Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 107 of 130
Found at i:20952347 original size:2 final size:2
Alignment explanation
Indices: 20952340--20952369 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
20952330 GTAACTTGTG
20952340 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20952370 AAACATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20959223 original size:20 final size:20
Alignment explanation
Indices: 20959140--20959224 Score: 77
Period size: 20 Copynumber: 4.3 Consensus size: 20
20959130 TATTGGGCAT
* * *
20959140 GTGGGGAGAGATTGGATGGG
1 GTGGGGAGGGATTGGGTGTG
*
20959160 GTAGGGAGGGATTGGGTGTG
1 GTGGGGAGGGATTGGGTGTG
* *
20959180 GT--GG-GGCATTGGGTGGAAG
1 GTGGGGAGGGATTGGGT-G-TG
20959199 GTGGGGAGGGATTGGGTGTG
1 GTGGGGAGGGATTGGGTGTG
20959219 GTGGGG
1 GTGGGG
20959225 TGTTGGGGGG
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
17 9 0.17
18 3 0.06
19 3 0.06
20 25 0.48
21 3 0.06
22 9 0.17
ACGTcount: A:0.14, C:0.01, G:0.62, T:0.22
Consensus pattern (20 bp):
GTGGGGAGGGATTGGGTGTG
Found at i:20959585 original size:26 final size:27
Alignment explanation
Indices: 20959522--20959585 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
20959512 TAATATTCAT
*
20959522 TTTGTTGTTTTGATATTTATATTATTG
1 TTTGTTATTTTGATATTTATATTATTG
** *
20959549 TTAATTCTTTTGATA-TTATATTATT-
1 TTTGTTATTTTGATATTTATATTATTG
20959574 TCTTGTTATTTT
1 T-TTGTTATTTT
20959586 TGTGTAATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.03
26 17 0.57
27 12 0.40
ACGTcount: A:0.20, C:0.03, G:0.09, T:0.67
Consensus pattern (27 bp):
TTTGTTATTTTGATATTTATATTATTG
Found at i:20960016 original size:10 final size:10
Alignment explanation
Indices: 20960003--20960031 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
20959993 AATTTTGTAT
20960003 ATAAAATTTA
1 ATAAAATTTA
20960013 ATAAAATTTA
1 ATAAAATTTA
20960023 ATAAAATTT
1 ATAAAATTT
20960032 TTTGTTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATAAAATTTA
Found at i:20963227 original size:6 final size:6
Alignment explanation
Indices: 20963218--20963253 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
20963208 TTTAAGTCCA
* *
20963218 GATGAT GATGAT GATGGT GATGGT GATGGT GATGGT
1 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT
20963254 ATGAATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.33
Consensus pattern (6 bp):
GATGGT
Found at i:20963235 original size:27 final size:27
Alignment explanation
Indices: 20963184--20963235 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
20963174 GTCCAACACC
* *
20963184 AAGTCAGAGTGATGATGGTGGTGGTTT
1 AAGTCAGAGTGATGATGATGATGGTTT
20963211 AAGTCCAGA-TGATGATGATGATGGT
1 AAGT-CAGAGTGATGATGATGATGGT
20963236 GATGGTGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.27, C:0.06, G:0.37, T:0.31
Consensus pattern (27 bp):
AAGTCAGAGTGATGATGATGATGGTTT
Found at i:20963626 original size:18 final size:18
Alignment explanation
Indices: 20963605--20963653 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
20963595 TTATCCACCT
* *
20963605 CAAATTTATCATTTACCA
1 CAAATGTATCATCTACCA
**
20963623 CAAATGTATCCCCTACCA
1 CAAATGTATCATCTACCA
20963641 CAAATGTATCATC
1 CAAATGTATCATC
20963654 CTCAAATATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.37, C:0.29, G:0.04, T:0.31
Consensus pattern (18 bp):
CAAATGTATCATCTACCA
Found at i:20967212 original size:27 final size:27
Alignment explanation
Indices: 20967181--20967242 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
20967171 TACATCTGTT
20967181 TATTTATTAGAAATAATTTTTTTAGTA
1 TATTTATTAGAAATAATTTTTTTAGTA
*
20967208 TATTTATTATAAATAATTTTTTTAGTA
1 TATTTATTAGAAATAATTTTTTTAGTA
*
20967235 TAATTATT
1 TATTTATT
20967243 TTAACTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (27 bp):
TATTTATTAGAAATAATTTTTTTAGTA
Found at i:20967237 original size:14 final size:14
Alignment explanation
Indices: 20967193--20967245 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
20967183 TTTATTAGAA
20967193 ATAATTTTTTTAGT
1 ATAATTTTTTTAGT
* *
20967207 AT-ATTTATTATA-A
1 ATAATTT-TTTTAGT
20967220 ATAATTTTTTTAGT
1 ATAATTTTTTTAGT
*
20967234 ATAATTATTTTA
1 ATAATTTTTTTA
20967246 ACTATTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
13 10 0.32
14 21 0.68
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (14 bp):
ATAATTTTTTTAGT
Found at i:20967254 original size:27 final size:27
Alignment explanation
Indices: 20967184--20967255 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
20967174 ATCTGTTTAT
* *
20967184 TTATTAGAAATAATTTTTTTAGTATAT
1 TTATTATAAATAATTTTTTTAGTATAA
20967211 TTATTATAAATAATTTTTTTAGTATAA
1 TTATTATAAATAATTTTTTTAGTATAA
* *
20967238 TTATTTTAACT-ATTTTTT
1 TTATTATAAATAATTTTTT
20967256 ACTGGAGAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 7 0.17
27 34 0.83
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (27 bp):
TTATTATAAATAATTTTTTTAGTATAA
Found at i:20968238 original size:2 final size:2
Alignment explanation
Indices: 20968231--20968271 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
20968221 TATCTTTCAT
*
20968231 TC TC TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
20968272 ATATATATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:20969700 original size:21 final size:21
Alignment explanation
Indices: 20969672--20969714 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
20969662 TAAAAATCCA
20969672 ATTCAC-AAAAATCCATCAGT
1 ATTCACAAAAAATCCATCAGT
*
20969692 ATTCTACAAAAAATTCATCAGT
1 ATTC-ACAAAAAATCCATCAGT
20969714 A
1 A
20969715 ATGATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 4 0.20
21 2 0.10
22 14 0.70
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.28
Consensus pattern (21 bp):
ATTCACAAAAAATCCATCAGT
Found at i:20972339 original size:6 final size:6
Alignment explanation
Indices: 20972325--20972379 Score: 74
Period size: 6 Copynumber: 9.2 Consensus size: 6
20972315 ACATGCGACC
* * * *
20972325 TATAGA TATATA TATATA TATATA TATATA TTTATA TTTATA TATTTA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
20972373 TATATA T
1 TATATA T
20972380 TTTTAAAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (6 bp):
TATATA
Found at i:20972341 original size:8 final size:8
Alignment explanation
Indices: 20972325--20972379 Score: 74
Period size: 8 Copynumber: 6.9 Consensus size: 8
20972315 ACATGCGACC
*
20972325 TATAGATA
1 TATATATA
20972333 TATATATA
1 TATATATA
20972341 TATATATA
1 TATATATA
*
20972349 TATATATT
1 TATATATA
*
20972357 TATATTTA
1 TATATATA
*
20972365 TATATTTA
1 TATATATA
20972373 TATATAT
1 TATATAT
20972380 TTTTAAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 42 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (8 bp):
TATATATA
Found at i:20972347 original size:14 final size:14
Alignment explanation
Indices: 20972325--20972379 Score: 74
Period size: 14 Copynumber: 3.9 Consensus size: 14
20972315 ACATGCGACC
*
20972325 TATAGATATATATA
1 TATATATATATATA
20972339 TATATATATATATA
1 TATATATATATATA
* *
20972353 TATTTATATTTATA
1 TATATATATATATA
*
20972367 TATTTATATATAT
1 TATATATATATAT
20972380 TTTTAAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
TATATATATATATA
Found at i:20974796 original size:12 final size:13
Alignment explanation
Indices: 20974774--20974811 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
20974764 TTTATTTTAG
20974774 TTAGTATTTTT-C
1 TTAGTATTTTTCC
20974786 TTAGTATTTTTTTCC
1 TTAGTA--TTTTTCC
20974801 TTAGTATTTTT
1 TTAGTATTTTT
20974812 TTCTTTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
14 5 0.22
15 7 0.30
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (13 bp):
TTAGTATTTTTCC
Found at i:20974799 original size:14 final size:14
Alignment explanation
Indices: 20974780--20974816 Score: 65
Period size: 15 Copynumber: 2.6 Consensus size: 14
20974770 TTAGTTAGTA
20974780 TTTTTCTTAGTATT
1 TTTTTCTTAGTATT
20974794 TTTTTCCTTAGTATT
1 TTTTT-CTTAGTATT
20974809 TTTTTCTT
1 TTTTTCTT
20974817 TCATGATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.11, C:0.11, G:0.05, T:0.73
Consensus pattern (14 bp):
TTTTTCTTAGTATT
Found at i:20974843 original size:16 final size:16
Alignment explanation
Indices: 20974822--20974876 Score: 58
Period size: 16 Copynumber: 3.3 Consensus size: 16
20974812 TTCTTTCATG
20974822 ATTAAATTTAGAAAAA
1 ATTAAATTTAGAAAAA
*
20974838 ATTAAAAATTA-AAAAA
1 ATT-AAATTTAGAAAAA
*
20974854 AATAAATTTGAGAAAAA
1 ATTAAATTT-AGAAAAA
20974871 TATTAA
1 -ATTAA
20974877 TTATCCAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 5 0.16
16 11 0.35
17 11 0.35
18 4 0.13
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.29
Consensus pattern (16 bp):
ATTAAATTTAGAAAAA
Found at i:20974869 original size:17 final size:16
Alignment explanation
Indices: 20974824--20974870 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
20974814 CTTTCATGAT
*
20974824 TAAATTTAGAAAAAAT
1 TAAATTTAGAAAAAAA
*
20974840 TAAAAATTA-AAAAAAA
1 T-AAATTTAGAAAAAAA
20974856 TAAATTTGAGAAAAA
1 TAAATTT-AGAAAAA
20974871 TATTAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 5 0.20
16 9 0.36
17 11 0.44
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (16 bp):
TAAATTTAGAAAAAAA
Found at i:20975293 original size:64 final size:64
Alignment explanation
Indices: 20975215--20975346 Score: 212
Period size: 65 Copynumber: 2.1 Consensus size: 64
20975205 TATTTTCTTT
* *
20975215 AAAAAAAGAGAAATAAA-AGAATTTTTAAATGGGCCCAAATGGTGAAAATTTTAAAAATTCCAAA
1 AAAAAAAGAGAAATAAAGAGAATTTTTAAATAGGCCCAAATGGTGAAAAATTTAAAAATT-CAAA
* *
20975279 AAAAAAAGAGAAATAAAGAGAATTTTTAAATAGGCCCAAATTGTGAAAAATTTAGAAATTCAAA
1 AAAAAAAGAGAAATAAAGAGAATTTTTAAATAGGCCCAAATGGTGAAAAATTTAAAAATTCAAA
20975343 AAAA
1 AAAA
20975347 GAAAATATTT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
64 25 0.40
65 38 0.60
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.23
Consensus pattern (64 bp):
AAAAAAAGAGAAATAAAGAGAATTTTTAAATAGGCCCAAATGGTGAAAAATTTAAAAATTCAAA
Found at i:20978856 original size:17 final size:16
Alignment explanation
Indices: 20978826--20978878 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 16
20978816 AAAAGGTCTC
*
20978826 AAAAAAAAATAAAAAA
1 AAAAAAAAAGAAAAAA
*
20978842 TAAAAAGAAAGAAAAAA
1 -AAAAAAAAAGAAAAAA
20978859 AAAATAAAAAGAGAAAAA
1 AAAA-AAAAAGA-AAAAA
20978877 AA
1 AA
20978879 TGAATGTCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
16 4 0.13
17 20 0.65
18 7 0.23
ACGTcount: A:0.87, C:0.00, G:0.08, T:0.06
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAA
Found at i:20978860 original size:21 final size:19
Alignment explanation
Indices: 20978831--20978878 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 19
20978821 GTCTCAAAAA
20978831 AAAATAAAAAATAAAAAGAAAG
1 AAAA-AAAAAATAAAAAG--AG
20978853 AAAAAAAAAATAAAAAGAG
1 AAAAAAAAAATAAAAAGAG
20978872 AAAAAAA
1 AAAAAAA
20978879 TGAATGTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.35
21 13 0.50
22 4 0.15
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.06
Consensus pattern (19 bp):
AAAAAAAAAATAAAAAGAG
Found at i:20979312 original size:12 final size:10
Alignment explanation
Indices: 20979248--20979339 Score: 64
Period size: 11 Copynumber: 8.9 Consensus size: 10
20979238 AGAAGAAAAA
20979248 AAAAAGAAAG
1 AAAAAGAAAG
*
20979258 -AAATGAAATG
1 AAAAAGAAA-G
**
20979268 AAAAAG-TGG
1 AAAAAGAAAG
*
20979277 AAAAAAGAGAG
1 -AAAAAGAAAG
20979288 AAAAA-AAAG
1 AAAAAGAAAG
20979297 AAAAAGGAAAG
1 AAAAA-GAAAG
20979308 AAAAAGAGAAG
1 AAAAAGA-AAG
*
20979319 AAAAAAAAATG
1 AAAAAGAAA-G
20979330 AAAAATGAAA
1 AAAAA-GAAA
20979340 ATGAGAGAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
9 16 0.25
10 16 0.25
11 29 0.45
12 3 0.05
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:20980577 original size:43 final size:44
Alignment explanation
Indices: 20980529--20980727 Score: 278
Period size: 43 Copynumber: 4.6 Consensus size: 44
20980519 TCTTAAATCC
*
20980529 TCAAATGAGAATCTTTAAGTATT-AAATGAGAATCTTTGAGTTT
1 TCAAATGAGAATCTTTAAGTTTTCAAATGAGAATCTTTGAGTTT
* * *
20980572 TCAAATAAGAATCTTTGAGTTTTCAAATGAGAATCTTTAAGTTT
1 TCAAATGAGAATCTTTAAGTTTTCAAATGAGAATCTTTGAGTTT
* * *
20980616 TCAAATAAAAATCTTTAAGTCTTCAAATGAGAATCTTTGAG-TT
1 TCAAATGAGAATCTTTAAGTTTTCAAATGAGAATCTTTGAGTTT
* * *
20980659 TCAAAGGAGAATCTTTGAGTTTTCAAATGAGAATATTTGAG-TT
1 TCAAATGAGAATCTTTAAGTTTTCAAATGAGAATCTTTGAGTTT
*
20980702 TCAAATGAGAATCTTTGAGTTTTCAA
1 TCAAATGAGAATCTTTAAGTTTTCAA
20980728 TCTTTGAGTC
Statistics
Matches: 140, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
43 84 0.60
44 56 0.40
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (44 bp):
TCAAATGAGAATCTTTAAGTTTTCAAATGAGAATCTTTGAGTTT
Found at i:20980582 original size:22 final size:22
Alignment explanation
Indices: 20980529--20980727 Score: 287
Period size: 22 Copynumber: 9.2 Consensus size: 22
20980519 TCTTAAATCC
* *
20980529 TCAAATGAGAATCTTTAAGTAT
1 TCAAATGAGAATCTTTGAGTTT
20980551 T-AAATGAGAATCTTTGAGTTT
1 TCAAATGAGAATCTTTGAGTTT
*
20980572 TCAAATAAGAATCTTTGAGTTT
1 TCAAATGAGAATCTTTGAGTTT
*
20980594 TCAAATGAGAATCTTTAAGTTT
1 TCAAATGAGAATCTTTGAGTTT
* * * *
20980616 TCAAATAAAAATCTTTAAGTCT
1 TCAAATGAGAATCTTTGAGTTT
20980638 TCAAATGAGAATCTTTGAG-TT
1 TCAAATGAGAATCTTTGAGTTT
*
20980659 TCAAAGGAGAATCTTTGAGTTT
1 TCAAATGAGAATCTTTGAGTTT
*
20980681 TCAAATGAGAATATTTGAG-TT
1 TCAAATGAGAATCTTTGAGTTT
20980702 TCAAATGAGAATCTTTGAGTTT
1 TCAAATGAGAATCTTTGAGTTT
20980724 TCAA
1 TCAA
20980728 TCTTTGAGTC
Statistics
Matches: 158, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
21 58 0.37
22 100 0.63
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
TCAAATGAGAATCTTTGAGTTT
Found at i:20980633 original size:87 final size:86
Alignment explanation
Indices: 20980529--20980727 Score: 292
Period size: 87 Copynumber: 2.3 Consensus size: 86
20980519 TCTTAAATCC
*
20980529 TCAAATGAGAATCTTTAAGTATT-AAATGAGAATCTTTGAGTTTTCAAATAAGAATCTTTGAGTT
1 TCAAATGAGAATCTTTAAGTATTCAAATGAGAATCTTTGAG-TTTCAAAGAAGAATCTTTGAGTT
*
20980593 TTCAAATGAGAATCTTTAAGTTT
65 TTCAAATGAGAATATTTAAG-TT
* * * *
20980616 TCAAATAAAAATCTTTAAGTCTTCAAATGAGAATCTTTGAGTTTCAAAGGAGAATCTTTGAGTTT
1 TCAAATGAGAATCTTTAAGTATTCAAATGAGAATCTTTGAGTTTCAAAGAAGAATCTTTGAGTTT
*
20980681 TCAAATGAGAATATTTGAGTT
66 TCAAATGAGAATATTTAAGTT
* *
20980702 TCAAATGAGAATCTTTGAGTTTTCAA
1 TCAAATGAGAATCTTTAAGTATTCAA
20980728 TCTTTGAGTC
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
86 24 0.24
87 59 0.59
88 17 0.17
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (86 bp):
TCAAATGAGAATCTTTAAGTATTCAAATGAGAATCTTTGAGTTTCAAAGAAGAATCTTTGAGTTT
TCAAATGAGAATATTTAAGTT
Found at i:20980731 original size:15 final size:15
Alignment explanation
Indices: 20980711--20980742 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
20980701 TTCAAATGAG
*
20980711 AATCTTTGAGTTTTC
1 AATCTTTGAGTCTTC
20980726 AATCTTTGAGTCTTC
1 AATCTTTGAGTCTTC
20980741 AA
1 AA
20980743 ATGAGAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (15 bp):
AATCTTTGAGTCTTC
Found at i:20980830 original size:43 final size:44
Alignment explanation
Indices: 20980782--20980877 Score: 142
Period size: 44 Copynumber: 2.2 Consensus size: 44
20980772 AGTTCGTCGA
20980782 ATGTGAATCTTT-AAACT-AGAATGAAAAGCTTTAAACTTTATGG
1 ATGTGAATCTTTAAAACTCA-AATGAAAAGCTTTAAACTTTATGG
* * *
20980825 ATGTGAATCTTTAAAATTCAAATGAAAAGTTTTAAACTTTTTGG
1 ATGTGAATCTTTAAAACTCAAATGAAAAGCTTTAAACTTTATGG
20980869 ATGTGAATC
1 ATGTGAATC
20980878 CCAAATTTAG
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
43 12 0.25
44 35 0.73
45 1 0.02
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.38
Consensus pattern (44 bp):
ATGTGAATCTTTAAAACTCAAATGAAAAGCTTTAAACTTTATGG
Found at i:20981061 original size:31 final size:31
Alignment explanation
Indices: 20981026--20981085 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
20981016 CCTGCATGTC
*
20981026 TAAAATCTTATGAATCAAATTCTT-GTGAAAT
1 TAAAATCTTAAGAATCAAATT-TTAGTGAAAT
*
20981057 TAAAATTTTAAGAATCAAATTTTAGTGAA
1 TAAAATCTTAAGAATCAAATTTTAGTGAA
20981086 TTCTTAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (31 bp):
TAAAATCTTAAGAATCAAATTTTAGTGAAAT
Found at i:20981848 original size:23 final size:24
Alignment explanation
Indices: 20981812--20981865 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
20981802 GCAAAGAGAA
**
20981812 AGAAAAAATTTTTTGG-ATTTTTT
1 AGAAAAAAAGTTTTGGAATTTTTT
*
20981835 TGAAAAAAAGTTTTGGAAATTTTTT
1 AGAAAAAAAGTTTTGG-AATTTTTT
20981860 AGAAAA
1 AGAAAA
20981866 TTTACAGATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 13 0.52
25 12 0.48
ACGTcount: A:0.43, C:0.00, G:0.15, T:0.43
Consensus pattern (24 bp):
AGAAAAAAAGTTTTGGAATTTTTT
Found at i:20982415 original size:18 final size:19
Alignment explanation
Indices: 20982375--20982416 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
20982365 CAAGCTATTT
* * *
20982375 TTTTTATTTTTCTTTTGTT
1 TTTTTATTTTTATTTAGTA
20982394 TTTTTA-TTTTATTTAGTA
1 TTTTTATTTTTATTTAGTA
20982412 TTTTT
1 TTTTT
20982417 CTTAGTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.12, C:0.02, G:0.05, T:0.81
Consensus pattern (19 bp):
TTTTTATTTTTATTTAGTA
Found at i:20982415 original size:19 final size:19
Alignment explanation
Indices: 20982373--20982416 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
20982363 ATCAAGCTAT
* *
20982373 TTTTTTTATTTTTCTTTTG
1 TTTTTTTATTTTTATTTAG
20982392 TTTTTTTA-TTTTATTTAG
1 TTTTTTTATTTTTATTTAG
20982410 TATTTTT
1 T-TTTTT
20982417 CTTAGTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.11, C:0.02, G:0.05, T:0.82
Consensus pattern (19 bp):
TTTTTTTATTTTTATTTAG
Found at i:20982437 original size:15 final size:13
Alignment explanation
Indices: 20982406--20982444 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 13
20982396 TTTATTTTAT
20982406 TTAGTA-TTTTTC
1 TTAGTATTTTTTC
20982418 TTAGTATTTATTTCC
1 TTAGTATTT-TTT-C
20982433 TTAGTATTTTTT
1 TTAGTATTTTTT
20982445 TTCTTTCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.25
13 2 0.08
14 6 0.25
15 10 0.42
ACGTcount: A:0.18, C:0.08, G:0.08, T:0.67
Consensus pattern (13 bp):
TTAGTATTTTTTC
Found at i:20990469 original size:23 final size:23
Alignment explanation
Indices: 20990429--20990480 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
20990419 TTTTATGAAC
*
20990429 AATAAATAATAAATTAATCAAAAT
1 AATAAATAATAAAATAAT-AAAAT
20990453 -ATAAATAA-AATAATAATAAAAT
1 AATAAATAATAA-AATAATAAAAT
20990475 AATAAA
1 AATAAA
20990481 ATCAAAGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (23 bp):
AATAAATAATAAAATAATAAAAT
Found at i:20990475 original size:8 final size:8
Alignment explanation
Indices: 20990432--20990482 Score: 54
Period size: 8 Copynumber: 6.5 Consensus size: 8
20990422 TATGAACAAT
20990432 AAATAATA
1 AAATAATA
*
20990440 AATTAATCA
1 AAATAAT-A
20990449 AAAT-AT-
1 AAATAATA
20990455 AAATAA-A
1 AAATAATA
20990462 ATAATAATA
1 A-AATAATA
20990471 AAATAATA
1 AAATAATA
20990479 AAAT
1 AAAT
20990483 CAAAGTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
6 4 0.11
7 2 0.06
8 24 0.67
9 6 0.17
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (8 bp):
AAATAATA
Found at i:20990510 original size:18 final size:18
Alignment explanation
Indices: 20990489--20990526 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
20990479 AAATCAAAGT
**
20990489 AAATCAAATCAAATAGAA
1 AAATCAAAGAAAATAGAA
20990507 AAATCAAAGAAAATAGAA
1 AAATCAAAGAAAATAGAA
20990525 AA
1 AA
20990527 GGGATTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.71, C:0.08, G:0.08, T:0.13
Consensus pattern (18 bp):
AAATCAAAGAAAATAGAA
Found at i:21010546 original size:53 final size:52
Alignment explanation
Indices: 21010448--21010547 Score: 148
Period size: 53 Copynumber: 1.9 Consensus size: 52
21010438 GCATACAAAC
* * *
21010448 TTACTTATTAAGAATTTTTTTCTTTTTAGAATTCTTTTTTTGTAAGTCAAGT
1 TTACCTATTAAAAATTTTTTTCTTTTTACAATTCTTTTTTTGTAAGTCAAGT
21010500 TTACCTATTAAAAATTTATTTT-TTTCTTACAATTCTTTTTTTGTAAGT
1 TTACCTATTAAAAATTT-TTTTCTTT-TTACAATTCTTTTTTTGTAAGT
21010548 TTTCTTGTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
52 18 0.42
53 25 0.58
ACGTcount: A:0.26, C:0.09, G:0.07, T:0.58
Consensus pattern (52 bp):
TTACCTATTAAAAATTTTTTTCTTTTTACAATTCTTTTTTTGTAAGTCAAGT
Found at i:21012240 original size:11 final size:11
Alignment explanation
Indices: 21012226--21012250 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
21012216 GGAAGTTCGT
21012226 CGGAAGATCAC
1 CGGAAGATCAC
21012237 CGGAAGATCAC
1 CGGAAGATCAC
21012248 CGG
1 CGG
21012251 TTTCTGGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.28, G:0.32, T:0.08
Consensus pattern (11 bp):
CGGAAGATCAC
Found at i:21012798 original size:31 final size:31
Alignment explanation
Indices: 21012760--21012860 Score: 102
Period size: 31 Copynumber: 3.3 Consensus size: 31
21012750 ATAAACCCAA
* *
21012760 AAATATATTACAAAAAAAATAATATAATAAT
1 AAATATATAACAAAAAAAATAAAATAATAAT
* * *
21012791 AAATATATAACTATATAAATAAAATACAT-AT
1 AAATATATAACAAAAAAAATAAAATA-ATAAT
21012822 AAATAT-TAACAAAATAAAATAAAAT-A-AAT
1 AAATATATAACAAAA-AAAATAAAATAATAAT
*
21012851 AAATAGATAA
1 AAATATATAA
21012861 ATAAAGATAT
Statistics
Matches: 57, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
29 8 0.14
30 9 0.16
31 38 0.67
32 2 0.04
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (31 bp):
AAATATATAACAAAAAAAATAAAATAATAAT
Found at i:21012936 original size:6 final size:6
Alignment explanation
Indices: 21012927--21012952 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
21012917 ACAAAAGAAA
21012927 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
21012953 TACAAGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:21012962 original size:22 final size:21
Alignment explanation
Indices: 21012886--21012966 Score: 65
Period size: 21 Copynumber: 3.7 Consensus size: 21
21012876 TATTAATACT
*
21012886 AATAATAAATAAATAATAAAATA
1 AATAA-AAATAAA-AATAAAAAA
* * *
21012909 CATAAAACA-CAAAAGAAAAAA
1 AATAAAA-ATAAAAATAAAAAA
*
21012930 AATAAAAATAAAAATAAAAAT
1 AATAAAAATAAAAATAAAAAA
*
21012951 AATACAAGATAAAAAT
1 AATA-AAAATAAAAAT
21012967 CAAATTGGGC
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
20 1 0.02
21 26 0.57
22 14 0.30
23 5 0.11
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.17
Consensus pattern (21 bp):
AATAAAAATAAAAATAAAAAA
Found at i:21014868 original size:21 final size:21
Alignment explanation
Indices: 21014829--21014873 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
21014819 CTTTTTAATG
* *
21014829 TTTTGATATTATTTTAATATAA
1 TTTTAATATTATTTAAATA-AA
21014851 TTTTAATA-TATTTAAATAAA
1 TTTTAATATTATTTAAATAAA
21014871 TTT
1 TTT
21014874 ATAAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTAATATTATTTAAATAAA
Found at i:21018621 original size:3 final size:3
Alignment explanation
Indices: 21018613--21018655 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
21018603 CATATATACC
21018613 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
21018656 CAATTGCATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:21018961 original size:191 final size:191
Alignment explanation
Indices: 21018632--21019025 Score: 770
Period size: 191 Copynumber: 2.1 Consensus size: 191
21018622 ATAATAATAA
21018632 TAATAATAATAATAATAATAATAACAATTGCATCTTCAAATTAATTCAACTAGTTTAAACCCAAT
1 TAAT-ATAATAATAATAATAATAACAATTGCATCTTCAAATTAATTCAACTAGTTTAAACCCAAT
21018697 GTATGAAAATATATTCATATATTAACAAATCTTAAATAAATATATATTTTTAAATGATAATATAA
65 GTATGAAAATATATTCATATATTAACAAATCTTAAATAAATATATATTTTTAAATGATAATATAA
21018762 CCTATAAAATTTACGAACAACTCATAACTTATATAATTATTTTTATTTAAATTTATATATTT
130 CCTATAAAATTTACGAACAACTCATAACTTATATAATTATTTTTATTTAAATTTATATATTT
21018824 TAATATAATAATAATAATAATAACAATTGCATCTTCAAATTAATTCAACTAGTTTAAACCCAATG
1 TAATATAATAATAATAATAATAACAATTGCATCTTCAAATTAATTCAACTAGTTTAAACCCAATG
*
21018889 TATGAAAATATATTCATATATTAACAAATCTTCAATAAATATATATTTTTAAATGATAATATAAC
66 TATGAAAATATATTCATATATTAACAAATCTTAAATAAATATATATTTTTAAATGATAATATAAC
21018954 CTATAAAATTTACGAACAACTCATAACTTATATAATTATTTTTATTTAAATTTATATATTT
131 CTATAAAATTTACGAACAACTCATAACTTATATAATTATTTTTATTTAAATTTATATATTT
21019015 TAATATAATAA
1 TAATATAATAA
21019026 AATTAATTAA
Statistics
Matches: 201, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
191 197 0.98
192 4 0.02
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (191 bp):
TAATATAATAATAATAATAATAACAATTGCATCTTCAAATTAATTCAACTAGTTTAAACCCAATG
TATGAAAATATATTCATATATTAACAAATCTTAAATAAATATATATTTTTAAATGATAATATAAC
CTATAAAATTTACGAACAACTCATAACTTATATAATTATTTTTATTTAAATTTATATATTT
Found at i:21019769 original size:3 final size:3
Alignment explanation
Indices: 21019761--21019803 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
21019751 TGACCACTAA
21019761 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
21019804 TCTTATTTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:21019870 original size:16 final size:17
Alignment explanation
Indices: 21019849--21019880 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
21019839 TATTAATATG
21019849 AACAT-AAGAAATTGAT
1 AACATAAAGAAATTGAT
21019865 AACATAAAGAAATTGA
1 AACATAAAGAAATTGA
21019881 AGATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.22
Consensus pattern (17 bp):
AACATAAAGAAATTGAT
Found at i:21020397 original size:31 final size:33
Alignment explanation
Indices: 21020362--21020436 Score: 111
Period size: 32 Copynumber: 2.4 Consensus size: 33
21020352 TATAGATGAA
**
21020362 ATCAAATGAAATTC-AA-GTGTATTAATATTTT
1 ATCAAATGAAATTCAAACGTACATTAATATTTT
21020393 ATCAAATGAAA-TCAAACGTACATTAATATTTT
1 ATCAAATGAAATTCAAACGTACATTAATATTTT
21020425 ATCAAATGAAAT
1 ATCAAATGAAAT
21020437 CATATTTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
30 2 0.05
31 13 0.33
32 24 0.62
ACGTcount: A:0.47, C:0.09, G:0.08, T:0.36
Consensus pattern (33 bp):
ATCAAATGAAATTCAAACGTACATTAATATTTT
Found at i:21021116 original size:32 final size:32
Alignment explanation
Indices: 21021055--21021117 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
21021045 AATAAAACCC
* ** *
21021055 ACGTGCATTAATATTTTATTAAATGAAATCAA
1 ACGTACATTAATATTTTACCAAATAAAATCAA
21021087 ACGTACATTAATATTTTACCAAATAAAATCA
1 ACGTACATTAATATTTTACCAAATAAAATCA
21021118 CATAAAATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (32 bp):
ACGTACATTAATATTTTACCAAATAAAATCAA
Found at i:21021281 original size:670 final size:660
Alignment explanation
Indices: 21020516--21022020 Score: 2126
Period size: 670 Copynumber: 2.3 Consensus size: 660
21020506 ATTATGGAGA
* *
21020516 ATTAATTTGATATATTTGCTTTCTATATTAACACATGAAATACATCAATTACTCAAATTGATACT
1 ATTAATTTAATATATTTGCTTTCTATATTTACACATGAAATACATCAATTACTCAAATTGATACT
*
21020581 ATATTTAATCAAATATAAATGTATCAAATAATTGATTAGAGAATCAATTTTTTTATAATTGTAAT
66 ATATTTAATCAAATATAAATGTATCAAATAATTGATTAGAGAATCAATTATTTTATAATTGTAAT
*
21020646 TGTAGTATTTATTAAATTATTAATTATATATTGATTGATTTAATTTGTCAAATTAAGAAATTTTT
131 TGTAGTATTTATTAAATTATTAATTATATATTGATTGATTTAATTTGTCAAATTAAAAAATTTTT
*
21020711 AAAATTTTAATACTTTTAATATGAATTGAATTGAGGGTGATTTAAAGTCAATAATAAAAACATAA
196 AAAATTTTAATACTTTTAATATGAATTGAATTGAGAGTGATTTAAAGTCAATAATAAAAACATAA
* * * * *
21020776 ATATTGTCAATTAGTAAGATGATTTTAAATTAT-AAGAGTTAATATTGAAATAATAAAAATTGTG
261 ATATAGACAATTAATAAGATAATTTTAAATTATGAA-AGTTAATATTGAAATAATAAAAATTATG
* * * *
21020840 AGTGAATAATGGTCTAATAATGACAAGTTGATTGATATTGAAATATTTTATTCTATCTTTAACAT
325 AGTGAATAATGGTCTAACAATGACAAGTTGATTGATATTAAAATATTTTATTCTACCATTAACAT
** * *
21020905 TTAGA-AGTCTTTTAATTTAGAACAAAAAAATAAATTAAATTTATTATATTTAATAATGGCAATA
390 TTAGAGA-TCCCTTAATTTAGAACAAAAAAACAAATTAAATTTATTATATTTAATAATGACAATA
21020969 AAAAATTAAATTTTAATTAAATCAATGTACATTAATATCTAAAATTTAAAATTATAAAATGTTAC
454 AAAAATTAAATTTTAATTAAATCAATGTACATTAATATCTAAAATTTAAAATTATAAAATGTTAC
* * * *
21021034 AAATGAAAACAAATAAAACCCACGTGCATTAATATTTTATTAAATGAAATCAAACGTACATTAAT
519 AAATGAAAACAAATGAAATCCACGTGTATTAATATTTTATCAAATGAAATCAAACGTACATTAAT
21021099 ATTTTACCAAATAAAATCACATAAAATCATATTTAATGAAATATATATCTATCAATCAAATATAA
584 A-TTT----AAT-AAATCA-AT-AAATCATATTTAATGAAATATA-ATCTATCAATCAAATATAA
21021164 ATTAACAAAATATTTCTGTTCC
640 ATTAACAAAATATTT-TGTTCC
* * *
21021186 ATTAATTTAATATATTTGCTTTCTATATTTATACATGAAGTACATCAATTACTCAAAATGATACT
1 ATTAATTTAATATATTTGCTTTCTATATTTACACATGAAATACATCAATTACTCAAATTGATACT
* *
21021251 ATATTTAATCAAATATAAATGTATCAAATAATTTATTAGAGAATTAATTATTTTATAATTGTAAT
66 ATATTTAATCAAATATAAATGTATCAAATAATTGATTAGAGAATCAATTATTTTATAATTGTAAT
21021316 TGTAGTATTTATTAAATTATTAATTATATATTGATTGATTTAATTTGTCAAATTAAAAAATTTTT
131 TGTAGTATTTATTAAATTATTAATTATATATTGATTGATTTAATTTGTCAAATTAAAAAATTTTT
21021381 AAAATTTTAATACTTTTAATATGAATTGAATTGAGAGTGATTTAAAGTCAATAATAAAAACATAA
196 AAAATTTTAATACTTTTAATATGAATTGAATTGAGAGTGATTTAAAGTCAATAATAAAAACATAA
* *
21021446 ATATAGACAATTAATAAGATAATTTTAAATTATGAAAGTTAATATTGAAATAATAAAATTTATTA
261 ATATAGACAATTAATAAGATAATTTTAAATTATGAAAGTTAATATTGAAATAATAAAAATTATGA
* * * *
21021511 GTGAATAATTGTCTAACAATGGCAAGTTGATTGATATTAAAATATTTTATTTTACCATTAATATT
326 GTGAATAATGGTCTAACAATGACAAGTTGATTGATATTAAAATATTTTATTCTACCATTAACATT
* * *
21021576 TAGAGATCCCTTAATTTAGAACAATAAAACAAATT-AATTTACTATATTTAATAATGTCAATAAA
391 TAGAGATCCCTTAATTTAGAACAAAAAAACAAATTAAATTTATTATATTTAATAATGACAATAAA
* *
21021640 AAATTAAATTTTGATTAAATCAATGTACATTAATATC--AAATAATAAAATTATAAAATGTTACA
456 AAATTAAATTTTAATTAAATCAATGTACATTAATATCTAAAAT-TTAAAATTATAAAATGTTACA
* * * * * * *
21021703 AATTAAAACAAATGAAATCAACTTGTATTAATATTTTATCAAATAAAATCAAATG-A-AATCATA
520 AATGAAAACAAATGAAATCCACGTGTATTAATATTTTATCAAATGAAATCAAACGTACATTAATA
* * * ** *
21021766 TTTAATGAAAT--ATAAAT-ATA-TTAATCAAATATAA---ATTAATAAAATATTTTATT-CCAT
585 TTTAAT-AAATCAATAAATCATATTTAATGAAATATAATCTATCAATCAAATA-TAAATTAACA-
* * *
21021823 AAAT-TTAATTATAGACA
647 AAATATT--TTGT--TCC
* * *
21021840 ATTAATTTGATATATTTGCCTTATATATTTACACATGAAATACATCAATTACTC-AATTGGATAC
1 ATTAATTTAATATATTTGCTTTCTATATTTACACATGAAATACATCAATTACTCAAATT-GATAC
* * * * *
21021904 AATATTTAATCAAATATAAATGTATCAAATAATTGATTAGATAATCAACTATTTTATAGTTTTAA
65 TATATTTAATCAAATATAAATGTATCAAATAATTGATTAGAGAATCAATTATTTTATAATTGTAA
* *
21021969 TTGTAGTATTTATTAATTTATTAATTAAATATTGATTGATTTAATTTGTCAA
130 TTGTAGTATTTATTAAATTATTAATTATATATTGATTGATTTAATTTGTCAA
21022021 TGTCATAATG
Statistics
Matches: 756, Mismatches: 69, Indels: 36
0.88 0.08 0.04
Matches are distributed among these distances:
651 14 0.02
652 10 0.01
653 4 0.01
654 164 0.22
655 12 0.02
656 3 0.00
657 4 0.01
658 2 0.00
661 7 0.01
665 3 0.00
666 5 0.01
667 5 0.01
668 66 0.09
669 63 0.08
670 391 0.52
671 3 0.00
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (660 bp):
ATTAATTTAATATATTTGCTTTCTATATTTACACATGAAATACATCAATTACTCAAATTGATACT
ATATTTAATCAAATATAAATGTATCAAATAATTGATTAGAGAATCAATTATTTTATAATTGTAAT
TGTAGTATTTATTAAATTATTAATTATATATTGATTGATTTAATTTGTCAAATTAAAAAATTTTT
AAAATTTTAATACTTTTAATATGAATTGAATTGAGAGTGATTTAAAGTCAATAATAAAAACATAA
ATATAGACAATTAATAAGATAATTTTAAATTATGAAAGTTAATATTGAAATAATAAAAATTATGA
GTGAATAATGGTCTAACAATGACAAGTTGATTGATATTAAAATATTTTATTCTACCATTAACATT
TAGAGATCCCTTAATTTAGAACAAAAAAACAAATTAAATTTATTATATTTAATAATGACAATAAA
AAATTAAATTTTAATTAAATCAATGTACATTAATATCTAAAATTTAAAATTATAAAATGTTACAA
ATGAAAACAAATGAAATCCACGTGTATTAATATTTTATCAAATGAAATCAAACGTACATTAATAT
TTAATAAATCAATAAATCATATTTAATGAAATATAATCTATCAATCAAATATAAATTAACAAAAT
ATTTTGTTCC
Found at i:21021795 original size:19 final size:21
Alignment explanation
Indices: 21021749--21021801 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 21
21021739 TATCAAATAA
*
21021749 AATCAAAT-GAAATCATATTT
1 AATCAAATATAAATCATATTT
*
21021769 AATGAAATATAAAT-ATA-TT
1 AATCAAATATAAATCATATTT
21021788 AATCAAATATAAAT
1 AATCAAATATAAAT
21021802 TAATAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 15 0.52
20 10 0.34
21 4 0.14
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.34
Consensus pattern (21 bp):
AATCAAATATAAATCATATTT
Found at i:21022562 original size:59 final size:59
Alignment explanation
Indices: 21022501--21022955 Score: 577
Period size: 59 Copynumber: 7.7 Consensus size: 59
21022491 TTGTGCAGGA
* ** * * *
21022501 AAAATTGATACTTTTAA-TTTTTTTCAAAAATTATTCTTTTGAAACTTTAATTTTGAA-G
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTTGAAAATTT-ATTTTTAAGG
21022559 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-TTATTTTTTTGAAAATTTATTTTTAAGG
* * *
21022619 AAAATTGATACTTTCAATTTTTCCCCAAAAA-TA-TTTTTTGAAAACTTT-TCTTTTCAGGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTTGAAAA-TTTAT-TTTT-AAGG
*
21022678 AAAATTGATACTTTCAACTTTTCCTCAAAAGTTGATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATT-ATTTTTTTGAAAATTTATTTTTAAGG
* * *
21022738 AAAATTAATACTTTCAACTTTTCCTCAAAAA-TATTTTTTTTTAAATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTA-TTTTTTTGAAAATTTATTTTTAAGG
* * * *
21022797 AAAATTGATACTTTCAACTTTTTCC-CAAAAA-TATTTTTTGGAAACTTTGATTTTCAAGA
1 AAAATTGATACTTTCAAC-TTTTCCTCAAAAATTATTTTTTTGAAAATTT-ATTTTTAAGG
* *
21022856 AAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-TTATTTTTTTGAAAATTTATTTTTAAGG
*
21022916 AAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTT
21022956 TTATTTTTAT
Statistics
Matches: 352, Mismatches: 29, Indels: 32
0.85 0.07 0.08
Matches are distributed among these distances:
57 12 0.03
58 52 0.15
59 130 0.37
60 124 0.35
61 22 0.06
62 12 0.03
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.47
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTTGAAAATTTATTTTTAAGG
Found at i:21022621 original size:17 final size:16
Alignment explanation
Indices: 21022586--21022624 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
21022576 CTTTTCCTCA
**
21022586 AAAATTTATTTTTTTG
1 AAAATTTATTTTTAGG
21022602 AAAATTTATTTTTAAGG
1 AAAATTTATTTTT-AGG
21022619 AAAATT
1 AAAATT
21022625 GATACTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (16 bp):
AAAATTTATTTTTAGG
Found at i:21022716 original size:119 final size:116
Alignment explanation
Indices: 21022501--21022955 Score: 544
Period size: 119 Copynumber: 3.8 Consensus size: 116
21022491 TTGTGCAGGA
* ** * *
21022501 AAAATTGATACTTTTAA-TTTTTTTCAAAAATTATTCTTTTGAAACTTTAATTTTGAA-GAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTATT-TTTTGAAAATTTTATTTT-AAGGAAAAT
21022564 TGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAAATTTATTTTTAAGG
64 TGATACTTTCAACTTTTCCTC-AAAA-TTATTTTTTTGAAAATTTATTTTTAAGG
* * * *
21022619 AAAATTGATACTTTCAATTTTTCCCCAAAAA-TATTTTTTGAAAACTTTTCTTTTCAGGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTGAAAA-TTTTATTTT-AAGGAAAAT
21022683 TGATACTTTCAACTTTTCCTCAAAAGTTGATTTTTTTGAAAATTTATTTTTAAGG
64 TGATACTTTCAACTTTTCCTCAAAA-TT-ATTTTTTTGAAAATTTATTTTTAAGG
* **
21022738 AAAATTAATACTTTCAACTTTTCCTCAAAAA-TATTTTTTTTTAAATTTTATTTTTAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTA-TTTTTTGAAAATTTTA-TTTTAAGGAAAAT
* * * * *
21022802 TGATACTTTCAACTTTTTCC-CAAAAATATTTTTTGGAAACTTTGATTTTCAAGA
64 TGATACTTTCAAC-TTTTCCTCAAAATTATTTTTTTGAAAATTT-ATTTTTAAGG
* *
21022856 AAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTTTGAAAA-TTTATTTTTAAGAAAAA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA--TTATTTTTTGAAAATTTTA-TTTTAAGGAAAA
* *
21022920 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
63 TTGATACTTTCAACTTTTCCTCAAAATTATTTTTTT
21022956 TTATTTTTAT
Statistics
Matches: 297, Mismatches: 28, Indels: 23
0.85 0.08 0.07
Matches are distributed among these distances:
117 22 0.07
118 79 0.27
119 167 0.56
120 28 0.09
121 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.47
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTGAAAATTTTATTTTAAGGAAAATTG
ATACTTTCAACTTTTCCTCAAAATTATTTTTTTGAAAATTTATTTTTAAGG
Found at i:21022844 original size:178 final size:177
Alignment explanation
Indices: 21022496--21022967 Score: 693
Period size: 178 Copynumber: 2.7 Consensus size: 177
21022486 TGTTTTTGTG
* ** * * *
21022496 CAGGAAAAATTGATACTTTTAA-TTTTTTTCAAAAATTATTCTTTTGAAACTTTAATTTTGAA-G
1 CAGGAAAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTTGAAAATTT-ATTTTTAAGG
*
21022559 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTATTTTTTTGAAAATTTATTTTTAAGGAAAA
65 AAAATTGATACTTTCAACTTTTCCTCAAAAATATT-TTTTTTT-AAATTTTATTTTTAAGGAAAA
**
21022623 TTGATACTTTCAATTTTTCCCCAAAAATATTTTTTGAAAACTTTTCTTTT
128 TTGATACTTTCAATTTTTCCCCAAAAATATTTTTTGAAAACTTTGATTTT
* *
21022673 CAGGGAAAATTGATACTTTCAACTTTTCCTCAAAAGTTGATTTTTTTGAAAATTTATTTTTAAGG
1 CAGGAAAAATTGATACTTTCAACTTTTCCTCAAAAATT-ATTTTTTTGAAAATTTATTTTTAAGG
*
21022738 AAAATTAATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTAAATTTTATTTTTAAGGAAAATT
65 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTAAATTTTATTTTTAAGGAAAATT
*
21022803 GATACTTTCAACTTTTT-CCCAAAAATATTTTTTGGAAACTTTGATTTT
130 GATACTTTCAA-TTTTTCCCCAAAAATATTTTTTGAAAACTTTGATTTT
* * *
21022851 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTTTGAAAATTTATTTTTAAGA
1 CAGGAAAAATTGATACTTTCAACTTTTCCTCAAAAA-TTATTTTTTTGAAAATTTATTTTTAAGG
* *
21022916 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTT-ATTTTTATTT
65 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTAAATTTTATTT
21022968 AAAGAAAATA
Statistics
Matches: 268, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
177 29 0.11
178 177 0.66
179 60 0.22
180 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.47
Consensus pattern (177 bp):
CAGGAAAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTTGAAAATTTATTTTTAAGGA
AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTAAATTTTATTTTTAAGGAAAATTG
ATACTTTCAATTTTTCCCCAAAAATATTTTTTGAAAACTTTGATTTT
Found at i:21022996 original size:20 final size:20
Alignment explanation
Indices: 21022971--21023008 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
21022961 TTTATTTAAA
* *
21022971 GAAAATAGAATAATAAAAGT
1 GAAAATAAAAAAATAAAAGT
21022991 GAAAATAAAAAAATAAAA
1 GAAAATAAAAAAATAAAA
21023009 TAAAGAAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.16
Consensus pattern (20 bp):
GAAAATAAAAAAATAAAAGT
Found at i:21023003 original size:15 final size:14
Alignment explanation
Indices: 21022979--21023051 Score: 62
Period size: 15 Copynumber: 5.1 Consensus size: 14
21022969 AAGAAAATAG
*
21022979 AATAATAAAAGTGAA
1 AATAAAAAAAGT-AA
21022994 AATAAAAAAA-TAA
1 AATAAAAAAAGTAA
21023007 AATAAAGAAAAGTAA
1 AATAAA-AAAAGTAA
* *
21023022 AACAAAAATA--AA
1 AATAAAAAAAGTAA
21023034 AATAAAATAAAGATAA
1 AATAAAA-AAAG-TAA
21023050 AA
1 AA
21023052 AGAATATTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
12 8 0.17
13 10 0.21
14 8 0.17
15 17 0.36
16 4 0.09
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (14 bp):
AATAAAAAAAGTAA
Found at i:21023010 original size:28 final size:27
Alignment explanation
Indices: 21022967--21023038 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 27
21022957 TATTTTTATT
* *
21022967 TAAAGAAAATAGAATAATAAAAGTGAAAA
1 TAAA-AAAATAAAATAAGAAAAGT-AAAA
21022996 TAAAAAAATAAAATAAAGAAAAGTAAAA
1 TAAAAAAATAAAAT-AAGAAAAGTAAAA
* *
21023024 CAAAAATA-AAAATAA
1 TAAAAAAATAAAATAA
21023039 AATAAAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 5 0.13
28 19 0.50
29 12 0.32
ACGTcount: A:0.75, C:0.01, G:0.08, T:0.15
Consensus pattern (27 bp):
TAAAAAAATAAAATAAGAAAAGTAAAA
Found at i:21023034 original size:17 final size:17
Alignment explanation
Indices: 21022992--21023052 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
21022982 AATAAAAGTG
21022992 AAAATAAAAA-AATAA-A
1 AAAATAAAAATAA-AACA
* *
21023008 ATAAAGAAAAGTAAAACA
1 A-AAATAAAAATAAAACA
*
21023026 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAACA
*
21023043 AAGATAAAAA
1 AAAATAAAAA
21023053 GAATATTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
16 1 0.03
17 31 0.86
18 4 0.11
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.13
Consensus pattern (17 bp):
AAAATAAAAATAAAACA
Found at i:21023371 original size:11 final size:11
Alignment explanation
Indices: 21023355--21023400 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
21023345 AGCAGAAATC
21023355 CTCTCTCTTCT
1 CTCTCTCTTCT
21023366 CTCTCTCTTCT
1 CTCTCTCTTCT
* *
21023377 -T-TCTTTTTT
1 CTCTCTCTTCT
*
21023386 CTCTCGCTTCT
1 CTCTCTCTTCT
21023397 CTCT
1 CTCT
21023401 AAACGATCGA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
9 6 0.21
10 2 0.07
11 20 0.71
ACGTcount: A:0.00, C:0.39, G:0.02, T:0.59
Consensus pattern (11 bp):
CTCTCTCTTCT
Found at i:21024068 original size:11 final size:11
Alignment explanation
Indices: 21024049--21024078 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
21024039 TTAGATAAAT
21024049 AAAAA-AAAGG
1 AAAAATAAAGG
21024059 AAAAATAAAGG
1 AAAAATAAAGG
21024070 AAAAATAAA
1 AAAAATAAA
21024079 ATAAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.26
11 14 0.74
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (11 bp):
AAAAATAAAGG
Found at i:21024156 original size:24 final size:24
Alignment explanation
Indices: 21024120--21024176 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
21024110 TAATAAATAA
** *
21024120 ATACATAGGATATAAAGGAAAAAT
1 ATACATAAAATATAAAAGAAAAAT
*
21024144 ATACATAAAATATAAAATAAAAAT
1 ATACATAAAATATAAAAGAAAAAT
*
21024168 A-AAATAAAA
1 ATACATAAAA
21024177 AAAACAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 7 0.25
24 21 0.75
ACGTcount: A:0.68, C:0.04, G:0.07, T:0.21
Consensus pattern (24 bp):
ATACATAAAATATAAAAGAAAAAT
Found at i:21024162 original size:18 final size:18
Alignment explanation
Indices: 21024139--21024193 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
21024129 ATATAAAGGA
*
21024139 AAAATATACATAAAATAT
1 AAAATAAACATAAAATAT
*
21024157 AAAATAAAAATAAAATA-
1 AAAATAAACATAAAATAT
21024174 AAAA-AAACA-AAAATAT
1 AAAATAAACATAAAATAT
21024190 AAAA
1 AAAA
21024194 CAAAATTGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 6 0.18
16 8 0.24
17 4 0.12
18 15 0.45
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAATAAACATAAAATAT
Found at i:21024169 original size:11 final size:11
Alignment explanation
Indices: 21024138--21024198 Score: 54
Period size: 12 Copynumber: 5.4 Consensus size: 11
21024128 GATATAAAGG
*
21024138 AAAAATATACAT
1 AAAAATA-AAAT
21024150 AAAATATAAAAT
1 AAAA-ATAAAAT
21024162 AAAAATAAAAT
1 AAAAATAAAAT
21024173 AAAAA-AAACA-
1 AAAAATAAA-AT
*
21024183 AAAATATAAAAC
1 AAAA-ATAAAAT
21024195 AAAA
1 AAAA
21024199 TTGGGCTTAC
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
10 7 0.16
11 15 0.35
12 18 0.42
13 3 0.07
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:21024391 original size:21 final size:24
Alignment explanation
Indices: 21024346--21024396 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
21024336 AACATTTTCA
21024346 TTTTTTGTTTCTTTTGCTTTCTTGT
1 TTTTTTGTTTCTTTT-CTTTCTTGT
21024371 TTTTTTGTTT-TTTT-TTT-TTGT
1 TTTTTTGTTTCTTTTCTTTCTTGT
21024392 TTTTT
1 TTTTT
21024397 GACCAAAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 9 0.35
22 3 0.12
24 4 0.15
25 10 0.38
ACGTcount: A:0.00, C:0.06, G:0.10, T:0.84
Consensus pattern (24 bp):
TTTTTTGTTTCTTTTCTTTCTTGT
Found at i:21024396 original size:8 final size:8
Alignment explanation
Indices: 21024346--21024389 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
21024336 AACATTTTCA
21024346 TTTTTTGT
1 TTTTTTGT
*
21024354 TTCTTTTGC
1 TT-TTTTGT
*
21024363 TTTCTTGT
1 TTTTTTGT
21024371 TTTTTTGT
1 TTTTTTGT
21024379 TTTTTT-T
1 TTTTTTGT
21024386 TTTT
1 TTTT
21024390 GTTTTTTGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
7 5 0.16
8 19 0.61
9 7 0.23
ACGTcount: A:0.00, C:0.07, G:0.09, T:0.84
Consensus pattern (8 bp):
TTTTTTGT
Found at i:21024516 original size:44 final size:43
Alignment explanation
Indices: 21024404--21024519 Score: 124
Period size: 44 Copynumber: 2.7 Consensus size: 43
21024394 TTTGACCAAA
* * * *
21024404 ACTCCTCTAAGCAGAGGCTCAACGACTTTGAGAAACATAAATG
1 ACTCCTCTAAACAGAGGCTCAACGACTTTAAAAAAAATAAATG
* * * * *
21024447 GCTCTTCTAATCAGAAGCTCAACGACTTTAAAAAAAAATAAATT
1 ACTCCTCTAAACAGAGGCTCAACGACTTT-AAAAAAAATAAATG
* *
21024491 ACTCCTCTAAACAGAGGCACCACGACTTT
1 ACTCCTCTAAACAGAGGCTCAACGACTTT
21024520 GGAAAGTAAA
Statistics
Matches: 58, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
43 25 0.43
44 33 0.57
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.23
Consensus pattern (43 bp):
ACTCCTCTAAACAGAGGCTCAACGACTTTAAAAAAAATAAATG
Found at i:21024538 original size:25 final size:25
Alignment explanation
Indices: 21024510--21024561 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
21024500 AACAGAGGCA
21024510 CCACGACTTTGGAAAGTAAATTGCT
1 CCACGACTTTGGAAAGTAAATTGCT
21024535 CCACGACTTTGGAAAGTAAATTGCT
1 CCACGACTTTGGAAAGTAAATTGCT
21024560 CC
1 CC
21024562 TCTAAACAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
CCACGACTTTGGAAAGTAAATTGCT
Found at i:21024687 original size:42 final size:41
Alignment explanation
Indices: 21024535--21024709 Score: 323
Period size: 41 Copynumber: 4.2 Consensus size: 41
21024525 GTAAATTGCT
21024535 CCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
1 CCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
*
21024576 CCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
1 CCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
21024617 CCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
1 CCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
*
21024658 TCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCA
1 CCACGACTTTG-GAAAGTAAATTGCTCCTCTAAACAGAGGCA
21024700 CCACGACTTT
1 CCACGACTTT
21024710 AAAAAATAAA
Statistics
Matches: 129, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
41 90 0.70
42 39 0.30
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (41 bp):
CCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
Found at i:21025963 original size:12 final size:12
Alignment explanation
Indices: 21025946--21026037 Score: 52
Period size: 12 Copynumber: 7.9 Consensus size: 12
21025936 CCCTTTCAGG
*
21025946 TTTTTTCCTTTT
1 TTTTTTCATTTT
21025958 TTTTTTCA----
1 TTTTTTCATTTT
21025966 TTTTTTCATTTT
1 TTTTTTCATTTT
** *
21025978 TTCATTCATTCAT
1 TTTTTTCATT-TT
* *
21025991 TCTTTT-GTTTT
1 TTTTTTCATTTT
21026002 TTTTTTC-TTTT
1 TTTTTTCATTTT
*
21026013 TTTTTTCATCATCT
1 TTTTTTCAT--TTT
21026027 TTTTTTCATTT
1 TTTTTTCATTT
21026038 CTCATTTTTC
Statistics
Matches: 59, Mismatches: 12, Indels: 18
0.66 0.13 0.20
Matches are distributed among these distances:
8 8 0.14
11 17 0.29
12 19 0.32
13 4 0.07
14 11 0.19
ACGTcount: A:0.09, C:0.14, G:0.01, T:0.76
Consensus pattern (12 bp):
TTTTTTCATTTT
Found at i:21025969 original size:8 final size:8
Alignment explanation
Indices: 21025958--21025983 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
21025948 TTTTCCTTTT
21025958 TTTTTTCA
1 TTTTTTCA
21025966 TTTTTTCA
1 TTTTTTCA
21025974 TTTTTTCA
1 TTTTTTCA
21025982 TT
1 TT
21025984 CATTCATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTTCA
Found at i:21025989 original size:16 final size:16
Alignment explanation
Indices: 21025958--21025996 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
21025948 TTTTCCTTTT
**
21025958 TTTTTTCATTTTTTCA
1 TTTTTTCATTCATTCA
21025974 TTTTTTCATTCATTCA
1 TTTTTTCATTCATTCA
21025990 TTCTTTT
1 TT-TTTT
21025997 GTTTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTTCATTCATTCA
Found at i:21027161 original size:15 final size:15
Alignment explanation
Indices: 21027141--21027174 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
21027131 AGATAAATAA
21027141 AAAAAAAAGAAAAAT
1 AAAAAAAAGAAAAAT
*
21027156 AAAAAAAGGAAAAAT
1 AAAAAAAAGAAAAAT
21027171 AAAA
1 AAAA
21027175 TAAATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.09, T:0.06
Consensus pattern (15 bp):
AAAAAAAAGAAAAAT
Found at i:21027238 original size:25 final size:25
Alignment explanation
Indices: 21027210--21027291 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
21027200 TAATAATAAA
** *
21027210 AAAATAAATACATAGGATATAAAGG
1 AAAATAAATACATAAAATATAAAAG
* *
21027235 AAAATATATACATAAAATATAAAAT
1 AAAATAAATACATAAAATATAAAAG
* * *
21027260 AAAATAAAAAGAATAAAAATATAAAAC
1 AAAATAAATA-CAT-AAAATATAAAAG
21027287 AAAAT
1 AAAAT
21027292 TGGGCTTACC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
25 28 0.61
26 2 0.04
27 16 0.35
ACGTcount: A:0.70, C:0.04, G:0.06, T:0.21
Consensus pattern (25 bp):
AAAATAAATACATAAAATATAAAAG
Found at i:21027261 original size:12 final size:12
Alignment explanation
Indices: 21027235--21027291 Score: 51
Period size: 12 Copynumber: 4.4 Consensus size: 12
21027225 GATATAAAGG
*
21027235 AAAATATATACAT
1 AAAATATA-AAAT
21027248 AAAATATAAAAT
1 AAAATATAAAAT
*
21027260 AAAATAAAAAGAAT
1 AAAAT-ATAA-AAT
*
21027274 AAAAATATAAAAC
1 -AAAATATAAAAT
21027287 AAAAT
1 AAAAT
21027292 TGGGCTTACC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
12 13 0.35
13 13 0.35
14 6 0.16
15 5 0.14
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.21
Consensus pattern (12 bp):
AAAATATAAAAT
Found at i:21027290 original size:21 final size:21
Alignment explanation
Indices: 21027250--21027290 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
21027240 ATATACATAA
21027250 AATATAAAATAAAATAAAAAG
1 AATATAAAATAAAATAAAAAG
* *
21027271 AATAAAAATATAAAACAAAA
1 AATATAAA-ATAAAATAAAA
21027291 TTGGGCTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (21 bp):
AATATAAAATAAAATAAAAAG
Found at i:21027467 original size:7 final size:8
Alignment explanation
Indices: 21027438--21027466 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
21027428 AACATTTTCA
21027438 TTTTTTGT
1 TTTTTTGT
21027446 TTTTTTGT
1 TTTTTTGT
21027454 TTTTTTGT
1 TTTTTTGT
21027462 TTTTT
1 TTTTT
21027467 GACCAAAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (8 bp):
TTTTTTGT
Found at i:21027535 original size:43 final size:42
Alignment explanation
Indices: 21027474--21027618 Score: 150
Period size: 43 Copynumber: 3.4 Consensus size: 42
21027464 TTTGACCAAA
* *
21027474 GCTCCTCTAAGCAGAGGCTCAACGACTTTGAGAAACATAAATG
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGAGAAA-ATAAATT
* *
21027517 GCTCCTCTAATCAGAGGCTCAACGACTTTAAAAAAAATAAATT
1 GCTCCTCTAATCAGAGGCTCAACGACTTT-GAGAAAATAAATT
* * * * * *
21027560 GCTTCTCTAAAT-AGAGGCACCACAACTTTGGGAAAGT-AATT
1 GCTCCTCT-AATCAGAGGCTCAACGACTTTGAGAAAATAAATT
*
21027601 GCTCCTCTAAACAGAGGC
1 GCTCCTCTAATCAGAGGC
21027619 CTCTAAATAG
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
40 2 0.02
41 17 0.20
42 4 0.05
43 55 0.65
44 7 0.08
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAATCAGAGGCTCAACGACTTTGAGAAAATAAATT
Found at i:21027656 original size:55 final size:55
Alignment explanation
Indices: 21027564--21027673 Score: 186
Period size: 55 Copynumber: 2.0 Consensus size: 55
21027554 TAAATTGCTT
*
21027564 CTCTAAATAGAGGCACCACAACTTTGGGAAAGTAATTGCTCCTCTAAACAGAGGC
1 CTCTAAATAGAGGCACCACAACTTTGGAAAAGTAATTGCTCCTCTAAACAGAGGC
*
21027619 CTCTAAATAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGC
1 CTCTAAATAGAGGCACCACAACTTTGGAAAAGT-AATTGCTCCTCTAAACAGAGGC
21027674 ACCAAGACTT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
54 6 0.12
55 46 0.88
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (55 bp):
CTCTAAATAGAGGCACCACAACTTTGGAAAAGTAATTGCTCCTCTAAACAGAGGC
Found at i:21027745 original size:42 final size:41
Alignment explanation
Indices: 21027618--21027779 Score: 272
Period size: 41 Copynumber: 3.9 Consensus size: 41
21027608 TAAACAGAGG
*
21027618 CCTCTAAATAGAGGCACCACGACTTTGAAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCT
*
21027659 CCTCTAAACAGAGGCACCAAGACTTTGAAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCT
21027700 CCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATTGCT
*
21027742 CCTCTAAACAGAGGCACCATGACTTTGGAAAA-TAAATT
1 CCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
21027780 ACTCTTTAAG
Statistics
Matches: 115, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
41 71 0.62
42 43 0.37
43 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (41 bp):
CCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCT
Found at i:21027757 original size:83 final size:82
Alignment explanation
Indices: 21027618--21027779 Score: 281
Period size: 83 Copynumber: 2.0 Consensus size: 82
21027608 TAAACAGAGG
*
21027618 CCTCTAAATAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAAGACT
1 CCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAAGACT
21027683 TT-GAAAAGTAAATTGCT
66 TTGGAAAA-TAAATTGCT
*
21027700 CCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGAC
1 CCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAGGCACCAAGAC
21027765 TTTGGAAAATAAATT
65 TTTGGAAAATAAATT
21027780 ACTCTTTAAG
Statistics
Matches: 76, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
82 26 0.34
83 45 0.59
84 5 0.07
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (82 bp):
CCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAAGACT
TTGGAAAATAAATTGCT
Found at i:21028041 original size:14 final size:14
Alignment explanation
Indices: 21028019--21028048 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
21028009 TTTTGAGAGT
*
21028019 AATGTATGCTATGC
1 AATGCATGCTATGC
21028033 AATGCATGCTATGC
1 AATGCATGCTATGC
21028047 AA
1 AA
21028049 ATATTGGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (14 bp):
AATGCATGCTATGC
Found at i:21029042 original size:7 final size:7
Alignment explanation
Indices: 21029019--21029108 Score: 50
Period size: 7 Copynumber: 13.1 Consensus size: 7
21029009 TCTTCTTTTT
21029019 TTTTTCA
1 TTTTTCA
21029026 TTTTCCTCA
1 TTTT--TCA
21029035 TTTTTCA
1 TTTTTCA
21029042 TTTTTCA
1 TTTTTCA
*
21029049 TTCTTC-
1 TTTTTCA
21029055 TGTTTT--
1 T-TTTTCA
21029061 TTTTTC-
1 TTTTTCA
*
21029067 TTTTT-T
1 TTTTTCA
21029073 TTTCATTCA
1 TTT--TTCA
*
21029082 TCTTT--
1 TTTTTCA
21029087 TTTTTCA
1 TTTTTCA
*
21029094 TTTCTCA
1 TTTTTCA
21029101 TTTTTCA
1 TTTTTCA
21029108 T
1 T
21029109 CCATTGTTGA
Statistics
Matches: 66, Mismatches: 7, Indels: 20
0.71 0.08 0.22
Matches are distributed among these distances:
5 8 0.12
6 10 0.15
7 37 0.56
8 2 0.03
9 9 0.14
ACGTcount: A:0.10, C:0.18, G:0.01, T:0.71
Consensus pattern (7 bp):
TTTTTCA
Found at i:21029064 original size:26 final size:27
Alignment explanation
Indices: 21029035--21029102 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 27
21029025 ATTTTCCTCA
*
21029035 TTTTTCATTTTTCATTC-TTC-TGTTTT
1 TTTTTCATTTTTCATTCATTCAT-CTTT
**
21029061 TTTTTC-TTTTTTTTTCATTCATCTTT
1 TTTTTCATTTTTCATTCATTCATCTTT
*
21029087 TTTTTCATTTCTCATT
1 TTTTTCATTTTTCATT
21029103 TTTCATCCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
25 8 0.24
26 18 0.55
27 7 0.21
ACGTcount: A:0.09, C:0.16, G:0.01, T:0.74
Consensus pattern (27 bp):
TTTTTCATTTTTCATTCATTCATCTTT
Found at i:21029105 original size:17 final size:16
Alignment explanation
Indices: 21029042--21029095 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
21029032 TCATTTTTCA
*
21029042 TTTTTCATTCTTCTGTT
1 TTTTTCATTCATCT-TT
21029059 TTTTT--TTC-T-TTT
1 TTTTTCATTCATCTTT
21029071 TTTTTCATTCATCTTT
1 TTTTTCATTCATCTTT
21029087 TTTTTCATT
1 TTTTTCATT
21029096 TCTCATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
12 7 0.21
13 1 0.03
14 4 0.12
15 4 0.12
16 12 0.36
17 5 0.15
ACGTcount: A:0.07, C:0.15, G:0.02, T:0.76
Consensus pattern (16 bp):
TTTTTCATTCATCTTT
Found at i:21033060 original size:25 final size:26
Alignment explanation
Indices: 21033032--21033122 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 26
21033022 TTATGCAAGG
21033032 AAAATTGATACTTTCAACTTTTTTCA
1 AAAATTGATACTTTCAACTTTTTTCA
* *
21033058 AAAAAT-ATTCTTTCGAAACTTTAATTTCGAGA
1 AAAATTGATACTTTC--AACTTT--TTTC---A
21033090 AAAATTGATACTTTCAACTTTTTCTCA
1 AAAATTGATACTTTCAACTTTTT-TCA
21033117 AAAATT
1 AAAATT
21033123 TATTTTTTTG
Statistics
Matches: 52, Mismatches: 4, Indels: 17
0.71 0.05 0.23
Matches are distributed among these distances:
25 7 0.13
26 5 0.10
27 13 0.25
29 6 0.12
30 2 0.04
31 6 0.12
32 6 0.12
33 7 0.13
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.42
Consensus pattern (26 bp):
AAAATTGATACTTTCAACTTTTTTCA
Found at i:21033095 original size:58 final size:58
Alignment explanation
Indices: 21033032--21033542 Score: 625
Period size: 59 Copynumber: 8.7 Consensus size: 58
21033022 TTATGCAAGG
* * * * **
21033032 AAAATTGATACTTTCAACTTTTTTCAAAAAATATTCTTTCGAAACTTTAATTTCGAGA
1 AAAATTGATACTTTCAACTTTTTTCAAAAAATATTTTTTTGAAAATTTATTTTTAAGA
* *
21033090 AAAATTGATACTTTCAACTTTTTCTCAAAAATTTATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTT-TCAAAAA-ATATTTTTTTGAAAATTTATTTTTAAGA
** *
21033150 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTTTCAAAAAATATTTTTTTGAAAATTTATTTTTAAGA
* * * * *
21033208 AAAATTGATACTTTCAA-TTTTTTCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTTT-CAAAAAATATTTTTTTGAAA-ATTTATTTTTAAGA
**
21033267 AAAATTGATACTTTCAACTTTTCTTCAAAAGTTGATTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTT-TTCAAAAAAT-ATTTTTTTGAAAATTTATTTTTAAGA
* **
21033327 AAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTGAACTTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTT-TTCAAAAAATA-TTTTTTTGAAAATTTATTTTTAAGA
* * *
21033386 AAAATTGATACTTTCAACTTTTTCTC-AAAAATATTTTTTGGAAACTTTGATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTT-TCAAAAAATATTTTTTTGAAAATTT-ATTTTTAAGA
* ** *
21033445 AAAATTGATACTTTCAACTTTTCCTCAAAACCT-TTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTT-TTCAAAAAATATTTTTTTGAAAATTTATTTTTAAGA
* *
21033503 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTTTCAAAAAATATTTTTTT
21033543 TTATTTAAAG
Statistics
Matches: 392, Mismatches: 48, Indels: 26
0.84 0.10 0.06
Matches are distributed among these distances:
57 9 0.02
58 135 0.34
59 144 0.37
60 91 0.23
61 13 0.03
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTTTCAAAAAATATTTTTTTGAAAATTTATTTTTAAGA
Found at i:21033152 original size:17 final size:16
Alignment explanation
Indices: 21033117--21033155 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
21033107 CTTTTTCTCA
**
21033117 AAAATTTATTTTTTTG
1 AAAATTTATTTTTAGG
21033133 AAAATTTATTTTTAAGG
1 AAAATTTATTTTT-AGG
21033150 AAAATT
1 AAAATT
21033156 GATACTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (16 bp):
AAAATTTATTTTTAGG
Found at i:21033159 original size:118 final size:116
Alignment explanation
Indices: 21033028--21033542 Score: 692
Period size: 118 Copynumber: 4.4 Consensus size: 116
21033018 GTTTTTATGC
* * * * *
21033028 AAGGAAAATTGATACTTTCAACTTTTTTCAAAAAATATTCTTTCGAAACTTTAATTTCGAGAAAA
1 AAGGAAAATTGATACTTTCAACTTTTTTCAAAAAATATTTTTTTGAAAATTTATTTTCAAGAAAA
*
21033093 ATTGATACTTTCAACTTTTTCTCAAAAATTTATTTTTTTGAAAATTTATTTTT
66 ATTGATACTTTCAACTTTTCCTCAAAAA-TT-TTTTTTTGAAAATTTATTTTT
** * *
21033146 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGAAAA
1 AAGGAAAATTGATACTTTCAACTTTTTTCAAAAAATATTTTTTTGAAAATTTATTTTCAAGAAAA
* * * * *
21033211 ATTGATACTTTCAATTTTTTCC-CAAAAATATTTTTTGGAAACTTTTATTTTC
66 ATTGATACTTTCAA-CTTTTCCTCAAAAATTTTTTTTTGAAA-ATTTATTTTT
** *
21033263 AAGGAAAATTGATACTTTCAACTTTTCTTCAAAAGTTGATTTTTTTGAAAATTTATTTTTAAGAA
1 AAGGAAAATTGATACTTTCAACTTTT-TTCAAAAAAT-ATTTTTTTGAAAATTTATTTTCAAGAA
**
21033328 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAACTTTTATTTTT
64 AAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTTGAAAATTTATTTTT
* * *
21033382 AAGAAAAATTGATACTTTCAACTTTTTCTC-AAAAATATTTTTTGGAAACTTTGATTTTCAAGAA
1 AAGGAAAATTGATACTTTCAACTTTTT-TCAAAAAATATTTTTTTGAAAATTT-ATTTTCAAGAA
**
21033446 AAATTGATACTTTCAACTTTTCCTCAAAACCTTTTTTTTGAAAATTTATTTTT
64 AAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTTT
* *
21033499 AAGGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTT
1 AAGGAAAATTGATACTTTCAACTTTTTTCAAAAAATATTTTTTT
21033543 TTATTTAAAG
Statistics
Matches: 350, Mismatches: 38, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
116 11 0.03
117 108 0.31
118 131 0.37
119 91 0.26
120 9 0.03
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (116 bp):
AAGGAAAATTGATACTTTCAACTTTTTTCAAAAAATATTTTTTTGAAAATTTATTTTCAAGAAAA
ATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTTT
Found at i:21033260 original size:59 final size:58
Alignment explanation
Indices: 21033032--21033542 Score: 661
Period size: 58 Copynumber: 8.7 Consensus size: 58
21033022 TTATGCAAGG
* * * * * * **
21033032 AAAATTGATACTTTCAACTTTTTTCAAAAAATATTCTTTCGAAACTTTAATTTCGAGA
1 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
* *
21033090 AAAATTGATACTTTCAACTTTTTCTCAAAAATTTATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTTCCCAAAAA--TATTTTTTTGAAAATTTATTTTTAAGA
*
21033150 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
* * * * *
21033208 AAAATTGATACTTTCAATTTTTTCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAA-ATTTATTTTTAAGA
* *
21033267 AAAATTGATACTTTCAAC-TTTTCTTCAAAAGTTGATTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTTC-CCAAAA-AT-ATTTTTTTGAAAATTTATTTTTAAGA
**
21033327 AAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTTTTGAACTTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTTCC-CAAAAATA-TTTTTTTGAAAATTTATTTTTAAGA
* * * *
21033386 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGGAAACTTTGATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTT-ATTTTTAAGA
* *
21033445 AAAATTGATACTTTCAAC-TTTTCCTCAAAACCT-TTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTTCC-CAAAA-ATATTTTTTTGAAAATTTATTTTTAAGA
21033503 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTT
21033543 TTATTTAAAG
Statistics
Matches: 397, Mismatches: 42, Indels: 28
0.85 0.09 0.06
Matches are distributed among these distances:
57 1 0.00
58 156 0.39
59 134 0.34
60 95 0.24
61 11 0.03
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
Found at i:21033588 original size:30 final size:27
Alignment explanation
Indices: 21033552--21033636 Score: 73
Period size: 30 Copynumber: 2.9 Consensus size: 27
21033542 TTTATTTAAA
21033552 GAAAATAGAATAATAAAACAAAATAAAAGT
1 GAAAATA-AA-AATAAAA-AAAATAAAAGT
*
21033582 GAAAATAAAAAAATAAAAATAAAGAAAAGT
1 GAAAAT--AAAAATAAAAA-AAATAAAAGT
*
21033612 -AAAACAAAAATAAAAATAAAATAAA
1 GAAAATAAAAAT-AAAA-AAAATAAA
21033637 GATAAAAAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
27 6 0.13
28 10 0.21
29 6 0.13
30 22 0.47
31 2 0.04
32 1 0.02
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.14
Consensus pattern (27 bp):
GAAAATAAAAATAAAAAAAATAAAAGT
Found at i:21033591 original size:5 final size:5
Alignment explanation
Indices: 21033563--21033643 Score: 51
Period size: 5 Copynumber: 15.4 Consensus size: 5
21033553 AAAATAGAAT
*
21033563 AATAA AACAA AATAA AAGTGAA AAT-A AA-AA AATAAA AATAA AGA-AA
1 AATAA AATAA AATAA AA-T-AA AATAA AATAA AAT-AA AATAA A-ATAA
* *
21033609 AGTAA AACAAA AATAAA AATAA AATAA AGATAA AA
1 AATAA AA-TAA AAT-AA AATAA AATAA A-ATAA AA
21033644 AGAATATTAA
Statistics
Matches: 60, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
4 6 0.10
5 28 0.47
6 22 0.37
7 4 0.07
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (5 bp):
AATAA
Found at i:21033599 original size:6 final size:6
Alignment explanation
Indices: 21033571--21033644 Score: 51
Period size: 6 Copynumber: 11.7 Consensus size: 6
21033561 ATAATAAAAC
* * * *
21033571 AAAATA AAAGTGA AAATAAA AAAATA AAAATA AAGAAAA GTAAAACA AAAATA
1 AAAATA AAAAT-A AAA-ATA AAAATA AAAATA AA-AATA --AAAATA AAAATA
*
21033624 AAAAT- AAAATA AAGATA AAAA
1 AAAATA AAAATA AAAATA AAAA
21033645 GAATATTAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
5 5 0.09
6 32 0.60
7 11 0.21
8 3 0.06
9 2 0.04
ACGTcount: A:0.78, C:0.01, G:0.07, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:21033637 original size:27 final size:28
Alignment explanation
Indices: 21033590--21033643 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
21033580 GTGAAAATAA
21033590 AAAAATAAAAATAAAGAAAAG-TAAAAC
1 AAAAATAAAAATAAAGAAAAGATAAAAC
21033617 AAAAATAAAAATAAA-ATAAAGATAAAA
1 AAAAATAAAAATAAAGA-AAAGATAAAA
21033644 AGAATATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 1 0.04
27 19 0.76
28 5 0.20
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAAGAAAAGATAAAAC
Found at i:21033641 original size:11 final size:10
Alignment explanation
Indices: 21033563--21033643 Score: 51
Period size: 11 Copynumber: 7.7 Consensus size: 10
21033553 AAAATAGAAT
*
21033563 AATAAAACAA
1 AATAAAATAA
21033573 AATAAAAGTGAA
1 AATAAAA-T-AA
21033585 AAT-AAA-AA
1 AATAAAATAA
21033593 AATAAAAATAA
1 AAT-AAAATAA
*
21033604 AGA-AAAGTAA
1 A-ATAAAATAA
*
21033614 AACAAAAATAAA
1 AA-TAAAAT-AA
21033626 AATAAAATAA
1 AATAAAATAA
21033636 AGATAAAA
1 A-ATAAAA
21033644 AGAATATTAA
Statistics
Matches: 57, Mismatches: 4, Indels: 19
0.71 0.05 0.24
Matches are distributed among these distances:
8 5 0.09
9 1 0.02
10 20 0.35
11 21 0.37
12 10 0.18
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (10 bp):
AATAAAATAA
Found at i:21033643 original size:22 final size:22
Alignment explanation
Indices: 21033553--21033724 Score: 72
Period size: 22 Copynumber: 7.7 Consensus size: 22
21033543 TTATTTAAAG
*
21033553 AAAATAGAATAATAAAACAAA-AT
1 AAAATA-AA-AATAAAATAAACAT
* *
21033576 AAAAGTGAAAATAAAA-AAATA-
1 AAAA-TAAAAATAAAATAAACAT
* *
21033597 AAAATAAAGA-AAAGTAAAACA-
1 AAAATAAAAATAAAAT-AAACAT
*
21033618 AAAATAAAAATAAAATAAAGAT
1 AAAATAAAAATAAAATAAACAT
* * *
21033640 AAAA-AGAATATTAAATAAACCT
1 AAAATA-AAAATAAAATAAACAT
** * *
21033662 AATCTAATAAATAAAAATAAATAA
1 AAAATAA-AAAT-AAAATAAACAT
*
21033686 ATAAATAAAAAT-AAATAAACAA
1 A-AAATAAAAATAAAATAAACAT
21033708 ATAAATAAATAA-AAAAT
1 A-AAATAAA-AATAAAAT
21033725 CCTGGAGCGG
Statistics
Matches: 114, Mismatches: 22, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
19 3 0.03
20 4 0.04
21 25 0.22
22 49 0.43
23 16 0.14
24 13 0.11
25 4 0.04
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (22 bp):
AAAATAAAAATAAAATAAACAT
Found at i:21033674 original size:4 final size:4
Alignment explanation
Indices: 21033667--21033724 Score: 72
Period size: 4 Copynumber: 15.8 Consensus size: 4
21033657 AACCTAATCT
*
21033667 AATA AAT- AA-A AATA AATA AATA AAT- AA-A AATA AATA AACA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
21033711 AATA AATA AA-A AAT
1 AATA AATA AATA AAT
21033725 CCTGGAGCGG
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
3 11 0.23
4 36 0.77
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:21033688 original size:18 final size:18
Alignment explanation
Indices: 21033667--21033724 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
21033657 AACCTAATCT
21033667 AATAAATAAAAATAAATA
1 AATAAATAAAAATAAATA
21033685 AATAAATAAAAATAAATA
1 AATAAATAAAAATAAATA
*
21033703 AACAAAT--AAATAAATA
1 AATAAATAAAAATAAATA
21033719 AA-AAAT
1 AATAAAT
21033725 CCTGGAGCGG
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
15 4 0.10
16 11 0.28
18 24 0.62
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.21
Consensus pattern (18 bp):
AATAAATAAAAATAAATA
Found at i:21034797 original size:11 final size:11
Alignment explanation
Indices: 21034776--21034805 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
21034766 AAACATATAC
21034776 ATAAAATATAAA
1 ATAAAA-ATAAA
21034788 ATAAAAATAAA
1 ATAAAAATAAA
21034799 ATAAAAA
1 ATAAAAA
21034806 GAATAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (11 bp):
ATAAAAATAAA
Found at i:21036848 original size:15 final size:16
Alignment explanation
Indices: 21036821--21036851 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
21036811 AATATTAATC
21036821 ATAATTAATTAATAAA
1 ATAATTAATTAATAAA
21036837 ATAATT-ATTAATAAA
1 ATAATTAATTAATAAA
21036852 CTCATTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATAATTAATTAATAAA
Found at i:21036955 original size:2 final size:2
Alignment explanation
Indices: 21036950--21036993 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
21036940 TCCCCCCTTT
21036950 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
21036992 TC
1 TC
21036994 ATCTTCTTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:21037949 original size:27 final size:27
Alignment explanation
Indices: 21037919--21037977 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
21037909 ATAAAAGTGG
**
21037919 TTTTAGTTTTAATATTTAAATTAATCC
1 TTTTAGTTTTAATATTTAAAAAAATCC
* * *
21037946 TTTTATTTTTTATTTTTAAAAAAATCC
1 TTTTAGTTTTAATATTTAAAAAAATCC
21037973 TTTTA
1 TTTTA
21037978 AAATCTTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (27 bp):
TTTTAGTTTTAATATTTAAAAAAATCC
Found at i:21039703 original size:29 final size:29
Alignment explanation
Indices: 21039666--21039722 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
21039656 TTCCCTTCAC
* *
21039666 TTCTCCTTCTTCT-TCTTTTTTTTTTCCCT
1 TTCTCCTTC-TCTATCTCTTTTCTTTCCCT
*
21039695 TTCTTCTTCTCTATCTCTTTTCTTTCCC
1 TTCTCCTTCTCTATCTCTTTTCTTTCCC
21039723 AACCAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 3 0.12
29 21 0.88
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (29 bp):
TTCTCCTTCTCTATCTCTTTTCTTTCCCT
Found at i:21040525 original size:8 final size:8
Alignment explanation
Indices: 21040512--21040537 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
21040502 CTTTCTTTTT
21040512 TTTTGTAA
1 TTTTGTAA
21040520 TTTTGTAA
1 TTTTGTAA
21040528 TTTTGTAA
1 TTTTGTAA
21040536 TT
1 TT
21040538 AATTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (8 bp):
TTTTGTAA
Found at i:21040981 original size:18 final size:18
Alignment explanation
Indices: 21040960--21041003 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
21040950 GGATGTTCTT
21040960 ATTTTTTTA-TTTTTTTA
1 ATTTTTTTATTTTTTTTA
**
21040977 GATTTTTGGATTTTTTTTA
1 -ATTTTTTTATTTTTTTTA
21040996 ATTTTTTT
1 ATTTTTTT
21041004 TAAAAATCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.77
Consensus pattern (18 bp):
ATTTTTTTATTTTTTTTA
Found at i:21040989 original size:26 final size:26
Alignment explanation
Indices: 21040918--21041003 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
21040908 AAACTTTTCA
*
21040918 ATTTTTTTGGAATTTTGG--TTTTTT
1 ATTTTTTTGGATTTTTGGATTTTTTT
*
21040942 CTTTTTTTGGATGTTCTT--ATTTTTTT
1 ATTTTTTTGGAT-TT-TTGGATTTTTTT
*
21040968 ATTTTTTTAGATTTTTGGATTTTTTTT
1 ATTTTTTTGGATTTTTGGA-TTTTTTT
21040995 AATTTTTTT
1 -ATTTTTTT
21041004 TAAAAATCCT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
24 12 0.24
25 4 0.08
26 19 0.38
27 7 0.14
28 8 0.16
ACGTcount: A:0.13, C:0.02, G:0.12, T:0.73
Consensus pattern (26 bp):
ATTTTTTTGGATTTTTGGATTTTTTT
Found at i:21041757 original size:33 final size:33
Alignment explanation
Indices: 21041720--21041783 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
21041710 ATCATCATCC
*
21041720 AATGATTTTGAAAAAACTCTAATATCACCACTA
1 AATGATTTTGAAAAAACTCGAATATCACCACTA
*
21041753 AATGATTTTGAAAAAGCTCGAATATCACCAC
1 AATGATTTTGAAAAAACTCGAATATCACCAC
21041784 CGAGTGAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.28
Consensus pattern (33 bp):
AATGATTTTGAAAAAACTCGAATATCACCACTA
Found at i:21042189 original size:28 final size:28
Alignment explanation
Indices: 21042135--21042190 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
21042125 AATGATTTTG
**
21042135 AAAAAGCTCAAATATCACCATTAAGTGA
1 AAAAAGCTCAAATATCACCACCAAGTGA
*
21042163 AAAAAGCTCAAATATCACCACCGAGTGA
1 AAAAAGCTCAAATATCACCACCAAGTGA
21042191 GTTTTAATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.48, C:0.21, G:0.12, T:0.18
Consensus pattern (28 bp):
AAAAAGCTCAAATATCACCACCAAGTGA
Found at i:21042346 original size:400 final size:396
Alignment explanation
Indices: 21041358--21042362 Score: 1033
Period size: 404 Copynumber: 2.5 Consensus size: 396
21041348 TGAGTGATTT
* ** *
21041358 TGAAAAAA-CTCAAATATTACCATTGAGTAAGTTTTAATGACAAC-TCACATTGAGAAAATAAAA
1 TGAAAAAAGCTCAAATATCACCACCGAGTGAGTTTTAATGACAACTTC-CATTGAGAAAATAAAA
* * * * * *
21041421 TTTAGACTTTAATACTCAAATATCACCACTGAGTACTTTGAAAACAAC-TCGAATATCACTACT-
65 TTCAGACTTTAATACTCAGATATCACCAC-GAGTATTTTGAAAA-GACTTAG-ATATCACTATTG
* ** *
21041484 AATAATTGTTTAATGAAAACTCCCA-CTGAAAATATTTTAATGATATTCAAACATGAATACTTGG
127 AA-AATTGTTTAATGAAAACTCACACCAAAAAAT-TTTTAATGATATTCAAACATGAATA-TTCG
** * * * * *
21041548 AAT-TCACCACTTAGTGATTTTGAAAAAAACTCGGATATCACTACTAAAAAATGAGTTGTCTTTG
189 AATATCACCACCAAGTGATTTTGAAAAAAACTCGGATATCACCACTAAAAAATGAGATATATTCG
* * * * ***
21041612 GATATACTACTGAAGAGAACTTGAATATCACCACCAAGAAAATTTTATAAAAGCTTTTACTGAAA
254 AATATACCACTGAAGAAAACTTGAATATCACCACCAAGAAAATTTTACAAAAGCTCCCACTGAAA
* * * * ** * *
21041677 ATTTTAATAAAATTCATACATGTATACTTGGATATCATCATCCAATGATTTTGAAAAAACTCTAA
319 AATTTAATAAAATGCAGACATGAATACTTAAATATCACCATCCAATGATTTTGAAAAAACTCAAA
21041742 TATCACCACTAAA
384 TATCACCACTAAA
* * * *
21041755 TGATTTTGAAAAAGCTCGAATATCACCACCGAGTGAGTTGTAAAGACAACTTCCAACT-AGAAAA
1 TGA-----AAAAAGCTCAAATATCACCACCGAGTGAGTTTTAATGACAACTTCC-ATTGAGAAAA
* * * * * * *
21041819 TAAAATCCAGA-TTGTAATCCTCGGATATCACCACCAAATAGTTTTGAAAAGAGTTTGGATATCA
60 TAAAATTCAGACTT-TAATACTCAGATATCACCA-CGAGTA-TTTTGAAAAGA-CTTAGATATCA
* * ** * *
21041883 CCATCGAAAATTGTTTAACAAAAACTAACATCGAAAAAA-TTTTAATGATATTCAAACATGAATA
121 CTATTGAAAATTGTTTAATGAAAACTCACA-CCAAAAAATTTTTAATGATATTCAAACATGAATA
* * * *
21041947 TTTGAATATCACCACCAAGTGATTTTGAAAAAAGCTCTGATATCACCA-TCGAAAAATGAGATAT
185 TTCGAATATCACCACCAAGTGATTTTGAAAAAAACTCGGATATCACCACT-AAAAAATGAGATAT
* ***
21042011 ATTCGAATATACCACTGAAGAAAACTTGGATATCACCATTGAGAAAATTTTACAAAAGCTCCCA-
249 ATTCGAATATACCACTGAAGAAAACTTGAATATCACCACCAAGAAAATTTTACAAAAGCTCCCAC
* * **
21042075 TGATAAAAATTTAATGAAATGCAGATATGAATACTTAAATATCACCATTGAATGATTTTGAAAAA
314 TG--AAAAATTTAATAAAATGCAGACATGAATACTTAAATATCACCATCCAATGATTTTGAAAAA
* * *
21042140 GCTCAAATATCACCATTAAG
377 ACTCAAATATCACCACTAAA
*
21042160 TGAAAAAAGCTCAAATATCACCACCGAGTGAGTTTTAATGACAACTTCCATTGAGAAAATGAAAT
1 TGAAAAAAGCTCAAATATCACCACCGAGTGAGTTTTAATGACAACTTCCATTGAGAAAATAAAAT
* *
21042225 TCAGACTTTAATACTTAGATATCACCATCGAGTGATTTTAAAAAGGACTTAGATATCACTATTGA
66 TCAGACTTTAATACTCAGATATCACCA-CGAGT-ATTTTGAAAA-GACTTAGATATCACTATTGA
* * * *
21042290 AAATTGTTTAATGAAAACTCTCACCAAAAAATTTTTAATAATATTCAAATATGAATACTCGAATA
128 AAATTGTTTAATGAAAACTCACACCAAAAAATTTTTAATGATATTCAAACATGAATATTCGAATA
*
21042355 TCATCACC
193 TCACCACC
21042363 GACTAAGTTT
Statistics
Matches: 490, Mismatches: 93, Indels: 47
0.78 0.15 0.07
Matches are distributed among these distances:
397 3 0.01
399 9 0.02
400 154 0.31
401 5 0.01
402 7 0.01
403 74 0.15
404 161 0.33
405 73 0.15
406 4 0.01
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (396 bp):
TGAAAAAAGCTCAAATATCACCACCGAGTGAGTTTTAATGACAACTTCCATTGAGAAAATAAAAT
TCAGACTTTAATACTCAGATATCACCACGAGTATTTTGAAAAGACTTAGATATCACTATTGAAAA
TTGTTTAATGAAAACTCACACCAAAAAATTTTTAATGATATTCAAACATGAATATTCGAATATCA
CCACCAAGTGATTTTGAAAAAAACTCGGATATCACCACTAAAAAATGAGATATATTCGAATATAC
CACTGAAGAAAACTTGAATATCACCACCAAGAAAATTTTACAAAAGCTCCCACTGAAAAATTTAA
TAAAATGCAGACATGAATACTTAAATATCACCATCCAATGATTTTGAAAAAACTCAAATATCACC
ACTAAA
Found at i:21042589 original size:107 final size:107
Alignment explanation
Indices: 21042396--21042594 Score: 267
Period size: 107 Copynumber: 1.9 Consensus size: 107
21042386 CCCAGAAACA
* * *
21042396 TTTTAACAATATTCAAATACAAATACTCGAATATCACCACCGAGTGATTTTGAAAAAGCTTGAAT
1 TTTTAACAATATTCAAACACAAACACTCGAATATCACCACCGAGTGATTTTGAAAAAGCTCGAAT
*
21042461 ATCAACATCGCATAAGTTTTAATGAAAACTCCATCGAAAAAT
66 ATCAACATCGCAGAAGTTTTAATGAAAACTCCATCGAAAAAT
* ** * *
21042503 TTTTAATAATATTCAAACATGAACACTTGAATATCACCACCTAGTGATTTTGGAAAAAGCTCGAA
1 TTTTAACAATATTCAAACACAAACACTCGAATATCACCACCGAGTGATTTT-GAAAAAGCTCGAA
* *
21042568 TATCACCATTG-AGAA-TGTTTAATGAAA
65 TATCAACATCGCAGAAGT-TTTAATGAAA
21042595 TTCTAATATC
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
106 1 0.01
107 57 0.72
108 21 0.27
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.30
Consensus pattern (107 bp):
TTTTAACAATATTCAAACACAAACACTCGAATATCACCACCGAGTGATTTTGAAAAAGCTCGAAT
ATCAACATCGCAGAAGTTTTAATGAAAACTCCATCGAAAAAT
Found at i:21045081 original size:8 final size:8
Alignment explanation
Indices: 21045068--21045103 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
21045058 GTTACAATCA
21045068 TTTTTATT
1 TTTTTATT
21045076 TTTTTATTT
1 TTTTTA-TT
*
21045085 TTTTTATG
1 TTTTTATT
21045093 TTTTTATT
1 TTTTTATT
21045101 TTT
1 TTT
21045104 CTTTTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (8 bp):
TTTTTATT
Found at i:21045114 original size:17 final size:17
Alignment explanation
Indices: 21045068--21045103 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
21045058 GTTACAATCA
*
21045068 TTTTTATTTTTTTATTT
1 TTTTTATGTTTTTATTT
21045085 TTTTTATGTTTTTATTT
1 TTTTTATGTTTTTATTT
21045102 TT
1 TT
21045104 CTTTTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (17 bp):
TTTTTATGTTTTTATTT
Found at i:21048010 original size:22 final size:22
Alignment explanation
Indices: 21047957--21048010 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
21047947 AAACACAATG
*
21047957 ACATAC-TATATGAGTAATGAA
1 ACATACTTATAAGAGTAATGAA
* *
21047978 ATATA-TGTATAAGATTAATGAA
1 ACATACT-TATAAGAGTAATGAA
21048000 ACATACTTATA
1 ACATACTTATA
21048011 TAAAATACAC
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
21 4 0.15
22 21 0.81
23 1 0.04
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.33
Consensus pattern (22 bp):
ACATACTTATAAGAGTAATGAA
Found at i:21051160 original size:17 final size:17
Alignment explanation
Indices: 21051125--21051171 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
21051115 AAAACTTTTT
*
21051125 TTCTTTATT-CTTCCTTC
1 TTCTTTTTTCCTT-CTTC
21051142 TT-TTTTTCTCCTTCTTC
1 TTCTTTTT-TCCTTCTTC
21051159 TTCTTTTTTCCTT
1 TTCTTTTTTCCTT
21051172 ATTCCAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 4 0.15
17 14 0.54
18 8 0.31
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (17 bp):
TTCTTTTTTCCTTCTTC
Found at i:21051317 original size:12 final size:11
Alignment explanation
Indices: 21051302--21051358 Score: 53
Period size: 11 Copynumber: 5.0 Consensus size: 11
21051292 TTCCCCCATT
21051302 TTTTCTTTCTTC
1 TTTTCTTT-TTC
*
21051314 TTTTCTTTTTA
1 TTTTCTTTTTC
**
21051325 TCCTCTTTTT-
1 TTTTCTTTTTC
21051335 TTTTCTCTTTCTC
1 TTTTCT-TTT-TC
21051348 TTTTCTTTTTC
1 TTTTCTTTTTC
21051359 AGCCTACAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
10 4 0.11
11 15 0.41
12 12 0.32
13 6 0.16
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:21051333 original size:16 final size:17
Alignment explanation
Indices: 21051312--21051357 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 17
21051302 TTTTCTTTCT
21051312 TCTTTTCTTTTTATC-C
1 TCTTTTCTTTTTATCTC
*
21051328 TCTTTT-TTTTTCTCTTTC
1 TCTTTTCTTTTTATC--TC
21051346 TCTTTTCTTTTT
1 TCTTTTCTTTTT
21051358 CAGCCTACAG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 7 0.28
16 6 0.24
18 7 0.28
19 5 0.20
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (17 bp):
TCTTTTCTTTTTATCTC
Found at i:21055534 original size:24 final size:24
Alignment explanation
Indices: 21055482--21055534 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
21055472 TTCATTACTC
* *
21055482 CAAAAATTTAAAATTATTATCACA
1 CAAAAATTTAAAATTACTACCACA
* * *
21055506 TAAAAATTTTAAATTACTACCGCA
1 CAAAAATTTAAAATTACTACCACA
21055530 CAAAA
1 CAAAA
21055535 TAAAATAATT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.30
Consensus pattern (24 bp):
CAAAAATTTAAAATTACTACCACA
Found at i:21057488 original size:6 final size:6
Alignment explanation
Indices: 21057455--21057496 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
21057445 CAAGTTGAAT
*
21057455 TTTAAA TTTTAAA TTTTAAA -TCAAA TTTAAA TTTAAA TTTAA
1 TTTAAA -TTTAAA -TTTAAA TTTAAA TTTAAA TTTAAA TTTAA
21057497 TATTGTATCG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
5 4 0.12
6 15 0.47
7 13 0.41
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:21059258 original size:84 final size:84
Alignment explanation
Indices: 21059140--21059368 Score: 431
Period size: 84 Copynumber: 2.7 Consensus size: 84
21059130 GCAATGTACA
*
21059140 ACAAAACTAAGACATTTACAAGGAAAAGATGCATTGGTTATGACAAATATAAGGCATGTTAAAAG
1 ACAAAACTAAGACATTTACAAGGAAAAGATGCATTTGTTATGACAAATATAAGGCATGTTAAAAG
21059205 ACATTAAAGATACGCGCAT
66 ACATTAAAGATACGCGCAT
*
21059224 ACAAAACTAAGACATTTACAAGGAAAAGATGCATTTGCTATGACAAATATAAGGCATGTTAAAAG
1 ACAAAACTAAGACATTTACAAGGAAAAGATGCATTTGTTATGACAAATATAAGGCATGTTAAAAG
21059289 ACATTAAAGATACGCGCAT
66 ACATTAAAGATACGCGCAT
*
21059308 ACAAAACTAAGACATTTACAAGGGAAAGATGCATTTGTTATGACAAATATAAGGCATGTTA
1 ACAAAACTAAGACATTTACAAGGAAAAGATGCATTTGTTATGACAAATATAAGGCATGTTA
21059369 TTAACTAACC
Statistics
Matches: 141, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 141 1.00
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (84 bp):
ACAAAACTAAGACATTTACAAGGAAAAGATGCATTTGTTATGACAAATATAAGGCATGTTAAAAG
ACATTAAAGATACGCGCAT
Found at i:21062159 original size:32 final size:32
Alignment explanation
Indices: 21062120--21062183 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
21062110 ATTAAGGAAT
21062120 TAATAAGTATGAAACTGACCCTTTTCTGAGAA
1 TAATAAGTATGAAACTGACCCTTTTCTGAGAA
21062152 TAATAAGTATGAAACTGACCCTTTTCTGAGAA
1 TAATAAGTATGAAACTGACCCTTTTCTGAGAA
21062184 CTTTCAACCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (32 bp):
TAATAAGTATGAAACTGACCCTTTTCTGAGAA
Found at i:21077102 original size:93 final size:93
Alignment explanation
Indices: 21076938--21077120 Score: 312
Period size: 93 Copynumber: 2.0 Consensus size: 93
21076928 ATTCTATCTT
* * *
21076938 ATGGGCAAATCTGGTTCCCAAGCCAGACTTTGGCAAAAAATGACAAGGTTTTATCAAGGCTAGCA
1 ATGGCCAAATCTGGTTCCCAAGCCAGACTTTGGCAAAAAAAGACAAGGTTATATCAAGGCTAGCA
21077003 GCGGGCAAGTTGAAGGAATCCACATTGC
66 GCGGGCAAGTTGAAGGAATCCACATTGC
**
21077031 ATGGCCAAATCTGGTTCTGAAGCCAGACTTTGGCAAAAAAAGACAAGGTTATATCAAGGCTAGCA
1 ATGGCCAAATCTGGTTCCCAAGCCAGACTTTGGCAAAAAAAGACAAGGTTATATCAAGGCTAGCA
*
21077096 GTGGGCAAGTTGAAGGAATCCACAT
66 GCGGGCAAGTTGAAGGAATCCACAT
21077121 AGCAAGAGTA
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 84 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (93 bp):
ATGGCCAAATCTGGTTCCCAAGCCAGACTTTGGCAAAAAAAGACAAGGTTATATCAAGGCTAGCA
GCGGGCAAGTTGAAGGAATCCACATTGC
Done.