Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168379.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_598, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21868
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32


Found at i:5301 original size:3 final size:3

Alignment explanation


    Indices: 5295--5344  Score: 100
    Period size: 3  Copynumber: 16.7  Consensus size: 3

       5285 TTTTGAAATA

                                                                           
       5295 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

              
       5343 AA
          1 AA

       5345 AGATTTAAAA


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   47  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
AAT

Found at i:8601 original size:2 final size:2

Alignment explanation


    Indices: 8594--8627  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       8584 TGCACAGAGG

                                                              
       8594 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       8628 TTAACAATTC


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:9929 original size:27 final size:27

Alignment explanation


    Indices: 9897--9952  Score: 112
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       9887 AATAAACTAA

                                       
       9897 GCCTTATAACCCATAACTCAGGGGTCG
          1 GCCTTATAACCCATAACTCAGGGGTCG

                                       
       9924 GCCTTATAACCCATAACTCAGGGGTCG
          1 GCCTTATAACCCATAACTCAGGGGTCG

              
       9951 GC
          1 GC

       9953 TGTATGAAAG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.25, C:0.30, G:0.23, T:0.21


Consensus pattern (27 bp):   
GCCTTATAACCCATAACTCAGGGGTCG

Found at i:19371 original size:20 final size:19

Alignment explanation


    Indices: 19333--19373  Score: 55
    Period size: 20  Copynumber: 2.1  Consensus size: 19

      19323 AAATTTTATG

                    *   *      
      19333 TTTTAATATATATTTATTA
          1 TTTTAATAAATAATTATTA

                                
      19352 TTTTAATTAAATAATTATTA
          1 TTTTAA-TAAATAATTATTA

              
      19372 TT
          1 TT

      19374 GTATCATTAC


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  19    6  0.32
  20   13  0.68

ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61


Consensus pattern (19 bp):   
TTTTAATAAATAATTATTA

Found at i:19485 original size:14 final size:14

Alignment explanation


    Indices: 19466--19494  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

      19456 TTTTATTCAG

                          
      19466 TAAACAAATTTAAT
          1 TAAACAAATTTAAT

                          
      19480 TAAACAAATTTAAT
          1 TAAACAAATTTAAT

             
      19494 T
          1 T

      19495 TTTATTTTAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38


Consensus pattern (14 bp):   
TAAACAAATTTAAT
Done.