Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 127 of 130
Found at i:25867712 original size:2 final size:2
Alignment explanation
Indices: 25867705--25867744 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
25867695 CTCAATCTCC
25867705 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25867745 AAACGAAACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:25869433 original size:3 final size:3
Alignment explanation
Indices: 25869425--25869455 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
25869415 TAGTGAAAAG
25869425 GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA G
1 GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA G
25869456 AAGCTAACGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.68, T:0.00
Consensus pattern (3 bp):
GGA
Found at i:25870285 original size:16 final size:16
Alignment explanation
Indices: 25870264--25870294 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
25870254 AAACCCATAA
25870264 GTTCTAGAATTCTTAG
1 GTTCTAGAATTCTTAG
25870280 GTTCTAGAATTCTTA
1 GTTCTAGAATTCTTA
25870295 TTCAAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (16 bp):
GTTCTAGAATTCTTAG
Found at i:25871242 original size:16 final size:17
Alignment explanation
Indices: 25871221--25871284 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 17
25871211 TTTTAACATA
* *
25871221 AATTTTAGATTCGAA-T
1 AATTTTAAATTCAAATT
25871237 AATTTTAAATTCAAATT
1 AATTTTAAATTCAAATT
*
25871254 AA-TTTAAATT-ATGA-T
1 AATTTTAAATTCA-AATT
*
25871269 AATTTCAAATTCAAAT
1 AATTTTAAATTCAAAT
25871285 AATCTCAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
15 4 0.11
16 30 0.79
17 4 0.11
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (17 bp):
AATTTTAAATTCAAATT
Found at i:25871286 original size:16 final size:16
Alignment explanation
Indices: 25871229--25871295 Score: 66
Period size: 16 Copynumber: 4.2 Consensus size: 16
25871219 TAAATTTTAG
* *
25871229 ATTCGAATAATTTTAA
1 ATTCAAATAATTTCAA
25871245 ATTCAAATTAATTT-AA
1 ATTCAAA-TAATTTCAA
*
25871261 ATT-ATGATAATTTCAA
1 ATTCA-AATAATTTCAA
*
25871277 ATTCAAATAATCTCAA
1 ATTCAAATAATTTCAA
25871293 ATT
1 ATT
25871296 TAAGTTATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
15 7 0.16
16 29 0.67
17 7 0.16
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.42
Consensus pattern (16 bp):
ATTCAAATAATTTCAA
Found at i:25871295 original size:32 final size:32
Alignment explanation
Indices: 25871235--25871295 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
25871225 TTAGATTCGA
* *
25871235 ATAATTTTAAATTCAAATTAATTTAAATTATG
1 ATAATTTCAAATTCAAATTAATTCAAATTATG
25871267 ATAATTTCAAATTCAAA-TAATCTCAAATT
1 ATAATTTCAAATTCAAATTAAT-TCAAATT
25871296 TAAGTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.43
Consensus pattern (32 bp):
ATAATTTCAAATTCAAATTAATTCAAATTATG
Found at i:25886349 original size:13 final size:13
Alignment explanation
Indices: 25886320--25886390 Score: 72
Period size: 13 Copynumber: 5.5 Consensus size: 13
25886310 CATGTAAAAA
25886320 AAATTTT-AATTT
1 AAATTTTAAATTT
*
25886332 TAATTTTAAATTT
1 AAATTTTAAATTT
**
25886345 AAATTTGCAATTT
1 AAATTTTAAATTT
* *
25886358 ATTATTTAAAATTT
1 A-AATTTTAAATTT
*
25886372 AATTTTTAAATTT
1 AAATTTTAAATTT
25886385 AAATTT
1 AAATTT
25886391 AATTCGAAAT
Statistics
Matches: 46, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
12 6 0.13
13 30 0.65
14 10 0.22
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (13 bp):
AAATTTTAAATTT
Found at i:25886383 original size:27 final size:27
Alignment explanation
Indices: 25886334--25886385 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
25886324 TTTAATTTTA
* *
25886334 ATTTTAAATTTAAATTTGCAATTTATT
1 ATTTAAAATTTAAATTTGAAATTTATT
* *
25886361 ATTTAAAATTTAATTTTTAAATTTA
1 ATTTAAAATTTAAATTTGAAATTTA
25886386 AATTTAATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (27 bp):
ATTTAAAATTTAAATTTGAAATTTATT
Found at i:25886535 original size:29 final size:31
Alignment explanation
Indices: 25886498--25886577 Score: 89
Period size: 29 Copynumber: 2.7 Consensus size: 31
25886488 AATTCGAATT
25886498 AAAA-TTAA-TAAATATATAAATAAAATA-A
1 AAAATTTAATTAAATATATAAATAAAATATA
* * *
25886526 TAATTTTAATTAAA-ATAT-ATTAAAATATA
1 AAAATTTAATTAAATATATAAATAAAATATA
*
25886555 AAAATTTAATTAAATTTATAAAT
1 AAAATTTAATTAAATATATAAAT
25886578 TATTTAAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
28 10 0.25
29 21 0.52
30 7 0.17
31 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (31 bp):
AAAATTTAATTAAATATATAAATAAAATATA
Found at i:25886537 original size:33 final size:30
Alignment explanation
Indices: 25886500--25886568 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
25886490 TTCGAATTAA
*
25886500 AATTAATAAATATATAAATAAAATAATAATTTT
1 AATTAA-AAATATATAAA-AAAATAA-AAATTT
* *
25886533 AATT-AAAATATATTAAAATATAAAAATTT
1 AATTAAAAATATATAAAAAAATAAAAATTT
25886562 AATTAAA
1 AATTAAA
25886569 TTTATAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 9 0.28
30 8 0.25
31 10 0.31
32 1 0.03
33 4 0.12
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (30 bp):
AATTAAAAATATATAAAAAAATAAAAATTT
Found at i:25886569 original size:18 final size:20
Alignment explanation
Indices: 25886548--25886608 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 20
25886538 AAATATATTA
25886548 AAATATAAA-AATTT-AATT
1 AAATATAAATAATTTAAATT
*
25886566 AAATTTATAAATTATTTAAATT
1 AAA--TATAAATAATTTAAATT
25886588 AAATATTATAAT-ATTTAAATT
1 AAATA-TA-AATAATTTAAATT
25886609 CAATTTATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
18 3 0.08
20 8 0.22
21 15 0.42
22 10 0.28
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AAATATAAATAATTTAAATT
Found at i:25886584 original size:21 final size:20
Alignment explanation
Indices: 25886558--25886616 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
25886548 AAATATAAAA
25886558 ATTT-AATTAAATTTATAAATT
1 ATTTAAATTAAATTTAT-AA-T
25886579 ATTTAAATTAAATATTATAAT
1 ATTTAAATTAAAT-TTATAAT
*
25886600 ATTTAAATTCAATTTAT
1 ATTTAAATTAAATTTAT
25886617 TCAATAAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
20 4 0.11
21 17 0.49
22 10 0.29
23 4 0.11
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTAAATTAAATTTATAAT
Found at i:25887508 original size:13 final size:13
Alignment explanation
Indices: 25887490--25887515 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25887480 TATTGAATGA
25887490 AATTAATTTTTTT
1 AATTAATTTTTTT
25887503 AATTAATTTTTTT
1 AATTAATTTTTTT
25887516 TCATTTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
AATTAATTTTTTT
Found at i:25904124 original size:3 final size:3
Alignment explanation
Indices: 25904116--25904175 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
25904106 TTTATTGTGG
*
25904116 ATA ATA ATA ATC ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
25904164 ATA ATA ATA ATA
1 ATA ATA ATA ATA
25904176 TAAGGTCCAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:25909113 original size:2 final size:2
Alignment explanation
Indices: 25909106--25909133 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
25909096 TACGTATGCT
25909106 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
25909134 CTCCTTTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:25909655 original size:14 final size:14
Alignment explanation
Indices: 25909636--25909665 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
25909626 ACAAGCCTCA
25909636 TGGATCTTATTATG
1 TGGATCTTATTATG
25909650 TGGATCTTATTATG
1 TGGATCTTATTATG
25909664 TG
1 TG
25909666 TCAAGTGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.23, T:0.50
Consensus pattern (14 bp):
TGGATCTTATTATG
Found at i:25909983 original size:22 final size:22
Alignment explanation
Indices: 25909955--25909998 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
25909945 TTTTTTTGTT
* *
25909955 CTTAATTCTAGGGATATAAATA
1 CTTAATTCTAGAGATACAAATA
25909977 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
25909999 TAAATATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:25913655 original size:25 final size:26
Alignment explanation
Indices: 25913618--25913680 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
25913608 TTGAAAGGTT
*
25913618 TTGGCAATAAAGGCCT-AAATAGAA-
1 TTGGCAATGAAGGCCTAAAATAGAAG
25913642 TTCGGCAATGAAGGCCTAAAATAGAAG
1 TT-GGCAATGAAGGCCTAAAATAGAAG
*
25913669 TTAGCAATGAAG
1 TTGGCAATGAAG
25913681 TCTGAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 2 0.06
25 13 0.38
26 17 0.50
27 2 0.06
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.21
Consensus pattern (26 bp):
TTGGCAATGAAGGCCTAAAATAGAAG
Found at i:25921908 original size:2 final size:2
Alignment explanation
Indices: 25921901--25921929 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
25921891 TATCTGCTTC
25921901 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25921930 AGCTTTTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25924180 original size:56 final size:55
Alignment explanation
Indices: 25924006--25924184 Score: 168
Period size: 58 Copynumber: 3.2 Consensus size: 55
25923996 TTCATCAAGC
* * * * *
25924006 CCAACATAAAGCATACACAAATCACAAGATTATATAAGACGTTAAGATTTTAAAAG
1 CCAACACAAAGCACACACAGATCACAAGATAATAT-AGACGTTAAGATTCTAAAAG
* *
25924062 CCAACACAAA--ACACACAGATCACATA-ATCACAT-TAGATGTTAGGATTCTAAAAGTG
1 CCAACACAAAGCACACACAGATCACA-AGAT-A-ATATAGACGTTAAGATTCTAAAA--G
** * *
25924118 TTAACACAAAGCACACATAGATCACAGGATAATACTAGACGTTAAGATTCTAAAAG
1 CCAACACAAAGCACACACAGATCACAAGATAATA-TAGACGTTAAGATTCTAAAAG
25924174 CCAACACAAAG
1 CCAACACAAAG
25924185 TTCTAAAAGT
Statistics
Matches: 98, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
54 30 0.31
55 2 0.02
56 32 0.33
57 1 0.01
58 33 0.34
ACGTcount: A:0.47, C:0.20, G:0.12, T:0.21
Consensus pattern (55 bp):
CCAACACAAAGCACACACAGATCACAAGATAATATAGACGTTAAGATTCTAAAAG
Found at i:25924332 original size:56 final size:55
Alignment explanation
Indices: 25924208--25924315 Score: 139
Period size: 55 Copynumber: 1.9 Consensus size: 55
25924198 AATACAAATC
* *
25924208 ACACATAATACACACAA--ATCACAAGATCACACTAGATGTTAAATTCTAAAAGCCA
1 ACACA-AA-ACACACAAGGATCACAAGATCACACCAGACGTTAAATTCTAAAAGCCA
* *
25924263 ATACAAAACACACAAGGATCACAAGATCATACCAGACGTTAGAATTCTAAAAG
1 ACACAAAACACACAAGGATCACAAGATCACACCAGACGTTA-AATTCTAAAAG
25924316 TTAACATAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
53 8 0.17
54 2 0.04
55 25 0.54
56 11 0.24
ACGTcount: A:0.49, C:0.22, G:0.10, T:0.19
Consensus pattern (55 bp):
ACACAAAACACACAAGGATCACAAGATCACACCAGACGTTAAATTCTAAAAGCCA
Found at i:25924339 original size:56 final size:55
Alignment explanation
Indices: 25924208--25924500 Score: 165
Period size: 56 Copynumber: 5.0 Consensus size: 55
25924198 AATACAAATC
* * * *
25924208 ACACATAATACACACAAATCACAAGATCACACTAGATGTTAAATTCTAAAAGCCA
1 ACACAAAATACACACAGATCACAAGATCACACCAGACGTTAAATTCTAAAAGCCA
* * * **
25924263 ATACAAAACACACA-AGGATCACAAGATCATACCAGACGTTAGAATTCTAAAAGTTA
1 ACACAAAATACACACA-GATCACAAGATCACACCAGACGTTA-AATTCTAAAAGCCA
* * * * * * * **
25924319 ACATAAAATACACACAGATCATATGATCAAACTAAACATTAAGATTCTAAAAGTGTTA
1 ACACAAAATACACACAGATCACAAGATCACACCAGACGTTAA-ATTCTAAAA--GCCA
* * * *
25924377 ACACAAATCATATACATCACACATAAATCACAAGATCACACCAGACATTAAGATTCTAAAGGTAT
1 ACAC-AA--A-AT--A-CACAC--AGATCACAAGATCACACCAGACGTTAA-ATTCTAAAAG--C
25924442 CA
54 CA
* * * * * *
25924444 ACACCAAGTACACATAGATCACAGGATCACACTAGACGTTAAGATTCTAAAGGCCA
1 ACACAAAATACACACAGATCACAAGATCACACCAGACGTTAA-ATTCTAAAAGCCA
25924500 A
1 A
25924501 TAATACAAAG
Statistics
Matches: 186, Mismatches: 35, Indels: 33
0.73 0.14 0.13
Matches are distributed among these distances:
54 1 0.01
55 33 0.18
56 54 0.29
57 1 0.01
58 41 0.22
59 2 0.01
60 4 0.02
61 2 0.01
62 2 0.01
63 1 0.01
64 2 0.01
65 6 0.03
66 1 0.01
67 36 0.19
ACGTcount: A:0.47, C:0.22, G:0.10, T:0.21
Consensus pattern (55 bp):
ACACAAAATACACACAGATCACAAGATCACACCAGACGTTAAATTCTAAAAGCCA
Found at i:25924765 original size:75 final size:75
Alignment explanation
Indices: 25924545--25924771 Score: 269
Period size: 75 Copynumber: 3.0 Consensus size: 75
25924535 CAGATGTTAG
* * * * *
25924545 GATTCTAAATGTGGCTCTCATCGTGTAACATTTAGCTTATATCTGATTAGTGATCGCTCTAATAC
1 GATTCTAAAGGTGGCTCTCATCGTGTAACATTTAGCTTCTGTCCGACTAGTGATCGCTCTAATAC
* *
25924610 CATTTAT-AA
66 CATTTGTGGA
* * * * ** *
25924619 GGATTCTAAAGGTGACTCTCATCGTGTAACATTTAGC-TCATGTCCAACTAATAATCATTTTAAT
1 -GATTCTAAAGGTGGCTCTCATCGTGTAACATTTAGCTTC-TGTCCGACTAGTGATCGCTCTAAT
*
25924683 ACTATTTGTGGA
64 ACCATTTGTGGA
* *
25924695 GATTCTAAAGGTGGCTCTCATCATGTAACATTTAGCTTCTGTCCGACTAGTGACCGCTCTAATAC
1 GATTCTAAAGGTGGCTCTCATCGTGTAACATTTAGCTTCTGTCCGACTAGTGATCGCTCTAATAC
25924760 CATTTGTGGA
66 CATTTGTGGA
25924770 GA
1 GA
25924772 CTCATACCCA
Statistics
Matches: 124, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
74 1 0.01
75 120 0.97
76 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (75 bp):
GATTCTAAAGGTGGCTCTCATCGTGTAACATTTAGCTTCTGTCCGACTAGTGATCGCTCTAATAC
CATTTGTGGA
Found at i:25924936 original size:115 final size:115
Alignment explanation
Indices: 25924736--25924949 Score: 306
Period size: 115 Copynumber: 1.9 Consensus size: 115
25924726 TTAGCTTCTG
* *
25924736 TCCGACTAGTGACCGCTCTAATACCATTTGTGGAGACTCATACCCAACTTACAAGATGACGTCCT
1 TCCGACTAGTGACCGCTCTAATACCATTTGTGGAGACTCACACCCAACTTACAAGATAACGTCCT
*
25924801 CGTCAAGCCTAACATAAAACACATAG-AGATCACAGGGTATTTAGCTCTTA
66 CGTCAAGCCTAACACAAAACACAT-GTAGATCACAGGGTATTTAGCTCTTA
* * * *
25924851 TCCGATTAGTGACCGCTCTAATACTATTTGTGGAGACTCACACCCAACTTACAAGATAATGTTCT
1 TCCGACTAGTGACCGCTCTAATACCATTTGTGGAGACTCACACCCAACTTACAAGATAACGTCCT
* * *
25924916 TGTCAAG-TTCAACACGAAACACATGTAGATCACA
66 CGTCAAGCCT-AACACAAAACACATGTAGATCACA
25924950 TGATTATACC
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
114 2 0.02
115 85 0.98
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (115 bp):
TCCGACTAGTGACCGCTCTAATACCATTTGTGGAGACTCACACCCAACTTACAAGATAACGTCCT
CGTCAAGCCTAACACAAAACACATGTAGATCACAGGGTATTTAGCTCTTA
Found at i:25925110 original size:64 final size:64
Alignment explanation
Indices: 25925036--25925163 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
25925026 GTTCAACTAA
* * *
25925036 TGACTACTCTAATATCATTTGTGAAGACTCACACCCAATTTATAAGGTATTGTCTATTTTGACT
1 TGACTACTCTAATATCATTTGTGAAAACTCACACCCAACTTATAAGGTATTATCTATTTTGACT
* *
25925100 TGACTACTCTAATATCATTTGTGAAAACTCACATCCAACTTATAATGTATTATCTATTTTGACT
1 TGACTACTCTAATATCATTTGTGAAAACTCACACCCAACTTATAAGGTATTATCTATTTTGACT
25925164 CGAAGGTTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (64 bp):
TGACTACTCTAATATCATTTGTGAAAACTCACACCCAACTTATAAGGTATTATCTATTTTGACT
Found at i:25934609 original size:23 final size:23
Alignment explanation
Indices: 25934549--25934619 Score: 67
Period size: 22 Copynumber: 3.1 Consensus size: 23
25934539 ATACCATATG
* * *
25934549 AAAATAATATAAAAAATATAA-A
1 AAAATTATATATAAAATTTAATA
*
25934571 AATAA-TATGATTTAAAATTTAATA
1 AA-AATTAT-ATATAAAATTTAATA
25934595 AAAATTATATAT-AAATTTAATA
1 AAAATTATATATAAAATTTAATA
25934617 AAA
1 AAA
25934620 TAAAATTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
22 17 0.43
23 17 0.43
24 6 0.15
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (23 bp):
AAAATTATATATAAAATTTAATA
Found at i:25936145 original size:4 final size:4
Alignment explanation
Indices: 25936136--25936193 Score: 53
Period size: 4 Copynumber: 14.5 Consensus size: 4
25936126 AGATTAACAT
* * * * * * *
25936136 ATAC ATAC ATAC ATAT ATAT ATAT ATAT ATAT ATAT ATAC ATAC AGAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
25936184 ATAC ATAC AT
1 ATAC ATAC AT
25936194 TTTAAGGCCT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (4 bp):
ATAC
Found at i:25936155 original size:2 final size:2
Alignment explanation
Indices: 25936134--25936174 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
25936124 TCAGATTAAC
* * *
25936134 AT AT AC AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25936175 CATACAGACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:25943664 original size:35 final size:36
Alignment explanation
Indices: 25943625--25943703 Score: 101
Period size: 35 Copynumber: 2.2 Consensus size: 36
25943615 TTTTAAATAA
* *
25943625 TATTAATATAATTATTAAAATATTAAAA-AATTAT-T
1 TATTAATAAAATTATTAAAAT-TAAAAATAATTATAT
*
25943660 TATTATTAAAATTATTAAAATTAAAAATAATTATAT
1 TATTAATAAAATTATTAAAATTAAAAATAATTATAT
25943696 T-TTAATAA
1 TATTAATAA
25943704 TATTCAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
34 5 0.13
35 31 0.82
36 2 0.05
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (36 bp):
TATTAATAAAATTATTAAAATTAAAAATAATTATAT
Found at i:25943675 original size:9 final size:9
Alignment explanation
Indices: 25943634--25943682 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
25943624 ATATTAATAT
25943634 AATTATTAA
1 AATTATTAA
25943643 AA-TATTAAAA
1 AATTATT--AA
25943653 AATTATT--
1 AATTATTAA
*
25943660 TATTATTAA
1 AATTATTAA
25943669 AATTATTAA
1 AATTATTAA
25943678 AATTA
1 AATTA
25943683 AAAATAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
7 6 0.18
8 4 0.12
9 15 0.45
10 4 0.12
11 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AATTATTAA
Found at i:25943716 original size:33 final size:32
Alignment explanation
Indices: 25943625--25943718 Score: 84
Period size: 33 Copynumber: 2.8 Consensus size: 32
25943615 TTTTAAATAA
* * *
25943625 TATTAATATAATTATTAAAATATTAAAAAATTATT
1 TATTATTAAAATTATT--AATATT-AAAAATAATT
*
25943660 TATTATTAAAATTATTAAAATTAAAAATAATT
1 TATTATTAAAATTATTAATATTAAAAATAATT
25943692 ATATT-TTAATAA-TATTCAATATTAAAA
1 -TATTATTAA-AATTATT-AATATTAAAA
25943719 TATTATGTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
32 17 0.33
33 20 0.39
35 14 0.27
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (32 bp):
TATTATTAAAATTATTAATATTAAAAATAATT
Found at i:25943720 original size:18 final size:19
Alignment explanation
Indices: 25943699--25943742 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
25943689 ATTATATTTT
*
25943699 AATAATAT-TCAATATTAA
1 AATAATATGTCAATATAAA
*
25943717 AATATTATGTCAATATAAA
1 AATAATATGTCAATATAAA
25943736 AAGTAAT
1 AA-TAAT
25943743 TAAAATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 7 0.33
19 11 0.52
20 3 0.14
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (19 bp):
AATAATATGTCAATATAAA
Found at i:25943786 original size:15 final size:15
Alignment explanation
Indices: 25943768--25943980 Score: 79
Period size: 13 Copynumber: 14.6 Consensus size: 15
25943758 TATTATTCTT
25943768 TATATTATTTAATAA
1 TATATTATTTAATAA
25943783 TATATTA--TAAT-A
1 TATATTATTTAATAA
*
25943795 T-TATTA-TTCATAA
1 TATATTATTTAATAA
25943808 TAT-TTA--T--TAA
1 TATATTATTTAATAA
25943818 TATATTATATTAATAGA
1 TATATTAT-TTAATA-A
25943835 -ATATTATTTATTATTAA
1 TATATTATTTA--A-TAA
** *
25943852 TATATTGCTTATTAA
1 TATATTATTTAATAA
25943867 TATATTA-TT-ATAA
1 TATATTATTTAATAA
*
25943880 TAT-TTATTTATTAAA
1 TATATTATTTAAT-AA
25943895 TTAATATTATTTATTATTTAA
1 -T-ATATTATTTA--A--TAA
*
25943916 TATAATA-TTAATAA
1 TATATTATTTAATAA
*
25943930 -ATAATA-TT-ATAA
1 TATATTATTTAATAA
25943942 TAT-TTATTT-ATAA
1 TATATTATTTAATAA
*
25943955 TAATATTTATTTATTAA
1 T-ATA-TTATTTAATAA
*
25943972 TATAATATT
1 TATATTATT
25943981 ATTTATAAGT
Statistics
Matches: 156, Mismatches: 12, Indels: 60
0.68 0.05 0.26
Matches are distributed among these distances:
10 6 0.04
11 8 0.05
12 15 0.10
13 34 0.22
14 10 0.06
15 25 0.16
16 20 0.13
17 9 0.06
18 20 0.13
19 5 0.03
20 1 0.01
21 2 0.01
22 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (15 bp):
TATATTATTTAATAA
Found at i:25943801 original size:38 final size:35
Alignment explanation
Indices: 25943758--25943826 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
25943748 TAAAACTATT
* * *
25943758 TATTATTCTTTATATTATTTAATAATATATTATAA
1 TATTATTATTCATAATATTTAATAATATATTATAA
*
25943793 TATTATTATTCATAATATTTATTAATATATTATA
1 TATTATTATTCATAATATTTAATAATATATTATA
25943827 TTAATAGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (35 bp):
TATTATTATTCATAATATTTAATAATATATTATAA
Found at i:25943908 original size:22 final size:22
Alignment explanation
Indices: 25943880--25943925 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
25943870 ATTATTATAA
25943880 TATTTATTTATTAAAT-TAATAT
1 TATTTA-TTATTAAATATAATAT
*
25943902 TATTTATTATTTAATATAATAT
1 TATTTATTATTAAATATAATAT
25943924 TA
1 TA
25943926 ATAAATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TATTTATTATTAAATATAATAT
Found at i:25943978 original size:22 final size:20
Alignment explanation
Indices: 25943871--25943986 Score: 75
Period size: 21 Copynumber: 6.0 Consensus size: 20
25943861 TATTAATATA
*
25943871 TTATTATAATATTTATTTA-
1 TTATAATAATATTTATTTAT
25943890 TTA-AATTAATA-TTATTTA-
1 TTATAA-TAATATTTATTTAT
* * *
25943908 TTAT-TTAATATAATATTAAT
1 TTATAATAATAT-TTATTTAT
** * *
25943928 AAATAATATTATAATATTTAT
1 TTATAATAATAT-TTATTTAT
25943949 TTATAATAATATTTATTTAT
1 TTATAATAATATTTATTTAT
*
25943969 TAAT-ATAATA-TTATTTAT
1 TTATAATAATATTTATTTAT
25943987 AAGTAAAATT
Statistics
Matches: 77, Mismatches: 14, Indels: 13
0.74 0.13 0.12
Matches are distributed among these distances:
17 5 0.06
18 19 0.25
19 19 0.25
20 12 0.16
21 22 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTATAATAATATTTATTTAT
Found at i:25946420 original size:2 final size:2
Alignment explanation
Indices: 25946404--25946439 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
25946394 TGTAAATTGG
*
25946404 AT AT -T AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25946440 AATGTGAACT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:25948797 original size:17 final size:17
Alignment explanation
Indices: 25948775--25948808 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
25948765 TAATATTCCC
25948775 TCTATCTTATT-TTTTTG
1 TCTATCTT-TTCTTTTTG
25948792 TCTATCTTTTCTTTTTG
1 TCTATCTTTTCTTTTTG
25948809 GGATGTCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.09, C:0.15, G:0.06, T:0.71
Consensus pattern (17 bp):
TCTATCTTTTCTTTTTG
Found at i:25950036 original size:23 final size:22
Alignment explanation
Indices: 25949783--25950244 Score: 209
Period size: 22 Copynumber: 21.0 Consensus size: 22
25949773 AATTGAAAAA
*
25949783 TTAAAAGTAAATCAAT-ATAAC
1 TTAATAGTAAATCAATGATAAC
* *
25949804 CTAATAGT-AATC-ATCGATAAA
1 TTAATAGTAAATCAAT-GATAAC
* * * *
25949825 TTAACAGTTAATTAGTGATAATTC
1 TTAATAGTAAATCAATGATAA--C
* *
25949849 TGT-ATAGTAAATTAGTGATAAC
1 T-TAATAGTAAATCAATGATAAC
* * * * *
25949871 TTAATAATATATAAATAATAAT
1 TTAATAGTAAATCAATGATAAC
25949893 TTAATAGTAAAT-AATTGATAAC
1 TTAATAGTAAATCAA-TGATAAC
* *
25949915 TTAGTAGTAAATCAAT-A-AAA
1 TTAATAGTAAATCAATGATAAC
*
25949935 TATAATAGTAAATGC-ATAATAAC
1 T-TAATAGTAAAT-CAATGATAAC
*
25949958 TTAATAGTAAATCAATTATAAC
1 TTAATAGTAAATCAATGATAAC
* * * *
25949980 ATAATTGTAAATGCAA-AAT-AG
1 TTAATAGTAAAT-CAATGATAAC
*
25950001 TATAGTAGTAAATCAATGATAAC
1 T-TAATAGTAAATCAATGATAAC
* *
25950024 TTAATAGAAAAATAAATGATAAC
1 TTAATAG-TAAATCAATGATAAC
* * *
25950047 TTAATAGTTAATCATTGATAAT
1 TTAATAGTAAATCAATGATAAC
*
25950069 TTAATAGTAAATCAATGA-AAA
1 TTAATAGTAAATCAATGATAAC
* *
25950090 TTCAGTAATAAATTACAA--ATAAC
1 TT-AATAGTAAA-T-CAATGATAAC
*** ** **
25950113 TTAATAGTAAATTTGTTTTAGT
1 TTAATAGTAAATCAATGATAAC
* * *
25950135 TTAATAGTAATTAAATTATAAAC
1 TTAATAGTAAATCAATGAT-AAC
** *
25950158 TTAGCAGTAAATC-ATAAATAAC
1 TTAATAGTAAATCAAT-GATAAC
* *
25950180 TTAGA-AATAAATCAATGATAAT
1 TTA-ATAGTAAATCAATGATAAC
* * * *
25950202 TTAGTAGTTAATCACT-AAAAC
1 TTAATAGTAAATCAATGATAAC
*
25950223 TCAATAGTAAATCAATGATAAC
1 TTAATAGTAAATCAATGATAAC
25950245 ATGGTAGCAA
Statistics
Matches: 326, Mismatches: 83, Indels: 63
0.69 0.18 0.13
Matches are distributed among these distances:
19 2 0.01
20 7 0.02
21 57 0.17
22 189 0.58
23 50 0.15
24 20 0.06
25 1 0.00
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (22 bp):
TTAATAGTAAATCAATGATAAC
Found at i:25950296 original size:22 final size:22
Alignment explanation
Indices: 25950268--25950349 Score: 94
Period size: 22 Copynumber: 3.7 Consensus size: 22
25950258 CATAATAGTA
*
25950268 TATAGTAAATCATTGATAATTT
1 TATAGTAAATCATTGACAATTT
*
25950290 TATAGTAAATTATTGACAA-TT
1 TATAGTAAATCATTGACAATTT
* * *
25950311 TAGTAGTAAATCACTAACAATGT
1 TA-TAGTAAATCATTGACAATTT
*
25950334 TATAGTAAATTATTGA
1 TATAGTAAATCATTGA
25950350 TAACTTAGCT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
21 4 0.08
22 42 0.86
23 3 0.06
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (22 bp):
TATAGTAAATCATTGACAATTT
Found at i:25950364 original size:44 final size:43
Alignment explanation
Indices: 25950270--25950388 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 43
25950260 TAATAGTATA
* * * *
25950270 TAGTAAATCATTGATAATTTTATAGTAAATTATTGACAATTTAG
1 TAGTAAATCACTAACAA-TTTATAGTAAATTATTGACAACTTAG
*
25950314 TAGTAAATCACTAACAATGTTATAGTAAATTATTGATAACTTAG
1 TAGTAAATCACTAACAAT-TTATAGTAAATTATTGACAACTTAG
* *
25950358 CT-GTAAATTAGTAACAATTTAGTA-TAAATTA
1 -TAGTAAATCACTAACAATTTA-TAGTAAATTA
25950389 ATAATGATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
43 11 0.17
44 53 0.82
45 1 0.02
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (43 bp):
TAGTAAATCACTAACAATTTATAGTAAATTATTGACAACTTAG
Found at i:25950379 original size:22 final size:21
Alignment explanation
Indices: 25950294--25950412 Score: 69
Period size: 22 Copynumber: 5.5 Consensus size: 21
25950284 TAATTTTATA
* *
25950294 GTAAATTATTGACAATTTAGT
1 GTAAATTAGTAACAATTTAGT
* *
25950315 AGTAAATCACTAACAATGTTA-T
1 -GTAAATTAGTAACAAT-TTAGT
* * * *
25950337 AGTAAATTATTGATAACTTAGCT
1 -GTAAATTAGTAACAATTTAG-T
25950360 GTAAATTAGTAACAATTTAGT
1 GTAAATTAGTAACAATTTAGT
* * ** *
25950381 ATAAATTAATAATGATTTAATT
1 GTAAATTAGTAACAATTT-AGT
25950403 GTAAATTAGT
1 GTAAATTAGT
25950413 TAATTATTAA
Statistics
Matches: 74, Mismatches: 19, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
21 18 0.24
22 52 0.70
23 4 0.05
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (21 bp):
GTAAATTAGTAACAATTTAGT
Found at i:25950488 original size:32 final size:31
Alignment explanation
Indices: 25950450--25950512 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
25950440 GTCGATAACT
* *
25950450 TTATAGTAAATTAGTAATAATTTTATAATAAA
1 TTATAGTAAATTAG-AAAAACTTTATAATAAA
25950482 TTATAGTAAATTAGAAAAACTTTATAATAAA
1 TTATAGTAAATTAGAAAAACTTTATAATAAA
25950513 AGTATCTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (31 bp):
TTATAGTAAATTAGAAAAACTTTATAATAAA
Found at i:25950557 original size:22 final size:22
Alignment explanation
Indices: 25950516--25950602 Score: 102
Period size: 22 Copynumber: 4.0 Consensus size: 22
25950506 TAATAAAAGT
* * *
25950516 ATCTATAACTTAATAGTAAATT
1 ATCTATAACTTAGTAATAAATC
* *
25950538 ATCAATAATTTAGTAATAAATC
1 ATCTATAACTTAGTAATAAATC
* *
25950560 GTTTATAACTTAGTAATAAATC
1 ATCTATAACTTAGTAATAAATC
*
25950582 ATCTATAACTTAGTGATAAAT
1 ATCTATAACTTAGTAATAAAT
25950603 TAATGATAAT
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (22 bp):
ATCTATAACTTAGTAATAAATC
Found at i:25950567 original size:44 final size:44
Alignment explanation
Indices: 25950519--25950602 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
25950509 TAAAAGTATC
* * *
25950519 TATAACTTAATAGTAAATTATCAATAATTTAGTAATAAATCGTT
1 TATAACTTAATAATAAATCATCAATAACTTAGTAATAAATCGTT
* * *
25950563 TATAACTTAGTAATAAATCATCTATAACTTAGTGATAAAT
1 TATAACTTAATAATAAATCATCAATAACTTAGTAATAAAT
25950603 TAATGATAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.39
Consensus pattern (44 bp):
TATAACTTAATAATAAATCATCAATAACTTAGTAATAAATCGTT
Found at i:25950611 original size:22 final size:22
Alignment explanation
Indices: 25950520--25950616 Score: 61
Period size: 22 Copynumber: 4.4 Consensus size: 22
25950510 AAAAGTATCT
* * * *
25950520 ATAACTTAATAGTAAATTATCA
1 ATAACTTAGTAATAAATAATCG
* ** **
25950542 ATAATTTAGTAATAAATCGTTT
1 ATAACTTAGTAATAAATAATCG
* *
25950564 ATAACTTAGTAATAAATCATCT
1 ATAACTTAGTAATAAATAATCG
*
25950586 ATAACTTAGTGATAAATTAAT-G
1 ATAACTTAGTAATAAA-TAATCG
*
25950608 ATAATTTAG
1 ATAACTTAG
25950617 AAGTAATCAG
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
22 57 0.95
23 3 0.05
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.39
Consensus pattern (22 bp):
ATAACTTAGTAATAAATAATCG
Found at i:25951188 original size:11 final size:11
Alignment explanation
Indices: 25951174--25951270 Score: 54
Period size: 11 Copynumber: 8.9 Consensus size: 11
25951164 TATAACTTTA
25951174 TAATAAATTAT
1 TAATAAATTAT
* *
25951185 TAATAACTTAG
1 TAATAAATTAT
*
25951196 TAATAAATCAT
1 TAATAAATTAT
* * *
25951207 TCATAACTTAA
1 TAATAAATTAT
* *
25951218 TAGT-AATCAT
1 TAATAAATTAT
* * *
25951228 TAGTAATTTAA
1 TAATAAATTAT
*
25951239 TAATAAATCAT
1 TAATAAATTAT
*
25951250 TAATAACA-TAA
1 TAATAA-ATTAT
25951261 TAATAAATTA
1 TAATAAATTA
25951271 GTTATAATAA
Statistics
Matches: 60, Mismatches: 23, Indels: 6
0.67 0.26 0.07
Matches are distributed among these distances:
10 8 0.13
11 51 0.85
12 1 0.02
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (11 bp):
TAATAAATTAT
Found at i:25951227 original size:21 final size:21
Alignment explanation
Indices: 25951133--25951277 Score: 123
Period size: 22 Copynumber: 6.6 Consensus size: 21
25951123 AATTTTATAG
*
25951133 TAAATCATTTATAACTTCATAGA
1 TAAATCA-TTATAACTTAATA-A
* *
25951156 -AAATTAGTTATAACTTTATAA
1 TAAATCA-TTATAACTTAATAA
* *
25951177 TAAATTATTAATAACTTAGTAA
1 TAAATCATT-ATAACTTAATAA
*
25951199 TAAATCATTCATAACTTAATAG
1 TAAATCATT-ATAACTTAATAA
*
25951221 T-AATCATTAGTAATTTAATAA
1 TAAATCATTA-TAACTTAATAA
*
25951242 TAAATCATTAATAACATAATAA
1 TAAATCATT-ATAACTTAATAA
*
25951264 TAAATTAGTTATAA
1 TAAATCA-TTATAA
25951278 TAATATATCA
Statistics
Matches: 102, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
20 1 0.01
21 20 0.20
22 78 0.76
23 3 0.03
ACGTcount: A:0.49, C:0.08, G:0.04, T:0.39
Consensus pattern (21 bp):
TAAATCATTATAACTTAATAA
Found at i:25968642 original size:15 final size:15
Alignment explanation
Indices: 25968622--25968651 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25968612 CGGCAACAAT
*
25968622 AGAAAAAAAATAAAA
1 AGAAAAAAAAGAAAA
25968637 AGAAAAAAAAGAAAA
1 AGAAAAAAAAGAAAA
25968652 TAATGAAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (15 bp):
AGAAAAAAAAGAAAA
Found at i:25970577 original size:3 final size:3
Alignment explanation
Indices: 25970569--25970610 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
25970559 TGATAGTCAG
25970569 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
25970611 GTTGAATGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:25972040 original size:13 final size:13
Alignment explanation
Indices: 25972022--25972047 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25972012 GGTTGGTGAA
25972022 TCCGATCCCAACT
1 TCCGATCCCAACT
25972035 TCCGATCCCAACT
1 TCCGATCCCAACT
25972048 CCAAGCAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.46, G:0.08, T:0.23
Consensus pattern (13 bp):
TCCGATCCCAACT
Found at i:25986801 original size:18 final size:18
Alignment explanation
Indices: 25986773--25986807 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
25986763 GCAAAGATAC
25986773 AGTCCCATCC-ATGAACA
1 AGTCCCATCCAATGAACA
25986790 AGTCCTCATCCAATGAAC
1 AGTCC-CATCCAATGAAC
25986808 CAGGGAGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.34, C:0.34, G:0.11, T:0.20
Consensus pattern (18 bp):
AGTCCCATCCAATGAACA
Found at i:25991321 original size:31 final size:31
Alignment explanation
Indices: 25991285--25991351 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
25991275 AAAATATATT
*
25991285 TTCTTCATATTTTTTACTTTTT-TTTTTCTTC
1 TTCTTCATATTTTCTA-TTTTTCTTTTTCTTC
* * *
25991316 TTCTTCTTCTTTTCTATTTTTCTTTTTGTTC
1 TTCTTCATATTTTCTATTTTTCTTTTTCTTC
25991347 TTCTT
1 TTCTT
25991352 TCTTCTATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 5 0.16
31 26 0.84
ACGTcount: A:0.06, C:0.18, G:0.01, T:0.75
Consensus pattern (31 bp):
TTCTTCATATTTTCTATTTTTCTTTTTCTTC
Found at i:25991335 original size:28 final size:27
Alignment explanation
Indices: 25991307--25991362 Score: 80
Period size: 25 Copynumber: 2.1 Consensus size: 27
25991297 TTTACTTTTT
*
25991307 TTTTTCTTCTTCTTCTTC-TT-TTCTA
1 TTTTTCTTTTTCTTCTTCTTTCTTCTA
*
25991332 TTTTTCTTTTTGTTCTTCTTTCTTCTA
1 TTTTTCTTTTTCTTCTTCTTTCTTCTA
25991359 TTTT
1 TTTT
25991363 AAGATTTGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 16 0.59
26 2 0.07
27 9 0.33
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.75
Consensus pattern (27 bp):
TTTTTCTTTTTCTTCTTCTTTCTTCTA
Found at i:25994017 original size:18 final size:18
Alignment explanation
Indices: 25993991--25994027 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
25993981 TCAGCTTGCT
*
25993991 TATTCTAAATGATTAGTA
1 TATTCTAAATGATCAGTA
*
25994009 TATTGTAAATGATCAGTA
1 TATTCTAAATGATCAGTA
25994027 T
1 T
25994028 CCATCTCACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.43
Consensus pattern (18 bp):
TATTCTAAATGATCAGTA
Found at i:26001025 original size:264 final size:264
Alignment explanation
Indices: 26000555--26001083 Score: 950
Period size: 264 Copynumber: 2.0 Consensus size: 264
26000545 CTCTAGCCTC
* *
26000555 CTCGCTCACATTGTGAAGAGTATCGGACAACTCCCGCTGGGTTGTCTCGATCTCTCTCACTCTAT
1 CTCGCTCACATTGTGAAGAGTATCGGACAACTCCCACTGGGTTGTCTCGATCTCTCTCACTCGAT
26000620 CTTTAGTCGCCATGTGAGTTTTCATTGCGACCACCGCGGTCTCAAGTTCCTCAATTCTTTATTGG
66 CTTTAGTCGCCATGTGAGTTTTCATTGCGACCACCGCGGTCTCAAGTTCCTCAATTCTTTATTGG
*
26000685 TAATTGGGTCCACCACTTGTGGCCATCTCTTCTATTTTCTAGCACTACTCAACCATGCTCTGATA
131 TAATTGGGTCCACCACTTGTGGCCATCTCTTATATTTTCTAGCACTACTCAACCATGCTCTGATA
* *
26000750 TCACGTGTCACGGACTAAGCTTTCTCTCAATAAGCAATAGATCGTACGGCACTTGCATGGACGCT
196 TCACGTGTCACGGACTAAGCTTTCTCTCAATAAGCAATAGACCGTACGGCACTTGAATGGACGCT
26000815 TCCA
261 TCCA
*
26000819 CTCGCTCATATTGTGAAGAGTATCGGACAACTCCCACTGGGTTGTCTCGATCTCTCTCACTCGAT
1 CTCGCTCACATTGTGAAGAGTATCGGACAACTCCCACTGGGTTGTCTCGATCTCTCTCACTCGAT
*
26000884 CTTTAGTCGCCATGTGAGTTTTCATTGCGGCCACCGCGGTCTCAAGTTCCTCAATTCTTTATTGG
66 CTTTAGTCGCCATGTGAGTTTTCATTGCGACCACCGCGGTCTCAAGTTCCTCAATTCTTTATTGG
** * *
26000949 TAATTGGGTCCACCACTTGTGGCCATCTCTTATATTTTCTAGCACTTTTCAATCGTGCTCTGATA
131 TAATTGGGTCCACCACTTGTGGCCATCTCTTATATTTTCTAGCACTACTCAACCATGCTCTGATA
*
26001014 TCACGTGTCACGGACTAAGCTTTCTCTCAATAAGCAATAGACCGTGCGGCACTTGAATGGACGCT
196 TCACGTGTCACGGACTAAGCTTTCTCTCAATAAGCAATAGACCGTACGGCACTTGAATGGACGCT
26001079 TCCA
261 TCCA
26001083 C
1 C
26001084 CCAAGTCAGC
Statistics
Matches: 253, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
264 253 1.00
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.33
Consensus pattern (264 bp):
CTCGCTCACATTGTGAAGAGTATCGGACAACTCCCACTGGGTTGTCTCGATCTCTCTCACTCGAT
CTTTAGTCGCCATGTGAGTTTTCATTGCGACCACCGCGGTCTCAAGTTCCTCAATTCTTTATTGG
TAATTGGGTCCACCACTTGTGGCCATCTCTTATATTTTCTAGCACTACTCAACCATGCTCTGATA
TCACGTGTCACGGACTAAGCTTTCTCTCAATAAGCAATAGACCGTACGGCACTTGAATGGACGCT
TCCA
Found at i:26006872 original size:26 final size:26
Alignment explanation
Indices: 26006833--26006884 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26006823 TCCCATGTTT
26006833 ATTTAGTAAATAGTATCAATTTAACA
1 ATTTAGTAAATAGTATCAATTTAACA
*
26006859 ATTTAGTAAGTAGTATCAATTTAACA
1 ATTTAGTAAATAGTATCAATTTAACA
26006885 CAATGGGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (26 bp):
ATTTAGTAAATAGTATCAATTTAACA
Found at i:26010009 original size:14 final size:15
Alignment explanation
Indices: 26009985--26010023 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
26009975 AATTCGTTTG
*
26009985 TAATTTATTTGTTTA
1 TAATTTATTTGATTA
*
26010000 -AATTTGTTTGATTA
1 TAATTTATTTGATTA
26010014 TAATTTATTT
1 TAATTTATTT
26010024 ATTTTTCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (15 bp):
TAATTTATTTGATTA
Found at i:26015266 original size:2 final size:2
Alignment explanation
Indices: 26015253--26015291 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
26015243 TTTGGTTGAA
*
26015253 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26015292 AAGGGCTCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:26018081 original size:10 final size:10
Alignment explanation
Indices: 26018068--26018118 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
26018058 ATTGTATTTT
26018068 TTATTATTAA
1 TTATTATTAA
*
26018078 TTATTAATAA
1 TTATTATTAA
*
26018088 -TATTTATTAT
1 TTA-TTATTAA
*
26018098 TTATTCTTAA
1 TTATTATTAA
26018108 TTATTATTAA
1 TTATTATTAA
26018118 T
1 T
26018119 ATTTTCTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
9 2 0.06
10 29 0.88
11 2 0.06
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (10 bp):
TTATTATTAA
Found at i:26018129 original size:30 final size:30
Alignment explanation
Indices: 26018057--26018122 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
26018047 TCAATTTTTT
*
26018057 TATTGTATTTTTTATTATTAATTATTAATAA
1 TATT-TATTATTTATTATTAATTATTAATAA
* *
26018088 TATTTATTATTTATTCTTAATTATTATTAA
1 TATTTATTATTTATTATTAATTATTAATAA
26018118 TATTT
1 TATTT
26018123 TCTATTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 28 0.88
31 4 0.12
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (30 bp):
TATTTATTATTTATTATTAATTATTAATAA
Found at i:26018903 original size:14 final size:14
Alignment explanation
Indices: 26018884--26018910 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26018874 GGGTGAATTG
26018884 ATAAAAATAAAAAA
1 ATAAAAATAAAAAA
26018898 ATAAAAATAAAAA
1 ATAAAAATAAAAA
26018911 TTTATGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (14 bp):
ATAAAAATAAAAAA
Found at i:26022426 original size:45 final size:44
Alignment explanation
Indices: 26022333--26022928 Score: 326
Period size: 40 Copynumber: 13.8 Consensus size: 44
26022323 ACATAAAACT
* ** * *
26022333 CTCTAAACAAAGGCTTCCCAACTTTGAAAAAGTAAA-CAAAGCTT
1 CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAATC-AAGCTC
* *
26022377 CTCTAAACAGAGCCTTAACGACTTTAGAAAAAATAAATCAAGCTC
1 CTCTAAACAGAGGCTTAACAACTTT-GAAAAAATAAATCAAGCTC
* *
26022422 CTCTAATCAGAGGCTTAACAACTTT-AAAAAATAAAT-AAGGTTC
1 CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAATCAA-GCTC
* *
26022465 CTCTAAATAGAGGCTCAACAACTTTGAAAAAATAAAT-AAGGCTC
1 CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAATCAA-GCTC
* * * * * * *
26022509 TTTTAAGCAGAGACTCAACAACTTTG-AAAAAT--A-GAGGCTC
1 CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAATCAAGCTC
* * * * * * * *
26022549 CTTTAAGCAAATGCTCAACAACTTTAAAAAAAAAAAATAAATAAAGCTA
1 CTCTAAACAGAGGCTTAACAACTTT-----GAAAAAATAAATCAAGCTC
* * * * * * * *
26022598 TTTTAAATAGAGGCTCAATAACTTTAAAAAATAAATAAATAAAACTC
1 CTCTAAACAGAGGCTTAACAACTTT--GAAA-AAATAAATCAAGCTC
* * * * *
26022645 CTCTAAGCAAAGGCTCAACAAATTTG-AAAAATAAATAAAAGCTC
1 CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAAT-CAAGCTC
* ** * * * * *
26022689 CTCTAAGCAGAGGCACAATAACTTTTATAAAATAAATAAATCTC
1 CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAATCAAGCTC
* * ** *
26022733 CTCTAAGCAGAGACACAATAACTTT-AAAAAAT-AA--AAGCTC
1 CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAATCAAGCTC
**
26022773 CTCTAAACAGAGGCACAACAACTTT-AAAAAATAAA--AAGCTC
1 CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAATCAAGCTC
* *
26022814 CTCTAAATAGAGG-TACAACAACTTTG-AAAAAT-AA--AAGCTC
1 CTCTAAACAGAGGCT-TAACAACTTTGAAAAAATAAATCAAGCTC
* * ** *
26022854 TTCTAAACAGAAGCACAACAACTTTG-GAAAAT-AA--AAGCTC
1 CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAATCAAGCTC
*
26022894 CTCTAAACAGAGGCATAACAACTTTG-AAAAATAAA
1 CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAA
26022929 AAGCTCATCG
Statistics
Matches: 460, Mismatches: 70, Indels: 47
0.80 0.12 0.08
Matches are distributed among these distances:
40 129 0.28
41 40 0.09
42 4 0.01
43 56 0.12
44 117 0.25
45 46 0.10
46 13 0.03
47 31 0.07
48 1 0.00
49 23 0.05
ACGTcount: A:0.48, C:0.18, G:0.11, T:0.23
Consensus pattern (44 bp):
CTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAATCAAGCTC
Found at i:26022659 original size:47 final size:47
Alignment explanation
Indices: 26022545--26022807 Score: 203
Period size: 44 Copynumber: 5.8 Consensus size: 47
26022535 AAAAATAGAG
* * * * *
26022545 GCTCCTTTAAGCAAATGCTCAACAACTTTAAAAAAAAAAAATAAATAAA
1 GCTCCTCTAAGCAGAGGCTCAATAACTTT--AAAAAATAAATAAATAAA
** * **
26022594 GCTATTTTAAATAGAGGCTCAATAACTTTAAAAAATAAATAAATAAA
1 GCTCCTCTAAGCAGAGGCTCAATAACTTTAAAAAATAAATAAATAAA
* * * * *
26022641 ACTCCTCTAAGCAAAGGCTCAACAAATTTGAAAAATAAAT--A-AAA
1 GCTCCTCTAAGCAGAGGCTCAATAACTTTAAAAAATAAATAAATAAA
* *
26022685 GCTCCTCTAAGCAGAGGCACAATAACTTTTATAAAATAAATAAAT---
1 GCTCCTCTAAGCAGAGGCTCAATAAC-TTTAAAAAATAAATAAATAAA
* *
26022730 -CTCCTCTAAGCAGAGACACAATAACTTT---AAA-AAAT--A-AAA
1 GCTCCTCTAAGCAGAGGCTCAATAACTTTAAAAAATAAATAAATAAA
* * *
26022769 GCTCCTCTAAACAGAGGCACAACAACTTTAAAAAATAAA
1 GCTCCTCTAAGCAGAGGCTCAATAACTTTAAAAAATAAA
26022808 AAGCTCCTCT
Statistics
Matches: 173, Mismatches: 29, Indels: 29
0.75 0.13 0.13
Matches are distributed among these distances:
37 1 0.01
39 4 0.02
40 28 0.16
43 6 0.03
44 51 0.29
45 13 0.08
47 48 0.28
49 22 0.13
ACGTcount: A:0.51, C:0.17, G:0.09, T:0.23
Consensus pattern (47 bp):
GCTCCTCTAAGCAGAGGCTCAATAACTTTAAAAAATAAATAAATAAA
Found at i:26022796 original size:224 final size:223
Alignment explanation
Indices: 26022407--26022809 Score: 527
Period size: 224 Copynumber: 1.8 Consensus size: 223
26022397 ACTTTAGAAA
* * * * * * * *
26022407 AAATAAATCAAGCTCCTCTAATCAGAGGCTTAACAACTTTAAAAAATAAATAAGGTTCCTCTAAA
1 AAATAAATAAAACTCCTCTAAGCAAAGGCTCAACAAATTTAAAAAATAAATAAAGCTCCTCTAAA
* * * * * * *
26022472 TAGAGGCTCAACAACTTTGAAAAAATAAATAAGGCTCTTTTAAGCAGAGACTCAACAACTTTGAA
66 CAGAGGCACAACAACTTTGAAAAAATAAATAAAGCTCCTCTAAGCAGAGACACAACAACTTTAAA
* * * * * *
26022537 AAATAGAGGCTCCTTTAAGCAAATGCTCAACAACTTTAAAAAAAAAAAATAAATAAAGCTATTTT
131 AAATAAAAGCTCCTCTAAACAAAGGCACAACAACTTTAAAAAAAAAAAATAAATAAAGCTATTTT
26022602 AAATAGAGGCTCAATAACTTTAAAAAAT
196 AAATAGAGGCTCAATAACTTTAAAAAAT
*
26022630 AAATAAATAAAACTCCTCTAAGCAAAGGCTCAACAAATTTGAAAAATAAATAAAAGCTCCTCTAA
1 AAATAAATAAAACTCCTCTAAGCAAAGGCTCAACAAATTTAAAAAATAAAT-AAAGCTCCTCTAA
* * * * * *
26022695 GCAGAGGCACAATAACTTTTATAAAATAAATAAATCTCCTCTAAGCAGAGACACAATAACTTTAA
65 ACAGAGGCACAACAACTTTGAAAAAATAAATAAAGCTCCTCTAAGCAGAGACACAACAACTTTAA
* *
26022760 AAAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTAAAAAATAAAAA
130 AAAATAAAAGCTCCTCTAAACAAAGGCACAACAACTTTAAAAAAAAAAAA
26022810 GCTCCTCTAA
Statistics
Matches: 149, Mismatches: 30, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
223 44 0.30
224 105 0.70
ACGTcount: A:0.49, C:0.17, G:0.10, T:0.24
Consensus pattern (223 bp):
AAATAAATAAAACTCCTCTAAGCAAAGGCTCAACAAATTTAAAAAATAAATAAAGCTCCTCTAAA
CAGAGGCACAACAACTTTGAAAAAATAAATAAAGCTCCTCTAAGCAGAGACACAACAACTTTAAA
AAATAAAAGCTCCTCTAAACAAAGGCACAACAACTTTAAAAAAAAAAAATAAATAAAGCTATTTT
AAATAGAGGCTCAATAACTTTAAAAAAT
Found at i:26022851 original size:81 final size:81
Alignment explanation
Indices: 26022629--26022934 Score: 339
Period size: 81 Copynumber: 3.7 Consensus size: 81
26022619 CTTTAAAAAA
* * * *
26022629 TAAATAAAT-AAAA-CTCCTCTAAGCAAAGGCTCAACAAATTTGAAAAATAAATAAAAGCTCCTC
1 TAAA-AAATAAAAAGCTCCTCTAAACAGAGGCACAACAACTTTG---AA-AAATAAAAGCTCCTC
* *
26022692 TAAGCAGAGGCACAATAACTTT
61 TAAACAGAGGCACAACAAC-TT
* * * * * *
26022714 TATAAAATAAATAAATCTCCTCTAAGCAGAGACACAATAACTTTAAAAAATAAAAGCTCCTCTAA
1 TAAAAAAT-AA-AAAGCTCCTCTAAACAGAGGCACAACAACTTTGAAAAATAAAAGCTCCTCTAA
26022779 ACAGAGGCACAACAACTT
64 ACAGAGGCACAACAACTT
* * *
26022797 TAAAAAATAAAAAGCTCCTCTAAATAGAGGTACAACAACTTTGAAAAATAAAAGCTCTTCTAAAC
1 TAAAAAATAAAAAGCTCCTCTAAACAGAGGCACAACAACTTTGAAAAATAAAAGCTCCTCTAAAC
*
26022862 AGAAGCACAACAACTT
66 AGAGGCACAACAACTT
** *
26022878 TGGAAAAT-AAAAGCTCCTCTAAACAGAGGCATAACAACTTTGAAAAATAAAAAGCTC
1 TAAAAAATAAAAAGCTCCTCTAAACAGAGGCACAACAACTTTGAAAAAT-AAAAGCTC
26022935 ATCGACAATC
Statistics
Matches: 192, Mismatches: 24, Indels: 14
0.83 0.10 0.06
Matches are distributed among these distances:
80 37 0.19
81 76 0.40
82 2 0.01
83 9 0.05
84 36 0.19
85 5 0.03
86 1 0.01
87 3 0.02
88 23 0.12
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.21
Consensus pattern (81 bp):
TAAAAAATAAAAAGCTCCTCTAAACAGAGGCACAACAACTTTGAAAAATAAAAGCTCCTCTAAAC
AGAGGCACAACAACTT
Found at i:26022889 original size:121 final size:124
Alignment explanation
Indices: 26022629--26022934 Score: 361
Period size: 121 Copynumber: 2.5 Consensus size: 124
26022619 CTTTAAAAAA
* * * * *
26022629 TAAATAAATAAAA-CTCCTCTAAGCAAAGGCTCAACAAATTTGAAAAATAAATAAAAGCTCCTCT
1 TAAA-AAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTT-AAAAA-ATA-AAAAGCTCCTCT
* * * * * *
26022693 AAGCAGAGGCACAATAACTTTTATAAAATAAATAAATCTCCTCTAAGCAGAGACACAATAACTT
62 AAACAGAGGCACAACAACTTTGATAAAAT-AATAAAGCTCCTCTAAACAGAGACACAACAACTT
*
26022757 TAAAAAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTAAAAAATAAAAAGCTCCTCTAAAT
1 TAAAAAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTAAAAAATAAAAAGCTCCTCTAAAC
* *
26022822 AGAGGTACAACAACTTTGA-AAAAT-A-AAAGCTCTTCTAAACAGA-AGCACAACAACTT
66 AGAGGCACAACAACTTTGATAAAATAATAAAGCTCCTCTAAACAGAGA-CACAACAACTT
** * *
26022878 TGGAAAATAAAAGCTCCTCTAAACAGAGGCATAACAACTTTGAAAAATAAAAAGCTC
1 TAAAAAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTAAAAAATAAAAAGCTC
26022935 ATCGACAATC
Statistics
Matches: 158, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
120 1 0.01
121 78 0.49
122 1 0.01
124 5 0.03
125 30 0.19
126 2 0.01
127 13 0.08
128 28 0.18
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.21
Consensus pattern (124 bp):
TAAAAAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTAAAAAATAAAAAGCTCCTCTAAAC
AGAGGCACAACAACTTTGATAAAATAATAAAGCTCCTCTAAACAGAGACACAACAACTT
Found at i:26022928 original size:40 final size:40
Alignment explanation
Indices: 26022634--26022934 Score: 334
Period size: 40 Copynumber: 7.3 Consensus size: 40
26022624 AAAAATAAAT
* * * *
26022634 AAATAAAA-CTCCTCTAAGCAAAGGCTCAACAAATTTGAAAAA
1 AAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTG---AA
* * *
26022676 TAAATAAAAGCTCCTCTAAGCAGAGGCACAATAACTTTTATA
1 -AAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTGA-A
* * * * *
26022718 AAATAAATAAATCTCCTCTAAGCAGAGACACAATAACTTTAAA
1 AAAT--A-AAAGCTCCTCTAAACAGAGGCACAACAACTTTGAA
*
26022761 AAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTAAA
1 AAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTGAA
* *
26022801 AAATAAAAAGCTCCTCTAAATAGAGGTACAACAACTTTGAA
1 AAAT-AAAAGCTCCTCTAAACAGAGGCACAACAACTTTGAA
* * *
26022842 AAATAAAAGCTCTTCTAAACAGAAGCACAACAACTTTGGA
1 AAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTGAA
*
26022882 AAATAAAAGCTCCTCTAAACAGAGGCATAACAACTTTGAA
1 AAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTGAA
26022922 AAATAAAAAGCTC
1 AAAT-AAAAGCTC
26022935 ATCGACAATC
Statistics
Matches: 227, Mismatches: 24, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
40 106 0.47
41 51 0.22
42 1 0.00
43 14 0.06
44 55 0.24
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.21
Consensus pattern (40 bp):
AAATAAAAGCTCCTCTAAACAGAGGCACAACAACTTTGAA
Found at i:26023468 original size:21 final size:21
Alignment explanation
Indices: 26023437--26023515 Score: 95
Period size: 21 Copynumber: 3.7 Consensus size: 21
26023427 TTTACATCTA
*
26023437 AAATCTCAAAGGTTCTCATTTG
1 AAAT-TCAAAGATTCTCATTTG
*
26023459 AAATTCAAAGATTTTCATTTG
1 AAATTCAAAGATTCTCATTTG
* *
26023480 AAATTCAAAGACTCTCACTTG
1 AAATTCAAAGATTCTCATTTG
*
26023501 AGAATTCAAAAATTC
1 A-AATTCAAAGATTC
26023516 AAAGCTTCTC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
21 34 0.69
22 15 0.31
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.34
Consensus pattern (21 bp):
AAATTCAAAGATTCTCATTTG
Found at i:26023516 original size:30 final size:30
Alignment explanation
Indices: 26023480--26023538 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
26023470 TTTTCATTTG
26023480 AAATTCAAAGAC-TCTCACTTGAGAATTCAA
1 AAATTCAAAG-CTTCTCACTTGAGAATTCAA
* *
26023510 AAATTCAAAGCTTCTCATTTGAGGATTCA
1 AAATTCAAAGCTTCTCACTTGAGAATTCA
26023539 CAATCTTGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.31
Consensus pattern (30 bp):
AAATTCAAAGCTTCTCACTTGAGAATTCAA
Found at i:26025786 original size:23 final size:25
Alignment explanation
Indices: 26025760--26025805 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
26025750 ATGAAATTCT
*
26025760 ATTAC-ATAAAAGAAATC-CAAATC
1 ATTACTATAAAAAAAATCTCAAATC
*
26025783 ATTACTTTAAAAAAAATCTCAAA
1 ATTACTATAAAAAAAATCTCAAA
26025806 ATGACAAGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 10 0.53
25 4 0.21
ACGTcount: A:0.57, C:0.15, G:0.02, T:0.26
Consensus pattern (25 bp):
ATTACTATAAAAAAAATCTCAAATC
Found at i:26028933 original size:67 final size:66
Alignment explanation
Indices: 26028799--26028948 Score: 160
Period size: 67 Copynumber: 2.2 Consensus size: 66
26028789 CAATTAGAAA
* * *
26028799 TTTTTTTTTTTTAATTTCTAAATTCTCTACCATTTAGACATATTTAGAAATTCATTTTATTTCTC
1 TTTTTTTTTTTTTACTTATAAATTCTCTACCATTTAGACATATTTAGAAATTCATTTTATTTCTC
26028864 T
66 T
* * * * *
26028865 TTTTTTCTTTTTTTACTTATAAACTT-TCTACCATTTGGGCCTATTTAGAAATTTTATTTCTTTT
1 TTTTTT-TTTTTTTACTTATAAA-TTCTCTACCATTTAGACATATTTAGAAA-TTCATTT-TATT
26028929 TCT-T
62 TCTCT
26028933 TTGTTTTTTGTTTTTA
1 TT-TTTTTT-TTTTTA
26028949 TCTTTGGAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
66 6 0.09
67 35 0.50
68 13 0.19
69 16 0.23
ACGTcount: A:0.21, C:0.13, G:0.05, T:0.61
Consensus pattern (66 bp):
TTTTTTTTTTTTTACTTATAAATTCTCTACCATTTAGACATATTTAGAAATTCATTTTATTTCTC
T
Found at i:26029093 original size:25 final size:24
Alignment explanation
Indices: 26029036--26029093 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
26029026 AGACAAAATT
* *
26029036 TTTCACATATGAATTTTATAAAAA
1 TTTCACATTTGAAATTTATAAAAA
*
26029060 TTT-ACCATTTGAAATTTCTAAAAA
1 TTTCA-CATTTGAAATTTATAAAAA
26029084 TTTCATCATT
1 TTTCA-CATT
26029094 GGATAATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 1 0.04
24 22 0.79
25 5 0.18
ACGTcount: A:0.40, C:0.12, G:0.03, T:0.45
Consensus pattern (24 bp):
TTTCACATTTGAAATTTATAAAAA
Found at i:26029218 original size:17 final size:17
Alignment explanation
Indices: 26029179--26029220 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
26029169 AAATACTATG
*
26029179 AAAATAAATATAATAAA
1 AAAATAAAAATAATAAA
**
26029196 TTAATAAAAATAATAAA
1 AAAATAAAAATAATAAA
26029213 AAAATAAA
1 AAAATAAA
26029221 CAGGAAAATG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAATAAAAATAATAAA
Found at i:26046007 original size:2 final size:2
Alignment explanation
Indices: 26046000--26046030 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
26045990 ATAGTTTCAA
*
26046000 AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26046031 AATTCTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26046254 original size:24 final size:25
Alignment explanation
Indices: 26046227--26046273 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
26046217 AATTTTGTTT
*
26046227 ATATATTATA-ATCATTA-ATTAAAA
1 ATATATGATAGAT-ATTAGATTAAAA
26046251 ATATATGATAGATATTAGATTAA
1 ATATATGATAGATATTAGATTAA
26046274 TTTTTAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.40
Consensus pattern (25 bp):
ATATATGATAGATATTAGATTAAAA
Found at i:26049650 original size:13 final size:13
Alignment explanation
Indices: 26049619--26049643 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26049609 TTAAATTATG
26049619 TTATTTTTATATA
1 TTATTTTTATATA
26049632 TTATTTTTATAT
1 TTATTTTTATAT
26049644 CATATTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTTTTATATA
Found at i:26055407 original size:2 final size:2
Alignment explanation
Indices: 26055400--26055426 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26055390 TTGATCTTAG
26055400 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
26055427 TATTTATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:26056658 original size:18 final size:18
Alignment explanation
Indices: 26056634--26056669 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
26056624 TCCAAAATTG
*
26056634 AAAAAAAAATGGATAAAAT
1 AAAAAATAAT-GATAAAAT
26056653 AAAAAATAATGATAAAA
1 AAAAAATAATGATAAAA
26056670 GTTTAGAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (18 bp):
AAAAAATAATGATAAAAT
Found at i:26058113 original size:48 final size:48
Alignment explanation
Indices: 26058048--26058140 Score: 120
Period size: 48 Copynumber: 1.9 Consensus size: 48
26058038 TAATAAAAAT
* *
26058048 ATATTAAAATTTAAAATTTTAA-TTAGATTAA-TAAATTATTTAAATAAA
1 ATATTAAAAATTAAAA-TTTAATTTA-ATAAATTAAATTATTTAAATAAA
26058096 ATATTAAATAATT-AAATTTAATTTAATAAATTAAATTATTTAAAT
1 ATATTAAA-AATTAAAATTTAATTTAATAAATTAAATTATTTAAAT
26058141 TTGATTCAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
47 9 0.22
48 28 0.70
49 3 0.08
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (48 bp):
ATATTAAAAATTAAAATTTAATTTAATAAATTAAATTATTTAAATAAA
Found at i:26058174 original size:32 final size:30
Alignment explanation
Indices: 26058098--26058181 Score: 91
Period size: 32 Copynumber: 2.7 Consensus size: 30
26058088 TAAATAAAAT
*
26058098 ATTAAATAATTAAATTTAATTTAATAAATTAA
1 ATTAAAT--TTAAATTTAATTCAATAAATTAA
*
26058130 ATT--ATTTAAATTTGATTCAATAATTATTAA
1 ATTAAATTTAAATTTAATTCAATAA--ATTAA
*
26058160 ATTAAATTTAAATTTTATTCAA
1 ATTAAATTTAAATTTAATTCAA
26058182 ATTAAATCCG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
28 16 0.36
30 10 0.22
32 19 0.42
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (30 bp):
ATTAAATTTAAATTTAATTCAATAAATTAA
Found at i:26079229 original size:2 final size:2
Alignment explanation
Indices: 26079222--26079252 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26079212 GATCTTTTTG
26079222 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26079253 TTTAATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26083450 original size:11 final size:11
Alignment explanation
Indices: 26083397--26083457 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
26083387 ATCATGCAAA
*
26083397 AAAAAAAAACT
1 AAAAAAATACT
*
26083408 AAAAAAACAC-
1 AAAAAAATACT
* *
26083418 ACAAAAATAAAT
1 AAAAAAAT-ACT
26083430 AAATAAAATACT
1 AAA-AAAATACT
*
26083442 AAAAAAATACC
1 AAAAAAATACT
26083453 AAAAA
1 AAAAA
26083458 TGGCTCGGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
10 6 0.15
11 22 0.55
12 7 0.17
13 5 0.12
ACGTcount: A:0.77, C:0.11, G:0.00, T:0.11
Consensus pattern (11 bp):
AAAAAAATACT
Found at i:26084333 original size:5 final size:6
Alignment explanation
Indices: 26084318--26084423 Score: 63
Period size: 6 Copynumber: 17.5 Consensus size: 6
26084308 TAAGAAACCA
* * * *
26084318 AAAAAT AAAAAT AAAAAC AAAAAC GAAAAT AAGACAAT AAAAAAT AATAA-
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA-A-AAT -AAAAAT AAAAAT
** * * * * *
26084368 AAAACC AAAAAT -AAAAT AAAATT AATAAT TAAAAT AAAATT AAAACT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
26084415 AAAACT AAA
1 AAAAAT AAA
26084424 TTGGGCCATT
Statistics
Matches: 78, Mismatches: 17, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
5 8 0.10
6 60 0.77
7 4 0.05
8 4 0.05
9 2 0.03
ACGTcount: A:0.75, C:0.07, G:0.02, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:26084351 original size:39 final size:37
Alignment explanation
Indices: 26084308--26084386 Score: 88
Period size: 39 Copynumber: 2.1 Consensus size: 37
26084298 AATTTCAAAC
26084308 TAAGA-AACCAAAAAATAAAAATAAAAACAAAAACGAAAA
1 TAAGACAA-CAAAAAATAAAAA-AAAAACAAAAA-GAAAA
* * * *
26084347 TAAGACAATAAAAAATAATAAAAAACCAAAAATAAAA
1 TAAGACAACAAAAAATAAAAAAAAAACAAAAAGAAAA
26084384 TAA
1 TAA
26084387 AATTAATAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
37 7 0.20
38 10 0.29
39 16 0.46
40 2 0.06
ACGTcount: A:0.76, C:0.09, G:0.04, T:0.11
Consensus pattern (37 bp):
TAAGACAACAAAAAATAAAAAAAAAACAAAAAGAAAA
Found at i:26084728 original size:41 final size:40
Alignment explanation
Indices: 26084652--26084881 Score: 286
Period size: 41 Copynumber: 5.7 Consensus size: 40
26084642 ATAGTGGCGA
* *
26084652 AACA-ACTTTGAAAAAATAAATAGCTCTTCTGAATAGAGAC
1 AACAGACTTTG-AAAAATAAATAGCTCCTCTGAATAGAGGC
* * *
26084692 AACACGACTTTGAAAAATAAATGGCTCCTCTAAATAGAGGT
1 AACA-GACTTTGAAAAATAAATAGCTCCTCTGAATAGAGGC
*
26084733 AACACGACTTTGAAAAAATAAATGGCTCCTCTGAATAGAGGC
1 AACA-GACTTTG-AAAAATAAATAGCTCCTCTGAATAGAGGC
*
26084775 AATAGAACTTTGAAAAATAAATAGCTCC-CT-AATAGAGGC
1 AACAG-ACTTTGAAAAATAAATAGCTCCTCTGAATAGAGGC
*
26084814 AACAGAACTTTGAAAAATAAATAGCTCATCTGAATAGAGGC
1 AACAG-ACTTTGAAAAATAAATAGCTCCTCTGAATAGAGGC
* *
26084855 AACAAAACTTTAAAAAATAAATAGCTC
1 AAC-AGACTTTGAAAAATAAATAGCTC
26084882 TTCGACAATC
Statistics
Matches: 170, Mismatches: 13, Indels: 13
0.87 0.07 0.07
Matches are distributed among these distances:
39 35 0.21
40 8 0.05
41 84 0.49
42 43 0.25
ACGTcount: A:0.46, C:0.16, G:0.15, T:0.23
Consensus pattern (40 bp):
AACAGACTTTGAAAAATAAATAGCTCCTCTGAATAGAGGC
Found at i:26084747 original size:83 final size:80
Alignment explanation
Indices: 26084655--26084881 Score: 305
Period size: 83 Copynumber: 2.8 Consensus size: 80
26084645 GTGGCGAAAC
* * *
26084655 AACTTTGAAAAAATAAATAGCTCTTCTGAATAGAGACAACACGACTTTGAAAAATAAATGGCTCC
1 AACTTTGAAAAAATAAATAGCTCATCTGAATAGAGGCAACA-GACTTTGAAAAATAAATAGCTCC
*
26084720 TCTAAATAGAGGTAACACG
65 -CT-AATAGAGGCAACA-G
* * *
26084739 -ACTTTGAAAAAATAAATGGCTCCTCTGAATAGAGGCAATAGAACTTTGAAAAATAAATAGCTCC
1 AACTTTGAAAAAATAAATAGCTCATCTGAATAGAGGCAACAG-ACTTTGAAAAATAAATAGCTCC
26084803 CTAATAGAGGCAACAG
65 CTAATAGAGGCAACAG
* *
26084819 AACTTTG-AAAAATAAATAGCTCATCTGAATAGAGGCAACAAAACTTTAAAAAATAAATAGCTC
1 AACTTTGAAAAAATAAATAGCTCATCTGAATAGAGGCAAC-AGACTTTGAAAAATAAATAGCTC
26084882 TTCGACAATC
Statistics
Matches: 129, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
80 50 0.39
81 19 0.15
82 3 0.02
83 57 0.44
ACGTcount: A:0.46, C:0.16, G:0.15, T:0.23
Consensus pattern (80 bp):
AACTTTGAAAAAATAAATAGCTCATCTGAATAGAGGCAACAGACTTTGAAAAATAAATAGCTCCC
TAATAGAGGCAACAG
Found at i:26085158 original size:21 final size:22
Alignment explanation
Indices: 26085134--26085188 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
26085124 CTTAAAACTT
*
26085134 AAAGATTTTTC-TTTGAAATTC
1 AAAGATTTTTCATTCGAAATTC
* *
26085155 AAAGA-CTCTCATTCGAAATTC
1 AAAGATTTTTCATTCGAAATTC
26085176 AAAGA-TTTTCATT
1 AAAGATTTTTCATT
26085189 AAAAAGTTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (22 bp):
AAAGATTTTTCATTCGAAATTC
Found at i:26086088 original size:17 final size:17
Alignment explanation
Indices: 26086065--26086110 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
26086055 AAGTCTTTCT
*
26086065 TTTTTTTTCTTTCTTTAGT
1 TTTTTTTT-TTTCTTTA-A
*
26086084 TTTTTTTTTTTTTTTAA
1 TTTTTTTTTTTCTTTAA
26086101 TTTTTTTTTT
1 TTTTTTTTTT
26086111 CAAGGATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 10 0.40
18 7 0.28
19 8 0.32
ACGTcount: A:0.07, C:0.04, G:0.02, T:0.87
Consensus pattern (17 bp):
TTTTTTTTTTTCTTTAA
Found at i:26086109 original size:18 final size:18
Alignment explanation
Indices: 26086064--26086110 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
26086054 TAAGTCTTTC
*
26086064 TTTTTTTTTCTTTCTTTAG
1 TTTTTTTTT-TTTCTTTAA
*
26086083 TTTTTTTTTTTTTTTTAA
1 TTTTTTTTTTTTCTTTAA
26086101 TTTTTTTTTT
1 TTTTTTTTTT
26086111 CAAGGATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 17 0.65
19 9 0.35
ACGTcount: A:0.06, C:0.04, G:0.02, T:0.87
Consensus pattern (18 bp):
TTTTTTTTTTTTCTTTAA
Found at i:26097015 original size:25 final size:25
Alignment explanation
Indices: 26096987--26097037 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
26096977 TTTCACCCAA
26096987 AAATTTTATAAAAATTT-ACCATTGG
1 AAATTTT-TAAAAATTTCACCATTGG
* *
26097012 AAATTTTTATAAATTTCATCATTGG
1 AAATTTTTAAAAATTTCACCATTGG
26097037 A
1 A
26097038 TAAAATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (25 bp):
AAATTTTTAAAAATTTCACCATTGG
Found at i:26097631 original size:31 final size:31
Alignment explanation
Indices: 26097596--26097654 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
26097586 TGGAGATATC
* *
26097596 GTCGAAAAATTCAATCGGTGCCAAAAAAATA
1 GTCGAAAAATTCAACCAGTGCCAAAAAAATA
26097627 GTCGAAAAATTCAACCAGTGCCAAAAAA
1 GTCGAAAAATTCAACCAGTGCCAAAAAA
26097655 TTTTATTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.49, C:0.19, G:0.15, T:0.17
Consensus pattern (31 bp):
GTCGAAAAATTCAACCAGTGCCAAAAAAATA
Found at i:26098039 original size:6 final size:6
Alignment explanation
Indices: 26098028--26098124 Score: 63
Period size: 6 Copynumber: 15.7 Consensus size: 6
26098018 CAAGAAACCA
* * * **
26098028 AAAAAT AAAAATT AAAAAC GAAAAT AAGATAAT AAAAAT AATAA- AAAACC
1 AAAAAT AAAAA-T AAAAAT AAAAAT AA-A-AAT AAAAAT AAAAAT AAAAAT
* * *
26098078 AAAAAT -AAAAT AAATAAT AATAAT AATAAAT AAAATT AAAACT AAAA
1 AAAAAT AAAAAT AAA-AAT AAAAAT AA-AAAT AAAAAT AAAAAT AAAA
26098125 TTGAGCCATG
Statistics
Matches: 71, Mismatches: 13, Indels: 14
0.72 0.13 0.14
Matches are distributed among these distances:
5 8 0.11
6 40 0.56
7 18 0.25
8 5 0.07
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (6 bp):
AAAAAT
Found at i:26098070 original size:9 final size:9
Alignment explanation
Indices: 26098056--26098107 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
26098046 CGAAAATAAG
26098056 ATAATAAAA
1 ATAATAAAA
26098065 ATAATAAAA
1 ATAATAAAA
**
26098074 A-ACCAAAA
1 ATAATAAAA
26098082 ATAA-AATAA
1 ATAATAA-AA
*
26098091 ATAATAATA
1 ATAATAAAA
26098100 ATAATAAA
1 ATAATAAA
26098108 TAAAATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
8 8 0.23
9 25 0.71
10 2 0.06
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (9 bp):
ATAATAAAA
Found at i:26098123 original size:16 final size:14
Alignment explanation
Indices: 26098079--26098123 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 14
26098069 TAAAAAACCA
26098079 AAAATAAAATAAAT
1 AAAATAAAATAAAT
26098093 AATAATAATAATAAAT
1 AA-AATAA-AATAAAT
26098109 AAAATTAAAACTAAA
1 AAAA-TAAAA-TAAA
26098124 ATTGAGCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 2 0.07
15 9 0.33
16 16 0.59
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:26100196 original size:23 final size:24
Alignment explanation
Indices: 26100151--26100201 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
26100141 AAAATAGGAA
*
26100151 TATATTCATCATTTTTTAGATATT
1 TATATTCATAATTTTTTAGATATT
26100175 TATATTCA-AATTTATTTA-ATATT
1 TATATTCATAATTT-TTTAGATATT
26100198 TATA
1 TATA
26100202 ATATTTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (24 bp):
TATATTCATAATTTTTTAGATATT
Found at i:26100251 original size:21 final size:18
Alignment explanation
Indices: 26100218--26100260 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 18
26100208 GAATTTATTT
*
26100218 AAATATCTATTTAAGTTTA
1 AAATATCTATTTAA-ATTA
26100237 AAATATCATTATTTAAATTA
1 AAATATC--TATTTAAATTA
26100257 AAAT
1 AAAT
26100261 CCATTTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 7 0.33
21 7 0.33
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (18 bp):
AAATATCTATTTAAATTA
Found at i:26105340 original size:12 final size:12
Alignment explanation
Indices: 26105325--26105356 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26105315 AAAGGGGAGA
26105325 ATTTGGTGGCTG
1 ATTTGGTGGCTG
26105337 ATTTGGTGGCTG
1 ATTTGGTGGCTG
*
26105349 ATTGGGTG
1 ATTTGGTG
26105357 ACTAGATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.06, G:0.44, T:0.41
Consensus pattern (12 bp):
ATTTGGTGGCTG
Found at i:26110419 original size:19 final size:19
Alignment explanation
Indices: 26110392--26110428 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26110382 GCAATATTTC
* *
26110392 ATTATTAATATGAATTATT
1 ATTAATAATATAAATTATT
26110411 ATTAATAATATAAATTAT
1 ATTAATAATATAAATTAT
26110429 AGAATATTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
ATTAATAATATAAATTATT
Found at i:26120471 original size:5 final size:5
Alignment explanation
Indices: 26120461--26120498 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
26120451 TTTATCAGCA
26120461 CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTT
1 CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTT
26120499 CTGTAAGACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (5 bp):
CTTTC
Found at i:26120790 original size:5 final size:5
Alignment explanation
Indices: 26120780--26120809 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
26120770 TTTAATTGGA
26120780 AAAAT AAAAT -AAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
26120810 TATAAGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:26120795 original size:9 final size:9
Alignment explanation
Indices: 26120781--26120814 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
26120771 TTAATTGGAA
26120781 AAATAAAAT
1 AAATAAAAT
26120790 AAATAAAAT
1 AAATAAAAT
26120799 AAAATAAAAT
1 -AAATAAAAT
*
26120809 ATATAA
1 AAATAA
26120815 GAAAAAGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AAATAAAAT
Found at i:26120799 original size:14 final size:14
Alignment explanation
Indices: 26120780--26120806 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26120770 TTTAATTGGA
26120780 AAAATAAAATAAAT
1 AAAATAAAATAAAT
26120794 AAAATAAAATAAA
1 AAAATAAAATAAA
26120807 ATATATAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:26120963 original size:31 final size:31
Alignment explanation
Indices: 26120920--26120980 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
26120910 AGATTTTAAT
26120920 AATAATTATATATAATTTA-ATAAA-ATAAAA
1 AATAATTATATAT-ATTTATATAAATATAAAA
* *
26120950 AATATATTTTATATTTTTATATAAATATAAA
1 AATA-ATTATATATATTTATATAAATATAAA
26120981 TTATAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 8 0.31
31 13 0.50
32 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (31 bp):
AATAATTATATATATTTATATAAATATAAAA
Found at i:26121023 original size:13 final size:12
Alignment explanation
Indices: 26120973--26121023 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
26120963 TTTTTATATA
26120973 AATATAAATTAT
1 AATATAAATTAT
*
26120985 AATATAAATTTTT
1 AATATAAA-TTAT
* *
26120998 TATATAAA-AAT
1 AATATAAATTAT
26121009 AATATAAATGTAT
1 AATATAAAT-TAT
26121022 AA
1 AA
26121024 ATTTTAGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
11 8 0.27
12 8 0.27
13 14 0.47
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (12 bp):
AATATAAATTAT
Found at i:26126727 original size:65 final size:65
Alignment explanation
Indices: 26126626--26126757 Score: 221
Period size: 65 Copynumber: 2.0 Consensus size: 65
26126616 AACTATTTAC
26126626 TTGATTGACTTTTCTGCTTCATTGTGTGGTGAATTTATAACAAAAATCAAATTTCAGTTTGTTAT
1 TTGATTGACTTTTCTGCTTCATTGTGTGGTGAATTTATAACAAAAATCAAATTTCAGTTTGTTAT
* * *
26126691 TTGATTGA-TTATTCTGCTTCATTGTGTGGTGAATTTATAACAATAGTCAAATTTCAGTTTTTTA
1 TTGATTGACTT-TTCTGCTTCATTGTGTGGTGAATTTATAACAAAAATCAAATTTCAGTTTGTTA
26126755 T
65 T
26126756 TT
1 TT
26126758 TTTATTACAG
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
64 2 0.03
65 61 0.97
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.48
Consensus pattern (65 bp):
TTGATTGACTTTTCTGCTTCATTGTGTGGTGAATTTATAACAAAAATCAAATTTCAGTTTGTTAT
Found at i:26129174 original size:2 final size:2
Alignment explanation
Indices: 26129167--26129197 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26129157 GTCTAAACGG
26129167 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26129198 GAAAGATGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26130863 original size:17 final size:18
Alignment explanation
Indices: 26130843--26130879 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
26130833 CACCTTTACC
26130843 CACCATCAA-AATTTAAT
1 CACCATCAACAATTTAAT
26130860 CACCATCAACAATTTAAT
1 CACCATCAACAATTTAAT
26130878 CA
1 CA
26130880 TGATGACTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (18 bp):
CACCATCAACAATTTAAT
Found at i:26132935 original size:1 final size:1
Alignment explanation
Indices: 26132931--26132955 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
26132921 TGTGTTTTTG
26132931 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
26132956 CAACCATAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:26136501 original size:84 final size:83
Alignment explanation
Indices: 26136350--26136515 Score: 278
Period size: 84 Copynumber: 2.0 Consensus size: 83
26136340 CAATAGAGGC
*
26136350 TGGATTTCCACATAACTCCTCTATCAAACTATGCTAAAGTCCTGACCTGAAATCATATACTAAAA
1 TGGATTTCCACATAACTCCTCTATCAAACTATGCTAAAGTCCTGACCTGAAATCATACACTAAAA
26136415 GCAGCATTCTTGGAAGAT
66 GCAGCATTCTTGGAAGAT
* * * *
26136433 TGGATTTCCACATAACTCTTCTATCAAACCTATGCTAAAGTCCTGACCTGAAATCATGCATTACA
1 TGGATTTCCACATAACTCCTCTATCAAA-CTATGCTAAAGTCCTGACCTGAAATCATACACTAAA
26136498 AGCAGCATTCTTGGAAGA
65 AGCAGCATTCTTGGAAGA
26136516 ATATGTTAAG
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
83 27 0.35
84 50 0.65
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (83 bp):
TGGATTTCCACATAACTCCTCTATCAAACTATGCTAAAGTCCTGACCTGAAATCATACACTAAAA
GCAGCATTCTTGGAAGAT
Found at i:26138771 original size:33 final size:33
Alignment explanation
Indices: 26138729--26138793 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
26138719 ACTTCCAGAG
*
26138729 AGCTCACTCTACGCCACAAAATACAGTATCTCA
1 AGCTCACTCTACCCCACAAAATACAGTATCTCA
26138762 AGCTCACTCTACCCCACAAAATACAGTATCTC
1 AGCTCACTCTACCCCACAAAATACAGTATCTC
26138794 TAGAAATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.35, G:0.08, T:0.22
Consensus pattern (33 bp):
AGCTCACTCTACCCCACAAAATACAGTATCTCA
Found at i:26145179 original size:29 final size:31
Alignment explanation
Indices: 26145137--26145199 Score: 94
Period size: 29 Copynumber: 2.1 Consensus size: 31
26145127 AAGTACAGTA
*
26145137 TCAAAAGAAAACTATG-GCCAAA-AAAATAT
1 TCAAAAGAAAACTATGAGCAAAATAAAATAT
*
26145166 TCAAAAGAAAACTATGATCAAAATAAAATAT
1 TCAAAAGAAAACTATGAGCAAAATAAAATAT
26145197 TCA
1 TCA
26145200 GAAATTACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.59, C:0.13, G:0.08, T:0.21
Consensus pattern (31 bp):
TCAAAAGAAAACTATGAGCAAAATAAAATAT
Found at i:26145186 original size:17 final size:16
Alignment explanation
Indices: 26145137--26145193 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 16
26145127 AAGTACAGTA
26145137 TCAAAAGAAAACTATG
1 TCAAAAGAAAACTATG
* *
26145153 GCCAAA-AAAA-TAT-
1 TCAAAAGAAAACTATG
26145166 TCAAAAGAAAACTATG
1 TCAAAAGAAAACTATG
*
26145182 ATCAAAATAAAA
1 -TCAAAAGAAAA
26145194 TATTCAGAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
13 4 0.12
14 7 0.22
15 7 0.22
16 4 0.12
17 10 0.31
ACGTcount: A:0.61, C:0.12, G:0.09, T:0.18
Consensus pattern (16 bp):
TCAAAAGAAAACTATG
Found at i:26147158 original size:8 final size:8
Alignment explanation
Indices: 26147145--26147178 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
26147135 CCTTCAAAAT
*
26147145 CCACACAA
1 CCACACAC
26147153 CCACACAC
1 CCACACAC
26147161 CCACACAC
1 CCACACAC
*
26147169 CCACCCAC
1 CCACACAC
26147177 CC
1 CC
26147179 CCCCCACCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.35, C:0.65, G:0.00, T:0.00
Consensus pattern (8 bp):
CCACACAC
Found at i:26157252 original size:53 final size:53
Alignment explanation
Indices: 26157166--26157271 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
26157156 ACATTACAAT
*
26157166 CAGCTTTATGGCGATAGCATATGTCAAAATATTATAAATCTTACAACAGCCTA
1 CAGCTTTATGGCAATAGCATATGTCAAAATATTATAAATCTTACAACAGCCTA
* * * *
26157219 CAGCTTTATTGCAATAGCATATGTCATATTATTATAAATCTTACAACATCCTA
1 CAGCTTTATGGCAATAGCATATGTCAAAATATTATAAATCTTACAACAGCCTA
26157272 AGTGCAGATT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (53 bp):
CAGCTTTATGGCAATAGCATATGTCAAAATATTATAAATCTTACAACAGCCTA
Found at i:26161227 original size:61 final size:62
Alignment explanation
Indices: 26161156--26161280 Score: 209
Period size: 62 Copynumber: 2.0 Consensus size: 62
26161146 GTAGAAAATT
*
26161156 TTCCTTTCTCGTTATCAATAATT-GGTTTGTGAACAATACGTAAATTTAATATAAAATCATTG
1 TTCCTTTCTCGTTATCAATAATTGGGTTGGTGAACAATACGTAAATTTAATAT-AAATCATTG
*
26161218 TTCC-TTCTCGTTATCAATAATTGGGTTGGTGAACAATACGTAAATTTAATATAAATTATTG
1 TTCCTTTCTCGTTATCAATAATTGGGTTGGTGAACAATACGTAAATTTAATATAAATCATTG
26161279 TT
1 TT
26161281 AAAATTTTAT
Statistics
Matches: 60, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
61 28 0.47
62 32 0.53
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (62 bp):
TTCCTTTCTCGTTATCAATAATTGGGTTGGTGAACAATACGTAAATTTAATATAAATCATTG
Found at i:26166512 original size:24 final size:22
Alignment explanation
Indices: 26166483--26166527 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
26166473 TTTAATTAAT
26166483 TATTTAATTATATATATTTATATA
1 TATTTAATT-T-TATATTTATATA
26166507 TATTTAATTTTATATTTATAT
1 TATTTAATTTTATATTTATAT
26166528 TAAAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 11 0.52
23 1 0.05
24 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TATTTAATTTTATATTTATATA
Found at i:26166574 original size:23 final size:20
Alignment explanation
Indices: 26166521--26166564 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
26166511 TAATTTTATA
26166521 TTTATA-TTAAAAATAATAT
1 TTTATATTTAAAAATAATAT
26166540 TTTATATTTAAAAATAATAT
1 TTTATATTTAAAAATAATAT
26166560 TTTAT
1 TTTAT
26166565 TAATTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTATATTTAAAAATAATAT
Found at i:26166732 original size:16 final size:16
Alignment explanation
Indices: 26166713--26166751 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
26166703 ATTATTTAAT
*
26166713 TATATATATTTTTATA
1 TATATATAATTTTATA
*
26166729 TATATTTAATTTTATA
1 TATATATAATTTTATA
*
26166745 TTTATAT
1 TATATAT
26166752 TAAAAATAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATATAATTTTATA
Found at i:26166798 original size:23 final size:20
Alignment explanation
Indices: 26166745--26166788 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
26166735 TAATTTTATA
26166745 TTTATA-TTAAAAATAATAT
1 TTTATATTTAAAAATAATAT
26166764 TTTATATTTAAAAATAATAT
1 TTTATATTTAAAAATAATAT
26166784 TTTAT
1 TTTAT
26166789 TAATTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTATATTTAAAAATAATAT
Done.