGG--CCATCATC-A-C--CG-GAGAAC
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATC-TCGAGCATCGCGAGAAC
* * * * *
27571 CTGACCGGTGGCATTAGGGTTTCGACGATTAGGGGGGCCGAGGGGGTGCGCGCCCATGATGTGCG
130 CTGACCGGCGGCATTGGGGTTCCGACGATT--GGGGGCCG-GGGGGTGTGCGCACATGATGTGCG
* * * * * * *
27636 GTGGGTGGTGGCACTTGGCCCCTATATTGGCCCCCTATCCCTCATGAAACCTTGAGAACTGACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
27701 CCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
27766 GGGCACATTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
27831 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCGAAAACTCCTACTGAAAAAAT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * *
27896 TTTAAAGAAATC-CGAACCTTAAAAAGTTTTCAAAAAAATCGTGAAAAATAGAAAATGAGTCATT
452 TTTAAAAAAATCTCGAACCGTAAAAAG-TTTC--AAAAATCGTGAAAAATAGAAAACGAGTC-GT
*
27960 CTTGCCATGAAACTTCACCATGAACGCTTAAGGGACCATTGTAATGAATTTAC-AGCCATAAAAA
513 CTTGCCATGAAACTTCA-CATGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAAA
* *
28024 TGGCATTGGCAT-GCAAAAAATATGAAGATGTGCCTAAACCCAACCTACCACCCTATCGATGCAC
576 TGGCATTGGCATGGC-AGAAATATGAAGATGTGCCTAAACCC-ACCTACCACCCTATCGATCCAC
* * * *
28088 GGCTTGCGCATCCCACCTCTCTGGCCGACATAGTGCCCGCCCACCCGCCTGCTCGTTTCGTCGGT
639 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG--CGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
28153 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGAGCAGA-CTGAGGGTTGCGATAGCA
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGTAGCA
* ** * * * * * * *
28217 GGGTCGATAGCACACAG-AGGAAGACCCGATCGAT-CCTCGGCTTGCTG-ATCTTGCCTCTCTGG
766 GGATCGGCAGCACGCTGAAGG-GGACCCGACCGATCCCT-GGATTGC-GCATCCTGCCCCTCTGG
* * * * * *
28279 CCTGCTGAATGCCCGCACGCTCATTTCGTTGGTTCACTTAGGCATACGGAGTTCATTCCAAGTCT
828 CCGGCTG-A-GCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
28344 AA
891 AA
* *
28346 G-AT-C--AG---A-T--C-G-----GATC-GA---G--C----GTTGTGGGTGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
28385 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCAGGCCACCATCACTGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCAT--CTCGAGCATC-GC-GAG
* * * * * **
28450 AACCTGACCGACGGCATTGAGGTTCCGACGATTGGGGGGCAGGGGGTGTGTGCACATGATGTATG
127 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
28515 ATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAATTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
28580 CCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
28645 GGATACTTTTTTTCACATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGT
322 GGACAC-TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* **
28710 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTGATTCTGAAAAAA
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
** * * * *
28775 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAACATAAAAAATGAGTCGTCCT
451 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
28840 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
28905 CTGGCATGGTAGAAGTATGAAGATTTGCCTATACCCACCTACCACCCTATCGATCCACGGCTTGC
581 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
28970 GCATCCTGCCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTT
646 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCG--CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
29035 GGCAAACGGAGTTCATTCCAAGTCTAAGACCAGACCGGACCGAGGGTTGAGGCT-GCAGGATCGG
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGG-TAGCAGGATCGG
* * * ** * * * *
29099 CAGCATGTTGAGGGGGACCCGGTCGATCCC-CGACTTGCGCATCCTACCCCTCTAGCCAGCTGAT
773 CAGCACGCTGAAGGGGACCCGACCGATCCCTGGA-TTGCGCATCCTGCCCCTCTGGCCGGCTGA-
** * *
29163 CGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAA
836 -GCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
29221 GCATAC-AGAGTTCATTTCCAGTCTAAGATCGGACCGAATCAAGGGTTGCAGGTGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGG
* * *
29285 GCTCGGGCATTTGCTGGTGCCACATTTTTTTT-GCCCAGGGTACCA--TC--G--TCG-GAGAAC
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCTCGAGCATCGCGAGAAC
*
29342 CTGACCGGCGGCATTGGGGTTCCGACGATT---GG--GGGGGGTGTGCGCACATGATGTGTGATG
130 CTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
29402 AGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTC-ATGAACTCACATCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCC
* * * *
29466 TCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGTG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
29531 ACACTTTTTTCAAATGGTCACAAAATCCTGTACGCTTTGAGTTTTTTGCTGAATTTTTTTGTGCT
324 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
29596 TGCCAAAAAAAATACAAGGATCAAGTCTACAAAGTTT-GGGCCAAAACTCTTTCAGAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* *
29660 TAAAAAAATCTCGCACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCC
454 TAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
29725 ATGAAACTTCACATGAAGGCTTAAGGGACCATTTTCTGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
29790 GCATGGCCGAAATATGAAGATGTGCCTAAACCCACTTACCAACCTATCGATCCACGGCTTGCGCA
584 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
29855 TCCCACCTCGCTGGCCGACGTAGTG--CGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
649 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
29918 ACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCTGCAGCAGGATCGGTAGCA
714 ACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCGGTAGCAGGATCGGCAGCA
* * ** * * * *
29982 CCCTG-AGAGGGACCCGACCAAT-CCTCAACTTGCTCATCCTACCCCTCTGGTCGACTGAACGCC
778 CGCTGAAG-GGGACCCGACCGATCCCTGGA-TTGCGCATCCTGCCCCTCTGGCCGGCTG-A-GCC
** *
30045 CGTACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TCATT-CCAGTCTAA
839 CCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
30097 G-ATA-GGAGTTTCATT-CCAGTCTAAGATCGAACCAGACCGAGGGTTACGGGTGCATATGCTGG
1 GCATACGAAG-TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGG
* *** *
30159 CCTCGGGCATGGTGCTGGTGTGGCATTTTTTTTTCGCCCGGGACACGC-TCGTCGGAAGCATCGC
65 GCTCGGGCAT-GTGCTGGTGCCACA-TTTTTTTTCGCCCGGGGCAC-CATC-TC-G-AGCATCG-
* * * * * * *
30223 CAGAGAACCCG-TCGAC-GCATTGGTGTTCCGGC-AATGGGGGTCGGGGGGTGTGCGCACATGAT
123 C-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGCCGGGGGGTGTGCGCACATGAT
* ** *
30285 GTGCCGATGGGTGCTAGTACTTGGCCCTTATATCAGCCCCCTAT-CCTCATCAAACCTCGAG-AG
187 GTG-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
30348 TCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTTGCCTACCAAGTAGCCATTAAATTGT
251 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTG-CTGCC-AGTAGCCATTAAAGTGT
30412 CTGAAATGGGGAC-CTATTTTTCAAATGGTCACAAAATCCTGTACAC-TCGAGTTTTTAGGCTGA
313 CTGAAATGGGGACACT-TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA-GCTGA
* * * *
30475 ACTTTTTTGTGCAGGCCCACAAAAAGTAGAAGGATCACGTCCTACCAAG-TTGGGGCCAAAACTC
376 ATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGT-CTACCAAGTTTGGGGCCAAAACTC
* * *
30539 C-TCTGAAAAAA-TTT-AAAAAATC-CCAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
439 CTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * *
30600 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTCAGGGGACCACTGTATGAATTTACAACCC
504 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
30665 ATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGGCTAAATCCACCTACCACCCTATCGA
569 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
*
30730 TCCACGGCTTGTGCATCCCGCCTCTCTGGCC-AGCGTAGTG-CC-CGCCCGCCCGCTCGTTTCGT
634 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGTGCCCGCGCCCGCCCGCTCGTTTCGT
* * * * ** *
30792 CAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTGGAAGCA
698 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTA
* * * * * *
30857 GTAGGATCGGTAGCACG-TAGAGGGGGACCCGACCGCTGCCC--GACTTTCGCATCCCGCCCCAT
763 GCAGGATCGGCAGCACGCT-GAAGGGGACCCGACCGAT-CCCTGGA-TTGCGCATCCTGCCCC-T
*
30919 -TGGCCGGCTGAGCGCCCACACGCTCG-TTCTGTGGGTTGACTTA-GCTATACGGAGTTCATTTC
824 CTGGCCGGCTGAGC-CCC-CACGCTCGTTTC-GTGGGTTGACTTAGGC-ATACGGAGTTCATTCC
30981 CAGTCTAA
885 CAGTCTAA
* * * *
30989 GCATA-TAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGGTTGCGGGTGCATATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGG
* * * * ** * *
31053 GCTCGGGTATGTGCTGGTGTCACCTTTTTTTTTGCTTGGGCCACCATCGCCGGAGCATCGCCAGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATC-TC-GAGCATCG-C-GA
* * *
31118 CAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCAAGGGGGTGTGTGCACACATGATG
126 GAACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGC-CGGGGG-GTGTGCGCACATGATG
* *
31183 TGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTC
188 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
31248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGA
253 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
31313 ATGGGGACACTTTGTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
318 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
31377 TGTGCATGCAAACAAAAATACAAGGATCACGCCTACCAAGTTTGGTGCCAAAACTCCTTCTGAAA
383 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* *
31442 AAATTTTAAAAAAATCTCGGACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
448 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
31507 CTTGCCATTAAACTTCACATGAAGGCTTAAGGGACCGTTGTTTGAATTTACAAGCCATAAAAATG
513 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
31572 TCATTGGCACGGTAGAAATATGAACATGTGCAC-AAACCCACCTACCACCCTATCGAGCCACGAC
578 GCATTGGCATGGCAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
31636 TTGCGCTTCCCGCCTCCCTAGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGG
642 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG-C-GCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** * * * *
31701 CTGAGGCATACGGAGTTCATTCCTAGTCTAATATTGGACCGCACCGAGGGTTGCGGCAACAGGAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGAT
* * ** * * *
31766 TGGCAGCACGCTG-AGAGGGACCCGATCGAT-TTTCGGCTTGCGCATCCTACCCCTCTGGCCGGT
770 CGGCAGCACGCTGAAG-GGGACCCGACCGATCCCT-GGATTGCGCATCCTGCCCCTCTGGCCGGC
*
31829 TGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 TGAGC-CCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
31891 GCATA-TAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATACTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGG
* *** * * *
31955 GCTCGGGCATATGCTGGTGCTGTATTTTTTTTTGCCCCGGGCACCA--T----CATCG-AAGAAC
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCTCGAGCATCGCGAGAAC
* * * ** * **
32013 CTGACTGGCGGCATTGGGTTTTCGGTGATTCGGGGGGGCC-GGGGGTGTACGCACATGATGTATG
130 CTGACCGGCGGCATTGGGGTTCCGACGATT---GGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
32077 ATGGGTACTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
32142 CCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
32207 CGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * ***
32272 CATGCCAAAAAAAATACTAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAATTTT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * * * * * * **
32337 TTTTAAAAAATGTCGAATCATAAAAAGTTTTAAAAATCATTAAAAATAGAAAACGAGTCATCCGG
452 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
32402 CCATGAAACTTGACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAAGGGCAT
517 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
32467 TGGGATGGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
32532 CATCCCGCCTCTCTGGCCGACGTAGTGCCTGGCCGCCCACCCGTTCATTTCATCGGTTGGCTTAG
647 CATCCCGCCTCTCTGGCCGACGTAGTGCC-CG-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
32597 GTATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCGATAGCAGGATTGGCA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * ** * *
32662 ACACGTTG-AGAGAGACCCGGCCAATCCCCAGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCG
775 GCACGCTGAAG-GGGACCCGACCGATCCCTGGATTGCGCATCCTGCCCCTCTGGCCGGCTGAGC-
* *
32726 CCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** ** ** **
32782 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCAAGCACACATGCTACG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
32847 CTCGGGCATGTGCTGGTG-CAGCATTTTTTTACGCCTGGGGCACCA--TC--G--TC-AGAGAAC
66 CTCGGGCATGTGCTGGTGCCA-CATTTTTTTTCGCCCGGGGCACCATCTCGAGCATCGCGAGAAC
* **
32904 CTGACCGACGGCATTGGGGTTCCGACGATTGAGGGGTGGGGGGGTGTGCGCACATGATGTGCGAT
130 CTGACCGGCGGCATTGGGGTTCCGACGATTG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * ** *
32969 GGCTGCTGGTACTTGGCCCTTATATTCGTCCCCTATCCCTCATCAAATGTTGAGAACTCACA-CC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * * *
33033 CTTTAAAGACCATTTGAGATTTTACAGGTTCGCTACCAGTAGCCATTAAAGAGTCTGAAGTGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
33098 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTGTTTAGCTGAATTTTTTTGTTCA
324 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * *
33163 TGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTAGGGCCAAAACTCCTTCTAAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* * * * ** *
33228 AAAAAAAATCCCGAACCATAAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
454 TAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
33293 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
33358 GCATGGCAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACCGCTTGCGCA
584 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * * * *
33423 TCCCGTCTCTCTGACCAACGCAGTGTCCGCTCGTCCGCCCGATCGTTCCGTCGGTTGGCTTAAGC
649 TCCCGCCTCTCTGGCCGACGTAGTG-CC-CGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
33488 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGCATCAAAGGTTGCAGTAGCAAGATCGGCAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGGCAGC
* * * * * * ***
33553 ACGCTGATA-GGGACCCGACTGATCCCCGGCTTACGTATCCTGCCCCTCTAGCCGGCTGAGGGAT
777 ACGCTGA-AGGGGACCCGACCGATCCCTGGATTGCGCATCCTGCCCCTCTGGCCGGCTGA-GCCC
* *
33617 GCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
33670 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGGTGCACATACTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
33735 CTCGGGCATGTGCTGGTGCCACATTTTTTTGCGCCCGGGGCAGCATCGTCAGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATC-TC-GAGCATCG-C-GAG
* * * * * * *
33800 AACTTGATCGGTGGCATTGGGGTTCCAACAATTAGGGGGCGGGGGGGTATGCGCACATGATGTGC
127 AACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
33865 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGACAACTCAGA
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
33930 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTACCAGTAGCCATTAAAGTGTTTGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
33994 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTATTAGCTCAATATTTTTAT
321 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
34059 GCACGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTAGGGCCAAAACTCCTTCTAAAAAAA
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * * * * * *
34124 TTTTTAAAAAATCCCAAACCATAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGGGTCGTCTT
451 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
34189 GCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
**** * **
34254 TTGGCACAATAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACCACTTGC
581 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
34319 GCATCACGCCTCTCTGGCCGACGTAGT-TCC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
646 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * * *
34382 CATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGTAACAGGATCGCCAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGGCAG
* * * * * * **
34447 CACACTGAGGGGGACCCGGCTGATCCCTGGCTTGCGCATCCTGCCCCTCTAGCCGATTGAGCACC
776 CACGCTGAAGGGGACCCGACCGATCCCTGGATTGCGCATCCTGCCCCTCTGGCCGGCTGAGC-CC
* * * * *
34512 CGCACACTCGTTTCATGGGTTGACTTAGGCATGCGAAGTTCATTCGCAGTCTAA
840 C-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
34566 GCATATGGAGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGCGAGTGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
34631 CTCGAGCATGTGGTGGTG-CACTTTTTTTTTGGCCCGGGGCACCATCACCGCAGCATCACCG-GA
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATC-TCG-AGCATC-GCGAGA
* * *
34694 TATCCTGACTGACAGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTG
128 -A-CCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGCCGGGGGGTGTGCGCACATGATGTG
*
34759 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
34824 ACCCCCTTAAAGAGCATTTGAGATTTGACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
34889 GGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACATCGAGTTTTTAGCTGAATTTTTTTA
320 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
34954 TGCATGCCCACAAAAATTCATGGATCACGTCTACCAAGTTTG
385 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
34996 CGGCAGTAGG
Statistics
Matches: 7293, Mismatches: 944, Indels: 416
0.84 0.11 0.05
Matches are distributed among these distances:
871 49 0.01
872 4 0.00
874 57 0.01
875 257 0.04
876 94 0.01
877 37 0.01
878 192 0.03
879 147 0.02
880 141 0.02
881 17 0.00
882 254 0.03
883 90 0.01
884 145 0.02
885 1 0.00
886 9 0.00
887 15 0.00
888 243 0.03
889 589 0.08
890 635 0.09
891 992 0.14
892 168 0.02
893 105 0.01
894 136 0.02
895 388 0.05
896 572 0.08
897 116 0.02
898 220 0.03
899 843 0.12
900 17 0.00
901 56 0.01
902 695 0.10
903 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCTCGAGCATCGCGAGAACC
TGACCGGCGGCATTGGGGTTCCGACGATTGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGCCTCTCTGGCCGACGTAGTGCCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
TGAAGGGGACCCGACCGATCCCTGGATTGCGCATCCTGCCCCTCTGGCCGGCTGAGCCCCCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:27459 original size:26 final size:26
Alignment explanation
Indices: 27423--27483 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
27413 GTCGACTTAG
*
27423 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27449 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27475 G-AT-CGGAGT
1 GCATACGGAGT
27484 GAACCAAGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 6 0.18
25 2 0.06
26 26 0.76
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29224 original size:26 final size:26
Alignment explanation
Indices: 29195--29247 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29185 GTTGACTTAG
* *
29195 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
29221 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29247 G
1 G
29248 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31894 original size:26 final size:26
Alignment explanation
Indices: 31865--31917 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31855 GTTGACTTAG
*
31865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
31891 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31917 G
1 G
31918 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32792 original size:26 final size:26
Alignment explanation
Indices: 32756--32808 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
32746 GTTGAATTAG
32756 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32808 G
1 G
32809 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33680 original size:26 final size:26
Alignment explanation
Indices: 33644--33696 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33634 GTTGACTTAG
*
33644 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
33670 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
33696 G
1 G
33697 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:37409 original size:876 final size:873
Alignment explanation
Indices: 34997--43835 Score: 10230
Period size: 875 Copynumber: 10.1 Consensus size: 873
34987 CCAAGTTTGC
* * * *
34997 GGCAGTAGGATC-GACAGCACGCTGAGGGGGACCCAGTCGATCCCCGGTTTGCTCATCCTGCCCC
1 GGCAGCAGGATCGGA-AGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCC
* * *
35061 TCTGGCCGGTTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCC
65 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * * **
35126 AGTCTAAGATCGGACCAGTCCGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGC
129 AGTCTAAGATCAGATCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGC
* * ** * * * * * *
35191 CATAACTTTTTTTGCCCAGGGAACTATCACCGGAGCAACGTTGGAGAACCTGGCTGGCGGCATTG
194 CA-CATTTTTTTTG-CTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTG
* * * * * *
35256 GGGTTCTGACGATTGGGGAGG-CTGGGGGGTGTGCGCATATGATGTGTGATGGGCGCTGGTACTT
257 GGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
*
35320 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCCTAAAGAGCATT
322 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
35385 TGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
387 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
35450 TGGTCACAAAATCCTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATACGAACAAAAATA
452 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * ** * * *
35515 CAATGATCACGTCTACCAAGTTAGGGAACAAAACTCCATCTGAAATAATTTTAAAAAAATCCAGA
517 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT-CTGA
* ** *
35580 ACCGTAAAAAGTTTTAAAAATATTGAAAAATTA-AAAACGAGTCGTCTAGCCATGAAACTTCACA
581 ACCGTAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* *
35644 TGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAAT
645 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
** * * *
35709 ATGAATTTGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTCGCCTCTCTG
710 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
** * * * *
35774 GTTGGCGTAGTG-CTCGCCCACCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
775 GCCGACGTAGTGCCT-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
35838 TTCCCATTCTAAGTTCAGATCAGACCGA-GGTTGC
839 TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGT
* * * ** *
35872 GGCAGCAAGATC-GACAGCATGCTGAGGGGGACCAGGTCGATCGTCGGCTTGCACATCCTGCCCC
1 GGCAGCAGGATCGGA-AGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCC
* *
35936 TTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCC
65 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCC
* ** * ** * * **
36001 AGTCTAAGATCGGATCGGATGGAAGGTTGTGGGTGGACATGCTGGGCTTAGGCACATGCTGGTGC
129 AGTCTAAGATCAGATCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGC
* * * * * * ***
36066 CACATTTTTTTTTGCCCGAGGCACCATCGTCGGAGTATCGTCGAAGATCCTGA-TCGGTAACATT
194 CACA-TTTTTTTTG-CTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACT-GGCGGCATT
* * * * * *
36130 GGGGTTCCGACGATT-GGGGGGCCGGGGGGGTATGCACATATGATGTGCGATGGGTGATGGTACT
256 GGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
*
36194 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
321 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
36259 TTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
386 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
36324 ATGGTCGCAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAAT
451 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
* * * ** * ** * *
36389 ACAAGGATCATGTCTACCAAGTTTGGAGCCAAAAATCCTAATGAAAAATTTTTTTAAGAATCCCG
516 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT-CTG
*
36454 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACA
580 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* * * *
36519 TGAAGGCTTAAGGGACCATTGTATGACA-TTAAAAGCCATAAAATTGGCATTGGCACGGCAAAAA
645 TGAAGGCTTAAGGGACCATTGTATGA-ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* *
36583 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGCCTCTCT
709 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * *
36648 GGCCGACGTGGTGCCTGCCCACCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCA
774 GGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
**
36713 TTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGT
839 TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGT
* * * * * * **
36748 GGCAGCACGATCGGAAGCACGCTGAGGGGGACACGGTCGATCCCCGACGTGCTCATCCTACCTTT
1 GGCAGCAGGATCGGAAGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCT
* *
36813 CTGGCCGGTTGAGCGCCCGCACGCTCGTTTTGTGGTTGACTTAGGCATACGGAGTTCATTCCCAG
66 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
36878 TCTAAGATCAGATCGGACCGGGGGTTGCAGGTGCACATGCTGGTCTCAGGCATGTGCTGGTGCCA
131 TCTAAGATCAGATCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCA
* * * * * * *
36943 TATTTTTTTTTGCATGGGGCACCACCGCCGGAGCATCGTCGGAGAACCTAACTGGTGACATTTGC
196 CA-TTTTTTTTGC-TGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGG
* *
37008 GTTCCGGTGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGA
259 GTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG
* *
37073 CGCTTAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
324 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
37138 AGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATG
389 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
37202 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTTTGCATGCCAAAAAAAAT
454 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA---TTTTTTTGTGCATGCCAAAAAAAAT
* *
37267 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAA-ATAAAAAAAATCTGA
516 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTG-
*
37330 AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
580 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
37395 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAT-GCAGAAA
645 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ATGGCAGAAA
* * * *
37459 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCACATCACGCCTCTTT
709 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
** * *
37524 GGCCGGTGTAGTGTCTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
774 GGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * *
37589 TTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGC
839 TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGT
* * * * * *
37624 AGCAGCAGGATCGGCAGCACGCTGTGGGGGACCCGGCCAATCCCCGGCTTGCGCTTCCTGCCCCT
1 GGCAGCAGGATCGGAAGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCT
* *
37689 CTGGCCGG-TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
66 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
37753 GTCTAAGATCGGATCAGATCGAGGGTTACGGGTGCACATGCTGGGCT-AGGGCATGTGCTGGTGC
130 GTCTAAGATCAGATCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCA-GGCATGTGCTGGTGC
** * * * * ** ** *
37817 TGCATTTTTTTCGCCTGAGGCACCATCGCCAGAGCATTGTTAGAGAACCTGACCAGCGGCATTAG
194 CACATTTTTTTTG-CTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGG
**
37882 GGTTCCAACGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
258 GGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
* * *
37946 GCCCTCATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTT
323 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
** * *
38011 GAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAAT
388 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
38076 GGTCACAAAATCCTGTACACTTGGAGTTTTTAGCAGAATTTATTTGTGCATGCCAAAAAAAATAC
453 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* *
38141 AAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAAATCTCGAA
518 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT-GAA
* * *
38206 CAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACATG
582 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
* *
38271 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACGGCAGAAATAT
647 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATAT
* * *
38336 GAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGATTGCGCATCCCGCCTCTATGGC
712 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC
* * * * *
38401 CGGCGTAGTGCCCGCCCGCCCGCCAGCTCGTTTTGTCGTTTGGCTTAGGCATACGGAGTTCATTC
777 CGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** **
38466 CCAGTCTAAGATCGGACCGGACCAAGGGTTAC
842 CCAGTCTAAGATCAGACCGGACTGAGGGTTGT
* * * ** * * * * *
38498 GGTAGCTGGATCGGTAGTGCACTGAGGAGGACCCGGCCGATCCCCGGCTTGTGCAACCTGCCCCT
1 GGCAGCAGGATCGGAAGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCT
* * ** * **
38563 CTGGTCGGCTGAACGCCTACACGCTCGTTTCATGGGTTGACTTATTCATACGGAGTTCATTCCCA
66 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * *
38628 GTCTAAGATCGGACCGAACTGAGGGTTATGGGTGCAAATGCTGGGCTCGGGCATTTGCTGGTACC
130 GTCTAAGATCAGATCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCC
** ** * * **
38693 GTA-TTTTTTTGCCCGGGCA-C-T------A-TA-CG--AGAGAAGTTG-C-GGACGGCATTGGG
195 ACATTTTTTTTGCTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGG-CGGCATTGGG
* * *
38743 GTTCCAGCGATTGGTGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
259 GTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG
* * * *
38806 TCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTG
324 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
38871 AGATTTTATAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATG
389 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
38936 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACA
454 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * *
39001 AGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCTGAAAAAAATTAAAAAAAATTCCCGAA
519 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA-T-CTGAA
* * *
39066 TCGTAAAAAGTTTCAAAAATCATGAAAACTAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
582 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
*
39131 AAGGCTTAATGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATAT
647 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATAT
* * * *
39195 CAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCACCTCTTTGGC
712 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC
* * * *
39260 CGACGTAGTGACC-GCCTGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATT
777 CGACGTAGTG-CCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* *
39324 CCCAGTCTAAGATCAGACTGAACTGAGGGTTGT
841 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGT
* * ** * * *
39357 GGCAGCA-GATTCGGCAGCACACTGAGGGGGACCCGACCGATCCTCGACTTACGCATCCTG-CCC
1 GGCAGCAGGA-TCGGAAGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCC
* * * * *
39420 TCTGGCTGGTTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCC
65 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCC
* *** * * * * **
39485 AGTCTAAGCATACGAAGTTCATTCCCA--GTCTA-AGAT-CAAAT-C--GAATC--G-ATAGTTG
129 AGTCTAAG-AT-C--AGATCGGACCGAGGGT-TACGGGTGCACATGCTGGGCTCAGGCAT-G-TG
* * * * * *
39540 CAGGT-ACACA-------TGCT-GGG---C-TCG--GGCACCATCATCGGAGAACCTGACCGACG
187 CTGGTGCCACATTTTTTTTGCTGGGGCACCATCGCCGG-AGCATCGTCGGAGAACCTGACTGGCG
* * ** * *
39590 ACATTGGCGTTCCGATGATT-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTG
251 GCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
39654 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
316 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* **
39719 AGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCATCTGAAATGGGGACACTTTT
381 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
39784 TT-AAATGGTCACAAAATCCTGTACACTTCGAGTGTTTAGTTGAATTTTTTTGTGCATGCCAACA
446 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * *
39848 AAAATACAAGGATCACCTCTCCCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAACTTTAAAAAAA
511 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* *
39913 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACT
576 TCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
39978 TGATATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTA
640 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* * *
40043 GGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGCCT
705 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* * ** ** * * * *
40108 CTCTAGCTGACGTAGTGCCCACCCTTCTGCCCGCTCGTTTCGTCGGTTGGTTTAGGCGTACAGAG
770 CTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
**
40173 TTCATTCCCTA-TCTAAGATCAGTTCGGACTGAGGGTTGT
835 TTCATTCCC-AGTCTAAGATCAGACCGGACTGAGGGTTGT
** * * ** * *
40212 CACAGCAGGATCAGCAGCACGCACAGAGGGACCCGGTCGATCTCCGGCTTGCGCATCCTGCCCCT
1 GGCAGCAGGATCGGAAGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCT
* * ** *
40277 CTGGCTGGCTAAGCGCCCATACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCA
66 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
40342 GTCTAAGATCAGACCAGACCGAGGGTTACAGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCT
130 GTCTAAGATCAGATCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGC-
* * * * * **
40407 GA-TTTTTTTTCTCCTGGGCCACCATCGCCGGAGCTTCACCGGAGAACCTGA-TCGGCGGCATTG
194 CACATTTTTTT-TGCTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACT-GGCGGCATTG
* *
40470 GGGTTCCGACGATTGGGGTGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
257 GGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
* ** * * *
40535 GACCCTTATATTGGCCCTGTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGACCATT
322 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
40600 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
387 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
40665 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCC-AAAAAAAT
452 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAAT
* * ** * *
40729 ACGAGGATCATGTCTAAAAAGTTTGGGGCCAAAATTCCTTTTGAAAAAATTTTAAAAAAATCTCG
516 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT-G
* * *
40794 AACCGTAAAAAGTTTCAAAAATCATGACAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACA
580 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
*
40859 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
645 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
40924 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
710 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * ** * * **
40989 GCC-AGCGTAGTGCCCGCCTGCCCGCTTGCTTGTTTCATCGGTTGAATTAGGCATACGGAGTTCA
775 GCCGA-CGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** *
41053 TTCCCAGTCTAAGGTTGGACTGGACTGAGGGTTGT
839 TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGT
* * * * * * *
41088 GGTAGTAGGATCGGTAGCACG-TAAAAGGGGACCTGGCCGATCCCCAGG-TTGCGCATCCTGCCC
1 GGCAGCAGGATCGGAAGCACGCT-GAGGGGGACCCGGTCGATCCCC-GGCTTGCGCATCCTGCCC
** **
41151 CTCTGGCCGGCTGAGCGCTTGCACTTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
64 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCC
41216 CAGTCTAAGCATATGCAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTACGGGTGCAC
128 CAGTCTAAG---AT-CAG---------A-TC---G----G-----ACCGAGGGTTACGGGTGCAC
* ** * * *
41281 ATGCTGGGCTCAGGCATATGCTGGTATCACATTCTTTTT-C-----CACC--CG-AGGCACCATC
167 ATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTGCTGGGGCACCATCGCCGG-AGCATC
* * * * *
41337 GTCGAAGAACCTGA-TCGACGGCATTAGGGTTCCAGCGATTGGGGGGGCGGGGGGAGGGGTGTGC
231 GTCGGAGAACCTGACT-GGCGGCATTGGGGTTCCGGCGATTGGGGGGGC--CGGG-GGGGTGTGC
* * *
41401 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCACTCATCAAACC
292 GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* ** * *
41466 TCGAGAAATCATGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCCTTAA
357 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
41531 AGTGTCTGAAATGGGAACACATTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGC
422 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* * *
41596 TGAACTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTCCCAAGTTTGGTGCCAAAACT
487 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
41661 CCTTCTGAAAAAACTTTAAAAAAATCTCGAACCGTAAAAAGTTT-GAAAATCGTGAAAAATAGAA
552 CCTTCTGAAAAAATTTTAAAAAAATCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * *
41725 AACGATTCGTCTTTCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTAAGAATTTACAAGC
616 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
41790 CATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCT
681 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * * *
41855 ATCCACGGCTTGTGCGTCCCGCCTCTCTGGCCGACTTAATGCCCGCCCGCCTGCCCGTTCGTTTC
746 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTC
* * * ** * *
41920 GTCAGTTGGCTTGGGCATACGGAATTCATTCCCAGTCTAAGATTGGACCGGACTAAGGGTTAT
811 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGT
* * * **
41983 TGCAGCAGGATCGAAAGCACGCAGAGGGGGACCTAGTCGATCCCCGGCTTGCGCATCCTGCCCCT
1 GGCAGCAGGATCGGAAGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCT
* * * * *
42048 TTAGTCGGCTGAGCACCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATATGGAGTTCATTCCCA
66 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG-TGGTTGACTTAGGCATACGGAGTTCATTCCCA
42113 GTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGAGTTACGGGTGCACAT
130 GTCT----A-----AG---------A-TC--AGATCGGACC-GA--G-G-GTTACGGGTGCACAT
* * * * * * * *
42178 GCTGGGTTCGGGCATGTGCTAGTGCCGCAGCTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCA
169 GCTGGGCTCAGGCATGTGCTGGTGCCACA-TTTTTTTTGCT-GGGGCACCATCGCCGGAGCATCG
* * * * * ** *
42243 TCGGAAAACCTGACCATCGG-AGCATTAGGGTTCTGGCGATT-AGGGGGCCCAGGGGGTGTGTGC
232 TCGGAGAACCTGA-C-T-GGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGC
* * *
42306 ACATGACGTGTGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
294 ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
42371 GAGAACTCACA-CCCCTATAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAA
359 GAGAACTCACACCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
** * ** * *
42435 GTGTCCAAAATGGGGACACTTTTTTCCAATGACCACAAAATCCTGTACACTTCAAATTTTTA-CA
423 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC-
* *
42499 AGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAG-TTGGGGCCAAAACT
487 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
42562 CCTTCTAAAAAAATTTTAAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAATTAGAA
552 CCTTCTGAAAAAATTTTAAAAAAAT-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * *
42627 AACGAGTCATCTTACCATGAAACTTCAGAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
616 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
42692 CATAAAAATGGCATTGGCATGGCATAAATATGAAGAGGTGCCTAAACCCACCAACCACCCTATCG
681 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
42757 AAT-CATGGCTTGCGCACCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCCCCCCGCCCGCTCGTT
746 -ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCTG-CCCGCCCGCCCGCTCGTT
* * **
42821 TCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTCA
809 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTG
42885 T
873 T
* * * * * * * * *
42886 GGTAGTAGGAT-TGATAGGACACAGAGGGGGACCCGATTGATCCCCGGCTTGCGCATCTTGCCCC
1 GGCAGCAGGATCGGA-AGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCC
* * * *
42950 TCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGCATACGGAGTTCATCCCC
65 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCC
*
43015 AGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGCTTACAGGTGCACA
129 AG--T---C-TA---AG----------ATC--AGATCGGACC-GA--G-GG-TTACGGGTGCACA
* * * *** * * *
43080 AGATGGCCTC-GAGCATACACTGGTGCCATATTTTTTTT-C----AC-CCA--G--GGCACCATC
168 TGCTGGGCTCAG-GCATGTGCTGGTGCCACATTTTTTTTGCTGGGGCACCATCGCCGG-AGCATC
*
43134 GTCGGAGAACCTGA-TCGGTGGCATTGGGGTTCCGGCGATT-GGGGGG-CGAGGGGGGTGTGCGC
231 GTCGGAGAACCTGACT-GGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCG-GGGGGGTGTGCGC
* * *
43196 ACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTC
294 ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
43261 GACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
359 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
43326 TGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTG
424 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
* *
43391 AATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGC
489 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* ** *
43456 TTCTGAAAAAATTTAAAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAA
554 TTCTGAAAAAATTTTAAAAAAATC-TGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* *
43521 CGAGTTGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
618 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
43586 TAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCATATTGAT
683 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
43651 CCACGGCTTGTGCATCTCGCCTCTCTGGCCGACGT-G-G--TGCCCACCCGCCCGCTCGTTTCGT
748 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGT
* * *
43712 CGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGC
813 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGT
* * * * * * *
43773 GGTAGTAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT-CAACATCCTGCCC
1 GGCAGCAGGATCGGAAGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGC-GCATCCTGCCC
43836 TTCTCGTCGG
Statistics
Matches: 6849, Mismatches: 919, Indels: 380
0.84 0.11 0.05
Matches are distributed among these distances:
845 2 0.00
847 3 0.00
848 3 0.00
850 1 0.00
851 1 0.00
852 8 0.00
853 5 0.00
854 103 0.02
855 370 0.05
856 230 0.03
858 74 0.01
859 509 0.07
860 120 0.02
861 14 0.00
862 4 0.00
863 1 0.00
864 1 0.00
865 1 0.00
868 3 0.00
869 2 0.00
871 1 0.00
872 65 0.01
873 15 0.00
874 543 0.08
875 1344 0.20
876 1138 0.17
877 25 0.00
878 59 0.01
879 2 0.00
880 3 0.00
886 1 0.00
887 125 0.02
888 4 0.00
889 6 0.00
890 208 0.03
891 57 0.01
892 233 0.03
893 48 0.01
894 3 0.00
895 418 0.06
896 278 0.04
897 2 0.00
899 2 0.00
900 1 0.00
901 54 0.01
902 280 0.04
903 414 0.06
904 8 0.00
905 20 0.00
906 8 0.00
907 18 0.00
908 4 0.00
909 1 0.00
910 3 0.00
911 1 0.00
912 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (873 bp):
GGCAGCAGGATCGGAAGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGATCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCA
CATTTTTTTTGCTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGT
TCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTGAACCGT
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGAC
GTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACTGAGGGTTGT
Found at i:42853 original size:903 final size:892
Alignment explanation
Indices: 40322--43835 Score: 4595
Period size: 903 Copynumber: 3.9 Consensus size: 892
40312 GTTAACTTAG
*
40322 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGGTGCACATGCTGGG
* ** * * * * *
40387 CTCGGGCATGTGCTGGTG-CTGATTTTTTTTCTCCTGGGCCACCATCGCCGGAGCTTCACCGGAG
66 CTCGGGCATATGCTGGTGCCACATCTTTTTTCACCCGGGGCACCATCGTC-G-G----A----AG
* * *
40451 AACCTGATCGGCGGCATTGGGGTTCCGACGATTGGGGTGGCCGGGGGGGTGTGCGCACATGATGT
121 AACCTGATCGGCGGCATTAGGGTTCCGGCGATTGGGG-GGCCGAGGGGGTGTGCGCACATGATGT
* * ** * *
40516 GTGATGGGTGCTGGTACTTGACCCTTATATTGGCCCTGTATCCCTCATCAAACCTCAAAAACTCA
185 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
40581 CACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
250 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
40646 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
315 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * * ** * *
40711 TTTGCATGCC-AAAAAAATACGAGGATCATGTCTAAAAAGTTTGGGGCCAAAATTCCTTTTGAAA
379 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* *
40775 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGACAAATAGAAAATGAGTCGT
444 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
40840 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
509 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
40905 GCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
574 GCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * * *
40970 TGCGCATCCCGCCTCTCTGGCC-AGCGTAGTGCCCGCCTGCCCGCTTGCTTGTTTCATCGGTTGA
639 TGCGCATCCCGCCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
41034 ATTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGGACTGGACTGAGGGTTGTGGTAGTAGGAT
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTATGGTAGTAGGAT
* * * * * **
41099 CGGTAGCACGTAAAAGGGGACCTGGCCGATCCCCAGG-TTGCGCATCCTGCCCCTCTGGCCGGCT
768 CGATAGCACGCAGAGGGGGACCCGATCGATCCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGGCT
** **
41163 GAGCGCTTGCACTTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
41224 GCATATGCAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGGTGCACATGCTGGG
* ** * *
41289 CTCAGGCATATGCTGGTATCACATTCTTTTTCCACCCGAGGCACCATCGTC-GAAGAACCTGATC
66 CTCGGGCATATGCTGGTGCCACA-TCTTTTTTCACCCGGGGCACCATCGTCGGAAGAACCTGATC
* * * *
41353 GACGGCATTAGGGTTCCAGCGATTGGGGGGGCGGGGGGAGGGGTGTGCGCACATGATGTGCGATG
130 GGCGGCATTAGGGTTCCGGCGATT-GGGGGGC--CGAG-GGGGTGTGCGCACATGATGTGCGATG
* * * **
41418 GGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCACTCATCAAACCTCGAGAAATCATGCCCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
41483 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCCTTAAAGTGTCTGAAATGGGAA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
41548 CACATTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCAT
321 CACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
41613 GCCAAAAAAAATACAAGGATCACGTCTCCCAAGTTTGGTGCCAAAACTCCTTCTGAAAAAACTTT
386 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
* * * *
41678 AAAAAAATCTCGAACCGTAAAAAGTTT-GAAAATCGTGAAAAATAGAAAACGATTCGTCTTTCCA
451 AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
41742 TGAAACTTCACATGAAGGCTTAAGAGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
41807 CATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGTGCGT
581 CATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
41872 CCCGCCTCTCTGGCCGACTTAATGCCCGCCCGCCTGCCCGTTCGTTTCGTCAGTTGGCTTGGGCA
646 CCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
41937 TACGGAATTCATTCCCAGTCTAAGATTGGACCGGACTAAGGGTTATTGCAGCAGGATCGAAAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTATGGTAGTAGGATCGATAGCA
* * * * *
42002 CGCAGAGGGGGA-CCTAGTCGATCCCCGGCTTGCGCATCCTGCCCCTTTAGTCGGCTGAGCACCC
776 CGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* *
42066 GCACGCTCGTTTCGTTGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
42119 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGAGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGGTGCACATGCTGGG
* * * * * * *
42184 TTCGGGCATGTGCTAGTGCCGCAGCTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCATCGGAA
66 CTCGGGCATATGCTGGTGCCACATCTTTTTTCACCCGGGGCACCATCGTC-G-G-A--A---G--
* * * * * *
42249 AACCTGACCATCGG-AGCATTAGGGTTCTGGCGATTAGGGGGCCCAGGGGGTGTGTGCACATGAC
121 AACCTG---ATCGGCGGCATTAGGGTTCCGGCGATTGGGGGGCCGAGGGGGTGTGCGCACATGAT
* * *
42313 GTGTGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
183 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * **
42378 CACA-CCCCTATAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCCA
248 CACACCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* ** * * * *
42442 AAATGGGGACACTTTTTTCCAATGACCACAAAATCCTGTACACTTCAAATTTTTA-CAAGAA-TT
312 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGC-TGAATTT
* *
42505 TTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAG-TTGGGGCCAAAACTCCTTCTA
376 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* * *
42569 AAAAAATTTTAAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAGT
441 AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * * *
42634 CATCTTACCATGAAACTTCAGAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
506 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
42699 ATGGCATTGGCATGGCATAAATATGAAGAGGTGCCTAAACCCACCAACCACCCTATCGAAT-CAT
571 ATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCAC
* * * *
42763 GGCTTGCGCACCCCGCCTCTCTGGCCGGCGTAGTGCCTGCCCCCCCCGCCCGCTCGTTTCGTCGG
635 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG-CCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
42828 TTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTCATGGTAGTA
699 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTATGGTAGTA
* * * * *
42893 GGATTGATAGGACACAGAGGGGGACCCGATTGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCG
764 GGATCGATAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * *
42958 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGCATACGGAGTTCATCCCCAGTCTAA
829 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
43022 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGCTTACAGGTGCACAAGATGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGGTGCACATGCTGGG
* ** * * *
43087 CTCGAGCATACACTGGTGCCATATTTTTTTTCACCCAGGGCACCATCGTCGG-AGAACCTGATCG
66 CTCGGGCATATGCTGGTGCCACATCTTTTTTCACCCGGGGCACCATCGTCGGAAGAACCTGATCG
* *
43151 GTGGCATTGGGGTTCCGGCGATTGGGGGG-CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GCGGCATTAGGGTTCCGGCGATTGGGGGGCCGA-GGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
43215 TTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGACAACTCACACCCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
43280 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
43345 TTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
43410 ATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCTGAAAAAATTTAAAAA
390 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* ** ** *
43475 AAATCTTGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAA
455 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
43540 ACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
520 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
43605 GCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCATATTGATCCACGGCTTGTGCATCTCG
585 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
43670 CCTCTCTGGCCGACGT-G-G--TGCCCACCCGCCCGCTCGTTTCGTCGGTTGCCTTAGGCATACG
650 CCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** *
43731 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGTAGGATC-AGCAGCACGC
715 GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTATGGTAGTAGGATCGA-TAGCACGC
*
43795 AGAGGGGGACCCGATCGATCCCCGGCTT-CAACATCCTGCCC
779 AGAGGGGGACCCGATCGATCCCCGGCTTGC-GCATCCTGCCC
43836 TTCTCGTCGG
Statistics
Matches: 2262, Mismatches: 311, Indels: 93
0.85 0.12 0.03
Matches are distributed among these distances:
886 2 0.00
887 125 0.06
888 2 0.00
889 7 0.00
890 204 0.09
891 52 0.02
892 221 0.10
893 34 0.02
894 30 0.01
895 446 0.20
896 271 0.12
897 3 0.00
898 1 0.00
900 1 0.00
901 55 0.02
902 294 0.13
903 456 0.20
904 24 0.01
905 6 0.00
906 6 0.00
907 18 0.01
908 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGGTGCACATGCTGGG
CTCGGGCATATGCTGGTGCCACATCTTTTTTCACCCGGGGCACCATCGTCGGAAGAACCTGATCG
GCGGCATTAGGGTTCCGGCGATTGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTATGGTAGTAGGATCGATAGCACGCAG
AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:43026 original size:26 final size:26
Alignment explanation
Indices: 42996--43048 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
42986 GTTGACTGAG
*
42996 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
43022 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
43048 G
1 G
43049 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:44050 original size:26 final size:26
Alignment explanation
Indices: 44021--44099 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
44011 GTTGACTTAG
44021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
44047 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
44073 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
44099 G
1 G
44100 ATCAGACCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:56796 original size:24 final size:26
Alignment explanation
Indices: 56747--56797 Score: 88
Period size: 24 Copynumber: 2.0 Consensus size: 26
56737 GTTGACTTAG
56747 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
56773 GCATA-GGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
56797 G
1 G
56798 ATCGACCGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 10 0.40
25 10 0.40
26 5 0.20
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:59055 original size:872 final size:865
Alignment explanation
Indices: 54864--60983 Score: 8253
Period size: 859 Copynumber: 7.0 Consensus size: 865
54854 GCCCACCTGT
** *
54864 CCGCTCGTTTCGTCAATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACC
* * *
54929 GAGGGTTGTGGCAGCAGGATC-GACAGCACGCTGAGGGGGACCCAGCCAATCCCAGGCTTGCGCA
66 GAGGG-TGTGGCAGCAGGATCAG-CAGCAC-CTGAGGGGGACCC-GTCGATCCC-GACTTGCGCA
* * * ** * *
54993 TCCTGCCCCTCTAGCCAGCTGAGTGCCCATACGCTCATTTTGTGGGTTGACTTAGGCATACGGAG
126 TCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
55058 TTCATTCCCAATCTAAGATCGGA-CTGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCAT
191 TTCATTCCTAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCAT
* *
55122 GTGCT-GTGCCACATTTTTTTTTGCCCAGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACC
255 GTGCTGGTGCCACATTTTTTTTTG-CCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* *
55186 GGCGGCATTGGGGTTCCGGCGATTGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATAGGTGC
319 GGCGGCATTGGGGTTCCGGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
55251 TGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAGAACTCACA-CCCCTTAA
384 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
55315 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
449 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
55380 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
514 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
55445 -AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TGAAAAAATTTTAAAAA
579 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
**
55508 AATCTTGAACCGTAAAAAGTTT-AAAAATC-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
644 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
55571 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
709 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
55636 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
774 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
55701 CTCTCTGGCCGCGTAGTGCCCGCCCG-
839 CTCTCTGGCCGCGTAGTGCCCGCCCGC
* *
55727 CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGAC-CAGA-
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGA-AC
** *
55789 CGAGGGTTGTGGCAGCAGGATTGGCAGCA-TTGA-GGGGACCCGTCGATCCCCG-CTTGCGCATC
65 CGAGGG-TGTGGCAGCAGGATCAGCAGCACCTGAGGGGGACCCGTCGAT-CCCGACTTGCGCATC
55851 CTGCCCCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
128 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
55915 CATTCC-AGTCTAAGATCAGA-CCGACCGAGGGTTGCGGGTGCACATGCT-GGCTCGGGCATGTG
193 CATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTG
*
55977 CTGGTGCC-CA--TTTTTTT-CCCGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GCG
258 CTGGTGCCACATTTTTTTTTGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCG
56037 GCATTGGGGTT-CGGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
323 GCATTGGGGTTCCGGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
56101 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAG
388 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
56165 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
453 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
56230 CAAATGGTCACAAAATCCTGTACACTTCGA-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
518 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
56294 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAATC
583 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
*
56358 CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
648 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
56423 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAA
713 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
*
56488 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCT
778 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC-
*
56553 TCTGGCCGTGTAGTGCCCGCCCG-
842 TCTGGCCGCGTAGTGCCCGCCCGC
* * * * *
56576 TCG-TCATTTTGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-C
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACC
*
56638 GAGGGT-TGGCAGTAGGATCAGCA-CA-CTGA-GGGGACCCGATCGATCCCGACTTGCGCATCCT
66 GAGGGTGTGGCAGCAGGATCAGCAGCACCTGAGGGGGACCCG-TCGATCCCGACTTGCGCATCCT
56699 GCCCCTCTGGCCGGCTGA---CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
130 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
56761 TTCCCAGTCTAAGCATAGGAGTTCATTCCAGTCTAAGATCGACCGACCGAGGGTT--GGGTGCAC
195 TTCCTAG--T---C-TA--AG---A-T-C-G-----GATCG---GACCGAGGGTTGCGGGTGCAC
* * * * *
56824 ATGCTGGGCT-GGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCCGAGCACCATCG-CGG-GCATC
238 ATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTTGCCGGGGCACCATCGTCGGAGCATC
* * * *
56885 ATC--AGAACCTGACC-GCGGCATT-GGGTTCTGGCGATTGGGGGGCGGGGGGGTGTGCACACAT
303 GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGCCGGGGGGTGTGCGCACAT
56946 GATGTGC-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
368 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
57010 ACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
433 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
57074 TGAAATGGGGACACTTTTTTCAAATGGT--CAAAATCCTGTACACTT-GAGTTTTTAGCTGAATT
498 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
57136 TTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
563 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * *
57200 GAAAAAATTTTAAAAAAATCGC-AACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA-AAG
628 GAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
57263 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
693 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
57328 AATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
758 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
57393 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCACCCGC
823 GGCTTGCGCATCCCGCCTCTCTGGCC-GCGTA--G-T-GCCCGCCCGC
* * * * * * * *
57441 CCACTCATTTTGTCGGTTGGCTTAGGCATACGTAGGTCATTCCCATTCTAAGATCGGAC-CAGAC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGA-AC
* * * * * * * *
57505 TGAGGGT-TACGGCGGCAGGATCGGTAGCACACAGAGGGAGACCCGGCCGATCCCCGACTTACGC
65 CGAGGGTGT--GGCAGCAGGATCAGCAGCAC-CTGAGGGGGACCC-GTCGAT-CCCGACTTGCGC
* * *
57569 ATCTTGCCCCTCTGGCCGGCGGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGCA
125 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
57634 GTTCATT-CTCAGTCTAAGCATACAGAGTATATTTCCAGTCTAAGATCAAACTAGATAGAGGGTT
190 GTTCATTCCT-AGTCTAAG-AT-C-G-G---A--T-C-G-----GA-C---C------GAGGGTT
* *
57698 GCAGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTCGCACGGGG---CA--
228 GCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTTGC-CGGGGCACCATC
* *
57758 --C----CATCGTCGGAGAACCTGACCGACGGCATTGGGGTT-CGACGGATTGGGGGG-CGGGGG
292 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGC-GATTGGGGGGCCGGGGG
57815 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCAT
356 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
57879 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
421 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
57944 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
486 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
58009 TTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
551 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
58073 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
616 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
58138 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
681 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
58203 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
746 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
** * *
58268 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCTGTATAGTACCCGCCCAC
811 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC-GCGTAGTGCCCGCCCGC
* * * * *
58324 ACGCTCGTTTCGTCGGTTGGCTTAGCCAGACGGATTTCATTCCCTGTCTAAGAAT-AGACTGAAC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACTGAAC
* * * *
58388 CAAGGGTGGTAGCAACAGGATCAGCAGCACGCTGAGGGGGGCCCAGTCGATCCTCGACTTGCGCA
65 CGAGGGT-GTGGCAGCAGGATCAGCAGCAC-CTGAGGGGGACCC-GTCGATCC-CGACTTGCGCA
** * * * * * *
58453 TTTTACCCCTCTGGTCGGTTGAGCGCCTGCACGCTTGTTTCGTGGGTTAACTTAGGCATACGGAG
126 TCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * * *
58518 TTCCTTCCTAGTCTAAGATCGGATTGGACCGAGGGTTGCGGGTGTAGATGCTGGGCTCAGGCAAG
191 TTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATG
* *** * *
58583 TGCTGGTACTGTATTTTTTTTTGCTCGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACTG
256 TGCTGGTGCCACATTTTTTTTTGC-CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * *
58648 GCGGCATTGGGGTTCCGACCATTTGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGC
320 GCGGCATTGGGGTTCCGGCGA-TTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
58713 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAA
384 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
58778 AGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
449 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
58843 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
514 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
58908 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
579 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
*
58973 AATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
644 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
59038 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
709 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
59103 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
774 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
59168 CTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGC
839 CTCTCTGGCC-GCGTAGTG--C-C-CGCCCGC
* *
59200 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACC
* * * * * *
59265 GAGGGTTGTGGTAGCAGGATCGGTAGCACGCTGAGGGGGACCCGACCGATCCCTGCCTTGCGTAT
66 GAGGG-TGTGGCAGCAGGATCAGCAGCAC-CTGAGGGGGACCCG-TCGATCCC-GACTTGCGCAT
* ** * * * *
59330 CCTGCCCTTCCAGCCGGCTGAGTGCCCGCATGCTCGTTCCATGGGTTAACTTAGCCATACGAAGT
127 CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG-----TT-G----AC----T
* *
59395 TCATTCCCGGTTTAAGCATACGGAGTTCATT-CTCAGCCTAAGATCGGATCAGACCGAGGGTTGC
178 T-A------G-----GCATACGGAGTTCATTCCT-AGTCTAAGATCGGATCGGACCGAGGGTTGC
* * *
59459 AGTTGCACATGCTGGGCT-AGGGCATGTGCTGGTGCCAAATTTTTTTTTGCCCGGGG------CG
230 GGGTGCACATGCTGGGCTCA-GGCATGTGCTGGTGCCACATTTTTTTTTG-CCGGGGCACCATCG
* *
59517 -C----CATCGTCGGAGAACCTGACCGGCGACATT--GGTTCCGGCGATTGGGGGG-TGGGGGGT
293 TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGCCGGGGGGT
* * *
59574 GTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTATTTATTGGTCCCCTATCCCTCATC
358 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT-TATATTGGCCCCCTATCCCTCATC
** * *
59639 AAACCTCGAGAACTCACACCAACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCA
422 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * *
59704 ATTAAAGTGTTTGAAATGGGG--ACTTTCTTCAAATTGTCACAAATTCCTGTACACTTTGAGTTT
487 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* ** * * *
59767 TCAGCTGAATTTTTTTGCACATGCCAATAAAAATACAAGGATTAGGTCTACCAAGTTTGGGGCCA
552 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
59832 AAATTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACAGTAAAAGGTTTCAAAAATCGTGAAAAA
617 AAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* *
59897 TAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGGTTAAGGGACCATTGTATGAATTTA
682 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
*
59962 CAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
747 CAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * ** * *
60027 TATTGATCCATGGCTTGCACATCCTACCTCTCTGGCCGATGTAGTGCCCCCCCGC
812 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG-CGTAGTGCCCGCCCGC
* * * * * *
60082 CCGGTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACTGGACC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACC
* * *
60147 GAGGGT-T---A-C--GA-CAGCA-CA-CAGAGGGGGACCCGGGT-GATCCCCGAGTTCCGCATC
66 GAGGGTGTGGCAGCAGGATCAGCAGCACCTGAGGGGGACCC--GTCGAT-CCCGACTTGCGCATC
* * * * * * *
60201 TTACCCCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTAACGTAGGCATACGGAGTT
128 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * *
60266 CATTGCC-AGTCTAAGATCGAATCAGACCGAGGGTTACGGGTGCACATGTTGGGCTC-GAGCATG
193 CATT-CCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAG-GCATG
* * * * *
60329 TGCTGGTGCCATACTTTTTTTCGCTCGGGCCACCATCGTCAGAGCATCGTCGGAGAACCTGACCG
256 TGCTGGTGCCACATTTTTTTTTGC-CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
** * * *
60394 ATGGCATTGGGGTTTCGACGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
320 GCGGCATTGGGGTTCCGGCGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
60459 TGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
384 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
** * *
60523 AGAGCATTTGAGATTTTTTAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTT
449 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
60588 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
514 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
60653 CAAAAATGCAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
579 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * * * *
60718 AATTCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAATCGTCTTGCCACGAAA
644 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
60783 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGA
709 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * *
60848 CATAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGC
774 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* ***
60913 CTTTCTAGTTGGCGTAGTGCCCGCCCGC
839 CTCTCT-GGCCGCGTAGTGCCCGCCCGC
* * *
60941 CCGCTTGTTTTGTCGGTTAGCTTAGGCATACGGAGTTCATTCC
1 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
60984 TAGTATAATA
Statistics
Matches: 4724, Mismatches: 342, Indels: 386
0.87 0.06 0.07
Matches are distributed among these distances:
843 2 0.00
844 134 0.03
845 50 0.01
846 333 0.07
847 70 0.01
848 223 0.05
849 25 0.01
850 10 0.00
851 3 0.00
852 18 0.00
853 33 0.01
854 13 0.00
855 70 0.01
856 32 0.01
857 165 0.03
858 25 0.01
859 410 0.09
860 158 0.03
861 120 0.03
862 66 0.01
863 55 0.01
864 164 0.03
865 60 0.01
866 42 0.01
867 60 0.01
868 64 0.01
869 26 0.01
870 129 0.03
871 157 0.03
872 299 0.06
873 8 0.00
874 15 0.00
875 38 0.01
876 145 0.03
877 3 0.00
878 53 0.01
879 1 0.00
880 13 0.00
881 70 0.01
882 209 0.04
883 168 0.04
884 60 0.01
885 105 0.02
886 372 0.08
887 208 0.04
888 109 0.02
889 9 0.00
890 2 0.00
891 28 0.01
896 2 0.00
897 1 0.00
901 3 0.00
902 85 0.02
903 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (865 bp):
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACC
GAGGGTGTGGCAGCAGGATCAGCAGCACCTGAGGGGGACCCGTCGATCCCGACTTGCGCATCCTG
CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTG
GTGCCACATTTTTTTTTGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
TTGGGGTTCCGGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
GCCGCGTAGTGCCCGCCCGC
Found at i:62725 original size:26 final size:26
Alignment explanation
Indices: 62688--62740 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
62678 GTTAACTTTG
*
62688 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
**
62714 GCATACGAAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
62740 G
1 G
62741 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:63151 original size:862 final size:845
Alignment explanation
Indices: 61118--63438 Score: 3023
Period size: 862 Copynumber: 2.7 Consensus size: 845
61108 TCCGAGATTG
*
61118 GGGGGCAGGGGGTGTGCGCAACATGATGTGCGATGGGTGCTGGTAC-TGGCCCTTATATTGGCCC
1 GGGGGCGGGGGGTGTGCGC-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
61182 CCTATCCCTCATC-AA-CTCGAG-ACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
65 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
61244 CTGCAGTAGCCATTAAAGTGTCTGAAATGGGGA-ACTTTTTTCAAATGGTCACAAAAATCCTATA
130 CTGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCCTGTA
*
61308 CACTTCAAGTTTTTAGCTGAATTTTTTTTGTGCAT-CCAAC-AAAATACAA-GATCACGTCTACC
194 CACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
61370 AAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTAAAAAAATCCTCGAACCGTAAAAAGTTTC-A
258 AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCC-CGAACCGTAAAAAGTTTCAA
61434 AAATCATG-AAAATAGAAAACGAGTCGTCTTGCCAATGAAACTTCACATGAAGGCTTAAGGGACC
322 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCC-ATGAAACTTCACATGAAGGCTTAAGGGACC
* * * *
61498 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAACATCTACCTAAA
386 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* * *
61563 CCCACCTACCACCAC-ATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGACTTAGTGCCC-
451 CCCACCTACCACC-CTATCGATCCACGGCTTACGCATCCCGTCTCTCTGACCGACGTAGTGCCCT
* * * *
61626 -GCCCGCCCGCTCGTTTCGACGGTTGGCTTAAGCATATGGAGTTCATTCCCGGTCTAAGATCAGA
515 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * * * * ***
61690 CCGGACCGGGGGTTACGGTAGCAAGATCGACAGCATGCTGAGGGGGACCCTGCCGATCCTTGGCT
580 CCAAACCGAGGGTTACCGCAGCAAGATCGACAGCATACGGAAGGGGACCCTGCCGATCCCCAGCT
* * ** *
61755 TGCACATCCTACCCCTTTAGCCGACTGAGCGCCCGCAAGCTTGTTTCGTGAGTTGACTTAGGCAT
645 TGCACATACTACCCCTCTAGCCGACTGAGCGCCCGCAAGCTCCTTTCGTGAGTTAACTTAGGCAT
*
61820 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGGTGCACATGCTGGGCTCG
710 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGGTGCACATGCTGGGCTCG
* ** *
61885 GGCATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACCATCGCCGAAGCATCACCGGAGAACC
775 GGCATGTGCTGGTGCCACATTTTGTTTCACCCAGGGCACCAT---C----CA-CACCGGAGAA-C
61950 TGACCGACGGCATTGAGGTTCCGATGATTGA
831 -GA-C-AC-GCA-TGA-G--CC--------A
*
61981 GGGGGCCGGGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CC
1 GGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* **
62045 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAAAATTTGAGATTTTACAGGTTTG
65 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
62110 CTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCCTGTA
130 CTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
*
62175 CACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCA
194 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
62239 ACTTTGGGGCCAAAAATCCTTTTGAAAAAAGTTTAAAACAATCACGAACCGTAAAAAGTTTCAAA
259 AGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAA-AATCCCGAACCGTAAAAAGTTTCAAA
* *
62304 AATCATGAAAAATAGAAAACAAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
323 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* * *
62369 TGTATTAATTTGCAATCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
388 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* * *
62434 CACCTACCACCCTATCTATCCACGGCTAACGCATCCCGCCTCTCTGACCGACGTAGTGCACACTT
453 CACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGACCGACGTAGTGC-C-CTT
* *
62499 GCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGTAT-GGA
516 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGA
* * * *
62563 CCAAACTGAGGGTTACCGCAGCAGGATCGATAGCA-ACGGAAGTGGACCC-GACCGATCCCCAGC
580 CCAAACCGAGGGTTACCGCAGCAAGATCGACAGCATACGGAAGGGGACCCTG-CCGATCCCCAGC
** * * * *
62626 TTGTGCATACTGCCCCTCTAGCCGACTGAGCGCCCGTACA-CTCCTTTCGTGGGTTAACTTTGGC
644 TTGCACATACTACCCCTCTAGCCGACTGAGCGCCCGCA-AGCTCCTTTCGTGAGTTAACTTAGGC
62690 ATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTTGTCTAAGATCAGACCGGATTG
708 ATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A---C----C---G----GACC-----G
* * ** * * * *
62755 AGGGTTACGGGTGCACATGTTGGTTTTGGGCATGTGCTGGTGTCGCATTTTGTTTCACCCAGGTC
747 AGGGTTACAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTGTTTCACCCAGGGC
62820 ACCAT-CA-A-C-G-G-A-GA-AC-C-TGA-CC-
812 ACCATCCACACCGGAGAACGACACGCATGAGCCA
62842 GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
1 GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
62907 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
66 CTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
62972 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
130 CTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
63037 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
194 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
63102 AGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
259 AGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
63167 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
324 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
63232 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
389 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
* *
63297 ACCTCCCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT-AGCCGGCGTAGTGCCCCTTC
454 ACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGA-CCGACGTAGTG-CCCTT-
* * * * * *
63361 GCCCGCCCGCTCGTTTCATCGGTTGTCTTAGGCATACAGAGTTCATTCCCACTCTAAAATCGGAC
516 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
*
63426 CAGACCGAGGGTT
581 CAAACCGAGGGTT
63439 GTGATAGTAG
Statistics
Matches: 1299, Mismatches: 105, Indels: 109
0.86 0.07 0.07
Matches are distributed among these distances:
860 55 0.04
861 43 0.03
862 402 0.31
863 106 0.08
864 30 0.02
865 5 0.00
866 55 0.04
867 72 0.06
868 83 0.06
869 154 0.12
870 26 0.02
871 2 0.00
872 95 0.07
873 85 0.07
874 7 0.01
876 2 0.00
878 2 0.00
879 1 0.00
881 2 0.00
882 1 0.00
884 1 0.00
885 1 0.00
886 2 0.00
887 1 0.00
888 1 0.00
889 1 0.00
890 2 0.00
893 4 0.00
898 58 0.04
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (845 bp):
GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGACCGACGTAGTGCCCTTGCCCG
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAAC
CGAGGGTTACCGCAGCAAGATCGACAGCATACGGAAGGGGACCCTGCCGATCCCCAGCTTGCACA
TACTACCCCTCTAGCCGACTGAGCGCCCGCAAGCTCCTTTCGTGAGTTAACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGGTGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCACATTTTGTTTCACCCAGGGCACCATCCACACCGGAGAACGACACGCATGAGCCA
Found at i:64668 original size:26 final size:26
Alignment explanation
Indices: 64616--64668 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
64606 GTTGACTTAG
** *
64616 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAATATAA
64642 GCATACGGAGTTCATTCCCAATATAA
1 GCATACGGAGTTCATTCCCAATATAA
64668 G
1 G
64669 ATTGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:65535 original size:26 final size:26
Alignment explanation
Indices: 65505--65557 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
65495 GTTGACTTAG
65505 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
65531 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
65557 G
1 G
65558 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:65813 original size:19 final size:19
Alignment explanation
Indices: 65789--65826 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
65779 TTAAAGAGCA
65789 TTTGAGATTTTACAGGTTT
1 TTTGAGATTTTACAGGTTT
65808 TTTGAGATTTTACAGGTTT
1 TTTGAGATTTTACAGGTTT
65827 GCTGCCAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.21, T:0.53
Consensus pattern (19 bp):
TTTGAGATTTTACAGGTTT
Found at i:66442 original size:26 final size:26
Alignment explanation
Indices: 66413--66462 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
66403 ACTTAAGCAT
66413 ACGGAGTTCATTCCCAGTCTAAGAAG
1 ACGGAGTTCATTCCCAGTCTAAGAAG
* *
66439 ACGGAGTTCATTCCTATTCTAAGA
1 ACGGAGTTCATTCCCAGTCTAAGA
66463 TCAAACCGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
ACGGAGTTCATTCCCAGTCTAAGAAG
Found at i:67117 original size:903 final size:896
Alignment explanation
Indices: 63561--68945 Score: 6856
Period size: 889 Copynumber: 6.0 Consensus size: 896
63551 GTTGACTTAT
* ** * **** * *
63561 GGAGTTCATTCCCAGTCTAAGTTTGGACC-GAACTGAGGGTTGCCACAGTAGGATCGATAGCA-G
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGTGGTAGCAGGATCGACAGCACG
* * * * * * * * * *
63624 TTGAAGAGGACCTGATCGATTCCTGACTTGCGCATACTGCCCCTCTGGCCGGTTGAGCGCCTGCA
65 CTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * * * * ** *
63689 CACTCATTTCATGGATTAACTTTGGCGTACAAAGTTCATTCCCAGTCTAAGCAAACGGAGTTCAT
130 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
63754 TTCCAGTCTAAGATTGGACCGGACCAAGGGTTACGGGTGCACATGCTAGGCTCGGG--GGATGCT
195 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATG-TGCT
* ** * * * * *
63817 GGTGCTC-CA-TTTTTTTCACTAGGGCCACCATCGCCGGAGCATCGTCGGAGAACCTAACTG-GG
259 GGTGC-CGCATTTTTTTTCGCCCGGGGCACCATCTCCGGAG-A---TCGGAGAACCTGACCGACG
* * *
63879 GATATTGGGGTTCCG-CTGATTAGGGGGGCCGGTGGGTGTGCGCACATAATGTGCGATGGGTGCT
319 G-CATTGGGGTTCCGAC-GATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
63943 TGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
381 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
**
64008 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTAAGAAATGGGGACACTTT
446 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
64073 TTTCAAATGGTCACAAAATCCTATACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
511 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
64138 AAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACT-C--CTGAAAAAATTGTAAACAAA
576 AAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* *
64200 TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
641 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
**
64265 TCACATGAAGGCTTAAGGGACCATTGTATGAATAAACAAGCCATAAAAATGGCATTGGCATGGCA
706 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* *
64330 GAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCT
771 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* *
64395 CTCTGGCCGACGTAGTGCCCGCCCGCACGTACCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCA
836 CTCTGGCCGGCGTAGTGCCCG--C-C-CG---CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
64460 TAC
894 TAC
* ** * * * * ** *
64463 GGAGTTCATTCCCTGTCTAAGATTGGACCAGATCGAGGGTTGTAGCAGCAAGATCGGTAGCATGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* * * * * *
64528 AGAGGGGGACCTGACCGATCCCCGGCTTGCGTATCCTACCCCTCTGGTCGGCTGAGCGCCCGCAC
66 TGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
64593 GATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATACGGAGTTCATT
131 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * **
64658 CCCAATATAAGATTGGACTAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
196 CCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * * ** *
64723 TGCCGCATTTTTTTTCTCCCGGGGCACCATCGCCGAAGATC-TTG-A--TGA--G-CGACATTGG
261 TGCCGCATTTTTTTTCGCCCGGGGCACCATCTCCGGAGATCGGAGAACCTGACCGACGGCATTGG
** * *
64781 GGTTCCGGTGATTGGGGGGCGAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG
326 GGTTCCGACGATTGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
64846 CCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACACCCCCTTAAAGAGCATTTG
390 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
64910 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
455 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
64975 GTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACA
520 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* **
65039 AGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAAC
585 AGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAAC
65104 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
649 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
*
65169 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATG
714 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG
65234 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC
779 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC
* * *
65299 GGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAG
844 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
65352 GGAGTTCATTCCCACTCTAAGA-CTGGACCAGACCGAGGGTTGTGGTAGCAAGATC-AGCAGCAC
1 GGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGTGGTAGCAGGATCGA-CAGCAC
* * * * * *
65415 ACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTTGCCACTTTGGTCGGCTGAGCGCCCGC
64 GCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
65480 ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
129 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
65545 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTCGACTCGAGCATGTGCT
194 TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCT
* * *
65610 GGTGCCGCATTTTTTCTCGCTCGGGGCACCA--T-C---G-TCGGAGAACCTGACCGACGGTATT
259 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCTCCGGAGATCGGAGAACCTGACCGACGGCATT
* * *
65668 GGGGTTCCGACGATT-----G--GGGGGATGTACACACATGATGTGCGATGGGTGCTGGTACTTG
324 GGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
65726 GCCCTTTTTATTAGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCCCTTAAAGAGCATT
389 GCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT--A-A--A--
65791 TGAGATTTTACAGGTTTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
446 -GAG------CA-----TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
65856 TAGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTCGCTGAATTTTTT
499 T-GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * *
65921 TTGTGGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTTGA
562 TTGT-GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTCTGA
65985 AAAAA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
625 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
66049 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAATGAA-TTACAAGCCATAAAA
690 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAA
*
66113 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACA
754 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * **
66178 GCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCAGCCTACCCGCTCGTTTCGTCGGTT
819 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
66243 GGCTTAGGCATAC
884 GGCTTAGGCATAC
** *
66256 AAAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AGGGGTTGTGGTAGTAGGATCGACAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTGTGGTAGCAGGATCGACAGCACG
* * * * * * * *
66320 CTGAGGGGGACCTGTTCGATCCCCGGCTTGTGCATCCTACGCCTCTGGCCGACTGAGAGCCTGCA
65 CTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
66385 CGCTCTTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGAAGACGGAGTTCAT
130 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * ** * * * *
66450 TCCTATTCTAAGATCAAACCGGATCGAGGGTT-CTGAGTACACATGCTGGGCTCGGGCATGTGCT
195 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGC-GGGTGCACATGCTGGGCTCGGGCATGTGCT
* *
66514 GGTGTCGCATTTTTTTTCGCCCAGGGCACCATCTCCGGAGCATCACCGGAGAACCTGACCGACGG
259 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCTCCGGAG-AT---CGGAGAACCTGACCGACGG
*
66579 CATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGT
320 CATTGGGGTTCCGACGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
66644 ACTTGGCTCTTATATTGGCCCCCTATCCCTCACCAAACCTCGACAACTCACACCCCCTTAAAGAG
384 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
66709 CATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTATTTT
449 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
** *
66774 CAAATGGTCACAAAATCCTGTATGCTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAA
514 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * *
66839 AAGACAAGGATCATGTCTACCTAACTTTGGGCCAAAATTCCTTTCTGAAAAAATTTTAAAAAAAT
579 AATACAAGGATCATGTCTACC-AAGTTTGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAAAT
* * * * *
66904 CCCGAACCGTAAAACGTTTCAAAAATCATGAAAAATAGAAAATGAGTTGTCCTGCCATGAAACTT
642 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * *
66969 CACATGAAGGCTTAAGGGACCGTTGTATGAATTTAGAAGCCATAAAAATGGCATTAGCGTGGCTG
707 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* * *
67034 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCCACGGCTTGCTCATCCCGCCTT
772 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* * * * *
67099 TCTAGCCGGCGTAGTGCCCGCCCGTCCGCCTGCTCGGTTCGTCGGTTGGCTTAGGCATAT
837 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * *
67159 GAAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCTA-TAGGATCGACAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGG-TAGCAGGATCGACAGCACG
* * * * * * *
67223 CTGAAGGGGACCCGGTCGATCCCCAGG-TTGTGCATCCTGCCCCTCTGGCCGGTTGAGCACCAGT
65 CTGAGGGGGACCCGATCGATCCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
67287 GCACTCGTTTTGTGGGTTGA---A---TTA--G-G-T-A-T---A--C---G---A---AGTTCA
129 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
67326 TTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGGTGCACATGCTAGGCTCGAGCATGTGCT
194 TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCT
* ** ** * *
67391 GGTGCCACATTTTTTTT-GCCCGGGGCACCATCAACGGAGCATCGTCGGAGAACCTGATTGGCGA
259 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCTCCGGAG-A---TCGGAGAACCTGACCGACGG
* * * *
67455 CATTGGGGTTCCGGCGATTGGGGGACTGGGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGTA
320 CATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
67520 CCTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGC
385 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
67585 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGAAACTTTTTTC
450 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
67650 AAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTGTTTTAG-GCATGCCAACAAA
515 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAAAAAA
67714 AATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
579 AATACAAGGATCATGTCTACCAAGTTTGGG-CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* * * *
67779 TCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTC
643 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
67844 ACATGAAGGCATAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGTATTGGCAGGGAAGA
708 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* *
67909 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGTGCATCCCGCCTCT
773 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
** * * *
67974 CTGGCCGGCGTAGTGCCTACCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATAT
838 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
68033 GGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGGAGCAGGATCGACAGCACAC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* * * *
68098 TGAGGGGGCCCCGATCGATCCCCGGCTTACGTATCCTGCCCCTCTGGCCGACTGAGCGCCCGCAC
66 TGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
68163 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGTAGTTGATT
131 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
68228 CCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGGTGCAAATGCTGGGTTCAGGCATGTGCTGG
196 CCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
** * * *
68293 TGTTGCATTTTTTTTTGCCCGGGGCACCATCGCC---GA----AGAACCTGACCGACGGCGTTGG
261 TGCCGCATTTTTTTTCGCCCGGGGCACCATCTCCGGAGATCGGAGAACCTGACCGACGGCATTGG
* *
68351 CGTTCTGACGATTGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
326 GGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
68415 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
391 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
68480 GATTTTACAGGTTTGCTGCCAATAGCCATTAGAGTGTTTGAAATAGGGACACTTTTTTCAAATGG
456 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
68545 TCACAAAATCATGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCAAAAAAAAATATAA
521 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * *
68610 GGATCATGTCTA-AAACATTTGGAGCCAAAACTCCTTCGGAAAAAATTTTAAAAAAATCCC-AAC
586 GGATCATGTCTACCAA-GTTTGG-GCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAA-
* *
68673 CCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCAT-TTCGCCATGAAACTTCACAT
648 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT-GCCATGAAACTTCACAT
*
68737 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGGCAGAAATA
712 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
*
68802 TGAAGATGTGCCTAAACCCACCT---A-CCTATCGATCCACGGCTTGCGCATCCCGCCTTTCTGG
777 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
*
68863 CCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
842 CCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** *
68918 GGACCTCATTCCCAGTCTCAGATCAGAC
1 GGAGTTCATTCCCAGTCTAAGATCAGAC
68946 TGGACTGAGG
Statistics
Matches: 3933, Mismatches: 433, Indels: 251
0.85 0.09 0.05
Matches are distributed among these distances:
873 3 0.00
874 376 0.10
875 240 0.06
876 59 0.02
877 74 0.02
878 1 0.00
879 1 0.00
880 3 0.00
881 42 0.01
882 32 0.01
883 21 0.01
884 3 0.00
885 108 0.03
886 8 0.00
888 14 0.00
889 706 0.18
890 33 0.01
891 5 0.00
892 32 0.01
893 162 0.04
894 92 0.02
895 3 0.00
896 225 0.06
897 8 0.00
898 1 0.00
899 1 0.00
900 84 0.02
901 62 0.02
902 171 0.04
903 620 0.16
904 514 0.13
905 93 0.02
906 1 0.00
907 1 0.00
908 2 0.00
910 1 0.00
912 1 0.00
914 3 0.00
915 37 0.01
917 1 0.00
919 1 0.00
920 1 0.00
921 1 0.00
922 44 0.01
923 42 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
TGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGCATTTTTTTTCGCCCGGGGCACCATCTCCGGAGATCGGAGAACCTGACCGACGGCATTGG
GGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
GGATCATGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCG
TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGG
CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
Found at i:68223 original size:26 final size:26
Alignment explanation
Indices: 68186--68238 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
68176 GTTGACTTAG
*
68186 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
68212 GCATACGTAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
68238 G
1 G
68239 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:69924 original size:159 final size:159
Alignment explanation
Indices: 69598--69975 Score: 465
Period size: 159 Copynumber: 2.4 Consensus size: 159
69588 AGTGCCCGCC
* * * **
69598 CGCCCGCTCGCTCGTTTCATCGGTTGGCTT-GG-ATACGAAGTTCATTCCCAATCTAAGATTGGA
1 CGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCCGA
* * *
69661 CCGAACCAAGGGTTACGGCAGTAGGATCGACAGCACACTGAGGGGGACTCGATCGATCCCCGGCT
66 CCGAACCAAGGGTTACAGCAGCAGGATCGACAGCACACTGAGGGGAACTCGATCGATCCCCGGCT
* *
69726 TGTGCATACTGCCCCTCTGGTCGGTTGAG
131 TGCGCATACTGCCCCTCTGGCCGGTTGAG
* * * * *
69755 CACTCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCCGA
1 CGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCCGA
* * * * **
69820 CCGAACCAAGGGTTACAGCAGCAGGATTGGCAGCACACTGAGGGGAACTTGGTCGATCCTTGGCT
66 CCGAACCAAGGGTTACAGCAGCAGGATCGACAGCACACTGAGGGGAACTCGATCGATCCCCGGCT
*
69885 TGCGCAT-CTTGCCCCTCTGGCCGGTTGGG
131 TGCGCATAC-TGCCCCTCTGGCCGGTTGAG
* ** * * * *
69914 TGCCCGCACGCTAATTTCATTGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATC
1 CGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
69976 AAACAGGACC
Statistics
Matches: 185, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
157 23 0.12
158 3 0.02
159 159 0.86
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (159 bp):
CGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCCGA
CCGAACCAAGGGTTACAGCAGCAGGATCGACAGCACACTGAGGGGAACTCGATCGATCCCCGGCT
TGCGCATACTGCCCCTCTGGCCGGTTGAG
Found at i:70681 original size:33 final size:33
Alignment explanation
Indices: 70619--70686 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 33
70609 CAAATGCTGG
70619 GCTCGAGCATGTGCTGGTCTCATATTTTTTTTT
1 GCTCGAGCATGTGCTGGTCTCATATTTTTTTTT
*
70652 GCTCGGAGCATGTGCTGGTGC-CGTATTTTTTTTT
1 GCTC-GAGCATGTGCTGGT-CTCATATTTTTTTTT
70686 G
1 G
70687 AAGAACCTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 4 0.12
34 27 0.84
35 1 0.03
ACGTcount: A:0.10, C:0.18, G:0.26, T:0.46
Consensus pattern (33 bp):
GCTCGAGCATGTGCTGGTCTCATATTTTTTTTT
Found at i:72355 original size:26 final size:26
Alignment explanation
Indices: 72319--72371 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
72309 GTTGACTTAG
*
72319 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
72345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
72371 G
1 G
72372 ATCGGACAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:72860 original size:892 final size:890
Alignment explanation
Indices: 71021--75550 Score: 5695
Period size: 892 Copynumber: 5.1 Consensus size: 890
71011 ATACTGGTTC
* *** * *
71021 AAAAATTCCCGAACCGTAAAAAGTTTCAAAAATCACAAAAAATAGAAAACGAGTCATCATGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
71086 GAACCTTCACATGAAGACTTAAGGGACCATTGTACGAATTTACTAGCCATAAAAATGGCATTGGC
66 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
71151 ACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC
131 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * * ** * * *
71216 CCGCCTCTCTAACCGGCGTAGTGCTTGCCCGTCCGACCGCTCGTTTCATCGGTTGGCTTAGGCAT
196 CCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCAT
** * * *
71281 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTT-TTG--G-TAG--C-AC-G--C
261 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCAC
* * * **
71336 -TGAGGGGGACCTGGCCGATCCTCGGCTTGCATATCCTGCCCCTCTGGCCGGCTGAGCGCCCACA
326 TTAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACA
* * * *
71400 TGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTCAA-CATACGAAGTTCA
391 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AAGCATACGGAGTTCA
* * * * *
71464 TTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCT
455 TTCCCAGTCTAAGATCGGA-CAGACTGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCT
71529 GGTGCCGTATTTTTTTTTTGCTCGGGCCACCATCGTCGGAGAACCTAACC-GACGGCATTGGGGT
519 GGTGCCGTATTTTTTTTTTGCTCGGGCCACCATCGTCGGAGAACCTAACCAG-CGGCATTGGGGT
71593 TCCGACGATTGGGTGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
583 TCCGACGATT-GG-GGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
71658 CCTTATATTGCCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCCTTTGA
646 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
71723 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGGACTCTTTTTTCAAATG
711 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATG
* * *
71788 GTCACAAAATCCTATACACTTTGAGTTTTTAGCTGAATTTTCTTGTGCATGCCAAAAAAAATACA
775 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * *
71853 AGGATTACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
840 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * * ** * *
71904 AAAAAATCTCGAAGCATAAAAAGTTTGGAAAATCGTGAAAAATAGAAAATGAGTCGTTTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
71969 GAAACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** * *
72034 ATGGCAAAAATATGAAGATGTGATTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGTATC
131 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
72099 CCGCCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCCAGCTCGTTTCTTCGGTTGGCTTAGGCAT
196 CCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCAT
* * * *
72164 ACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTAAGGGTTGGGGCAGCAAGATCGGCAGCAC
261 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCAC
** ** * * *
72229 ATTAAGGGTAACCCGGTTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGACTGAGCGCCTAC
326 -TTAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCAC
*
72294 ACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
390 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
72359 TTCCCAGTCTAAGATCGGACAGCACTGAGGGTTGCGGGTGCACATGCTAGGCTCGAGCATGGGAT
455 TTCCCAGTCTAAGATCGGACAG-ACTGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCT
* * * * * *
72424 GGTGCCAG-A-TTTTTTTTCGTTCGGGCCATCATTGTCGTAGAACCTAACCTGCGGCATTGGGGT
519 GGTGCC-GTATTTTTTTTTTGCTCGGGCCACCATCGTCGGAGAACCTAACCAGCGGCATTGGGGT
* * * * * *
72487 TCC-AGTGATTGGGGCGGTCGAGGGGCTGTGCGCAAATGATGTGCAATGGGTGCTGGTAGTTGGC
583 TCCGA-CGATTGGGG-GGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
72551 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGA
646 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
72616 GATTTTATAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
711 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
72681 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAA
776 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
72746 GGATCGCATCTACGAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTTA
841 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* *
72796 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
72861 GAAACTTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
72926 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATC
131 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
72991 CTGCCTTTCTGGCCGACATAGTGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCAT
196 CCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCAT
* * * * * * * *
73056 ACGAAGTTCATTACCAGTCTAAGACCAAACTAGACTGAGGGTTGTAGCAACAGGATCGACAGCAT
261 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCA-
* ** ** * * * * *
73121 GCTT-AGGGGGACCCGACCGATCATCGGCTTGCGCATCCTGCCTTTTTGGTCGGTTGAGTGCCCG
325 -CTTAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCA
* * * * *
73185 CACACTTGCTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T---C-TA---AG---
389 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * *
73238 ATT----G-----GAT----CAGACTGAAGGTTGTGGGGGCACATGCTGGGCTCGAGCATGTGCT
454 ATTCCCAGTCTAAGATCGGACAGACTGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCT
** * * * *
73290 GGTGTTGTATTTTTTTTTCG-TCCGGGGCACCATCGTCGGAGAACCTGA-CAGGCGGCATTGGCG
519 GGTGCCGTATTTTTTTTTTGCT-CGGGCCACCATCGTCGGAGAACCTAACCA-GCGGCATTGGGG
* * * *
73353 TTCTGGCAATTGGGGGG-C-AGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCC
582 TTCCGACGATTGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * * * * *
73416 CTCAAATTAGCCCGCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAT
647 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
73481 ATTTTGCAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGT
712 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
73546 CACAAAATCCTGTACACTTGGAGATTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAG
777 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
*
73611 GATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-
842 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * * *
73659 AAAAAATCCTGAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAGAACGAGTTGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
73724 GAAACTTCACATGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
73789 ATGGCAAAAATATGAAGATGTGCCTAAACCAACCTAGCACCCTATCGATCCACGGCTTGCGCATC
131 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
73854 CTGCCTCTCTGGCTGGCATAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTT-GGTTGGCTTAGGCA
196 CCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCGTTTC-TTCGGTTGGCTTAGGCA
* ** * * * * *
73918 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTACGGTAGGAGGATTGGCAGCA
260 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCA
** * * *
73983 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCG
325 CTTA-AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCA
* * * *
74048 TACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTC
389 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * *
74113 ATTCCCAGTCTAAGTTCAGACCAGA-TCGAGGGTTGCGGGTGCACATGCTTGGCTCTG-GCATGT
454 ATTCCCAGTCTAAGATCGGA-CAGACT-GAGGGTTGCGGGTGCACATGCTGGGCTC-GAGCATGT
* * * *
74176 GCTGGTGTCGTA-TTTTTTTTTGCCCTGGCCACCATCGTCGGAGCATCGCCAGAGAACTTAACCA
516 GCTGGTGCCGTATTTTTTTTTTGCTCGGGCCACCA---TC---G--TCG---GAGAACCTAACCA
* * *
74240 GCGACATTGGGGTTCCGATGATTGGGGGGCCG-GCGGGTGTGCGCACATGATGTGCGATGGGTGC
570 GCGGCATTGGGGTTCCGACGATTGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * ** *
74304 TGGTAATTGGCCCTTATATTGGTCCCCTATCCCTCGCCAAACCTTGAGAACTCACACCCCCTTAA
635 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
74369 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGAGACACTT
700 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
74434 TTTTCAAATGTTCACAAAATCCTGTACATTTTGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAA
765 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
74499 CAAAAATACAAGGATCACGTTTATCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTAA
830 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* ** * * *
74560 AAAAAATCCCGAACAGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTTGT-TGTGCCT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT-TGCCA
* *
74624 TGAAACTTCACATGAGGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGG
65 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
74689 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGTAT
130 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
74754 CCCGTCTCTCTGGCCGACATAGTGCCAGCCCGACCGCCGGCTCATTTCGTT-GGTTGGCTTAGGC
195 CCCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCGTTTC-TTCGGTTGGCTTAGGC
* * * * * *
74818 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGACAG-TAGTTTCGATAG
259 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAAG-ATCGACAG
* * * * * * * * * *
74882 CACGTTGATGGGGACTCGGTCGACCCCCGGCTTGCGTATCCTGTCCCTCTAGCCGACTGAGCACC
323 CAC-TTAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
74947 CACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
387 CACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * *
75012 TCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGGGCGCACATGCTGGGCTCGAGCATGT
452 TCATTCCCAGTCTAAGATCGGA-CAGACTGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGT
** * *
75077 GCTGGTGCCACATTTTTTTTTTGCCTGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCA
516 GCTGGTGCCGTATTTTTTTTTTG-CTCGGG--CCA----C----CATCGTCGGAGAACCTAACCA
* * * * *
75142 GCGACATTCGGGTTTCGACGATTGGGAGGGCCGGGGGGGTGTGTGCACATGATGTGC-A-GTGGT
570 GCGGCATTGGGGTTCCGACGATTGGG-GGGCCGAGGGGGTGTGCGCACATGATGTGCGATG-GGT
* * *
75205 GCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGAGACCCCCTT
633 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
75270 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAA
698 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
75335 TTTTTTCAAATGGTCACAAAATCCTGTACACATCGAGTTTTTAGTTGAAGTTTTTTATGCATGCC
763 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
75400 AATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTGT-TGCAAAAATTTTT
828 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCTGAAAAAATTTTA
*
75463 AAAAAATCCCGAACCGTAAAAAGCTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
1 AAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
75527 TGGAACTTCACATGAAGGCTTAAG
65 TGAAACTTCACATGAAGGCTTAAG
75551 CGATAGCAGG
Statistics
Matches: 3139, Mismatches: 413, Indels: 170
0.84 0.11 0.05
Matches are distributed among these distances:
861 1 0.00
863 379 0.12
864 261 0.08
865 3 0.00
866 45 0.01
867 55 0.02
868 1 0.00
869 2 0.00
871 3 0.00
872 2 0.00
875 3 0.00
876 1 0.00
879 1 0.00
880 3 0.00
883 265 0.08
884 3 0.00
886 3 0.00
887 3 0.00
888 18 0.01
889 46 0.01
890 3 0.00
891 3 0.00
892 505 0.16
893 150 0.05
894 60 0.02
895 170 0.05
896 4 0.00
899 31 0.01
900 262 0.08
901 454 0.14
902 45 0.01
903 316 0.10
904 26 0.01
905 6 0.00
907 1 0.00
909 1 0.00
910 2 0.00
913 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCAC
TTAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACAGACTGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGG
TGCCGTATTTTTTTTTTGCTCGGGCCACCATCGTCGGAGAACCTAACCAGCGGCATTGGGGTTCC
GACGATTGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
Found at i:74104 original size:26 final size:26
Alignment explanation
Indices: 74074--74126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
74064 GTTGACTTAG
74074 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
74100 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
74126 G
1 G
74127 TTCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:75011 original size:26 final size:26
Alignment explanation
Indices: 74975--75027 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
74965 GTTGACTTAG
74975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
75001 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
75027 G
1 G
75028 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:75698 original size:26 final size:26
Alignment explanation
Indices: 75662--75714 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
75652 GTTGACTTAG
75662 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
75688 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
75714 G
1 G
75715 ATCGGGCTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:76385 original size:26 final size:26
Alignment explanation
Indices: 76349--76401 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
76339 GTTGACTTAG
76349 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
76375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
76401 G
1 G
76402 ATCGGGTCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:76876 original size:686 final size:686
Alignment explanation
Indices: 74880--77583 Score: 4303
Period size: 687 Copynumber: 4.0 Consensus size: 686
74870 TAGTTTCGAT
* * * * *
74880 AGCACGTTGATGGGGACTCGGTCGACCCCCGGCTTGCGTATCCTGTCCCTCTAGCCGACTGAGCA
1 AGCACGTTGATGGGGACTCGATCGATCCCCGACTTGCGCATCCTG-CCCTCTGGCCGACTGAGCA
* *
74945 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
65 CCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
** ** * *
75010 GTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGGGCGCACATGCTGGGCTC-GAGCA
130 GTTCATTCCCAGTCTAAGATCGGGTCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAG-GCA
*
75074 TGTGCTGGTGCCACATTTTTTTTTTGCCTGGGGCACCATCGTCGAAGCATCG-TCGGAGAACCTG
194 TGTGCTGGTGCCACA-TTTTTTTTTGCCTGGGGCACCAGCGTCGAAGCATCGCT-GGAGAACCTG
* * * * ** * *
75138 ACCAGCGACATTCGGGTTTCGACGATTG-GGAGGGCCGGGGGGGTGTGTGCACATGATGTGC-A-
257 ACCAGCGGCATTGGGGTTCCAACGATTGAGG-GGAACGGGGGGGTGTGCGCACAAGATGTGCGAT
* * * * *
75200 GTGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGAGACC
321 G-GGTGCTGGTACTTGGACCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACC
*
75265 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
385 CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
75330 GACAATTTTTTCAAATGGTCACAAAATCCTGTACACATCGAGTTTTTAGTTGAAGTTTTTTATGC
450 GACACTTTTTTCAAATGGTCACAAAATCATGTACACGTCGAGTTTTTAGTTGAAGTTTTTTATGC
75395 ATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTGTTGCAAAAATT
515 ATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTGTTGCAAAAATT
75460 TTTAAAAAATCCCGAACCGTAAAAAGCTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
580 TTTAAAAAATCCCGAACCGTAAAAAGCTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
75525 CATGGAACTTCACATGAAGGCTTAAGCGATAGCAGGATCGGC
645 CATGGAACTTCACATGAAGGCTTAAGCGATAGCAGGATCAGC
* *
75567 AGCACGTTGATGGGGACTAGATCGATCCCCGACTTGCGCATCTTGCCCCTCTGGCCGACTGAGCA
1 AGCACGTTGATGGGGACTCGATCGATCCCCGACTTGCGCATCCTG-CCCTCTGGCCGACTGAGCA
*
75632 CCCACATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
65 CCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
75697 GTTCATTCCCAGTCTAAGATCGGG-CTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAGGCA
130 GTTCATTCCCAGTCTAAGATCGGGTC-GGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCA
* * * **
75761 TGTGCTCGTGGCACATTTTTTTTTGCCTGGGGCAACAGCACCGAAGCATCGCTGGAGAACCTGAC
194 TGTGCTGGTGCCACATTTTTTTTTGCCTGGGGCACCAGCGTCGAAGCATCGCTGGAGAACCTGAC
* *
75826 CGGCGGCATTGGGGTTCCAACGATTGAGGGGAACGGGGTGGTGTGCGCACAAGATGTGCGATGGG
259 CAGCGGCATTGGGGTTCCAACGATTGAGGGGAACGGGGGGGTGTGCGCACAAGATGTGCGATGGG
75891 TGCTGGTACTTGGACCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCT
324 TGCTGGTACTTGGACCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCT
75956 TAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
389 TAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
76021 CTTTTTTCAAATGGTCACAAAATCATGTACACGTCGAGTTATTAGTTGAAGTTTTTTATGCATGC
454 CTTTTTTCAAATGGTCACAAAATCATGTACACGTCGAGTTTTTAGTTGAAGTTTTTTATGCATGC
76086 CAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTGTTGCAAAAATTTTTA
519 CAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTGTTGCAAAAATTTTTA
*
76151 AAAAATCCCGAACCGTAAAAAGCTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATG
584 AAAAATCCCGAACCGTAAAAAGCTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
76216 GAACTTCACATGAAGGCTTAAGCGATAGCAGGATCAGC
649 GAACTTCACATGAAGGCTTAAGCGATAGCAGGATCAGC
76254 AGCACGTTGATGGGGACTCGATCGATCCCCGACTTGCGCATCCTGCCCTTCTGGCCGACTGAGCA
1 AGCACGTTGATGGGGACTCGATCGATCCCCGACTTGCGCATCCTGCCC-TCTGGCCGACTGAGCA
76319 CCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
65 CCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
76384 GTTCATTCCCAGTCTAAGATCGGGTCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCAT
130 GTTCATTCCCAGTCTAAGATCGGGTCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCAT
*
76449 GTGCTGGTGCCACA-TTTTTTTTGCCTGGGGCACCAGCGTCGGAGCATCGCTGGAGAACCTGACC
195 GTGCTGGTGCCACATTTTTTTTTGCCTGGGGCACCAGCGTCGAAGCATCGCTGGAGAACCTGACC
*
76513 AGCGGCATTGGGGTTCCAACGATTGAGGGGAACGGGGTGGTGTGCGCACAAGATGTGCGATGGGT
260 AGCGGCATTGGGGTTCCAACGATTGAGGGGAACGGGGGGGTGTGCGCACAAGATGTGCGATGGGT
76578 GCTGGTACTTGGACCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTT
325 GCTGGTACTTGGACCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTT
76643 AAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
390 AAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
76708 TTTTTTCAAATGGTCACAAAATCATGTACACGTCGAGTTTTTAGTTGAAGTTTTTTATGCATGCC
455 TTTTTTCAAATGGTCACAAAATCATGTACACGTCGAGTTTTTAGTTGAAGTTTTTTATGCATGCC
*
76773 AATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTGTTGCAAAAATTTTTTA
520 AATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTGTTGCAAAAATTTTTAA
* *
76838 AAAATCCTGAACCGTAAAAAGCTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGG
585 AAAATCCCGAACCGTAAAAAGCTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGG
76903 AACTTCACATGAAGGCTTAAGCGATAGCAGGATCAGC
650 AACTTCACATGAAGGCTTAAGCGATAGCAGGATCAGC
76940 AGCACGTTGAT-GGG----GA-C--T---CGA--T-CG-A---T---C-C---CCGACTGAGCAC
1 AGCACGTTGATGGGGACTCGATCGATCCCCGACTTGCGCATCCTGCCCTCTGGCCGACTGAGCAC
76980 CCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
66 CCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
77045 TTCATTCCCAGTCTAAGATCGGGTCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATG
131 TTCATTCCCAGTCTAAGATCGGGTCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATG
*
77110 TGCTGGTGCCACA-TTTTTTTTGCCTGGGGCACCAGCGTCGGAGCATCGCTGGAGAACCTGACCA
196 TGCTGGTGCCACATTTTTTTTTGCCTGGGGCACCAGCGTCGAAGCATCGCTGGAGAACCTGACCA
* ** *
77174 GCGGCATTGGGGTTCCGACGATTGAGGGGGCCGGGGGGGTGTGCGCACAAGATGTGTGATGGGTG
261 GCGGCATTGGGGTTCCAACGATTGAGGGGAACGGGGGGGTGTGCGCACAAGATGTGCGATGGGTG
77239 CTGGTACTTGGACCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTA
326 CTGGTACTTGGACCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * * * * *
77304 AAGTGCATTTGAGATTTTATAGGTTTGTTGCCAATTGCAATTAAAGTGTCTAAAATGGGGACACT
391 AAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* ** * *
77369 TTTTTCAAATGGTCACAAAATCCTGTACAATTCAAGTTTTTAGCTGAA-TTTTTCTATGCATGCC
456 TTTTTCAAATGGTCACAAAATCATGTACACGTCGAGTTTTTAGTTGAAGTTTTT-TATGCATGCC
* * * *
77433 AACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACCAAAACTGCT-TCTGAAAAAATTTTA
520 AATAAAAATACAAGGATCACGTCTACCAAGTTTAGGG-CCAAAACTCCTGT-TGCAAAAATTTTT
** * * * * *
77496 AAAAAATGTCGAACTGTAAAAAG-TTTCAAAAATTATGAAAAAAAGAAAACGGGTCGTCCTGCCA
583 AAAAAATCCCGAACCGTAAAAAGCTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
77560 TGAAACTTCACATGAAGGCTTAAG
647 TGGAACTTCACATGAAGGCTTAAG
77584 GGACCATTGT
Statistics
Matches: 1915, Mismatches: 90, Indels: 51
0.93 0.04 0.02
Matches are distributed among these distances:
659 12 0.01
660 566 0.30
663 1 0.00
665 1 0.00
668 1 0.00
671 1 0.00
672 2 0.00
673 1 0.00
675 3 0.00
678 1 0.00
680 1 0.00
681 2 0.00
685 3 0.00
686 574 0.30
687 743 0.39
688 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (686 bp):
AGCACGTTGATGGGGACTCGATCGATCCCCGACTTGCGCATCCTGCCCTCTGGCCGACTGAGCAC
CCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGGTCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATG
TGCTGGTGCCACATTTTTTTTTGCCTGGGGCACCAGCGTCGAAGCATCGCTGGAGAACCTGACCA
GCGGCATTGGGGTTCCAACGATTGAGGGGAACGGGGGGGTGTGCGCACAAGATGTGCGATGGGTG
CTGGTACTTGGACCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCATGTACACGTCGAGTTTTTAGTTGAAGTTTTTTATGCATGCCA
ATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTGTTGCAAAAATTTTTAAA
AAATCCCGAACCGTAAAAAGCTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGGA
ACTTCACATGAAGGCTTAAGCGATAGCAGGATCAGC
Found at i:77045 original size:26 final size:26
Alignment explanation
Indices: 77009--77061 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
76999 GTTGACTTAG
77009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
77035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
77061 G
1 G
77062 ATCGGGTCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:78819 original size:26 final size:26
Alignment explanation
Indices: 78782--78834 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
78772 GTTGACTTAG
78782 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
78808 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
78834 G
1 G
78835 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:81097 original size:869 final size:878
Alignment explanation
Indices: 79386--81128 Score: 2381
Period size: 869 Copynumber: 2.0 Consensus size: 878
79376 GCACGTTGAT
* * *
79386 GGGGACTCGGTCGATCCCCGGCTCGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCACACGCTC
1 GGGGACCCGGTCGATCCCCGGCTCGCGCATCCTGCCCATCTGGCCGGCTGAGCACCCACACGATC
* *
79451 GTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
66 ATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCACTCCCA
* * * *
79516 GTCTAAGATTAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGCTGCC
131 GTCTAAGATGAGACCGGACCGAGGGTTGCGGGTCCACAAGCTAGGCTCAGGCATGTGCTGCTGCC
* * * * *
79581 ACATTTTTTTTTGCCTGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTAG
196 ACATTTTTTTTT-CC---GACACCATCGCC-GACCATCGTCAGAGAACCTAACCGGCAGCAATAG
* * *
79646 GGTTCAGGCGATTGGGGGGCCGGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGG
256 GGTTCAGGCGATT-----G-CGGGGGGGTGTGCGAACAAGATGTGCGATCGATGCTGGTACTTGG
*
79711 ACCTTATATTGGCCCCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
315 ACCTTATATTGGCCCCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTC
* ** *
79776 AGATTTTATAGGTTTGCTGCCAGTTGCAATTAAAGGTCTGAAATGGGGACACTTTTTTCAAATGG
380 AGATTTTACAGGTTTGCTGCCAGAAGCAATTAAAGGTCTGAAATAGGGACACTTTTTTCAAATGG
*
79841 TCACAAAATCCTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
445 TCACAAAATCCTATACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
79906 GGATCACTTCTACCAAGTTTGGGGCCAAAACTACTTCTGAAAGAATTTTAAAAAAATGTCGAACT
510 GGATCACTTCTACCAAGTTTGGGGCCAAAAATACTTCTGAAAAAATTTTAAAAAAATCTCGAACC
* * **
79971 GTAAAAAGTTTCAAAAATTGTGAAAAAAGGAAAACGGGTCGTCCTGCCATGAAACTTCACATGAA
575 GTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAATCGTCCTGCCATGAAACTTCACATGAA
* *
80036 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGA
640 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAA
80101 AGATGTGCCTAAACCAACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGCCTCTATGGCCT
705 AGATGTGCCTAAACCAACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGCCTCTATGGCCT
* * ** *
80166 GCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGGCCTTTGGCTGAGGCATACAGATTTCATTCCC
770 GCATAATGCCCACCCGCCCGCCCGCTCGTTTCGGCAGTTGGCTGAGGCATACAGAGTTCATTCCC
**
80231 AATCTAAGACTGGACTGGACCGAGGGTTGTGGCAGCACACTGAG
835 AATCTAAGACTGGACCAGACCGAGGGTTGTGGCAGCACACTGAG
* * * *
80275 GGGGACCCTGTCGATCCCCGGCTTGCGCATCCTGGCCCAT-TGGCCGGTTGAGCACCCGCACGAT
1 GGGGACCCGGTCGATCCCCGGCTCGCGCATCCT-GCCCATCTGGCCGGCTGAGCACCCACACGAT
* * *
80339 CATTTTGTGGGTTGACTTAGGCATGCGGAGTTCATTTCCAGTCTAAGCATATAGAGTTCACTCCC
65 CATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCACTCCC
* * * * * *
80404 AGTCTAAGATCGA-ATCGGATCGAGGGTTGTGGGTCCATAAGCTAGGCTCGGGCATGTGCTGGTG
130 AGTCTAAGAT-GAGACCGGACCGAGGGTTGCGGGTCCACAAGCTAGGCTCAGGCATGTGCTGCTG
* * * *
80468 TCGCA-TTTTTTTT-C-AC-CCA-GGCC-ACCATCGTCGGAGAACCTAACCGGCAGCAAT-GGGT
194 CCACATTTTTTTTTCCGACACCATCGCCGACCATCGTCAGAGAACCTAACCGGCAGCAATAGGG-
* * *
80526 TTC-GGCGA-T-C-GGGGGGTGTGCGAACAAGATGTGTGGTCGATGCTGGTACTTGGCCCTTATA
258 TTCAGGCGATTGCGGGGGGGTGTGCGAACAAGATGTGCGATCGATGCTGGTACTTGGACCTTATA
* * *
80587 TTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTCAGATTTTA
323 TTGGCCCCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTA
* * *
80652 CAGGTTTGTTGCCAGAAGCCATTATAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
388 CAGGTTTGCTGCCAGAAGCAATTAAAG-GTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
* *
80717 ATCCTATACACTTCTAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
452 ATCCTATACAATTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
80782 -TGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTT-AAAAAATCTTGAACCGTAAA
516 CT-TCTACCAAGTTTGGGGCCAAAAATACTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAA
** * *
80845 AAGTTTTGAAAATCGT-AAAAAATAGAAAACGAATCGTCTTGCCTTGAAACTTCACATGAAGGCT
580 AAGTTTCAAAAATCGTGAAAAAA-AGAAAACGAATCGTCCTGCCATGAAACTTCACATGAAGGCT
** *
80909 TAAGGGACTTTTGTATGTATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAGAT
644 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAGAT
* * * * * *
80974 GTGCCTAAACCCACCTACCACCCTATCGA-TCGATGGCTTGCGTATCCTGTCTCTCTGG-CTGAC
709 GTGCCTAAACCAACCTACCACCCTATCGATTC-ACGGCTTGCGCATCCCGCCTCTATGGCCTG-C
* * *
81037 ATAATG-CCAGCCCGGCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCA
772 ATAATGCCCA-CCCGCCCGCCCGCTCGTTTCGGCAGTTGGCTGAGGCATACAGAGTTCATTCCCA
*
81101 ATCTAAGATTGGACCAGACCGAGGGTTG
836 ATCTAAGACTGGACCAGACCGAGGGTTG
81129 CGGGTGCACA
Statistics
Matches: 757, Mismatches: 87, Indels: 40
0.86 0.10 0.05
Matches are distributed among these distances:
868 141 0.19
869 317 0.42
870 73 0.10
876 1 0.00
877 8 0.01
878 29 0.04
880 3 0.00
881 3 0.00
882 1 0.00
886 1 0.00
888 8 0.01
889 166 0.22
890 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (878 bp):
GGGGACCCGGTCGATCCCCGGCTCGCGCATCCTGCCCATCTGGCCGGCTGAGCACCCACACGATC
ATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCACTCCCA
GTCTAAGATGAGACCGGACCGAGGGTTGCGGGTCCACAAGCTAGGCTCAGGCATGTGCTGCTGCC
ACATTTTTTTTTCCGACACCATCGCCGACCATCGTCAGAGAACCTAACCGGCAGCAATAGGGTTC
AGGCGATTGCGGGGGGGTGTGCGAACAAGATGTGCGATCGATGCTGGTACTTGGACCTTATATTG
GCCCCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAG
GTTTGCTGCCAGAAGCAATTAAAGGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCC
TATACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCT
ACCAAGTTTGGGGCCAAAAATACTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTT
CAAAAATCGTGAAAAAAAGAAAACGAATCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAGATGTGCCTA
AACCAACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGCCTCTATGGCCTGCATAATGCCC
ACCCGCCCGCCCGCTCGTTTCGGCAGTTGGCTGAGGCATACAGAGTTCATTCCCAATCTAAGACT
GGACCAGACCGAGGGTTGTGGCAGCACACTGAG
Found at i:81757 original size:26 final size:26
Alignment explanation
Indices: 81721--81773 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
81711 GTTGACTTAG
81721 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
81747 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
81773 G
1 G
81774 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:82643 original size:26 final size:26
Alignment explanation
Indices: 82607--82659 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
82597 GTTGAGTTAG
82607 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
82633 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
82659 G
1 G
82660 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:83524 original size:26 final size:26
Alignment explanation
Indices: 83488--83540 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
83478 GTTGACTTAG
83488 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
83514 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
83540 G
1 G
83541 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:85972 original size:889 final size:891
Alignment explanation
Indices: 84213--88219 Score: 4881
Period size: 891 Copynumber: 4.6 Consensus size: 891
84203 GCCCGCCCGG
* *
84213 CCGCACGCTCGTTTCATGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGCATACGAAG
1 CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AG
* * *
84278 TTCATTCCTAGTCTAAGATCGGACTGGATCGAGGGATGCGGGTGCACATGCTGGGCTCGGGCATG
65 TTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGGTGCACATGCAGGGCTCGGGCATG
* * * *
84343 TGCTGGTGCCGT-ATTTTTTTTCGCCCGGGGCACAATAGCCAGAGAACCT-AACCGACAGCATT-
130 TGCTGGTGCC-TCATTTTTTTTCGCCCGAGGCACAATCGCCAGAGAACCTGAACAGACGGCATTG
* *
84405 CGGGTTCTGACAATTGGGGGGGC-GGGGGGTGTGCGCACCTGATGTGCGATGGGTGCTGGTACTT
194 C-GGTTCCGACAATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * *
84469 GGCCCTTATATTGGCCCTCTATCCCTCATGAAACCTCAAGAACTCACACCCCCTTAAAGACCATT
258 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
84534 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTATTTAAAATGGGGACACTTTTTTCAAA
323 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
84599 TGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGAATGCCAAAAAAAAT
388 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAAT
* * **
84664 ACAAGGATCATGTCTACCATGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTG
452 ACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
* * *
84729 AATCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACA
517 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* *
84794 TGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAAT
582 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* *** * *
84859 ATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCATTACTTGCGCATCCTGCCTCTCTG
647 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTG
* *
84924 GCCGACGTAGTGCCCGCCCGCCCGACCGCTCGTTTCGTCGGTTGGCATAGGCATACAGAGTTCAT
712 GCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
* ** ** * ** **
84989 TCCCAGTCTAAGATCAGATCGGATTGAGGGTTGGGGTAGCAGGATCGGCAGCACGTAGAAAGGGA
777 TCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGA
* * * * * * *
85054 TCCGACTGATCCCCGACTTACGCATCCTACCCCTCTGGCCGGCAGAGCGC
842 CCCGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCGACTGAGCGC
* * *
85104 TCGCACGCTCATTTCATGGGTTGACTTAGGCAAACGGAGTTCGTTCCCAGTCTAAGCATACAGAG
1 CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG
* * * *
85169 TTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGGAGCACATACAGGGCTCGAGCATG
65 TTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGGTGCACATGCAGGGCTCGGGCATG
* * * * * **
85234 TGCTGGAGCCTAATTTTTTTTCGCCCGGGGTACAATCG-CATAGAACCTGTTCAG-CGGCATTGC
130 TGCTGGTGCCTCATTTTTTTTCGCCCGAGGCACAATCGCCAGAGAACCTGAACAGACGGCATTGC
* * *
85297 GATTCCGACGATTGGGGGGGCGGGGGGGTGGGCGCACATG-TGTGCGATGGGTGCTGGTACTTGG
195 GGTTCCGACAATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
85361 CCCTTATATTGGCCCCCTATCTCTCATGAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
260 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
85426 AGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
325 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
85491 GTCAAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
390 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
*
85556 AGGATCACGTCTACCAATTTTGCGG-CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAA
455 AGGATCACGTCTACCAAGTTTG-GGACCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAA
**
85620 CCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
519 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
* * *
85685 ATA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGTATTGGCATTGCAGAAATA
584 A-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
* **
85749 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCACATCTTGCCTCTCTGG
648 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGG
* ** *
85814 CTGGA-GTAGTGCCCGCCCGCCCGCCCATTCGTTT-GATCGGTTGGCTTAGGCATACGGAGTTCA
713 C-CGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACAGAGTTCA
* * *
85877 TTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAGTAGTAGGACCGGCAGCACACAGAGGGGG
776 TTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGG
* * * *
85942 ACCCTACCGATCCCTGGCTTGCGTATCCTA-CCCTCTGGCCGATTGTGCGC
841 ACCCGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCGACTGAGCGC
* * * ** ** * * * *
85992 CCGTACACTCGTTTTGTGGGTCAACTTAGGCATATGGAGTTCATTCCCAGGCTAAACATATGGAG
1 CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGAG
*
86057 TTCATTCCCAGTCTAAGATCGGA-TCGGATTGAGGGTTGCGGGTGCACATGCTA-GGCTCGGGCA
65 TTCATTCCCAGTCTAAGATCGGACT-GGATCGAGGGTTGCGGGTGCACATGC-AGGGCTCGGGCA
* * * * * * *
86120 TGTGTTGGTGCCGCATTTTTTTTCACCTGAGGCACCATCGCCGGAGAACCTG-ACTGACGGCATT
128 TGTGCTGGTGCCTCATTTTTTTTCGCCCGAGGCACAATCGCCAGAGAACCTGAACAGACGGCATT
* * * * *
86184 GGGGTTTCGACAAGTGGGGGGCGGGGGGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGT
193 GCGGTTCCGACAA-T--TGGG-GGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
86249 ACGTGACACTTATATTGGCCCCCTATCCCCCA-CAAACCTCGAGAACTCACA-CCCCTTAAAGAG
254 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * * *
86312 CATTTCAGATTTTACAGGTTTGCTGCTAGTTGCCCTTAAAGTGCCTGAAATGGGGACACTTTTTT
319 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
86377 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG-ACTTTTTTGTGCATGCCAAAATA
384 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * * *
86441 AATACGAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATC
449 AATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* *
86506 TCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
514 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
86571 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGGCAAA
579 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
** * * * *
86636 AATATGAAGATGCACCTAAA-CCACCAACCACCCTATCGATCCACGGCTTGCGCATCGCACCTCT
644 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCT
* * * *** * *
86700 CTGGCCGACGTAGTGCTCACCTGCCCATTCGCCCGTTTCGTCGGTTAGCTTAGGCATACAGAGTT
709 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
* * * * * * *
86765 CATTCTCAGTCTAAGATCAGATCGAACCGAGGGTTGTGGCAGCAGGATCGGCAACGCA-ATGAGG
774 CATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACA-GAGG
* * * *
86829 GGGACCCGACCGATCCCTGGCTTGCACATCTTGCCCCTCTGGCCGGCTGAGCGC
838 GGGACCCGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCGACTGAGCGC
* *
86883 CCGCACGCCCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-AG-
1 CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGT
*
86944 --ATT----G-----GAT----C---A---AGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGT
66 TCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGGTGCACATGCAGGGCTCGGGCATGT
* * * * * *
86988 GCTGGTG--TCATATTTTTTT-GCCCGAGGCACCATCCCCGGAGAACCTGATCAG-CGACATTGG
131 GCTGGTGCCTCAT-TTTTTTTCGCCCGAGGCACAATCGCCAGAGAACCTGAACAGACGGCATTGC
* * * *
87049 GGTTCCAACGATTGGGGGAGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
195 GGTTCCGACAATTGGGGG-GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
87114 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACAACCCCTTAAAGAGCATTT
259 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
87179 GAGATTTTACAGGTTTGCTGCCAATAGCCATTATAGTGTCTGAAATGGGGACACTTTTTTCAAAT
324 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
87244 GGTCACAAAATCCTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
389 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * * ** *
87309 AAGGATCACGTCTACTAGGTTTGGGACCAAAAATCCATCTGAAAAAATTTTTTAAAAATCCTGAA
454 AAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAA
* * * * * * *
87374 CCGTAAAATGTTTCCAAAATCATGAAAAATAGAAAATGAGTCATCTT-CTCATAAAACTTGACAT
519 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC-CATGAAACTTCACAT
* * * *
87438 GAAGGCTTGAGGGACCATTGTATGAATCTACAAGCCATAAAAGTGGCATTGGCATGGTAGAAATA
583 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
* *
87503 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGCCTCTTTGG
648 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGG
* *
87568 CCGACGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
713 CCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT
* * * * * ** *
87633 TCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCATGCTGAGGGGGAC
778 CCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGAC
* *
87698 CCGACCGAT-CCTAGGCTTGCGCATCC-AGCACCTCTGGCCAACTGAGCGC
843 CCGACCGATCCCT-GGCTTGCGCATCCTA-CCCCTCTGGCCGACTGAGCGC
*
87747 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG-AT-C-AG
1 CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACGAG
* *
87808 ---A---CC-G----A-AT----C---A---AGGATTGC----G-A-GTGCA-----CGGGCATG
65 TTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGGTGCACATGCAGGGCTCGGGCATG
* * * * * * * * *
87840 TGTTGGTG--TCGTATTTTTTTCGCCCGGGGCACCATCCCCAAAGAACTTGATC-GACGACATTG
130 TGCTGGTGCCTCAT-TTTTTTTCGCCCGAGGCACAATCGCCAGAGAACCTGAACAGACGGCATTG
* * * * *
87902 GGGTTCCAACGATTGGGGGAGGC-GGGTGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
194 CGGTTCCGACAATTGGGGG-GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
87966 GGCCCTTATATTGGCTCCCTATGCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
258 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
88031 TGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAA
323 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * * *
88096 TGGTCACGAAATCCTGTACACTTC-ACGTTTTTAGCTGAATTGTTTTATGCATACCCACAAAAAT
388 TGGTCACAAAATCCTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
* * * * *
88160 ACAAGGATCACATTTACCAAGTTTGGGGCCAAAACTCATTCTGAAAAAATTTAAAAAAAA
452 ACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
88220 GCTCTTTTCG
Statistics
Matches: 2733, Mismatches: 338, Indels: 128
0.85 0.11 0.04
Matches are distributed among these distances:
852 1 0.00
853 293 0.11
854 58 0.02
858 3 0.00
859 3 0.00
860 69 0.03
861 18 0.01
862 112 0.04
863 258 0.09
864 262 0.10
865 39 0.01
868 1 0.00
875 3 0.00
880 1 0.00
884 3 0.00
887 3 0.00
888 154 0.06
889 412 0.15
890 391 0.14
891 450 0.16
892 115 0.04
893 39 0.01
894 45 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGT
TCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGGTGCACATGCAGGGCTCGGGCATGT
GCTGGTGCCTCATTTTTTTTCGCCCGAGGCACAATCGCCAGAGAACCTGAACAGACGGCATTGCG
GTTCCGACAATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
GGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACC
GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCG
ACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
AGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCG
ACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCGACTGAGCGC
Found at i:86058 original size:26 final size:26
Alignment explanation
Indices: 86022--86072 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
86012 TCAACTTAGG
86022 CATATGGAGTTCATTCCCAGGCTAAA
1 CATATGGAGTTCATTCCCAGGCTAAA
*
86048 CATATGGAGTTCATTCCCAGTCTAA
1 CATATGGAGTTCATTCCCAGGCTAA
86073 GATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAGGCTAAA
Found at i:88273 original size:26 final size:26
Alignment explanation
Indices: 88243--88295 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
88233 GTTGACTTAG
*
88243 GCATAAGGAGTTCGTTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
88269 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
88295 G
1 G
88296 ATCGGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:89175 original size:26 final size:26
Alignment explanation
Indices: 89139--89191 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
89129 CTTGACTTAG
89139 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
89165 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
89191 G
1 G
89192 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:91802 original size:26 final size:26
Alignment explanation
Indices: 91765--91817 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
91755 GTTTACTTAG
91765 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
* *
91791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
91817 G
1 G
91818 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:92440 original size:889 final size:886
Alignment explanation
Indices: 90028--96035 Score: 6435
Period size: 887 Copynumber: 6.8 Consensus size: 886
90018 GTTGACTTAG
* ** * * *
90028 GCATAAGGAGTTCATTCCCTA-TCTAAGATCAGACTAGACTGAGGGTT-CTGGGTGCACATGTTG
1 GCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCAGGG-GCACATGCTG
* ** * * * * * * * *
90091 GACTCCAGCATGTGCTGGTGTCGCA-TTTTTTTCACCCGGGGCACCATCGCCGGAGAACTTGATC
64 GGCTCGGGAATGTGCTGGTGCCACATTTTTTTTCGCCCGGGCCACCATCTCCGGAGAACCTGACC
* * * *
90155 GGCAGCATTGGGGTTCCGGCAATTGGGGGGCCAGGGGGGGTGTGCGCACATGGTGTGCAATGGGT
129 GACGGCATTGGGGTTCC-GCAATTGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
90220 GCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
192 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACA-CCCCTT
90285 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
255 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
90350 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGG
320 TTTTTTCAAATGGTCACAAAATCCTCTACACTTC-AGTTTTTAGCTGAA-TTTTTTTGTGCATGC
* *
90415 CAACAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
383 CCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAA
** * * * * *
90480 AAAAATGTCGAACGGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGATTCGTCTTGCCATT
447 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
90545 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
512 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * * *
90610 CAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCC
577 TGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * * * *
90675 CGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCTACCTGCTCATTTCGTCGGTTAGCTTAGGCATA
642 CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATA
* * ** ** * * * * *
90740 CGGAGTTCATTCCTAGTTTAAGATCAGACTGGACCAAGGGTTGCAGCAGCAGGATCGACAGCACG
707 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAGGATTGGCAGCACA
* * * * *
90805 CTGAGGGGGA-CCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCA
772 CTGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCA
*
90869 CGCTCGTTTCGTAGGTTGAC-T-----TA-G--G--------CA---T--
837 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *** * *
90897 --A-A-GGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTTTTGGTGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGGGGCACATGCTGGG
* * * *** *
90958 CTCCGGCATGTGCTGGCGTGGCA-TTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGCCGGAG
66 CTCGGGAATGTGCTGGTGCCACATTTTTTTTCGCCC-GGG---C--CA-C----CATCTCCGGAG
* * *
91022 AACTTGATCGACGGCAGTGGGGTTCCGGCAATTGGGGGGCCAGGGGGGGTGT--GCACATGATGT
120 AACCTGACCGACGGCATTGGGGTTCC-GCAATTGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * * * **
91085 GCAATGGGTGCTGGTACTTGGCCCTTATA-TCGTCCCCTATCCCACATCAAACCTTGGGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCA
* * *
91149 CACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTATGGAA
247 CACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
91214 TGGGGACACTTTTTTCAAATGGTCACGAAATCCTGTACACTTCACCTTTTTAGCTGAATTGTTTT
311 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTTCA-GTTTTTAGCTGAATTTTTTT
* * * *
91279 ATGCGTGCCCACAAAAATACAAGGATCACGTTTACCAAGTTCGGGGCCAAAACTCCTTCTGAAAA
375 GTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * * * * *
91344 AATTTAAAAAAATCTCGAATCGTATAATGTTTCAAAAATTGTGAAAAATAGAAAACGAGTTGTCT
440 AATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
91409 TGCCATGAAATTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
505 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * *
91474 ATAGGCACCGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTA
570 ATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
91539 CGCATTCCGCCTCTCTGGCCGACGTAGTGCCCACCCGGCCGCCCACTCGTTTCTTCGGTTGGCTT
635 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTT
** * * ** * *
91604 AGGCATGTGGAGTTCATTCCCAATCTAAGATCGGACTGGACTGAGGGTTGTGGCAACTGGATTGG
700 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAGGATTGG
* *
91669 CAGCACACTGAAGGGGACCCGGCCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGTTGAGC
765 CAGCACACTGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* * *
91734 GCCCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGAAGTTCATTCCCACTCTAA
830 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
91791 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCAGGGGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGGGGCACATGCTGGG
* * *
91856 CTCGGGAATGTGCCGGTGCCCCA-TTTTTTTCGCCCAGGCCACCATCTCCGGAGAACCTGACC-A
66 CTCGGGAATGTGCTGGTGCCACATTTTTTTTCGCCCGGGCCACCATCTCCGGAGAACCTGACCGA
* * * * *
91919 GCGGTATTGGGGTTCCAGCAATTGGGGGGGCGGGGGGGTGTGCGAACATAATGTACGATGGGTGC
131 -CGGCATTGGGGTTCC-GCAATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
91984 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCATGAACTCACACCCCTTAAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCACACCCCTTAAA
*
92049 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
92114 TTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAAC
323 TTTCAAATGGTCACAAAATCCTCTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCCAC
* * * *
92179 AAAAATACAAGGATCACATCTGCTATGTTTGGGGCCAAAACTCCTTCTGAAAAAATATTAAAAAA
387 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT-TTAAAAAA
* * *
92244 ATCCCGAACTGTAAAAGGTTTCAAAAATCGTGAAAAATA-AAAGACGAGTCGTCTTGCCATGAAA
451 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA-ACGAGTCGTCTTGCCATGAAA
92308 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
515 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * * * * *
92373 AAAAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTACCGATCAATGGCTTGTGCATCCCGC
580 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * * * *
92438 CTCTCTGGTCGGCGTAGAGCCCACCCACCCGCCCGCTCGTTT-TGTCGATTGGCTTAGGCATACA
645 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCT-TCGGTTGGCTTAGGCATACG
* * * * * * ** * * *
92502 GAGTTCATTGCTAGTGTAAGATCAGACTAGA-TCGAAGGATGCGGCAGTAGAAATGGTAGCACAC
709 GAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAACAGGATTGGCAGCACAC
* ** * *
92566 TGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTTTCCCTGTGGCCGACTGAGCACCCGCAC
773 TGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCAC
*
92631 G--C---TC-----TT---TT---CAT--G--G-GCATTCCCAGTCTAA
838 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
92659 GCATAC-CAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGGG-GCACATGCTGG
* * * * * *
92722 GCTTGGGCATGTGCTGGTGTCGCATTTTTTTTCGCCCGGGGCACCATTGTCGAAGCATCACCGAA
65 GCTCGGGAATGTGCTGGTGCCACATTTTTTTTCGCCC-GGG--CCA----C----CATCTCCGGA
** * * * * *
92787 GAACCT-ATCCGGTGGCATTAGTGTTCTGACGATTGGGGAGGCCGGGGGGGTGTGCGCATATGAT
119 GAACCTGA-CCGACGGCATTGGGGTTCCG-CAATTGGGG-GGCCGGGGGGGTGTGCGCACATGAT
*
92851 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
181 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACT
* *
92916 CACACCCC--------C-----------T-CA----------AAG-AG-CATTAAAGTGTCTAAA
245 CACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * **
92949 ATGGGAACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAACCTTTT
310 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTTC-AGTTTTTAGCTGAATTTTTT
* *
93014 TGAGCATGCCCACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTGCC-TCTGAA
374 TGTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCTGAA
* *
93078 AAAATTTAAAAGAAATCCCAAACCGTAAAAAGTTTCCAAAATCATGAAAAATAG-AAACTGAGTC
438 AAAATTTAAAA-AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-GAGTC
* *
93142 GTCTTG-CGTGCACAACTT-ACA-GAATTGC-TAAGGGACCGATTGTATGAATTTAC-AGACCAT
501 GTCTTGCCATG-A-AACTTCACATGAA-GGCTTAAGGGACC-ATTGTATGAATTTACAAG-CCA-
* * * ** *
93202 TTAAAAATGGCATTGGCA---CTAGAAATA-GAAGATTGTGCCTACATCGTCCAACCACCCTA--
560 -TAAAAATGGCATTGGCATGGC-AAAAATATGAAGA-TGTGCCTAAACCCACCTACCACCCTATC
* * * ** * *
93261 GAT-----GCTTGTG-AT-CCGCCT-TCTGGCTGACGTAGTG---G---GCTTGACCG-T--TGT
622 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * **
93309 -TGCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-AAGATTAGACCGGACCCAGGGTTGCG
687 CTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCG
* * ** * *
93372 AC-A-AGGA-T--C-G-ACAATGCTCGGGGA---GACCGGAT-CCC--TTTGCG--T-CTGCCAC
752 GCAACAGGATTGGCAGCACACTG-AAGGGGACCCGACC-GATCCCCGACTTGCGCATCCTGCCCC
* * * * *
93421 -CT-G-CTGCTGAGCGCCCGCACGTTCATTT--TGGGTTGACTTAGGCAATACAAAG-T-ATTCC
815 TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-ATACGAAGTTCATTCC
93479 CAGTCTAA
879 CAGTCTAA
* * *
93487 GCATATGGAGTTCACTTCCCAGTCT-AGAT--GACCAGATCGAGGGTT--AGGGTGCACATGCTG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGGG-GCACATGCTG
* *
93547 GGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCCGGGCCACCATCGTCGGAGCATCGCCAG
64 GGCTCGGGAATGTGCTGGTGCCACATTTTTTTTCGCCCGGGCCACCATC-T-----C--CG---G
* *
93612 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGTGGGGGC-GGGGGGTGTGCGCACATGAT
118 AGAACCTGACCGACGGCATTGGGGTTCCG-CAATTGG-GGGGCCGGGGGGGTGTGCGCACATGAT
* *
93676 GTGCGATGGGTGCTGCTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
181 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACT
* *
93741 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTACCAGTAGCCATTAAAGTGTCTGA
245 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
93806 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTTCAATTTTTTAGCTGAATCTTT
309 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTTC-AGTTTTTAGCTGAATTTTT
* *
93871 TTGTGCATGCCCACCAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
373 TTGTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* ** *
93936 AAAATTTAAAAAAATCACAAACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTCGG
438 AAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
94001 CTTGCCATGAAACTTCACATGAAGGCTTAAGGCACCATTGT-TGAATTTACAAGCCATAAAAATG
503 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
94065 GCATTGGCATGGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
568 GCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
94130 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
633 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGC
** * * * *
94195 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGCAGCAGCAGGATT
698 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAGGATT
* * * * * **
94260 GGCAGCACGCT-AAGGGGGACCCGATCGATCCCCGGCTTGCACATCCTACCCCTCTGGCCAACTG
763 GGCAGCACACTGAA-GGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTG
** * * *
94324 AGCACCTACACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAA
827 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * ** * * **
94384 GCATACAGAGTTCATTCCCAGTCTTAGATCAGACTAGACCGGGGGTTG-TGAATGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-GGGCACATGCTGG
* * * * * * * * * * *
94448 GCTCGGGAATGTGCTGGTTCCCCAACTTTCTTT-GTCTGGGCCACCATCGCTGAAAAACGTGACC
65 GCTCGGGAATGTGCTGGTGCCAC-ATTTTTTTTCGCCCGGGCCACCATCTCCGGAGAACCTGACC
* * * *
94512 GACGGCATTGGGGTTCCGGCAATT-GGGGG-C--GAGGGTGTGTGCACATAATGTGCAATGGGTG
129 GACGGCATTGGGGTTCC-GCAATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
94573 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGTGAAGTCACACCCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACA-CCCCTTA
* * * *
94638 AAGAGCATTTGAGATTTCATAGGTTTTCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
256 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
94703 TTTTTCAAATGGTCAAAAAATCCTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCA
321 TTTTTCAAATGGTCACAAAATCCTCTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCC
* ** * *
94768 ACAGAAATACAAGGATCACGTCTACCAAGTTTGGGGTTAAAAATACTTCTGAAAAAATTTAAAAA
385 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-AAAA
*
94833 AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAA
449 AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
94898 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATG
514 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
94963 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCG
579 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
** * * ** * * * *
95028 GTTCTTTGGCTGGCGTAGTAACCGCCCGCCCGCCCGTTCATTTCATCGATTGGCTTAGGCATACG
644 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATACG
* * * * * ** **
95093 GAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGATTGTGGTAGCAGGATCAGCAGCACGTT
709 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAGGATTGGCAGCACACT
* ** * * **
95158 GAGGGGGACCCGTTCGATCCCTGGCTTATGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACG
774 GAAGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACG
* * *
95223 CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
839 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
95271 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACTGAGGGTTGCAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGGGGCACATGCTGGG
* * ** *
95336 CTCGGGTATGTGCTGGTGCCACA-TTTTTTTCACTGGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCGGGAATGTGCTGGTGCCACATTTTTTTTCGC-CCGGG--CCA-C--C--ATC-TC--CGGAG
*
95400 AACCTGACCGACGGCATTGGGGTTCCG-ATGATTGAGGGGGCCCGGGGGGGTGTGCGCATATGAT
120 AACCTGACCGACGGCATTGGGGTTCCGCA--ATTG-GGGGG-CCGGGGGGGTGTGCGCACATGAT
* *
95464 GTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
181 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACT
95529 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
245 CACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
95594 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTTCAATTTTTTAGCTGAATTTTT
309 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTTC-AGTTTTTAGCTGAATTTTT
* * *
95659 TTGTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACTAAAACTCCTCCTGAA
373 TTGTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * * * *
95724 AAATTTTAAAAAAATGCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCAT
438 AAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
95789 CTTGCCATGAAACTTCACATGAAGCCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATG
503 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
95854 GCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
568 GCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
95919 TGCGCATCCCGCCTCTCTGGTCGGCGTAGTGGCCGCCCACCCACCTGCTCGTTTCGTCGGTTGGC
633 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGC
* * * *
95984 TTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTG
698 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
96036 TGGGTACACA
Statistics
Matches: 4358, Mismatches: 536, Indels: 457
0.81 0.10 0.09
Matches are distributed among these distances:
810 15 0.00
811 1 0.00
812 2 0.00
813 4 0.00
814 1 0.00
815 5 0.00
816 5 0.00
818 9 0.00
819 4 0.00
820 5 0.00
821 9 0.00
823 5 0.00
824 2 0.00
825 92 0.02
826 85 0.02
827 36 0.01
828 48 0.01
829 14 0.00
830 10 0.00
831 1 0.00
832 5 0.00
834 1 0.00
838 12 0.00
839 6 0.00
840 2 0.00
841 7 0.00
845 1 0.00
846 5 0.00
847 30 0.01
848 234 0.05
849 9 0.00
850 19 0.00
854 17 0.00
856 46 0.01
857 72 0.02
858 164 0.04
860 2 0.00
861 1 0.00
863 6 0.00
864 3 0.00
865 84 0.02
866 24 0.01
867 70 0.02
868 31 0.01
869 4 0.00
871 300 0.07
872 147 0.03
873 145 0.03
874 39 0.01
875 3 0.00
876 97 0.02
877 22 0.01
878 4 0.00
879 41 0.01
880 91 0.02
881 2 0.00
882 1 0.00
883 6 0.00
884 5 0.00
885 268 0.06
886 112 0.03
887 426 0.10
888 221 0.05
889 403 0.09
890 3 0.00
891 6 0.00
892 7 0.00
893 1 0.00
894 22 0.01
895 8 0.00
896 28 0.01
897 61 0.01
898 79 0.02
899 18 0.00
900 44 0.01
901 8 0.00
902 278 0.06
903 253 0.06
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (886 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGGGGCACATGCTGGG
CTCGGGAATGTGCTGGTGCCACATTTTTTTTCGCCCGGGCCACCATCTCCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGCAATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACACCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCCTCTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCCACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCC
AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAGGATTGGCAGCACACTGAAGGGG
ACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:94388 original size:26 final size:26
Alignment explanation
Indices: 94358--94407 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
94348 GTTGACTTAG
* *
94358 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
94384 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
94408 TAGATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:95281 original size:26 final size:26
Alignment explanation
Indices: 95245--95296 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
95235 GTTGACTTAG
95245 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
95271 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
95297 AATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:96890 original size:26 final size:26
Alignment explanation
Indices: 96861--96913 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
96851 GTTGACTTAG
*
96861 GCATAC-GAAGTTCATTCCCAGTTTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
96887 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
96913 G
1 G
96914 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:97780 original size:26 final size:26
Alignment explanation
Indices: 97751--97803 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
97741 GTTGACTTAG
*
97751 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
97777 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
97803 G
1 G
97804 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:97871 original size:888 final size:886
Alignment explanation
Indices: 95990--98013 Score: 2899
Period size: 888 Copynumber: 2.3 Consensus size: 886
95980 TGGCTTAGGA
* * * * *
95990 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGGTACACATGCTGGCCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCT
* * * * * *
96055 CGAGCAGGTGCTGGTGCCGCATTTTTTTTCACCTGAGGCACCATCGCCGGAGCATCGTTGGAGAA
66 CGAGCATGTGCTGGTGGCACATTTTTTTAC-CCTG-GGCACCATCGCCGGAG-AAC-CT---G-A
* * * *
96120 CCTATCCGGCGACATTGGGGTTCCGACGATTGGGGGGCCAGAGGGTGTGCGCACATGATGTGCGA
123 CCGA--C-G-G-CATTGGGGTTTCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
96185 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
183 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * *
96250 CCGTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAAAATGGG
248 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
*
96315 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTACGAGTTTTTAGCTGAATTTTTTTGGGC
313 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTACGAGTTTTTAGCTGAATGTTTTTGGGC
* * *
96380 ATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAATGT
378 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAATGT
* * *
96445 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCCTGC
443 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCCTGC
*
96510 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
508 CATGAAACTTCACATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATT
*
96575 GGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
573 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
96640 ATCCCGCGTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTGATCGGTTGGCTTAGG
638 ATCCCGCCTCTCTGGCCGACGTAGTGCCCACCCACCTGCCCGCTCGTTTCATCGATTGGCTTAGG
** * * * * * * *
96705 CATATGGAGTTCTTTCCCAGTCTATGATCAAACTAGACCGAGGGTTGTGGCAGCAGGATTGGCAG
703 CATACAGAGTTCTTTCCCAGTCCAAGATCAAACCAGACCGAGGGTTGTCGCAGCAAGATCGGCAA
* * * *
96770 CACGCTGAGGGGACCCGACCGATCCCCGGCTTACGCATCTGCCCCTCTGGCCGACTGAGCGCCCG
768 CACGCTGAGGGGACCCGACCGATCCCCAGCTTACACATCTACCCCTCTGGCCGACTGAGCACCCG
* *
96835 CATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTTTAAGC
833 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
*
96889 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCT
* * ** * *
96954 CGAGCATGTGATGGTGCCGTATTTTTTTTTGCCCAGGGCACCATCGCCGGAGAACCTGACCGACG
66 CGAGCATGTGCTGGTG--GCACATTTTTTTACCCTGGGCACCATCGCCGGAGAACCTGACCGACG
* *
97019 GCATTGGGGTTTCGATGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
129 GCATTGGGGTTTCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
97084 ACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
194 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* *
97149 CATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
259 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* * *
97214 CAAATGGTCGCAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAA
324 CAAATGGTCACAAAATCCTGTACACTACGAGTTTTTAGCTGAATGTTTTTGGGCATGCCAAAAAA
97279 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAT-TTTAAAAAAAT
389 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTG-AAAAATGTTTAAAAAAAT
*
97343 C-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
453 CTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACT
*
97407 TCACATGAGGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
517 TCACATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
97472 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* **
97537 CTCTGGTCGGTGTAGTGCCCACCCACC-GCCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGA
647 CTCTGGCCGACGTAGTGCCCACCCACCTG-CCCGCTCGTTTCATCGATTGGCTTAGGCATACAGA
* *** * *
97601 GTT-TATTCCCTGTCCAAGATTGGACCAGATCGAGGGTTGTCGTAGCAAGATCGGCAACACG-TA
711 GTTCT-TTCCCAGTCCAAGATCAAACCAGACCGAGGGTTGTCGCAGCAAGATCGGCAACACGCT-
* * * *
97664 GAGGGGGACCCGATCGATCCCCAGCTTGCATATCCTACCCCTCTGGCCGTCTGAGCACCCGCACG
774 GA-GGGGACCCGACCGATCCCCAGCTTACACAT-CTACCCCTCTGGCCGACTGAGCACCCGCACG
* *
97729 CTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGC
837 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
* **
97779 ATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAATGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCT
* *
97844 CGAGCATGTGCTAGTGGCACATTTTTTTCACCCTGGGTACCATCGTCGGAGCATCACCGGAGAAC
66 CGAGCATGTGCTGGTGGCACATTTTTTT-ACCCTGGG---CA----C----CATCGCCGGAGAAC
* * * *
97909 CTGATCGGCGGCATTGGGGTTTCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTACGA
119 CTGACCGACGGCATTGGGGTTTCGACGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
97974 TGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCT
183 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
98014 GTCATAACGT
Statistics
Matches: 1006, Mismatches: 97, Indels: 43
0.88 0.08 0.04
Matches are distributed among these distances:
887 4 0.00
888 592 0.59
889 38 0.04
890 150 0.15
891 1 0.00
892 2 0.00
893 4 0.00
894 1 0.00
896 1 0.00
897 1 0.00
898 2 0.00
899 89 0.09
900 54 0.05
901 67 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (886 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCT
CGAGCATGTGCTGGTGGCACATTTTTTTACCCTGGGCACCATCGCCGGAGAACCTGACCGACGGC
ATTGGGGTTTCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCCTGTACACTACGAGTTTTTAGCTGAATGTTTTTGGGCATGCCAAAAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAATGTTTAAAAAAATCTC
GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCAC
ATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
GGCCGACGTAGTGCCCACCCACCTGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCT
TTCCCAGTCCAAGATCAAACCAGACCGAGGGTTGTCGCAGCAAGATCGGCAACACGCTGAGGGGA
CCCGACCGATCCCCAGCTTACACATCTACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
Found at i:98810 original size:15 final size:15
Alignment explanation
Indices: 98786--98816 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
98776 CAAATAAACG
98786 AAAAAGAAAAAAATA
1 AAAAAGAAAAAAATA
*
98801 AAAAATAAAAAAATA
1 AAAAAGAAAAAAATA
98816 A
1 A
98817 TAACAGATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (15 bp):
AAAAAGAAAAAAATA
Found at i:98815 original size:34 final size:32
Alignment explanation
Indices: 98754--98816 Score: 81
Period size: 34 Copynumber: 1.9 Consensus size: 32
98744 ACAGCCTCAA
* **
98754 AAAAAGAAAAAAAAATAATAATCAAATAAACG
1 AAAAAGAAAAAAAAAAAATAAAAAAATAAACG
98786 AAAAAGAAAAAAATAAAAAATAAAAAAATAA
1 AAAAAG-AAAAAA-AAAAAATAAAAAAATAA
98817 TAACAGATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 6 0.23
33 6 0.23
34 14 0.54
ACGTcount: A:0.81, C:0.03, G:0.05, T:0.11
Consensus pattern (32 bp):
AAAAAGAAAAAAAAAAAATAAAAAAATAAACG
Found at i:98856 original size:43 final size:43
Alignment explanation
Indices: 98796--98891 Score: 103
Period size: 43 Copynumber: 2.3 Consensus size: 43
98786 AAAAAGAAAA
* *
98796 AAATAAA-AAAT-AAAAAAATAATAAC-AGATAATCAAAAAT-A-
1 AAATAAATAAATCCAAAAAAT-ATAACAAGATAA-AAAAAATAAT
*
98836 AAATAAGATAAATCCAAAAAATATTACAAGATAAAAAAAATAAT
1 AAATAA-ATAAATCCAAAAAATATAACAAGATAAAAAAAATAAT
98880 AAATAAATAAAT
1 AAATAAATAAAT
98892 TATAATATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
40 6 0.13
41 1 0.02
42 14 0.30
43 20 0.43
44 6 0.13
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.20
Consensus pattern (43 bp):
AAATAAATAAATCCAAAAAATATAACAAGATAAAAAAAATAAT
Found at i:99028 original size:74 final size:78
Alignment explanation
Indices: 98880--99056 Score: 192
Period size: 74 Copynumber: 2.3 Consensus size: 78
98870 AAAAAATAAT
*
98880 AAATAAATAAATTATAATATAATAATAAATATATAACTATATAAATAAAATACATATAAATATTA
1 AAATAAATAAAATATAATATAATAATAAATATATAACTATATAAATAAAATACATATAAATATTA
98945 ACAAAACAAAAAA
66 ACAAAACAAAAAA
* * * *
98958 AAATAAATAAAGATATACATATATTAATACATA-GTAA-TA-ATAAAT-AAATA-ATA-AAATGC
1 AAATAAATAAA-ATATA-ATATAATAATAAATATATAACTATATAAATAAAATACATATAAAT-A
*
99017 TTAA-AATACAAAAAA
63 TTAACAAAACAAAAAA
* *
99032 ATAGAAATAAAA-ATAATATAA-AATA
1 AAATAAATAAAATATAATATAATAATA
99057 GGAACCGAAT
Statistics
Matches: 87, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
70 4 0.05
71 5 0.06
72 3 0.03
73 1 0.01
74 23 0.26
75 7 0.08
76 5 0.06
77 6 0.07
78 13 0.15
79 7 0.08
80 13 0.15
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (78 bp):
AAATAAATAAAATATAATATAATAATAAATATATAACTATATAAATAAAATACATATAAATATTA
ACAAAACAAAAAA
Found at i:99244 original size:26 final size:27
Alignment explanation
Indices: 99215--99266 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
99205 CATTTTCACT
*
99215 TTTTTGTTTTTTGTGTTTTT-TTTTTA
1 TTTTTATTTTTTGTGTTTTTGTTTTTA
*
99241 TTTTTATTTTTTTTGTTTTTGTTTTT
1 TTTTTATTTTTTGTGTTTTTGTTTTT
99267 GAACAAAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.04, C:0.00, G:0.10, T:0.87
Consensus pattern (27 bp):
TTTTTATTTTTTGTGTTTTTGTTTTTA
Found at i:99368 original size:41 final size:42
Alignment explanation
Indices: 99274--99447 Score: 253
Period size: 42 Copynumber: 4.1 Consensus size: 42
99264 TTTGAACAAA
* *
99274 GCTCCTCTAAACAGAGGCTCAACGAC-TTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-ATAAATT
* *
99317 GCTACTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
* *
99358 GCTCCTCTAAACAGAGGCACCATGACTTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
*
99400 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
99442 GCTCCT
1 GCTCCT
99448 TGACAAACAT
Statistics
Matches: 119, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
41 30 0.25
42 62 0.52
43 27 0.23
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
Found at i:99433 original size:84 final size:84
Alignment explanation
Indices: 99274--99447 Score: 280
Period size: 84 Copynumber: 2.1 Consensus size: 84
99264 TTTGAACAAA
*
99274 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTACTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAACATAAATTGCTACTCTAAACAGAGGCACCA
99339 CGACTTTGGAAAGTAAATT
66 CGACTTTGGAAAGTAAATT
* * *
99358 GCTCCTCTAAACAGAGGCACCATGACTTTTGA-AAA-ATAAATTGCTCCTCTAAACAGAGGCACC
1 GCTCCTCTAAACAGAGGCACAACGAC-TTTGAGAAACATAAATTGCTACTCTAAACAGAGGCACC
99421 ACGACTTTTGGAAAGTAAATT
65 ACGAC-TTTGGAAAGTAAATT
99442 GCTCCT
1 GCTCCT
99448 TGACAAACAT
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
83 32 0.38
84 47 0.56
85 5 0.06
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (84 bp):
GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAACATAAATTGCTACTCTAAACAGAGGCACCA
CGACTTTGGAAAGTAAATT
Found at i:101088 original size:46 final size:46
Alignment explanation
Indices: 101011--101102 Score: 105
Period size: 46 Copynumber: 2.0 Consensus size: 46
101001 CCGCCCGTCA
* * *
101011 GCCCACTCGTTTCATCGATTGGCATAGGCATATGGATTTCATTCCC
1 GCCCACTCGTTTCATCGATTGGCATAGGCATACGGAGTTCAATCCC
* * * *
101057 GCCCGCTCTTTTCATCGTTTGGC-TTGAGCATACGGAGTTCAATCCC
1 GCCCACTCGTTTCATCGATTGGCATAG-GCATACGGAGTTCAATCCC
101103 AGTCTAAGAT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
45 2 0.05
46 36 0.95
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (46 bp):
GCCCACTCGTTTCATCGATTGGCATAGGCATACGGAGTTCAATCCC
Found at i:101279 original size:26 final size:26
Alignment explanation
Indices: 101243--101294 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
101233 TTGACTTAGC
* *
101243 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
101269 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
101295 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:102171 original size:26 final size:26
Alignment explanation
Indices: 102135--102187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
102125 GTAGACTTAG
*
102135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
102161 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
102187 G
1 G
102188 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:103054 original size:26 final size:26
Alignment explanation
Indices: 103018--103067 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
103008 GTTGACTTAG
*
103018 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATCCCCAGTCTCA
103044 GCATACGGAGTTCATCCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
103068 AAGATTCGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTCA
Found at i:103457 original size:882 final size:875
Alignment explanation
Indices: 101054--105524 Score: 5506
Period size: 882 Copynumber: 5.1 Consensus size: 875
101044 GGATTTCATT
* * * * *
101054 CCCGCCCGCTCTTTTCATCGTTTGGCTT-GAGCATACGGAGTTCAATCCCAGTCTAAGATCGAAC
1 CCCGCCCGCTCGTTTCATCGGTTGGCTTAG-GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
* * * * * * * *
101118 CAAACTGAGGGTTACGGTAGCAGGATTGGCAACACACTGAGGGGGACCCGA-CCATCTCCAGCTT
65 CAGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTT
* * * * * *
101182 GTGCATCCTACCCCTCTAGCCTGCTGAGCGCCCGCACACTCGCTTCGTGGGTTGACTTAGCCATA
130 GCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
101247 CGGAGTTCATTCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGG
195 CGGAGTTCATTCCCAGTCT-AGCATAC-GAGTTCA-TCCCAGT-TAAGAT--GACCAGACCGAGG
* **
101312 GTTGCGGGTGCACATTCTGGGCTCGAG-ATGTGCTGGCT-CCGCATTTTTTTTTGCCCG-GGCCA
254 GTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGG-TGCCGCATTTTTTTTCACCCGAGG-CA
* * *
101374 CCATTGTCGGAGCATCACCGAAGAACCTGACCGGCGGCATTG-GGATTCCGACGATTGGGGGG-T
317 CCA---T----GCAT---CGGAGAACCTGACCGACGGCATTGCGG-TTCCGACGATTGGGGGGCG
*
101437 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
371 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCC
* * * *
101502 CTCATCAAACCTCGAGAACTCACAACCCCTTAAAGTGCATTTAAGATTTTACAGGTTTGCTACCA
435 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
101567 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
500 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* * *
101632 GAGTTTTTAGCTGAAGTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTT
565 GAGTTTTTAGCT-AAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
*
101696 GGGGCCAAAACTCCTTCTGAAAGAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCG
629 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCG
*
101761 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
694 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
*
101826 GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCT
759 GAATTTACAAGCCATAAAAATGGCATTGGCAT-GAAAAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
101891 ACCACCCTATCGATCCATGGCTTGTGCTTCCCGCCTCTCTGGCCAGCCTAGTG
823 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG
* ** *
101944 CCCGCCCGCCGCTCATTTTGTCGGTT-GCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATTGG
1 CCCG--C-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * * **
102008 ATCAGACTGAGGGTTATGGCAGCAGGATCGGTAGCACGCTGAAGGGGG-CCC-AGTCGATCCCCG
63 ACCAGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCTG-AGGGGGACCCGA-TCGATCCCCG
* * ** * * *
102071 GCTTGCGCATCCTACCCCTTTGGCTGGCTGAATGCCCACACGCTCGATTCGTGGGTAGACTTAGG
126 GCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
102136 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCCCAGTGTAAGATTAGACCAGACC
191 CATACGGAGTTCATTCCCAGTCT-AGCATAC-GAGTTCAT-CCCAGT-TAAGA-T-GACCAGACC
* * * ** *
102201 GAGGGTTACGGGTGGACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTTTTTTCTCGAGG
250 GAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGAGG
* *
102266 CACCAT-CGTCGGAGAACCTGACCGACGGCATTGCGGTTCCGGCGATTTGGGGGGCGGGGGAGGT
315 CACCATGCATCGGAGAACCTGACCGACGGCATTGCGGTTCCGACGA-TTGGGGGGCGGGGG-GGT
* * *
102330 GTGCGCACATGATGCGCGATGGGTGCTGGTACTTGGCCCTCATAATGGCCCCTATCCCTCATCAA
378 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAA
** * *
102395 ACCTTAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAT
443 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
102460 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACATCGAGTTTTT
508 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
* * * *
102525 GGCTAAATTGTTTTGTGCATGCCAAGAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAG
573 AGCTAAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
102590 ACTCCTTCTGAAAAAATTTAAAAAAAATCTCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATA
638 ACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
*
102655 GAAAACGAGTCGTCTTACCATGAAACTTCACATGAAGGCTTACA-GGACCATTGTATGAATTTAC
703 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA-AGGGACCATTGTATGAATTTAC
*
102719 AAGCCATAAAAATGGCATTGGCATGAAAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCT
767 AAGCCATAAAAATGGCATTGGCATGAAA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
102784 ATCGATCCATGGTTTGCGCATCCCGCCTCTTTAGACGGCGTAGTG
831 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG
* * * *
102829 CCCGCCCGTTTGTTTCATCTGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
1 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
** * * * *
102894 AGACCAAGGGTTGCAGTAGCAGGATCAACAGCACGCTGAGGGGGGCCCGATCGATCCCCGGCTTG
66 AGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTG
* * * *
102959 TGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTTGTGGGTTGACTTAGGCATAC
131 CGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
103024 GGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATCCCCAGTCTAAGATTCGACCAGACCAAGGG
196 GGAGTTCATTCCCAGTCT-AGCATAC-GAGTTCAT-CCCAGT-TAAGA-T-GACCAGACCGAGGG
* * * * *
103089 TTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCACGAGGCACCA
255 TTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGAGGCACCA
* * *
103154 T-CATCGGAGAACTTGACCGACGGCATTACGGTTCCGGCGATTGGGGGGCGGGGGAGGTGTGCGC
320 TGCATCGGAGAACCTGACCGACGGCATTGCGGTTCCGACGATTGGGGGGCGGGGG-GGTGTGCGC
* * * *
103218 ACATGATGCGCGATGGGTGCTGGTACTTAGCCCTCATAATGGCCCCTATCCCTCATCAAACCTCG
384 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCG
103283 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
449 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
** * *
103348 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACATCGAGTTTTTGGCTAA
514 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAA
*
103413 ATTGTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
579 ATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * *
103478 TCTGAAAAAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAT
644 TCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * *
103543 GAGTTGTCTTACCATGAAACTTCACATGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCAT
709 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
103608 AAAAATGGCATTGGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
774 AAAAATGGCATTGGC-ATGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
103673 CACGGCTTGCGCATCCTGCCTCTTTGGTCGGCGTAGTGCCCGCCCG
838 CACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT--------G
* * * * *
103719 CCCGCCCGCTCATTTCATCAGTTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAA-CTTCAGAC
1 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GGAC
** * * * *
103783 TGGACTGAGGGTT---GT-----G---G-CAGCATGCTAAGGGGGACCCGACCGATCCCCAGCTT
65 CAGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTT
* * * *
103836 GCGCATCCTACCCCTTTGCCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
130 GCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
103901 CGGAGTTCATTCCTAG--T-G--TA--AG---AT--C-G----G--G-CCAGACCGAGGGTTGCA
195 CGGAGTTCATTCCCAGTCTAGCATACGAGTTCATCCCAGTTAAGATGACCAGACCGAGGGTTGCG
* * * *
103946 GGTGCACATTCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCACCTGGGGCACCATCGCC
260 GGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGAGGCACCAT----
* ** * * **
104011 AGAGCATTATCGAAGAACCTGACCGATAGCATTGCGGTTCTGTCGATTGGGGGGGCCAGGGGGTG
321 ---GC---ATCGGAGAACCTGACCGACGGCATTGCGGTTCCGACGATT-GGGGGGCGGGGGGGTG
* * * * *
104076 TGCACACATGTTGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCTATTCCTCATCAAA
379 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAA
* *
104141 CCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATT
444 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
104206 AAAGTGTCTGAAAT-GGGACACCTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
509 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* *
104270 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
574 GCTAAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
104335 CTCCTTCTGAAAAAATTTT-AAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
639 CTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
104399 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
704 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
104464 GCCATCAAAATGGCATTGGCACT-ACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
769 GCCATAAAAATGGCATTGGCA-TGA-AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
104528 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTACCG
832 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG-T---G
* * *
104576 CACGCTCGCCTGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTG
1 --C-C-CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
** * * * * * * *
104641 GACCAGACCAAGGGTTGCGGTAGTAGGATCGACAGCATGCAGAGGGGGAACCGGTCGATCCCCGA
62 GACCAGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGATCGATCCCCGG
* * * * *
104706 CTTGCGCATCTTGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGC
127 CTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
104771 ATATGGAGTTCATTCCAAGTCT---A-A-GA--T--T----G----GAT---CAGACCGAGTGTT
192 ATACGGAGTTCATTCCCAGTCTAGCATACGAGTTCATCCCAGTTAAGATGACCAGACCGAGGGTT
* * * *
104816 GCGGGTGCACATGCTGGGTTCGGGCATGTGCTGGTGCCAC-TTTTTTTTCACCCGGGGCACCATC
257 GCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGAGGCACCA--
* *
104880 GTCGGAGCATTTTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGG
320 -T----GCA---TCGGAGAACCTGACCGACGGCATTGCGGTTCCGACGATT-GGGGGG-CGGGGG
*
104945 GGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCA
375 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCA
* *
105010 TTAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
439 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
105075 CTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
504 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
* * *
105140 TTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
569 TTTTAGCTAAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
105205 CAAAAATCCTTCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAATTTTCAAAAATCGTGAAA
634 CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAA
* *
105270 AATAGAAAACGAGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACCTTTGTATGAATT
699 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
* * * * * *
105335 TACATGCCCTAAAAATGGCATTGGCATGGTATAAATATGAAGATGTGCCGAAACGCACCTACCAC
764 TACAAGCCATAAAAATGGCATTGGCAT-GAAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * ** * **
105400 CCTATTGATTCACGGCTTATGCATCCTGTCC-CTCTGGCCGGC-TGAGCA
828 CCTATCGATCCACGGCTTGCGCATCCCG-CCTCTCTGGCCGGCGT-AGTG
* * * ** *
105448 CCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
1 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
*
105513 AGAGTGAGGGTT
66 AGACTGAGGGTT
105525 GCAGGTGCAC
Statistics
Matches: 3177, Mismatches: 318, Indels: 194
0.86 0.09 0.05
Matches are distributed among these distances:
852 67 0.02
853 1 0.00
857 4 0.00
859 1 0.00
860 3 0.00
861 259 0.08
862 130 0.04
863 171 0.05
864 12 0.00
866 2 0.00
868 63 0.02
869 5 0.00
870 1 0.00
872 68 0.02
873 202 0.06
874 92 0.03
875 136 0.04
876 192 0.06
877 1 0.00
878 103 0.03
882 507 0.16
883 331 0.10
884 18 0.01
885 413 0.13
886 55 0.02
887 2 0.00
889 2 0.00
890 67 0.02
891 2 0.00
892 70 0.02
893 164 0.05
894 31 0.01
895 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
AGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTG
CGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAGCATACGAGTTCATCCCAGTTAAGATGACCAGACCGAGGGTTGCGG
GTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGAGGCACCATGCATC
GGAGAACCTGACCGACGGCATTGCGGTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTGTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
AAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGCCTCTCTGGCCGGCGTAGTG
Found at i:106341 original size:58 final size:58
Alignment explanation
Indices: 106267--106697 Score: 471
Period size: 59 Copynumber: 7.2 Consensus size: 58
106257 TCTTGCGCAT
* * *
106267 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTTATTTTTA-A
* *
106325 GGAAGATTGATACTTTCAACTTTT-CCTCAAAAAT-TGATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATAT--TTTTTTGAAATTTTATTTTTAA
* * *
106384 GGCAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--TT-TTTTT-GAAATTTT-ATTTTTAA
*
106447 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAAGCT-TTTTTTTTAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA--TATTTTTTTGAAATTTTATTTTTAA
* * * * *
106506 GGAATATTAATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAA-TTTTATTTTTAA
*
106566 GGAAGATTGATACTTTCAACTTTT-CCTCAAAAACT-TTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA-TATTTTTTTGAAATTTTATTTTTAA
* * *
106624 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATTTTTTTTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA---TATTTTTTT-GAAATTTTATTTTTAA
106686 GGAAAATTGATA
1 GGAAAATTGATA
106698 AGGAAAATTG
Statistics
Matches: 320, Mismatches: 28, Indels: 46
0.81 0.07 0.12
Matches are distributed among these distances:
57 5 0.02
58 74 0.23
59 87 0.27
60 61 0.19
61 18 0.06
62 39 0.12
63 35 0.11
65 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTTATTTTTAA
Found at i:106701 original size:13 final size:13
Alignment explanation
Indices: 106683--106710 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
106673 ACTTTATTTT
106683 TAAGGAAAATTGA
1 TAAGGAAAATTGA
106696 TAAGGAAAATTGA
1 TAAGGAAAATTGA
106709 TA
1 TA
106711 CTTTCAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.21, T:0.25
Consensus pattern (13 bp):
TAAGGAAAATTGA
Found at i:106767 original size:5 final size:5
Alignment explanation
Indices: 106759--106851 Score: 79
Period size: 5 Copynumber: 18.6 Consensus size: 5
106749 TTATTTAAAG
*
106759 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT -AAAAT AAAAT
* *
106805 AAAAT AAAGA- AAAGT AAAACA AAAAT AAAAT -AAA- AAAAT AAAAT AAA
1 AAAAT AAA-AT AAAAT AAAA-T AAAAT AAAAT AAAAT AAAAT AAAAT AAA
106852 GGTAAAAAGG
Statistics
Matches: 72, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
3 3 0.04
4 6 0.08
5 47 0.65
6 12 0.17
7 4 0.06
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:106794 original size:12 final size:11
Alignment explanation
Indices: 106759--106851 Score: 82
Period size: 11 Copynumber: 8.2 Consensus size: 11
106749 TTATTTAAAG
106759 AAAATAAAATAA
1 AAAATAAAAT-A
*
106771 TAAAACAAAATA
1 -AAAATAAAATA
*
106783 AAAGTGAAAATA
1 AAAAT-AAAATA
106795 AAAATAAAAT-
1 AAAATAAAATA
*
106805 AAAAT-AAAGA
1 AAAATAAAATA
* *
106815 AAAGTAAAACA
1 AAAATAAAATA
106826 AAAATAAAATAAA
1 AAAATAAAAT--A
106839 AAAATAAAATA
1 AAAATAAAATA
106850 AA
1 AA
106852 GGTAAAAAGG
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
9 3 0.05
10 9 0.14
11 23 0.35
12 11 0.17
13 20 0.30
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.15
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:106829 original size:26 final size:25
Alignment explanation
Indices: 106754--106851 Score: 103
Period size: 26 Copynumber: 3.8 Consensus size: 25
106744 TATTTTTATT
*
106754 TAAAGAAAATAAAATAATAAAACAAAA
1 TAAAGAAAAT-AAA-AATAAAATAAAA
106781 TAAAAGTGAAAATAAAAATAAAATAAAA
1 T-AAA--GAAAATAAAAATAAAATAAAA
106809 TAAAGAAAAGTAAAACA-AAAATAAAA
1 TAAAGAAAA-TAAAA-ATAAAATAAAA
106835 TAAA-AAAAT-AAAATAAA
1 TAAAGAAAATAAAAATAAA
106852 GGTAAAAAGG
Statistics
Matches: 64, Mismatches: 1, Indels: 16
0.79 0.01 0.20
Matches are distributed among these distances:
22 1 0.02
23 6 0.09
24 1 0.02
25 9 0.14
26 18 0.28
27 5 0.08
28 15 0.23
29 3 0.05
30 6 0.09
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (25 bp):
TAAAGAAAATAAAAATAAAATAAAA
Found at i:106829 original size:31 final size:30
Alignment explanation
Indices: 106764--106851 Score: 99
Period size: 31 Copynumber: 2.9 Consensus size: 30
106754 TAAAGAAAAT
* * *
106764 AAAATAATAA-AACAAAATAAAAGTGAAAATA
1 AAAATAA-AATAAAAAAAGAAAAGT-AAAACA
106795 AAAATAAAATAAAATAAAGAAAAGTAAAACA
1 AAAATAAAATAAAA-AAAGAAAAGTAAAACA
*
106826 AAAATAAAATAAAAAAATAAAA-TAAA
1 AAAATAAAATAAAAAAAGAAAAGTAAA
106852 GGTAAAAAGG
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
29 4 0.08
30 9 0.18
31 29 0.57
32 9 0.18
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (30 bp):
AAAATAAAATAAAAAAAGAAAAGTAAAACA
Found at i:106848 original size:18 final size:18
Alignment explanation
Indices: 106754--106851 Score: 78
Period size: 18 Copynumber: 5.2 Consensus size: 18
106744 TATTTTTATT
106754 TAAAGAAAATAAAATAATAA
1 TAAA-AAAATAAAATAA-AA
*
106774 -AACAAAATAAAAGTGAAAA
1 TAAAAAAATAAAA-T-AAAA
106793 T--AAAAATAAAATAAAA
1 TAAAAAAATAAAATAAAA
*
106809 TAAAGAAAAGTAAAACAAAAA
1 TAAA-AAAA-TAAAA-TAAAA
106830 TAAAATAAA-AAAATAAAA
1 TAAAA-AAATAAAATAAAA
106848 TAAA
1 TAAA
106852 GGTAAAAAGG
Statistics
Matches: 65, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
16 5 0.08
17 1 0.02
18 27 0.42
19 13 0.20
20 8 0.12
21 11 0.17
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (18 bp):
TAAAAAAATAAAATAAAA
Found at i:107846 original size:4 final size:4
Alignment explanation
Indices: 107839--107970 Score: 51
Period size: 4 Copynumber: 32.8 Consensus size: 4
107829 AAGGTAAAAA
* * * *
107839 AAAT AAAT AAAT AAAT -TAT AAAT ATAAT -AAT AAAT ATAT AACT ATAT
1 AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT
* * * *
107886 AAAT AAAAT ACATAT AAAT -ATT AACAA AAAT AAAT -AAT AAAG ATAT
1 AAAT -AAAT A-A-AT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT
* * * *
107932 ACAT ATAT TAAT ACAT AGTAAT -AAT AAAT AAAT -AAT AAA
1 AAAT AAAT AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAA
107971 ATGCCTAAAT
Statistics
Matches: 93, Mismatches: 22, Indels: 26
0.66 0.16 0.18
Matches are distributed among these distances:
3 16 0.17
4 61 0.66
5 11 0.12
6 5 0.05
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (4 bp):
AAAT
Found at i:107917 original size:43 final size:43
Alignment explanation
Indices: 107841--107966 Score: 105
Period size: 43 Copynumber: 2.9 Consensus size: 43
107831 GGTAAAAAAA
* *
107841 ATAAATAAATAAATTATAAATATAATAATAAATATATAACTAT
1 ATAAATAAATAAATTATAAATATAACAATAAATAAATAACTAT
* *
107884 ATAAATAAAATACA-TATAAATATTAACAA-AAATAAATAA-TAA
1 ATAAAT-AAATAAATTATAAATA-TAACAATAAATAAATAACTAT
* * * * * *
107926 AGATATACATATATTAATACATAGTAATAATAAATAAATAA
1 ATAAATAAATAAATT-ATAAATA-TAACAATAAATAAATAA
107967 TAAAATGCCT
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
41 5 0.07
42 7 0.10
43 34 0.51
44 21 0.31
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (43 bp):
ATAAATAAATAAATTATAAATATAACAATAAATAAATAACTAT
Found at i:108178 original size:1 final size:1
Alignment explanation
Indices: 108168--108215 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
108158 CAACTCAACA
* * * * *
108168 TTTTTATTTTTTTTTTGTTTTTTGTTTTTTTTTTGTTTTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
108216 ACCAAAGCTC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.02, C:0.00, G:0.08, T:0.90
Consensus pattern (1 bp):
T
Found at i:108195 original size:18 final size:18
Alignment explanation
Indices: 108168--108215 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
108158 CAACTCAACA
*
108168 TTTTTATTTTTTTTTTGT
1 TTTTTGTTTTTTTTTTGT
108186 TTTTTGTTTTTTTTTTGT
1 TTTTTGTTTTTTTTTTGT
108204 TTTTTGTTTTTT
1 TTTTTGTTTTTT
108216 ACCAAAGCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.02, C:0.00, G:0.08, T:0.90
Consensus pattern (18 bp):
TTTTTGTTTTTTTTTTGT
Found at i:108206 original size:25 final size:24
Alignment explanation
Indices: 108168--108215 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
108158 CAACTCAACA
108168 TTTTTATTTTTTTTTTGTTTTTTG
1 TTTTTATTTTTTTTTTGTTTTTTG
*
108192 TTTTTTTTTTGTTTTTTGTTTTTT
1 TTTTTATTTT-TTTTTTGTTTTTT
108216 ACCAAAGCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.02, C:0.00, G:0.08, T:0.90
Consensus pattern (24 bp):
TTTTTATTTTTTTTTTGTTTTTTG
Found at i:108483 original size:47 final size:42
Alignment explanation
Indices: 108222--108526 Score: 420
Period size: 42 Copynumber: 7.2 Consensus size: 42
108212 TTTTACCAAA
* *
108222 GCTCCTCTAAACAGAGGCTCAACGAC-TTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-ATAAATT
* *
108265 GCTCCTCTAAGCAGAGGCACCATGAC-TTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
* *
108306 ACTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
108347 GCTCCTCTAAACAGAGGCACCACGACTTTT-GAAGAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAA-AATAAATT
* *
108389 ACTCCTCTAAATAGAGGCACCACGACTTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
*
108431 GCTCCTCTAAACAAAGGCACCACGACTTTCCTTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGA-----CTTTTGGAAAATAAATT
*
108478 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
108520 GCTCCTC
1 GCTCCTC
108527 GACAAACATG
Statistics
Matches: 237, Mismatches: 17, Indels: 17
0.87 0.06 0.06
Matches are distributed among these distances:
41 72 0.30
42 95 0.40
43 29 0.12
47 41 0.17
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
Found at i:109563 original size:7 final size:8
Alignment explanation
Indices: 109552--109636 Score: 63
Period size: 8 Copynumber: 10.8 Consensus size: 8
109542 TCTTTTTTTT
109552 TTTTTTCA
1 TTTTTTCA
109560 TTTTTTCA
1 TTTTTTCA
109568 TTTTTTTCA
1 -TTTTTTCA
**
109577 TCATTT--
1 TTTTTTCA
109583 TTTTTTCA
1 TTTTTTCA
109591 TTTTTTTCA
1 -TTTTTTCA
109600 -TTTTT--
1 TTTTTTCA
**
109605 TTTCATCA
1 TTTTTTCA
109613 TTTTTTTTCA
1 --TTTTTTCA
109623 TTTTTTCA
1 TTTTTTCA
109631 TTTTTT
1 TTTTTT
109637 TCAAGCTTAG
Statistics
Matches: 60, Mismatches: 8, Indels: 18
0.70 0.09 0.21
Matches are distributed among these distances:
6 7 0.12
7 5 0.08
8 26 0.43
9 16 0.27
10 6 0.10
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTTCA
Found at i:109584 original size:32 final size:31
Alignment explanation
Indices: 109549--109639 Score: 157
Period size: 31 Copynumber: 2.9 Consensus size: 31
109539 ACTTCTTTTT
109549 TTTTTTTTTCATTTTTTCATTTTTTTCATCA
1 TTTTTTTTTCATTTTTTCATTTTTTTCATCA
109580 TTTTTTTTTCATTTTTTTCATTTTTTTTCATCA
1 TTTTTTTTTCA-TTTTTTCA-TTTTTTTCATCA
109613 -TTTTTTTTCATTTTTTCATTTTTTTCA
1 TTTTTTTTTCATTTTTTCATTTTTTTCA
109640 AGCTTAGTAT
Statistics
Matches: 58, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
30 9 0.16
31 19 0.33
32 18 0.31
33 12 0.21
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (31 bp):
TTTTTTTTTCATTTTTTCATTTTTTTCATCA
Found at i:109586 original size:23 final size:23
Alignment explanation
Indices: 109560--109639 Score: 93
Period size: 23 Copynumber: 3.7 Consensus size: 23
109550 TTTTTTTTCA
109560 TTTTTTCATTTTTTTCATCATTT
1 TTTTTTCATTTTTTTCATCATTT
109583 TTTTTTCATTTTTTTCAT--TTT
1 TTTTTTCATTTTTTTCATCATTT
*
109604 TTTTCATCATTTTTTT--TCA---
1 TTTT-TTCATTTTTTTCATCATTT
109623 TTTTTTCATTTTTTTCA
1 TTTTTTCATTTTTTTCA
109640 AGCTTAGTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
18 10 0.20
19 4 0.08
20 1 0.02
21 7 0.14
22 10 0.20
23 18 0.36
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTCATTTTTTTCATCATTT
Found at i:109613 original size:13 final size:13
Alignment explanation
Indices: 109568--109623 Score: 70
Period size: 13 Copynumber: 4.8 Consensus size: 13
109558 CATTTTTTCA
109568 TTTTTTTCATCAT
1 TTTTTTTCATCAT
109581 TTTTTTT--TCA-
1 TTTTTTTCATCAT
109591 -TTTTTT--TCAT
1 TTTTTTTCATCAT
109601 TTTTTTTCATCAT
1 TTTTTTTCATCAT
109614 TTTTTTTCAT
1 TTTTTTTCAT
109624 TTTTTCATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.23
11 9 0.23
13 21 0.54
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTTTTCATCAT
Found at i:120234 original size:59 final size:59
Alignment explanation
Indices: 120053--120452 Score: 495
Period size: 59 Copynumber: 6.7 Consensus size: 59
120043 TCTTGCACAG
* * * *
120053 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTT-GAAACTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTATTTTTA-A
* ** *
120111 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTGGAAACTTGGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTTTATTTTTAA
* * * ** *
120169 GAAAAATTGATACTTTCAACTTTTTCTCAAAAACCTTTTTTTCGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTATTTTTAA
* *
120228 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGGAAACTTTGATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTTTATTTTTAA
* * **
120288 GGAAGATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTT-GAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTTGGAAATTTTATTTTTAA
*
120347 GGAAAATTGATACTTTCAACTTTTCCCCAAATATATATATATTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCC-AA-A-A-ATAT-TTTTTTGGAAATTTTATTTTTAA
120411 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
120453 TATTTTATTT
Statistics
Matches: 296, Mismatches: 33, Indels: 25
0.84 0.09 0.07
Matches are distributed among these distances:
56 4 0.01
57 4 0.01
58 67 0.23
59 97 0.33
60 60 0.20
61 9 0.03
62 3 0.01
63 9 0.03
64 43 0.15
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.44
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTATTTTTAA
Found at i:120319 original size:119 final size:118
Alignment explanation
Indices: 120053--120452 Score: 542
Period size: 119 Copynumber: 3.4 Consensus size: 118
120043 TCTTGCACAG
* * * *
120053 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTCTTTTGAAACTTTA-ATTTAGAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAACATTTTTTTGAAATTTTATTTTTA-AGGAAA
* *
120116 ATTGATACTTTCAAC-TTTTCCTCAAAAATA--TTTTTGGAAACTTGGATTTTCAA
64 ATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTTTGGAAACTTTGATTTTTAA
* * *
120169 GAAAAATTGATACTTTCAACTTTTTCTCAAAAACCTTTTTTTCGAAATTTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACATTTTTTT-GAAATTTTATTTTTAAGGAAAA
120234 TTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGGAAACTTTGATTTTTAA
65 TTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGGAAACTTTGATTTTTAA
* *
120288 GGAAGATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTGAAATTTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CATTTTTTTGAAATTTTATTTTTAAGGAAAA
*
120353 TTGATACTTTCAACTTTTCCCCAAATATATATATATTTTTTGGAAACTTT-ATTTTTAA
65 TTGATACTTTCAACTTTTTCCC-AA-A-A-ATAT-TTTTTTGGAAACTTTGATTTTTAA
* *
120411 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACATTTTTTT
120453 TATTTTATTT
Statistics
Matches: 255, Mismatches: 17, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
116 35 0.14
117 38 0.15
118 10 0.04
119 94 0.37
120 11 0.04
121 1 0.00
122 8 0.03
123 43 0.17
124 15 0.06
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.44
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAACATTTTTTTGAAATTTTATTTTTAAGGAAAAT
TGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGGAAACTTTGATTTTTAA
Found at i:120475 original size:5 final size:5
Alignment explanation
Indices: 120467--120559 Score: 81
Period size: 5 Copynumber: 19.6 Consensus size: 5
120457 TTATTTAAAG
* * *
120467 AAAAT AAAAT --AGT AAAAC AAAAT AAAAT AAAAT AAAAT AAAGA- AAAGT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT
* * *
120515 AAAAC AAAA- ATAAT AAAAT AAAAT -AAA- AATAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
120560 GGTAAAAAGG
Statistics
Matches: 70, Mismatches: 11, Indels: 14
0.74 0.12 0.15
Matches are distributed among these distances:
3 2 0.03
4 8 0.11
5 59 0.84
6 1 0.01
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:120597 original size:4 final size:4
Alignment explanation
Indices: 120590--120629 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
120580 AACCTAATCT
*
120590 AATA AATA AA-A AATA AATA AATA AACA AAT- AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AA
120630 AAAAAACCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 6 0.19
4 26 0.81
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:120608 original size:15 final size:14
Alignment explanation
Indices: 120589--120632 Score: 70
Period size: 15 Copynumber: 3.0 Consensus size: 14
120579 AAACCTAATC
120589 TAATAAATAAAAAA
1 TAATAAATAAAAAA
120603 TAAATAAATAAACAAA
1 T-AATAAATAAA-AAA
120619 TAATAAATAAAAAA
1 TAATAAATAAAAAA
120633 AAACCTAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.14
15 20 0.71
16 4 0.14
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.20
Consensus pattern (14 bp):
TAATAAATAAAAAA
Found at i:120614 original size:19 final size:19
Alignment explanation
Indices: 120590--120629 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
120580 AACCTAATCT
*
120590 AATAAATAAAAAATAAATA
1 AATAAACAAAAAATAAATA
*
120609 AATAAACAAATAATAAATA
1 AATAAACAAAAAATAAATA
120628 AA
1 AA
120630 AAAAAACCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (19 bp):
AATAAACAAAAAATAAATA
Found at i:121618 original size:23 final size:24
Alignment explanation
Indices: 121565--121630 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 24
121555 CAAGATAAAA
* *
121565 AAATAATAAATAAATAAATTATAAT
1 AAATAATAAATATAT-AACTATAAT
121590 ATAATAATAAATATATAACTAT-AT
1 A-AATAATAAATATATAACTATAAT
* *
121614 AAATAAAAAACATATAA
1 AAATAATAAATATATAA
121631 ATATTAACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 14 0.39
24 3 0.08
25 6 0.17
26 13 0.36
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (24 bp):
AAATAATAAATATATAACTATAAT
Found at i:121630 original size:15 final size:16
Alignment explanation
Indices: 121596--121633 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
121586 TAATATAATA
* *
121596 ATAAATATATAACTAT
1 ATAAATAAAAAACTAT
121612 ATAAATAAAAAAC-AT
1 ATAAATAAAAAACTAT
121627 ATAAATA
1 ATAAATA
121634 TTAACAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (16 bp):
ATAAATAAAAAACTAT
Found at i:121743 original size:16 final size:16
Alignment explanation
Indices: 121701--121745 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 16
121691 TAAAATACCT
*
121701 AAAATACAAAAGAAAA
1 AAAATACAAAATAAAA
121717 AAAATA-AAAATAAAA
1 AAAATACAAAATAAAA
*
121732 ATAATACAAAATAA
1 AAAATACAAAATAA
121746 GAACCGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.13
Consensus pattern (16 bp):
AAAATACAAAATAAAA
Found at i:123742 original size:870 final size:868
Alignment explanation
Indices: 121814--124517 Score: 3221
Period size: 872 Copynumber: 3.1 Consensus size: 868
121804 TGGGTGTCTA
* * *
121814 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACGTTTTTCAAAATGGTCACAAAATCCTGCACAC
1 CAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTC-AAATGGTCACAAAATCCTGTACAC
* * *
121879 ATCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
64 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGT
* *
121944 TTGGGGCCAAAACGCCTT-TTGAAAAAATTTTAAAAAAATCTCGAACTGTAAAAAGTTTCAAAAA
128 TTGGGGCCAAAACTCCTTCTTGAAAAAA-TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
* * *
122008 TCGTGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACCATTT
192 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
122073 TATGAATTTACAAGCCATAAAAATGGCATTGGCCCAGCAGAAATATGAAGATGTGCCTAAACCCA
257 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
122138 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGACCTGCATAGTGCCCGTCCGC
322 CCTACCACCCTATCGATCCACGGCTTACGCATCCTGCCTCTCTG-CC-GCGTAGTGCCCGT----
* * * *
122203 CCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
381 CCGCTCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCG
* * * * *
122268 GACCGATGGTTGCGGCAGCAAGATCGGA-AGGATGCTGAGGGGGACACGGCCAATCCCCGGCTTG
446 GA-CGAGGGTTGCGGCAGCAGGATC-GATAGGACGCTGAGGGGGACCCGGCCGATCCCCGGCTTG
* * * * * * *
122332 CGCATCCTGCCCCTCTGGCCAGCTGAGCACCCATACGCTCATTTCATGGGTTGACTTAGGCATAC
509 CGCATCCTGCCCCTCTAGTCAGCTGAGCGCTCGTACGCTCGTTTCATGGATTGACTTAGGCATAC
122397 -AGAGTTTATTCCCATTCAAGCATATGGAGTTCATTCTAGTCTAAGATCGAACCAGACCGAGGGT
574 GA-AG----TT--CATT----C----------C---C-AGTCTAAGATCGAACCAGACCGAGGGT
* * * *
122461 TGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTTTTCACTCGGGGCACCAT
614 TGCGGGAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCAT
* * * * * *
122526 CGCCGGAGTATCGCCGGAGAACCTGACCGACGGTATTGGGGTTCCAACGATTAGGGGGGCCGGGG
679 CACCAGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCAACGATTAGGGGGGCCGGGG
*
122591 GGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
744 GGGTGTGCGCACATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
122656 ATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
809 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
122716 CAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCCTATACACT
1 CAGTAGCCATTAAAGTGTCTGAAATGGG-ACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
*
122781 TCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCATGTCTACCAAGTT
65 TCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAAAAAAATACAAGGATCATGTCTACCAAGTT
* * * *
122846 TGGGGCCAAAAATCCATCTT-AAAAAA-TTAAAAAAATCTCAAACCGTAAAAGGTTTCAAAAATC
129 TGGGGCCAAAACTCCTTCTTGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
* *
122909 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
194 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* *
122974 TGAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAAAAATATGAAGATGTGCCTAAACCCACC
259 TGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACC
*
123039 TACCACCCTATCGATCCACGGCTTACGCATCCTGACTCTCTAGCCGACGTAGTGCCCGTCCGCTC
324 TACCACCCTATCGATCCACGGCTTACGCATCCTGCCTCTCT-GCCG-CGTAGTGCCCGTCCGCTC
* * *
123104 ACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGATCGA
387 GCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGA-CGA
* * * * ** *
123169 GGGTTGCGGTAGCAGGATCGATAGCACGTTGAGGGGGACCCGACCGATCCTTGGCTTGCACATCC
451 GGGTTGCGGCAGCAGGATCGATAGGACGCTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC
* * * *
123234 TGCCCCTCTAGTCAGCTGGGCGCTCGTACGCTTGTTTCATGGTTTGACTTTGGCATACGAAGTTC
516 TGCCCCTCTAGTCAGCTGAGCGCTCGTACGCTCGTTTCATGGATTGACTTAGGCATACGAAGTTC
* *
123299 ATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGGAGCACATGCTGGGCTCGGGCATGTGC
581 ATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGGAGCACATGCTGGGCTCGGGCATGTGC
* * * *
123364 TGGTGCCATATTTTTTTTCACCCGGGGCACCATCACTAGAGCATCATCGGAGAACCTGACTGGCG
646 TGGTGCCATATTTTTTTTCACCCGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGACG
* ** * * *
123429 GCATTAGGGTTTCGGCGATTGGGGGGGTC-GGGGGGTGTGCGCACATGATATGCGATGGGTGCTG
711 GCATTAGGGTTCCAACGATTAGGGGGGCCGGGGGGGTGTGCGCACATGATATACGATGGGTGCTG
* *
123493 GTACTTGGCTCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
776 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
123558 AGCATTTGAGATTTTACAGGTTTGCTGC
841 AGCATTTGAGATTTTACAGGTTTGCTGC
*
123586 TAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
1 CAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
*
123651 TCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTT
65 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTT
* * *
123716 GGGGCCAAAACTCCTTCTTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC
130 GGGGCCAAAACTCCTTCTTGAAAAAA-TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
* *
123781 GTGAAAAATAGAAAACGAATCGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
194 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* * * *
123846 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATTTACCTAAACCCACC
259 TGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
123911 AACCACCCTATTGATCCACGGCTTACGCATCCTGCCTCTCTGGCTGGCGTAGTGCCTGCCCGCCT
324 TACCACCCTATCGATCCACGGCTTACGCATCCTGCCTCTCT-GC-CGCGTAGTGCCCGTCCG-CT
* * *
123976 GCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACTGGA
386 ---CGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGA
* * * * *
124041 CTGAGGGTTGCTGCAACAGGATC-AGTCGGACACTGAGGGGGACCCGGTCGATCCCCGGCTTGCG
448 C-GAGGGTTGCGGCAGCAGGATCGA-TAGGACGCTGAGGGGGACCCGGCCGATCCCCGGCTTGCG
* * * * *
124105 TATCCTGCCCCTCTAGTC-GGTCGAGCGCTTGCACGCTCGTTTCATGGATTAACTTAGGCATACG
511 CATCCTGCCCCTCTAGTCAGCT-GAGCGCTCGTACGCTCGTTTCATGGATTGACTTAGGCATACG
* * * ***
124169 GAGTTCATT-CCAGTCTAAGATTTGATTCATTCCCAGTCTAAATTAACCGGACAGGTTGC-TTTG
575 AAGTTCATTCCCAGTCTAAGA-TCGA---A---CCAG---------ACC-GA-GGGTTGCGGGAG
* * *
124232 CACATGCTAGGCT--GGCAT-TGCT-GTG-CATATTTTTTTTTA--C-GGGCACCATCGCC-GAA
622 CACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCACCAG-A
* * ** * *
124288 GCATCGTA-CTGAGAA--TGACCGATCGGTATT--GGTTCC-GTGAATT-TGGGGG-TGGGGGGG
686 GCATC--ACCGGAGAACCTGACCGA-CGGCATTAGGGTTCCAACG-ATTAGGGGGGCCGGGGGGG
* * ** *
124345 T-TG-GCACATGATGTGCGAT-GGTGCTTTTGACTT-GCCCTTATATTGGACCCCTAT-CCTCAT
747 TGTGCGCACATGATATACGATGGGTGCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
124405 C-AACCTCAAGAACTCACAACCCCTTGAAGAGCA-TTGAGATTTTACAGGTTTGCTGC
811 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
124461 CAGTAGCCATTAAAGTGTTTG-AATCGGACAC-TTTTTCAAATGGTCACAAAATCCTGT
1 CAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
124518 TACATCAATT
Statistics
Matches: 1588, Mismatches: 170, Indels: 118
0.85 0.09 0.06
Matches are distributed among these distances:
869 51 0.03
870 217 0.14
871 135 0.09
872 233 0.15
873 9 0.01
874 3 0.00
875 58 0.04
876 195 0.12
877 7 0.00
878 25 0.02
879 20 0.01
880 2 0.00
881 14 0.01
882 12 0.01
883 6 0.00
884 23 0.01
885 8 0.01
886 1 0.00
887 13 0.01
888 3 0.00
889 8 0.01
890 5 0.00
891 4 0.00
892 15 0.01
893 6 0.00
894 2 0.00
895 163 0.10
896 1 0.00
898 1 0.00
899 205 0.13
900 1 0.00
901 102 0.06
902 40 0.03
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (868 bp):
CAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTG
GGGCCAAAACTCCTTCTTGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTACGCATCCTGCCTCTCTGCCGCGTAGTGCCCGTCCGCTCGCTT
GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACGAGGGTT
GCGGCAGCAGGATCGATAGGACGCTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCC
CTCTAGTCAGCTGAGCGCTCGTACGCTCGTTTCATGGATTGACTTAGGCATACGAAGTTCATTCC
CAGTCTAAGATCGAACCAGACCGAGGGTTGCGGGAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCATATTTTTTTTCACCCGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGACGGCATT
AGGGTTCCAACGATTAGGGGGGCCGGGGGGGTGTGCGCACATGATATACGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGC
Found at i:124891 original size:26 final size:26
Alignment explanation
Indices: 124855--124907 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
124845 GTTGACTTAG
* *
124855 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
124881 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
124907 G
1 G
124908 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:125795 original size:26 final size:26
Alignment explanation
Indices: 125759--125811 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
125749 GTTCACTTAG
125759 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
125785 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
125811 G
1 G
125812 ATTGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:126400 original size:26 final size:26
Alignment explanation
Indices: 126350--126402 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
126340 GTTGACATAG
* *
126350 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTAATTCTCAATCTAA
126376 GCATACGGAGTTAATTAC-CAATCTAA
1 GCATACGGAGTTAATT-CTCAATCTAA
126402 G
1 G
126403 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCTCAATCTAA
Found at i:127292 original size:26 final size:26
Alignment explanation
Indices: 127256--127308 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
127246 GTTGACTTAG
127256 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
127282 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
127308 G
1 G
127309 ATCAGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:129645 original size:26 final size:26
Alignment explanation
Indices: 129609--129661 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
129599 GTTCACTTAG
129609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
129635 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
129661 G
1 G
129662 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:130862 original size:876 final size:866
Alignment explanation
Indices: 127752--136057 Score: 9584
Period size: 877 Copynumber: 9.5 Consensus size: 866
127742 CCAAGTTTGG
* * * ** **
127752 GGATCGATAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGGCCCTCCAGCCG
1 GGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCG
* * * * * *
127817 GCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTGGGCATATAGAGTTCATTTCCAGTCTAAT
65 GCTGAGCGCCCGCACGCTC-GTTCGTGGGTTGACTTAGGCATA-CGAGTTCATTCCCAGTCTAAG
* * * * * * * * * * ***
127882 ATCAGACCGGATCGAGGGTTACAGGTGCACATGCTGGCCTCGAGCATGTCCTAGTACCGCATTTT
128 ATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATTTTTT
* * * **
127947 TTTCACCCGGGCCACCATCGTCGGAGCATCACCGGAGAACCTGACTGGGGGCATTGGGGTTCCGG
193 TTTCGCTCGGGCCACCATCG-CGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGG
* * *
128012 AGATTGAGGGGGCCGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
257 TGATTGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
128077 TTGGCCCCCTATCCCTCATCAAACCTCGAGCACTCACAACCCCTTAAAGAGCATTTGAGATTTTA
321 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
128142 CAGGTTT-CATGCCAGTAGCCACTAAAATGTCTAAAATGGGGACAATTTTTTCAAATTGTCACAA
386 CAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
128206 AATCCTTTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
450 AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
128271 TGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATC-CTGAACCGTAAA
515 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC-GAACCGT-AA
* * * * *
128335 AAAGTTTGAAACAAAACATGAAAAATAGAAAATGAGTCGTCTTCACCATGAAACTTCGCATGAAG
578 AAAGTTT-CAA-AAATCATGAAAAATAGAAAACGAGTCGTCTT-GCCATGAAACTTCACATGAAG
** *
128400 GCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTGGCATGGTAG-AATATGAA
640 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG-A
** * * *
128464 AGATGTGCCTAAACCCACCTAACCAATTCT-TCGATCCATGGCTTGCGCATCCCACCTCTCTGGT
704 AGATGTGCCTAAACCCACCT-ACC-ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC
* * * * * * *
128528 CGGCGTCGTGCCCGCTCGACCGCCTGCTCTTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
767 CGACGTAGTGCCC-C-CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** * *
128593 CCATTCTAAGATTGGACCGGACTGAGGGTTATGATAACA
830 CCAGTCTAAGA-TCGACC-GACCGAGGGTTGCGGTAGCA
* * * *
128632 GGATC-AGCAGCACGAAGAGGGGGACCCGGCCGATCCCAGGCTTGCGCATCCTGCCCCTCTGGCC
1 GGATCGA-CAGCACGCAGAGGGGGA-CCGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCC
* * * *
128696 GGTTGAGCGCCCTCACGCTCATTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
64 GGCTGAGCGCCCGCACGCTC-GTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAA
* * * * * * *
128761 GATAGGACCAAACCAAGGGTTGCTGGTGCACATGCTGGCCTCGGGCATGTGGTGGTGCCACATTT
127 GATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA-TTTT
* * * * *
128826 ATTTTCGCTCAGGCCACCATCGTCGGAGCATCACCGGAGAACCTGCCCGACGGCATTGGGGTTCC
191 TTTTTCGCTCGGGCCACCATCG-CGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCC
*
128891 GATGATTTGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
255 GGTGA-TTGGGGGGGCC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
128956 TATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
317 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
129021 TTTACAGGTTTGCTACCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
382 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
129086 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAAGGA
447 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
129151 TCACGTCTAACAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGTA
512 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTA
* **
129216 AAACGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC-T----TG------C-CATGAAGGC
577 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
* * *
129269 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTGGCATTGACATGGCAGAAATATGGAGA
642 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGA
* * * * ** *
129334 TGTGCCTAAACCCGCCTACCACCCTATCGGTCCATGGGTTATGCATCCCGTCTCTCTGGCCGACG
707 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACG
* ** *
129399 TAGTGCCCTCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTTAGTTGGCTTTGGCATACGGAGTTCA
772 TAGTG-----CC-CCCGCCCG--C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * *
129464 TTCCCAGTCCAAGATCAGATCAGATCGAGGGTTGCGGTAGCA
827 TTCCCAGTCTAAGATC-GA-CCGACCGAGGGTTGCGGTAGCA
* * * * * *
129506 AGATTGGCAGCACGCTA-AGGGGGACCTGACCGATCCCTGACTTGTGCATCCTGCCCCTCTGGCC
1 GGATCGACAGCACGC-AGAGGGGGACC-GACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCC
* * *
129570 GACTGAGCGCCCGCACGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
64 GGCTGAGCGCCCGCACGCTC-GTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
* * * * *
129635 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTACACATGCTGGGCACGGGC
127 G-AT-C-G-G---A---CCAGAC--CGA--GGGTT-G--C--GGGTGCACATGCTGGGCTCGGGC
*
129700 ATGTGCTGGTGCCATTTTTTTTTTCGCTCGGGGCACCAT--C---G---CG--GGAGAACCTGAC
173 ATGTGCTGGTGCCA-TTTTTTTTTCGCTCGGGCCACCATCGCGGAGCATCGCCGGAGAACCTGAC
* * * * * * *
129755 CGACAGCATTAGGGTTCTGGCGATTGGGGGTG--GGGGGTGTGCGGACATGATGTGCGATGGGTG
237 TGACGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTG
** * *
129818 CTGGTACACGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTA
302 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
129883 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAGGTGTCTGAAATGGGGACACA
367 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
129948 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCA
432 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * **
130013 ACAAAAATAAAAGGATCGCGTCTAAAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
497 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* ** *
130078 AAATCCCGAACCGTAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAA
562 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
130143 ACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCAT-AAATTGGCATTGGGCAA
627 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GGC-A
* *
130207 TGGCAGAAATATGAAAGATGTGCCTAAACACCACCTAACAACCCTATCGATCCATGGC-TGCGCA
690 TGGCAGAAATATG-AAGATGTGCCTAAAC-CCACCT-ACCACCCTATCGATCCACGGCTTGCGCA
* *** * *
130271 TTCCGCCTCTCTTATCGGCAATAGTGCCCCCG-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
752 TCCCGCCTCTCTGGCCGAC-GTAGTGCCCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * * * *
130335 TACGGAGTTCATT-CTAGCCTAAGAATCGTTACTAGAACCGAGTGTTGTGGTAGTA
816 TACGGAGTTCATTCCCAGTCTAAG-ATCG--AC-CG-ACCGAGGGTTGCGGTAGCA
* ** * * *
130390 GGATTGGTAGCACGCAGAGGGGG-CCAATCGAT-CCTCGGCTTGCGCATCCTACCCCTCGGGCC-
1 GGATCGACAGCACGCAGAGGGGGACCGACCGATCCCT-GGCTTGCGCATCCTACCCCTCTGGCCG
* * * *
130452 GCTGAACGCACGAACGCGTCGTT-GT-GGTTGAGCTTTAGGCACTACAGAGTTCATT-CCTGTC-
65 GCTGAGCGCCCGCACGC-TCGTTCGTGGGTTGA-C-TTAGGCA-TAC-GAGTTCATTCCCAGTCT
130513 AAGATCGGAACCAGACCGAGGGTTGCGGGTGGCACATGCTGGGGCTCAGGGCATGTGCTGG-GCC
125 AAGATCGG-ACCAGACCGAGGGTTGCGGGT-GCACATGCT-GGGCTC-GGGCATGTGCTGGTGCC
* * *
130577 ACTTTTTTTTTCGCT-GGGCCACCATCGTCTGG-GCATCGCCAGAGAACCTAACTGGCGGCATTG
186 A-TTTTTTTTTCGCTCGGGCCACCATCG-C-GGAGCATCGCCGGAGAACCTGACTGACGGCATTG
* *
130640 GGGTTCCGGTGATTGGGGGGGCCGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGG
248 GGGTTCCGGTGATTGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
130705 CCTTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
313 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
130770 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATT
378 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
130835 GTCAAAAAATCCTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
443 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
130900 AGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTCAAATAATCTCGAAC
508 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAAC
* ** * *
130965 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATAAGTCGTGTTGGCATGAAACTTCACATGA
573 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
* *
131030 AGGCTTAAGGGACCATTGTATGAAATGACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG
638 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG
* *
131095 AAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCACATCCCGCCTCTCTGGCC
703 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC
* * * ** *
131160 GGCGTAGTGCCCGTCCGCCCACCCGCTC-TATTCGTCGGTTTTCTTGGGCATACGGAGTTCATTC
768 GACGTAGTGCCC--CCGCCCGCCCGCTCGT-TTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
131224 CCAGTCTAAGAACGGACCGGATCAAGGGTTACGATAACA
830 CCAGTCTAAGATC-GACC-GACCGAGGGTTGCGGTAGCA
* * *
131263 GGATCAACAGCATGCAGAGGGGGACCCGACCGATCCCAGGCTTGCGCATCCTACCCCTCTGGCCG
1 GGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCG
* * * *
131328 GTTGAGCGCCCGCACGCTTGTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGA
65 GCTGAGCGCCCGCACGCTCGTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGA
* * ** * * * *
131393 TAGGACCAGACCTAGGGTTATGGGTGCAAATGCTGGGCTCGGGCATGTGCT-GTACCGTATTTTT
129 TCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATTTTTTT
* ** * **
131457 TTCGCTCGGGCCACCATCGCTGGAGCATCACTAGAGAACCTGCCTGACGGCATTGGGGTTCCAAT
194 TTCGCTCGGGCCACCATCGC-GGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGGT
*
131522 GATTTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATA
258 GA-TTGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
131587 TTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
321 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
131652 CAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACAATTATTTCAAATGGTCACAAA
386 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
131717 ATCCTGTACACTTCGAGTTTTTAGCTGAAATTTTTT-TGCATGCCAAGAAAAATACAAGGATCGC
451 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
131781 GTCTACCAAGTTTAGGGCCAAAACTCCCTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAA
516 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAA
131846 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
581 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
* *
131911 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGACGTG
646 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * *
131976 CCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGTCGACGTAGT
711 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT
* * * * *
132041 GCCCGTCCACCCGGCCGCCGGCTCGTTTCATCGATTGGGTTAGGCATACGGAGTTCGTTCCTAGT
776 GCCC--CCGCCC-G-C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* *
132106 CTAAGATTGGACCGAACTGAGGGTTGCGGTAGCA
835 CTAAGA-TCGACCG-ACCGAGGGTTGCGGTAGCA
* * * * * ** *
132140 TGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCTGGCTTGTGTATCCTACCGTTCTAGCCG
1 GGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCG
* * * *
132205 GCTGAACGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
65 GCTGAGCGCCCGCACGCTC-GTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAG
* * * * * * * *
132270 ATCAGATCAGATCGAGTGTTGCGGGTGCACGTGCTAGGCTCGGGCATTTGTTGGTGCCATATTTT
128 ATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAT-TTTT
* * * * ** * * * *
132335 TTTTCACCCGGGGCACCATCGCCGGAGTATCATCGGATAACCTGACCGACGGTATTGGTGTTCCG
192 TTTTCGCTCGGGCCACCATCG-CGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCG
*
132400 GCGATTGGGGGGGCC----G-G-G-G-----G-T-T---A------CT--TA----GCCCTTATA
256 GTGATTGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
132436 TTAGCCCCCTATCCCTCATCAAATCTCGCGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTA
321 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
132501 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTGCAAGTGGTCACAAA
386 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * * *
132566 ATCTTATACACTTCGAGTTTTTAGTTGAAGTTTTTTATGCATGCCCACAAAAATACAAGGATCAC
451 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * *
132631 ATCTA-CTAGGTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATCTTGAACAGTAAAAA
516 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAA
*
132694 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
581 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
* * *
132759 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCAAGGCAGAAGTATGAAGATGTG
646 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * * ** * *
132824 CCCAAACCCACCTACCACCCAATCGATCCACAGCTTGCGCATCCCGCCTCTCTGGTTGGCATAGT
711 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT
* *
132889 GCCTGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
776 GCC--CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
132954 GATCAGACCAGACCGAGGGTTGCGGCAGTA
839 GATC-GACC-GACCGAGGGTTGCGGTAGCA
* * * * *
132984 GGATCGACAGCACGCTGAGGGGGATCCGATCGAT-CCTCGGCTTGCGTATCATACCCCTCGGGCC
1 GGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCT-GGCTTGCGCATCCTACCCCTCTGGCC
* * *
133048 GGCTGAACGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
64 GGCTGAGCGCCCGCACGCTCG-TTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
* * * * * *
133113 GATCAGATC-GAATCGAGGGTTGCGGGTGCACGTGCTGGGCTGGGGCATGTGCTAGTGCCGTATT
127 GATCGGACCAG-ACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC--ATT
* * * * *
133177 TTTTTTTCTCTCGGGGCACCTTCGCCAGAGCATCGTCGGAGAACCTGA-TCGACGGCATTGGGGT
189 TTTTTTTCGCTCGGGCCACCATCG-CGGAGCATCGCCGGAGAACCTGACT-GACGGCATTGGGGT
* * * *
133241 TCCAGTGATT-----GG--GGGGGTGTGCACACATGATGTACGATTGGTGCTGGTACTTGGCCCT
252 TCCGGTGATTGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
133299 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
317 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * * *
133364 TTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGAGGATACTTTTTTCAAATGGTTA
382 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
133429 CAAAATCCTGGACACTTCAAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGG
447 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
133494 ATGACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCTCGAGCCGT
511 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGT
* * * *
133559 AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCAAATAAAGG
576 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
*
133624 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAG
641 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
* ** * *
133689 ATGTGCCTAAACCCACCTACCACCCTATTGATCCACGAATTGCGCATCTCGTCTCTCTGGCCGAC
706 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGAC
* * ** * * * *
133754 GTAGTGCATTTCCTGCCTTCACGCTCGTTTCATCGGTTGGCTTCGGCATATGGAGTTCATTCCTA
771 GTAGTGC---CCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * *
133819 GTCTAAGATTAGACCGGACCAAGGGTTACGGTAGCA
833 GTCTAAGA-TCGACC-GACCGAGGGTTGCGGTAGCA
* * * ** * * **
133855 GGATCGACAGCACGCTA-AGAGGGACCCGATCGATCCCCGGCTTATGCATCCTGCCCCTTTGGAT
1 GGATCGACAGCACGC-AGAGGGGGA-CCGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCC
*
133919 GGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
64 GGCTGAGCGCCCGCACGCTCG-TTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
* * * * **
133983 GATAGGATCGGACCAAGGGTTGCGGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCA-TT
127 GATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-CATTT
* * ** *
134047 TTCTTTCGCTCGAGG-CACCATCGCCGGAGCATCGTCGGAGAACCAAACTGGCGGCATTGGGGTT
190 TTTTTTCGCTCG-GGCCACCATCG-CGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTT
* *
134111 CCGGTGATTGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACC
253 CCGGTGATTGGGGGGG-C-CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
134176 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTCAGA
316 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
134240 TTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGTC
381 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * * * *
134305 ACAAAATCCTATACACTTTGAGTTTTTAGCTGAACTCTTTTGTGCATGCCCACAAAAATAGAAGG
446 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
134370 ATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAACATTTAAAAAAAATCCTCGAACCG
511 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT-CTCGAACCG
*
134435 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACATGAAG
575 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
* * *
134500 GCTTATGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCACGGCATAAATATGAA
640 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAA
* * *
134564 GATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTACGCATCTCGCCTCTCTGGCCGA
705 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA
** *
134629 CGTAGTGCCCGCCTGCCCGCCCGCTCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATT
770 CGTAGTGCCC-CC-GCCCG--C-C-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
134694 CCCTGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCA
829 CCCAGTCTAAGATC-GACCG-ACCGAGGGTTGCGGTAGCA
* * * *
134734 GGATCGACAGCACGCTA-AGGGGGACTCGATCGATCCCTGACTTGCGTATCCTGCCCCTCTGGCC
1 GGATCGACAGCACGC-AGAGGGGGAC-CGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCC
* *
134798 GGCTGAGCGTCCGCATGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
64 GGCTGAGCGCCCGCACGCTCGTT-CGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAA
* * * * * *
134863 GATCGGACCGGACCAAGGATTGTGGGTGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCATAATT
127 GATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAT-TTT
* * * * **
134928 TTTTTCAC-CTGGGGCACCATCTTTC-GAGCATCGTCGGAGAACCTGA-TCGGTGGCATTGGGGT
191 TTTTTCGCTC-GGGCCACCATC--GCGGAGCATCGCCGGAGAACCTGACT-GACGGCATTGGGGT
** ** * * * * *
134990 TCCGACGATTTAGGGGG-CGAGGGGTGTACGCAGATGATGTACGATGGGTACTGGAACTTGGCCC
252 TCCGGTGATTGGGGGGGCCG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
135054 TTATATTGGCCCCCTATCCCTTATCAAGCCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGA
316 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
135118 TTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTC
381 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * * * *
135183 ACAAAATCCTATGCACTTCCAGTTTTTAGCTAAATTTTTTTGTGAATGCCAAAAAAAATACAAGG
446 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
** * * * *
135248 ATCACGTCTAAAAAGTTTGGGGCGAAAACTCCTTCTGAAAAAATTTAAAAAAAATCTGGAATCGT
511 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGT
*
135313 AAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
576 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
135378 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
641 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
* * * *
135443 TTGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCACCTTTCTGGCCGAC
706 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGAC
** *
135508 GTAGTGCCCGCCCGCCCATCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
771 GTAGTG-CC-CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* *
135573 TCTAAGATCAGACCGGATCGAGGGTTAC-G-A-CA
834 TCTAAGATC-GACC-GACCGAGGGTTGCGGTAGCA
* * * * * * *
135605 -GA---AC-G--C-TA-AGGGGGACTCGACCAATCCCCGACTTACGCATCCTACCTCTCTGGCCA
1 GGATCGACAGCACGCAGAGGGGGAC-CGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCG
* * *
135661 GCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
65 GCTGAGCGCCCGCACGCTC-GTTCGTGGGTTGACTTAGGCATA-CGAGTTCATTCCCAGTCTAAG
** * ** *
135726 ATCGGACTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTTTCGTATTTT
128 ATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAT-TTTT
* * * * *
135791 TTTTCGCCCGAGCAACCATCGCCGGAGCGTCGCCAGAGAACCTGA-TCGACGGCATTGGGGTTCC
192 TTTTCGCTCGGGCCACCATCG-CGGAGCATCGCCGGAGAACCTGACT-GACGGCATTGGGGTTCC
** ** * * * * *
135855 GAAGATTGGGGGGTTCGGGGTGGGGTGTGGGCACATGATGTGTGATGGGTTCTAGTACTTGGCAC
255 GGTGATTGGGGGG---GCCG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
135920 TTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
316 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
135985 TTTTACAGGTTTGTTGCCAGTAGCCATTAACGTGTCTGAAATGGGGACACTTTTTTCAAATGGCC
381 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
136050 ACAAAATC
446 ACAAAATC
136058 GTGAAAAATA
Statistics
Matches: 6406, Mismatches: 798, Indels: 457
0.84 0.10 0.06
Matches are distributed among these distances:
840 2 0.00
842 1 0.00
843 6 0.00
844 225 0.04
845 66 0.01
846 3 0.00
847 1 0.00
848 207 0.03
849 190 0.03
850 31 0.00
851 1 0.00
852 1 0.00
853 2 0.00
855 3 0.00
861 4 0.00
862 216 0.03
863 23 0.00
864 25 0.00
865 18 0.00
866 118 0.02
867 322 0.05
868 43 0.01
869 99 0.02
870 287 0.04
871 176 0.03
872 97 0.02
873 356 0.06
874 519 0.08
875 130 0.02
876 596 0.09
877 750 0.12
878 554 0.09
879 174 0.03
880 391 0.06
881 112 0.02
882 129 0.02
883 291 0.05
884 41 0.01
886 4 0.00
887 5 0.00
888 17 0.00
889 43 0.01
890 15 0.00
891 15 0.00
892 22 0.00
893 75 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (866 bp):
GGATCGACAGCACGCAGAGGGGGACCGACCGATCCCTGGCTTGCGCATCCTACCCCTCTGGCCGG
CTGAGCGCCCGCACGCTCGTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATC
GGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATTTTTTTTT
CGCTCGGGCCACCATCGCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGGTGAT
TGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCC
CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAC
CGACCGAGGGTTGCGGTAGCA
Found at i:135470 original size:878 final size:874
Alignment explanation
Indices: 132421--136057 Score: 4772
Period size: 878 Copynumber: 4.2 Consensus size: 874
132411 GGCCGGGGGT
* * * *
132421 TACTTAGCCCTTATATTAGCCCCCTATCCCTCATCAAATCTCGCGAACTCACACCCCTTTAAAGA
1 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGA
* *
132486 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTT
65 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * * * *
132551 GCAAGTGGTCACAAAATCTTATACACTTCGAGTTTTTAGTTGAAGTTTTTTATGCATGCCCACAA
130 TCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
* * *
132616 AAATACAAGGATCACATCT-ACTAGGTTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAAT
195 AAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAAT
* * *
132679 CTTGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
260 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
132744 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCAAGGCAG
325 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* * * *
132809 AAGTATGAAGATGTGCCCAAACCCACCTACCACCCAATCGATCCACAGCTTGCGCATCCCGCCTC
390 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
** * * * * *
132874 TCTGGTTGGCATAGTG-CCTGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAG
455 TCTGGCCGACGTAGTGCCCTGCCCGCCC-CTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* *
132938 TTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCTGA
519 TTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTAA
* * * * * * * * *
133002 GGGGGA-TCCGATCGATCCTCGGCTTGCGTATCATACCCCTCGGGCCGGCTGAACGCCTGCACAC
583 GGGGGACT-CGATCGATCCCCGACTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * *
133066 TCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGATCGAATCGAG
647 TCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAG
* * * * *
133130 GGTTGCGGGTGCACGTGCTGGGCTGGGGCATGTGCTAGTGCCGTATTTTTTTTTCTCTCGGGGCA
711 GGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTA-ATTTTTTTCCCTCGGGGCA
* *
133195 CCTTCGCCAGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCC-AGTGATT-----G--
775 CCATCGCCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGA-TGATTGGGGGGTC
* *
133252 GGGGGGTGTGCACACATGATGTACGATTGGTGCTGG
839 GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGG
*
133288 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
1 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGA
* * * *
133353 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGAGGATACTTTTT
65 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* ** * *
133418 TCAAATGGTTACAAAATCCTGGACACTTCAAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACA
130 TCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCT-AAATTTTTTTGTGCATGCCAACA
* * * **
133483 AAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAA
194 AAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAA
* * *
133548 TCTCGAGCCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACT
259 TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
133613 TCAAATAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
324 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* * ** * *
133678 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGAATTGCGCATCTCGTCT
389 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
** * * * * * *
133743 CTCTGGCCGACGTAGTGCATTTCCTGCCTTCACGCTCGTTTCATCGGTTGGCTTCGGCATATGGA
454 CTCTGGCCGACGTAGTGCCCTGCCCGCC-CCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * * * *
133808 GTTCATTCCTAGTCTAAGATTAGACCGGACCAAGGGTTACGGTAGCAGGATCGACAGCACGCTAA
518 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTAA
* * * * * * **
133873 GAGGGACCCGATCGATCCCCGGCTTATGCATCCTGCCCCTTTGGATGGCTGAGCGCCCGCACGCT
583 GGGGGACTCGATCGATCCCCGACTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
133938 CGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATAGGATCGGACCAAGGG
648 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGG
** * * *
134002 TTGCGGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCG-CATTTTCTTTCGCTCGAGGCACC
713 TTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTT-TTTCCCTCGGGGCACC
* * * *
134066 ATCGCCGGAGCATCGTCGGAGAACC-AAACTGGCGGCATTGGGGTTCCGGTGATTGGGGGGGTCG
777 ATCGCCGGAGCATCGTCGGAGAACCTGATC-GACGGCATTGGGGTTCCGATGATT-GGGGGGTC-
*
134130 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
839 GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGG
*
134166 TACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAG
1 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAG
* * *
134231 CATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * *
134296 CAAATGGTCACAAAATCCTATACACTTTGAGTTTTTAGCTGAACTCTTTTGTGCATGCCCACAAA
131 CAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAA
* * *
134361 AATAGAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAACATTTAAAAAAAATC
196 AATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAAT-
*
134426 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTT
260 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
134491 CACATGAAGGCTTATGGGACCATTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAT
325 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* * *
134555 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTACGCATCTCGCCTC
390 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
** *
134620 TCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGCTCGTTTTGTCAGTTGGCTTAGGCATACG
455 TCTGGCCGACGTAGTG--C-CCTGCCCGCCC-CTCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * *
134685 GAGTTCATTCCCTGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCT
516 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCT
* * * * * *
134750 AAGGGGGACTCGATCGATCCCTGACTTGCGTATCCTGCCCCTCTGGCCGGCTGAGCGTCCGCATG
581 AAGGGGGACTCGATCGATCCCCGACTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACG
*
134815 CTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAG
646 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAG
* * * *
134880 GATTGTGGGTGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCATAATTTTTTTCACCT-GGGGCA
711 GGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTTTTC-CCTCGGGGCA
** ** * *
134944 CCATCTTTC-GAGCATCGTCGGAGAACCTGATCGGTGGCATTGGGGTTCCGACGATTTAGGGGG-
775 CCATC-GCCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGA-TTGGGGGGT
* * * *
135007 CGAGGGGTGTACGCAGATGATGTACGATGGGTACTGG
838 CGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGG
* * *
135044 AACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAGCCTCGAGAACTCACACCCCTTAAAGAG
1 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAG
* * *
135109 CATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
135174 CAAATGGTCACAAAATCCTATGCACTTCCAGTTTTTAGCTAAATTTTTTTGTGAATGCCAAAAAA
131 CAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAA
* * *
135239 AATACAAGGATCACGTCTAAAAAGTTTGGGGCGAAAACTCCTTCTGAAAAAATTTAAAAAAAATC
196 AATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATC
* * *
135304 TGGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTC
261 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
135369 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
326 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* * * *
135434 AATATGAAGTTGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCACCTTT
391 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
* *
135499 CTGGCCGACGTAGTGCCC-GCCCGCCCATCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGT
456 CTGGCCGACGTAGTGCCCTGCCCGCCCCT-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * *
135563 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT-----------A-CGACAGAACGCTAAGG
520 TCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTAAGG
* * * * * *
135616 GGGACTCGACCAATCCCCGACTTACGCATCCTACCTCTCTGGCCAGCTAAGCGCCCGCACGCTCA
585 GGGACTCGATCGATCCCCGACTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * *
135681 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT
650 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTT
* ** * *
135746 GTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTTTCGTATTTTTTTTCGCC-C-GAGCAACCA
715 GCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTTTTC-CCTCGGGGC-ACCA
* * * *
135809 TCGCCGGAGCGTCGCCAGAGAACCTGATCGACGGCATTGGGGTTCCGAAGATTGGGGGGTTCGGG
778 TCGCCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATTGGGGGG-TC--G
* ** * *
135874 GTGGGGTGTGGGCACATGATGTGTGATGGGTTCTAG
840 G-GGGGTGTGCGCACATGATGTACGATGGGTGCTGG
* *
135910 TACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAGA
1 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGA
* *
135975 GCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAACGTGTCTGAAATGGGGACACTTTTT
65 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
136040 TCAAATGGCCACAAAATC
130 TCAAATGGTCACAAAATC
136058 GTGAAAAATA
Statistics
Matches: 2419, Mismatches: 308, Indels: 86
0.86 0.11 0.03
Matches are distributed among these distances:
861 11 0.00
862 219 0.09
863 2 0.00
865 1 0.00
866 75 0.03
867 237 0.10
868 46 0.02
869 91 0.04
870 279 0.12
871 151 0.06
873 1 0.00
874 71 0.03
875 3 0.00
876 190 0.08
877 275 0.11
878 460 0.19
879 152 0.06
880 143 0.06
881 12 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (874 bp):
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACATCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATC
TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
CTGGCCGACGTAGTGCCCTGCCCGCCCCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTAAGGG
GGACTCGATCGATCCCCGACTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTG
CGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTTTTCCCTCGGGGCACCATCG
CCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATTGGGGGGTCGGGGGGT
GTGCGCACATGATGTACGATGGGTGCTGG
Found at i:136751 original size:723 final size:720
Alignment explanation
Indices: 135324--136780 Score: 2026
Period size: 723 Copynumber: 2.0 Consensus size: 720
135314 AAAAGTTTCA
* *
135324 AAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACC
* ** *
135389 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGTTGTGCCTAAA
66 ATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACCGCAGAAATATGAAGATGTGCCTAAA
* *
135454 CCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCACCTTTCTGGCCGACGTAGTGCCCGC
131 CCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCACCTTTCTGGCCGACGTAGTGCCCGC
135519 CCGCCCATCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
196 CCGCCCATCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * *
135584 ACCGGATCGAGGGTTACGACAGAACGCTAAGGGGGACTCGACCAATCCCCGACTTACGCATCCTA
261 ACCAGACCGAGGGTTACGACAGAACACTAAGGGGGACTCGACCAATCCCCGACTTACGCATCCTA
* * *
135649 CCTCTCTGGCCAGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
326 CCCCTCTGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTCAT
* **
135714 TCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTG
391 TCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTG
** *
135779 GTTTCGTATTTTTTTTCGCCCGAGCAACCATCGCCGGAGCGTCGCCAGAGAACCTGATCGACGGC
456 GTGCCATATTTTTTTTCGCCCGAGCAACCAT--CC-GAGCG-CG-C-GAGAACCTGATCGACGGC
* * * ** * *
135844 ATTGGGGTTCCGAAGATTGGGGGGTTCGGGGTGGGGTGTGGGCACATGATGTGTGATGGGTTCTA
515 ATTGGGGTTCAGAAGATTGGGGGG-T-GCGGTGGGGTGTGCGCACATGATGTACGATAGGTGCTA
*
135909 GTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAG
578 GTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
135974 AGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAACGTGTCTGAAATGGGGACACTTTT
643 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTGAAATGGGGACACTTTT
136039 TTCAAATGGCCAC
708 TTCAAATGGCCAC
* *
136052 AAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACC
*
136117 ATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACCGTAGAAATATGAAGATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACCGCAGAAATATGAAGATGTGCCTAAA
* *
136182 CCC-CCTACCACACTATTGATCCACGGCTTGCGCATCCCGCCTTTCTGGCC-AGCGTAGTGCCCG
131 CCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCACCTTTCTGGCCGA-CGTAGTGCCCG
** * * * * * *
136245 CCCGCCTGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTGCCAGTCTAAGATTA
195 CCCGCCCATCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * ** * *
136310 GATCAGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACACTGAGGGGGAC-CTGGTCGATCCTCG
260 GACCAGACCGAGGG-T----TA-C--GA----CAGAACACTAAGGGGGACTC-GACCAATCCCCG
* * * * * *
136374 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
312 ACTTACGCATCCTACCCCTCTGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGG
136439 CATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGGTGCACATGCTGGGC
377 CATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGGTGCACATGCTGGGC
* *
136504 TCGAGG-ATGTGCTGGTGCCATA-TTTTTTTCGCCCGGGCCACCAT-C-A-C-CG-GAGAACCTG
442 TCG-GGCATGTGCTGGTGCCATATTTTTTTTCGCCCGAGCAACCATCCGAGCGCGCGAGAACCTG
*
136562 ATCGACGGCATTGGGGTTTCAG-CGATTGGGGGG-GCGG-GGGGTGTGCGCACATGATGTACGAT
506 ATCGACGGCATTGGGG-TTCAGAAGATTGGGGGGTGCGGTGGGGTGTGCGCACATGATGTACGAT
* *
136624 AGGTGCTGGTACTTGGC-CTTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
570 AGGTGCTAGTACTTGGCAC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
136688 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATA-GTGTCTGAAATGG
634 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA-ACGTGTCTGAAATGG
*
136752 GGACACTTTTTTCAAATGGTCAC
698 GGACACTTTTTTCAAATGGCCAC
136775 AAAATC
1 AAAATC
136781 CTGTACACTT
Statistics
Matches: 650, Mismatches: 61, Indels: 41
0.86 0.08 0.05
Matches are distributed among these distances:
722 1 0.00
723 168 0.26
724 4 0.01
726 1 0.00
727 157 0.24
728 129 0.20
730 2 0.00
732 3 0.00
733 2 0.00
735 3 0.00
738 21 0.03
739 157 0.24
740 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.25
Consensus pattern (720 bp):
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACCGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCACCTTTCTGGCCGACGTAGTGCCCGC
CCGCCCATCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCGAGGGTTACGACAGAACACTAAGGGGGACTCGACCAATCCCCGACTTACGCATCCTA
CCCCTCTGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTCAT
TCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCATATTTTTTTTCGCCCGAGCAACCATCCGAGCGCGCGAGAACCTGATCGACGGCATTGGG
GTTCAGAAGATTGGGGGGTGCGGTGGGGTGTGCGCACATGATGTACGATAGGTGCTAGTACTTGG
CACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTGAAATGGGGACACTTTTTTCAAATG
GCCAC
Found at i:137728 original size:871 final size:871
Alignment explanation
Indices: 136052--141070 Score: 6241
Period size: 871 Copynumber: 5.7 Consensus size: 871
136042 AAATGGCCAC
* * *
136052 AAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* ** *
136117 ATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACCGTAGAAATATGAAGATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* * * *
136182 CCC-CCTACCACACTATTGATCCACGGCTTGCGCATCCCGCCTTTCTGGCCAGCGTAGTGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
* * *
136246 CCGCCTGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTGCCAGTCTAAGATTAG
196 CCGCC---C-GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAG
* * * *
136311 ATCAGACC-GAGGGTTGCAGTAGCAGGATCGGCAGCACA-CTGAGGGGGACCTGG-TCGATCCTC
257 ATCAAACCTGAGGGTTGCGGCAGCAGGATCGGCAGCACATCTGAGGGGGACC-GGATCGATCCCC
*
136373 GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
321 GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
136438 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGGTGCACATGCTGGG
386 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
*
136503 CTCGAGG-ATGTGCTGGTG-C-CATATTTTTTTCGCCCGGGCCACCAT---C--A-C--CG---G
451 CTC-AGGCATGTGCTGGTGCCGCAT-TTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCAG
*
136554 AGAACCTGA-TCGACGGCATTGGGGTTTC-AGCGATTGGGGGGGCGGGGGGTGTGCGCACATGAT
514 AGAACCTGACT-GACGGCATTGGGGTTCCGA-CGATTGGGGGGGC-GGGGGTGTGCG-ACATGAT
* * * *
136617 GTACGATAGGTGCTGGTACTTGGCCTTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
575 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
136682 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGA
640 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
136747 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTGTTTAGCTGAATTTTT
705 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
136812 TTATGCATGCCAA-AGAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
770 TTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* *
136876 GAAAATTTTTAAAAAATCTCGAACCCGTAAAAAGTTTCA
834 AAAAATTTTAAAAAAATCTCGAA-CCGTAAAAAGTTTCA
136915 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* * *
136980 ATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGGCAGAAATAGGAATATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* *
137045 CCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGCCTCTC-GGCTGGCGTAGTGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
* * * * * *
137109 CCACCCGCTCGTTTCGTCAGTTGGCTTTGGCATACAGAGTTCACTCCCAGTCTAAGATCAGATCG
196 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGATCA
* * *** * * *
137174 GATC-GAGGGTTGCAATAGTAGGATCGACAGGA-ATCTGAGGGGGACCGGATCGATCCCCGGCTT
261 AACCTGAGGGTTGCGGCAGCAGGATCGGCAGCACATCTGAGGGGGACCGGATCGATCCCCGGCTT
* * *
137237 GCGCATCCTGCCCCTCTGGCCGGCTAAGCGTCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
326 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
137302 CGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAG
391 CAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAG
* * * *
137367 GCATGTGCTGGTGCTGTATTTTTTTTCACCCGGGGCACCATCGCCGGAGCATCGTCAGAGAACTT
456 GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCT
* * * ** *
137432 GGA-TGGCAGCAGTACGGTTCCCGACGATTGGGGGGGCAGGGGTGTGCAGACATGATGTGCGATG
521 -GACTGACGGCATTGGGGTT-CCGACGATTGGGGGGGCGGGGGTGTGC-GACATGATGTGCGATG
* * * *
137496 GGTGCTGGTACTTGGCCCTTACATTGGCTCCCTATCCCTCATCAAACCTGGAGAACTCACACCCG
583 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
137561 CTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGA
648 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
137626 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
713 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
137691 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCAAAATTCCTTCTGCAAAAAATTT
778 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTT
137756 TAAAAAAATCTCGAACCGTAAAAAGTTTCA
842 TAAAAAAATCTCGAACCGTAAAAAGTTTCA
* * *
137786 AAAATCGTGAAAAATAGAACACGAGTCATCTTGCCATGAAACTTCACTTGGAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* * **
137851 ATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGATAGAAATATGAAGATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* * * * * ** *
137916 CCTACCTGCCACCCTATCGATCCACGACCTGCGCATCCCGCCTTTCTGATCGGCTTAGTGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
* * * * * *
137981 CCGCCCGCTCGTTTCATCGGTTGTCTTAGGCATACAAAGTTAATTCCCAGTCTGAGATTGGATC-
196 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGATCA
* ** * * * *
138045 AAGCTGAGGGTTATGGCAGCAAGATTGGCAGCACGT-TGAGGGGGACCCGATCGATCCCCGGCTT
261 AACCTGAGGGTTGCGGCAGCAGGATCGGCAGCACATCTGAGGGGGACCGGATCGATCCCCGGCTT
* * * *
138109 GTGCATCCTGCCCCTCTGGCCGGCTGAGCGCTCGCATGCTCGTTTCGTGGACTTAGGCATACGGA
326 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-G-----GG--T--TGA
* ** *
138174 GTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTG
381 ---C-TT---AG-----GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* ** * *
138239 AGGGTGCACATGCTGGGCTCAGGCATGTGCTACTGCCACATTTTTTTTTGCCCGGGGCACCATCG
434 CGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCG
* * * **
138304 CCAGAGCCTCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGGTGATTGATGGGCCCGGG-GG
499 CCGGAGCATCGTCAGAGAACCTGACTGACGGCATTGGGGTTCCGACGATTG--GGG---GGGCGG
* * *
138368 GGTTGTGCACACATGATGTGCGATGGGTG-TGGGTGCTTGGCCCTTATATTGGCCCCCTATCCCT
559 GGGTGTGC-GACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
138432 CATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGT
622 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
138497 AGCCATTAAAGTGTCTGAAATGGGGAGACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAA
687 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
* * * *
138562 GTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAATACACGAATCACGTCTACCAAGTTTGGG
752 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** **
138627 GCCAAAACTCCTTCT-AAAAAAAATTAAAAAAATCTCGAACCGTAAAAAGTTTTG
817 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCA
** * *
138681 AAAATTATGAAGAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
138746 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* * * *
138811 CCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGCCTTTCTGGCTGGCGTAGTGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
* * *
138876 CCGCCCGTGCACTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGTTTGG
196 CCGCCC--G--CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAG
* * * * * *
138941 ATCAGA-CTGAGGGTTGCTGCAGCAGGATTGACAGCAC-GCTGAGGGGGACC-CAGTCGATCCCC
257 ATCAAACCTGAGGGTTGCGGCAGCAGGATCGGCAGCACATCTGAGGGGGACCGGA-TCGATCCCC
* * * * *
139003 AGCTTGCGCATCCTGCCCTTCTGGCTGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAG
321 GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
139068 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGAGTGCACATGCTGGG
386 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
139133 CTC-GAGCTTGTGCTGGTGCAGCATTTTTTTTCGCCCAGGGCACCATCGCCGGAGCATCGTCAGA
451 CTCAG-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCAGA
*
139197 GAACCTGACCAGA-GGCATTGGGGTTCCGACGATTAGGGGGGGCCGGGGGGTGTGC-AC---A--
515 GAACCTGA-CTGACGGCATTGGGGTTCCGACGATT-GGGGGGG-C-GGGGGTGTGCGACATGATG
* *
139255 --C-AT--GTGCTGCTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
576 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
139315 ACACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCAGCCAGTAGCCATTAAAGTGTCT-AG
641 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-
**
139379 AATGAAGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTT
705 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
139443 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
770 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
*
139508 AAAATTTTAAAAAAAATCTCGAACCGTAAAAAGTTTTA
835 AAAATTTT-AAAAAAATCTCGAACCGTAAAAAGTTTCA
* *
139546 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* *
139611 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATTTGAAGATGTGCCAAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
** * *
139676 CCCACCTAGTACCCTATCGGTCCACGGCTTGCGTATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT----GC
* * * *
139741 CCGCCCGCCCGCTCATTTCGTCGGTTGGCATAGGCATACAGAGTTCACTCCCAGTCTAAGATCAG
192 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAG
* * * * * *
139806 ACCAAA-CTGAGGGTTGTGGCAGTAGGATCGGTAGCACGT-TGAGGGGGACCCGGCT-GATCCCC
257 ATCAAACCTGAGGGTTGCGGCAGCAGGATCGGCAGCACATCTGAGGGGGA-CCGGATCGATCCCC
* * * * * * *
139868 AGCTTGTGCATCCTGCCCCTTTTGCCGACTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTTG
321 GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** *
139933 GCATATGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
386 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
139998 CTC-GAGAATGTGCTGGTACCGCATTTTTTTTCG-CCGAGGCACCATCGCCGTAGCATCGTCGGA
451 CTCAG-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCAGA
* * * * * *
140061 GAACCTGACTGATGGCATTGGGGTTCCAATGATTAGGGGGCCGGGGGGTGTGCGCACAAGATGTG
515 GAACCTGACTGACGGCATTGGGGTTCCGACGATTGGGGGGGC-GGGGGTGTGCG-ACATGATGTG
* * *
140126 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTTGAGAACTCAC
578 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
140191 ACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
643 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
140256 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTATGCTTCGAGTTTTTAGCTGAATTTTTTTG
708 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
140321 TTCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
773 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
140386 ATTTTAAAAAAATCTCCAACCGTAAAAAGTTTCA
838 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCA
* * * *
140420 AAAATCATGAAAAATA-AAAAAGAGTCGTCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* *
140484 ATTTTATGAATTCT-CAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAA
66 ATTGTATGAATT-TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAA
* * *
140548 ACCCACCTACCACACTATTGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCTCG
130 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA--G-T-G
* * * * * *
140613 CCCGCCCACCCGTTTGTTTCGTCGGTTGGCTTAGGGATACTGAGTTCATTCCCAGTCTATGATTA
191 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTA
* ** * * * * ** * *
140678 GATCGAACC-GATTGTTACGACAGCAAGATCGGCAGCAC-GCTGAGGGGGACCCAACCGATCCTC
256 GATCAAACCTGAGGGTTGCGGCAGCAGGATCGGCAGCACATCTGAGGGGGACCGGATCGATCCCC
* ** * * *
140741 GACTTATGCATTCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAG
321 GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
140806 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
386 GCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C---G----GACC-G--
* *
140871 CAAGGGTTGC-GGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGG
427 --AGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGG
* * * * * *
140935 GCACCATCACTGGAGCATCATCGGAGAACCTGACCGATGGCATTGGGGTTCC-AGCGATTGGGGG
490 GCACCATCGCCGGAGCATCGTCAGAGAACCTGACTGACGGCATTGGGGTTCCGA-CGATTGGGGG
* * * *
140999 GGTCGGGGGGGTGTACACACATGATGTGCGATGGGTGCTGATACTTGGCCCTTTTATTGGCCCCC
554 GG-C--GGGGGTGTGC-GACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
141064 TATCCCT
615 TATCCCT
141071 GTCATAACAT
Statistics
Matches: 3609, Mismatches: 414, Indels: 228
0.85 0.10 0.05
Matches are distributed among these distances:
858 6 0.00
859 230 0.06
860 21 0.01
861 2 0.00
862 12 0.00
863 214 0.06
864 265 0.07
865 441 0.12
866 6 0.00
867 3 0.00
868 2 0.00
869 12 0.00
871 450 0.12
872 199 0.06
873 336 0.09
874 215 0.06
875 77 0.02
876 15 0.00
877 136 0.04
878 6 0.00
880 2 0.00
882 4 0.00
884 1 0.00
885 3 0.00
886 3 0.00
887 1 0.00
889 4 0.00
890 1 0.00
891 1 0.00
893 12 0.00
894 133 0.04
895 219 0.06
896 1 0.00
897 254 0.07
898 49 0.01
899 212 0.06
900 2 0.00
901 59 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (871 bp):
AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGATCA
AACCTGAGGGTTGCGGCAGCAGGATCGGCAGCACATCTGAGGGGGACCGGATCGATCCCCGGCTT
GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAG
GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCT
GACTGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGTGTGCGACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
AAAATCTCGAACCGTAAAAAGTTTCA
Found at i:140776 original size:873 final size:873
Alignment explanation
Indices: 136052--141070 Score: 6285
Period size: 865 Copynumber: 5.7 Consensus size: 873
136042 AAATGGCCAC
* * *
136052 AAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* ** *
136117 ATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACCGTAGAAATATGAAGATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* * * *
136182 CCC-CCTACCACACTATTGATCCACGGCTTGCGCATCCCGCCTTTCTGGCCAGCGTAGTGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
* * * * * *
136246 CCGCCTGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTGCCAGTCTAAGATTAG
196 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAG
* * * * *
136311 ATCAGACCGAGGGTTGC-AGTAGCAGGATCGGCAGCACACTGAGGGGGACCTGGTCGATCCTCGG
261 ATCA-ACCGAGGGTTGCGA-CAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCC-CGA
*
136375 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
323 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * ** *
136440 ATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGGTGCACATGCTGGGCT
388 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCT
* *
136505 CGAGGATGTGCTGGTG-C-CATATTTTTTTCGCCC-GGG--CCA---CC--ATCA-C--CGGAGA
453 CGAGCATGTGCTGGTGCCGCAT-TTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
136557 ACCTGA-TCGACGGCATTGGGGTTTCAGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTAC
517 ACCTGACT-GACGGCATTGGGGTTCCAACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
136621 GATAGGTGCTGGTACTTGGCCTTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
581 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
136686 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGAAATG
646 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
136751 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTGTTTAGCTGAATTTTTTTAT
711 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
136816 GCATGCCAAAGAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAGAAAA
776 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
*
136881 TTTTTAAAAAATCTCGAACCCGTAAAAAGTTTCA
841 TTTTAAAAAAATCTCGAA-CCGTAAAAAGTTTCA
136915 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* * *
136980 ATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGGCAGAAATAGGAATATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* *
137045 CCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGCCTCTC-GGCTGGCGTAGT----GC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
* * * * *
137105 CCGCCCACCCGCTCGTTTCGTCAGTTGGCTTTGGCATACAGAGTTCACTCCCAGTCTAAGATCAG
196 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAG
* * * * * * * ** * *
137170 ATCGGATCGAGGGTTGCAATAGTAGGATCGACAGGAATCTGAGGGGGACCGGATCGATCCCCGGC
261 ATC-AACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGAT-CCCGAC
* * *
137235 TTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGTCCGTACGCTCGTTTCGTGGGTTGACTTAGGCA
324 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
137300 TACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTC
389 TATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * *
137365 -AGGCATGTGCTGGTGCTGTATTTTTTTTCACCCGGGGCACCATCGCCGGAGCATCGTCAGAGAA
454 GA-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
* * * * ** * * * *
137429 CTTGGA-TGGCAGCAGTACGGTTCCCGACGATTGGGGGGGC-AGGGGTGTGCAG-ACATGATGTG
518 CCT-GACTGACGGCATTGGGGTT-CCAACGATTAGGGGGCCGGGGGGTGTGC-GCACATGATGTG
* * *
137491 CGATGGGTGCTGGTACTTGGCCCTTACATTGGCTCCCTATCCCTCATCAAACCTGGAGAACTCAC
580 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
137556 ACCCGCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
645 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
137621 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
710 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
137686 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCAAAATTCCTTCTGCAAAA
775 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAA
137751 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCA
839 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCA
* * *
137786 AAAATCGTGAAAAATAGAACACGAGTCATCTTGCCATGAAACTTCACTTGGAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* * **
137851 ATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGATAGAAATATGAAGATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* * * * * ** *
137916 CCTACCTGCCACCCTATCGATCCACGACCTGCGCATCCCGCCTTTCTGATCGGCTTAGT----GC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
* * * * * *
137977 CCGCCCGCCCGCTCGTTTCATCGGTTGTCTTAGGCATACAAAGTTAATTCCCAGTCTGAGATTGG
196 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAG
* ** * * * * *
138042 ATCAAGCTGAGGGTTATGGCAGCAAGATTGGCAGCACGTTGAGGGGGACCCGATCGATCCCCGGC
261 ATCAA-CCGAGGGTTGCGACAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGAT-CCCGAC
* * * *
138107 TTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCTCGCATGCTCGTTTCGTGGACTTAGGCATACG
324 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-G-----GG--T--T
* * *
138172 GAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGT
379 GA---C-TT---AG-----GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* ** * *
138237 TGAGGGTGCACATGCTGGGCTC-AGGCATGTGCTACTGCCACATTTTTTTTTGCCCGGGGCACCA
432 TGCGGGTGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCA
* * *** * *
138301 TCGCCAGAGCCTCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGGTGATTGATGGGCCCGGG
496 TCGCCGGAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCAACGATT-AGGGGGCC-GG
* *
138366 GGGGTTGTGCACACATGATGTGCGATGGGTG-TGGGTGCTTGGCCCTTATATTGGCCCCCTATCC
559 GGGG-TGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
138430 CTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCA
622 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
138495 GTAGCCATTAAAGTGTCTGAAATGGGGAGACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
687 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
* * * * *
138560 AAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAATACACGAATCACGTCTACCAAGTTTG
752 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
** **
138625 GGGCCAAAACTCCTTCT-AAAAAAAATTAAAAAAATCTCGAACCGTAAAAAGTTTTG
817 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCA
** * *
138681 AAAATTATGAAGAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
138746 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* * * *
138811 CCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGCCTTTCTGGCTGGCGTAGTGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
** * * * *
138876 CCGCCCGTGCACTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGTTTGG
196 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAG
* * * *
138941 ATCAGACTGAGGGTTGCTG-CAGCAGGATTGACAGCACGCTGAGGGGGACCC-AGTCGATCCCCA
261 ATCA-ACCGAGGGTTGC-GACAGCAGGATCGGCAGCACGCTGAGGGGGACCCGA-TCGATCCCGA
* * * *
139004 GCTTGCGCATCCTGCCCTTCTGGCTGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGG
323 -CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * *
139069 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGAGTGCACATGCTGGGC
387 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGC
* * * *
139134 TCGAGCTTGTGCTGGTGCAGCATTTTTTTTCGCCCAGGGCACCATCGCCGGAGCATCGTCAGAGA
452 TCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
139199 ACCTGACCAGA-GGCATTGGGGTTCCGACGATTAGGGGGGGCCGGGGGGTGT--GCAC---A---
517 ACCTGA-CTGACGGCATTGGGGTTCCAACGATTA--GGGGGCCGGGGGGTGTGCGCACATGATGT
* *
139255 -C-AT--GTGCTGCTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
579 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
139316 CACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCAGCCAGTAGCCATTAAAGTGTCT-AGA
644 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-A
**
139380 ATGAAGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
708 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
139444 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
773 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
*
139509 AAATTTTAAAAAAAATCTCGAACCGTAAAAAGTTTTA
838 AAATTTT-AAAAAAATCTCGAACCGTAAAAAGTTTCA
* *
139546 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* *
139611 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATTTGAAGATGTGCCAAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
** * *
139676 CCCACCTAGTACCCTATCGGTCCACGGCTTGCGTATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
* * * *
139741 CCGCCCGCCCGCTCATTTCGTCGGTTGGCATAGGCATACAGAGTTCACTCCCAGTCTAAGATCAG
196 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAG
* * * * * * * * *
139806 ACCAAACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGTTGAGGGGGACCCG-GCTGATCCCCAG
261 ATC-AACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATC-GATCCCGA-
* * * * * *
139870 CTTGTGCATCCTGCCCCTTTTGCCGACTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTTGGC
323 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
139935 ATATGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCT
388 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCT
* * * *
140000 CGAGAATGTGCTGGTACCGCATTTTTTTTCG-CCGAGGCACCATCGCCGTAGCATCGTCGGAGAA
453 CGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
* * * *
140064 CCTGACTGATGGCATTGGGGTTCCAATGATTAGGGGGCCGGGGGGTGTGCGCACAAGATGTGCAA
518 CCTGACTGACGGCATTGGGGTTCCAACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
140129 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTTGAGAACTCACACC
583 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
140194 CCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
648 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
** *
140259 GACACTTTTTTCAAATGGTCACAAAATCCTGTATGCTTCGAGTTTTTAGCTGAATTTTTTTGTTC
713 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
140324 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
778 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
*
140389 TTAAAAAAATCTCCAACCGTAAAAAGTTTCA
843 TTAAAAAAATCTCGAACCGTAAAAAGTTTCA
* * * *
140420 AAAATCATGAAAAATA-AAAAAGAGTCGTCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* *
140484 ATTTTATGAATTCT-CAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAA
66 ATTGTATGAATT-TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAA
* * * *
140548 ACCCACCTACCACACTATTGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCTCG
130 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG
* * * * * *
140613 CCCGCCCACCCGTTTGTTTCGTCGGTTGGCTTAGGGATACTGAGTTCATTCCCAGTCTATGATTA
195 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTA
** * * * *
140678 GATCGAACCGATTGTTACGACAGCAAGATCGGCAGCACGCTGAGGGGGACCCAACCGATCCTCGA
260 GATC-AACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCC-CGA
** * * *
140743 CTTATGCATTCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGC
323 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T----
* *
140808 ATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
383 -T--AG-G--CA-T---A---T--G------GAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* *
140873 AGGGTTGC-GGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGC
427 AGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGC
* * * * * * *
140937 ACCATCACTGGAGCATCATCGGAGAACCTGACCGATGGCATTGGGGTTCCAGCGATTGGGGGGGT
492 ACCATCGCCGGAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCAACGATT-AGGGGG-
* * * * *
141002 CGGGGGGGTGTACACACATGATGTGCGATGGGTGCTGATACTTGGCCCTTTTATTGGCCCCCTAT
555 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
141067 CCCT
620 CCCT
141071 GTCATAACAT
Statistics
Matches: 3603, Mismatches: 433, Indels: 202
0.85 0.10 0.05
Matches are distributed among these distances:
858 1 0.00
859 236 0.07
860 14 0.00
861 5 0.00
862 16 0.00
863 201 0.06
864 270 0.07
865 456 0.13
866 5 0.00
867 2 0.00
868 3 0.00
869 1 0.00
871 450 0.12
872 196 0.05
873 312 0.09
874 217 0.06
875 75 0.02
876 4 0.00
877 141 0.04
878 11 0.00
879 1 0.00
880 1 0.00
881 1 0.00
882 5 0.00
884 2 0.00
885 4 0.00
886 3 0.00
888 1 0.00
889 4 0.00
891 2 0.00
893 12 0.00
894 133 0.04
895 203 0.06
896 5 0.00
897 249 0.07
898 49 0.01
899 244 0.07
900 7 0.00
901 61 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (873 bp):
AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAG
ATCAACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCGACTT
GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
TGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGA
GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
GACTGACGGCATTGGGGTTCCAACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
AAAAAATCTCGAACCGTAAAAAGTTTCA
Found at i:140842 original size:26 final size:26
Alignment explanation
Indices: 140806--140858 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
140796 GTTGACTTAG
140806 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
140832 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
140858 G
1 G
140859 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:141620 original size:58 final size:59
Alignment explanation
Indices: 141546--141942 Score: 493
Period size: 58 Copynumber: 6.6 Consensus size: 59
141536 TCGTGCGGAG
* * *
141546 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTT-GAAACTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTATTTTTA-A
* * *
141604 GGAAGATTGATACTTTCAACTTTTCCCCAAAAA-ATTGTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-T-TTTTTTGGAAACTTT-ATTTTTAA
* *
141665 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTT-ATTTTTAA
* * ** * *
141723 AGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTT-GAAATTTTATTTTTAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTTGGAAACTTTATTTTTAA
141782 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA----TTTTTTTGGAAACTTTATTTTTAA
* *
141845 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATTTTTTTTTTTGGAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTTGGAAACTTTATTTTTAA
141905 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTT
141943 CTTCTGATTT
Statistics
Matches: 298, Mismatches: 25, Indels: 32
0.84 0.07 0.09
Matches are distributed among these distances:
57 1 0.00
58 90 0.30
59 42 0.14
60 57 0.19
61 50 0.17
62 11 0.04
63 46 0.15
65 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTATTTTTAA
Found at i:141973 original size:5 final size:5
Alignment explanation
Indices: 141963--142051 Score: 78
Period size: 5 Copynumber: 17.6 Consensus size: 5
141953 TTATTTAAAG
*
141963 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* *
142012 AAAGA- AAAGT AAAACA AAAAT AAAAT AAAAT AAAAAT AAA
1 AAA-AT AAAAT AAAA-T AAAAT AAAAT AAAAT -AAAAT AAA
142052 GGTAAAAAGG
Statistics
Matches: 69, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
3 3 0.04
4 4 0.06
5 46 0.67
6 12 0.17
7 4 0.06
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:142012 original size:26 final size:25
Alignment explanation
Indices: 141963--142051 Score: 87
Period size: 26 Copynumber: 3.6 Consensus size: 25
141953 TTATTTAAAG
* *
141963 AAAAT-AAAAT-AATAAAACAAAAT
1 AAAATGAAAATAAAAAAAATAAAAT
141986 AAAAGTGAAAATAAAAAAAATAAAAT
1 AAAA-TGAAAATAAAAAAAATAAAAT
142012 -AAA-GAAAAGTAAAACAAAAATAAAAT
1 AAAATGAAAA-T-AAA-AAAAATAAAAT
*
142038 AAAATAAAAATAAA
1 AAAATGAAAATAAA
142052 GGTAAAAAGG
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
23 9 0.16
24 2 0.04
25 11 0.20
26 25 0.45
27 4 0.07
28 4 0.07
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (25 bp):
AAAATGAAAATAAAAAAAATAAAAT
Found at i:142046 original size:36 final size:36
Alignment explanation
Indices: 141963--142052 Score: 105
Period size: 35 Copynumber: 2.5 Consensus size: 36
141953 TTATTTAAAG
* * **
141963 AAAATAAAATAATA-AAACAAAATAAAAGTGAAAAT
1 AAAATAAAATAAAATAAAGAAAATAAAAGCAAAAAT
141998 AAAA-AAAATAAAATAAAGAAAAGTAAAA-CAAAAAT
1 AAAATAAAATAAAATAAAGAAAA-TAAAAGCAAAAAT
142033 AAAATAAAATAAAAATAAAG
1 AAAATAAAAT-AAAATAAAG
142053 GTAAAAAGGA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
34 8 0.17
35 20 0.43
36 10 0.21
37 9 0.19
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (36 bp):
AAAATAAAATAAAATAAAGAAAATAAAAGCAAAAAT
Found at i:142972 original size:40 final size:39
Alignment explanation
Indices: 142928--143005 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 39
142918 CGAAAAGAAA
142928 AAAAATA-AC-AGATAATTAAAAATAAAAATAAGATAAATCC
1 AAAAATATACAAGATAA--AAAAATAAAAATAA-ATAAATCC
*
142968 AAAAATATTACAAGATAAAAAAATAATAATAAATAAAT
1 AAAAATA-TACAAGATAAAAAAATAAAAATAAATAAAT
143006 AAATTAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
40 13 0.38
41 13 0.38
42 2 0.06
43 6 0.18
ACGTcount: A:0.69, C:0.05, G:0.04, T:0.22
Consensus pattern (39 bp):
AAAAATATACAAGATAAAAAAATAAAAATAAATAAATCC
Found at i:143004 original size:4 final size:4
Alignment explanation
Indices: 142982--143128 Score: 54
Period size: 4 Copynumber: 36.2 Consensus size: 4
142972 ATATTACAAG
* *
142982 ATAA AAAA AT-A AT-A ATAA ATAA ATAA ATTA AT-A ATATA AT-A ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA ATAA
* * * * * *
143027 ATAT ATAA CTAT ATAA ATAAA ATACCA TATAA TATTA ACAA AAAA ATAA
1 ATAA ATAA ATAA ATAA AT-AA ATA--A -ATAA -ATAA ATAA ATAA ATAA
* * * * * *
143076 ATAA ATAA AGAT ATAC ATAT ATTA ATAC ATAGTA AT-A ATAA ATAA AT-A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA--A ATAA ATAA ATAA ATAA
143124 ATAA A
1 ATAA A
143129 ATGCCTAAAA
Statistics
Matches: 107, Mismatches: 24, Indels: 24
0.69 0.15 0.15
Matches are distributed among these distances:
3 18 0.17
4 71 0.66
5 12 0.11
6 3 0.03
7 3 0.03
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.29
Consensus pattern (4 bp):
ATAA
Found at i:143015 original size:19 final size:18
Alignment explanation
Indices: 142982--143127 Score: 86
Period size: 19 Copynumber: 7.8 Consensus size: 18
142972 ATATTACAAG
*
142982 ATAAAAAAATAATAATAA
1 ATAAATAAATAATAATAA
143000 ATAAATAAATTAATAATATA
1 ATAAATAAA-TAATAATA-A
*
143020 AT-AATAAATATATAACTAT
1 ATAAATAAATA-ATAA-TAA
143039 ATAAATAAAATACCAT-ATAA
1 ATAAAT-AAATA--ATAATAA
* *
143059 TATTAACAAA-AA-AATAA
1 -ATAAATAAATAATAATAA
* *
143076 ATAAATAAAGATATACATAT
1 ATAAATAAATA-ATA-ATAA
* * *
143096 ATTAATACATAGTAAT-A
1 ATAAATAAATAATAATAA
143113 ATAAATAAATAATAA
1 ATAAATAAATAATAA
143128 AATGCCTAAA
Statistics
Matches: 98, Mismatches: 17, Indels: 27
0.69 0.12 0.19
Matches are distributed among these distances:
16 7 0.07
17 18 0.18
18 13 0.13
19 24 0.24
20 24 0.24
21 10 0.10
22 2 0.02
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.29
Consensus pattern (18 bp):
ATAAATAAATAATAATAA
Done.