Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 128 of 130
Found at i:26166840 original size:25 final size:25
Alignment explanation
Indices: 26166812--26166862 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
26166802 AATCGAATAT
* *
26166812 AATTTT-ATATAATATTAAATAAAAA
1 AATTTTAATATAAAAAT-AATAAAAA
26166837 AATTTTAATATAAAAATAATAAAAA
1 AATTTTAATATAAAAATAATAAAAA
26166862 A
1 A
26166863 TTTATCAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
AATTTTAATATAAAAATAATAAAAA
Found at i:26189510 original size:4 final size:4
Alignment explanation
Indices: 26189498--26189592 Score: 54
Period size: 4 Copynumber: 24.0 Consensus size: 4
26189488 TTATTTTAAT
** * * **
26189498 TAAA TTAAA TAAA TAAA TTTA TAAA T-AT TAAA TAAA TATA TTTA TAAA
1 TAAA -TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
* * *
26189546 CATA T-AA -AAA TAAA TAAA T-TA TAAA TAAA TAAA TTTAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA --TAAA TAAA TAAA
26189593 CTTAAACGAA
Statistics
Matches: 68, Mismatches: 16, Indels: 13
0.70 0.16 0.13
Matches are distributed among these distances:
3 7 0.10
4 53 0.78
5 4 0.06
6 4 0.06
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (4 bp):
TAAA
Found at i:26189518 original size:23 final size:23
Alignment explanation
Indices: 26189501--26189570 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
26189491 TTTTAATTAA
*
26189501 ATTAAATAAATAAATTTATAAAT
1 ATTAAATAAATAAATTTATAAAC
*
26189524 ATTAAATAAATATATTTATAAAC
1 ATTAAATAAATAAATTTATAAAC
26189547 ATATAAAAATAAATAAA-TTATAAA
1 AT-T--AAATAAATAAATTTATAAA
26189571 TAAATAAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
23 23 0.56
24 1 0.02
25 7 0.17
26 10 0.24
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (23 bp):
ATTAAATAAATAAATTTATAAAC
Found at i:26189567 original size:25 final size:24
Alignment explanation
Indices: 26189504--26189589 Score: 77
Period size: 25 Copynumber: 3.5 Consensus size: 24
26189494 TAATTAAATT
*
26189504 AAATAAATAAATT-TATAAATAT-T
1 AAATAAATAAATTATA-AAATATAA
*
26189527 AAATAAATATATTTATAAACATATAA
1 AAATAAATA-AATTATAAA-ATATAA
*
26189553 AAATAAATAAATTATAAATAAATAA
1 AAATAAATAAATTATAAA-ATATAA
**
26189578 ATTTAAATAAAT
1 AAATAAATAAAT
26189590 AAACTTAAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
23 9 0.17
24 5 0.10
25 29 0.56
26 9 0.17
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (24 bp):
AAATAAATAAATTATAAAATATAA
Found at i:26189586 original size:14 final size:14
Alignment explanation
Indices: 26189498--26189598 Score: 83
Period size: 14 Copynumber: 7.7 Consensus size: 14
26189488 TTATTTTAAT
26189498 TAAA-TTAAATAAA
1 TAAATTTAAATAAA
26189511 TAAATTT--ATAAA
1 TAAATTTAAATAAA
26189523 T--A-TTAAATAAA
1 TAAATTTAAATAAA
*
26189534 TATATTT--ATAAA
1 TAAATTTAAATAAA
* * **
26189546 CATATAAAAATAAA
1 TAAATTTAAATAAA
26189560 TAAATTATAAATAAA
1 TAAATT-TAAATAAA
26189575 TAAATTTAAATAAA
1 TAAATTTAAATAAA
*
26189589 TAAACTTAAA
1 TAAATTTAAA
26189599 CGAATATAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
9 2 0.03
10 1 0.01
11 6 0.08
12 15 0.21
13 5 0.07
14 29 0.41
15 13 0.18
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (14 bp):
TAAATTTAAATAAA
Found at i:26201671 original size:18 final size:19
Alignment explanation
Indices: 26201648--26201684 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
26201638 ATTATTGCAT
*
26201648 TTTTTTAATTAT-TTTTAA
1 TTTTTTAAATATATTTTAA
26201666 TTTTTTAAATATATTTTAA
1 TTTTTTAAATATATTTTAA
26201685 CAGCACCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTTAAATATATTTTAA
Found at i:26207019 original size:37 final size:37
Alignment explanation
Indices: 26206964--26207038 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
26206954 GACTAGGGAC
*
26206964 TAGAAACTGAAGGTTGGTTGGCACAAACTTATTTGAT
1 TAGAAACTGAAGGATGGTTGGCACAAACTTATTTGAT
26207001 TAGAAACTGAAGGATGGTTGGCACAAACTTATTTGAT
1 TAGAAACTGAAGGATGGTTGGCACAAACTTATTTGAT
26207038 T
1 T
26207039 TTAATAAAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.32
Consensus pattern (37 bp):
TAGAAACTGAAGGATGGTTGGCACAAACTTATTTGAT
Found at i:26210551 original size:19 final size:20
Alignment explanation
Indices: 26210527--26210588 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 20
26210517 AATTCATGAA
*
26210527 TTTAATTGAATATTTA-TAT
1 TTTAATTAAATATTTATTAT
26210546 TTTAA-TAAATATTTTATTAT
1 TTTAATTAAATA-TTTATTAT
*
26210566 TTT-ATTAAAAATTTATTAT
1 TTTAATTAAATATTTATTAT
26210585 TTTA
1 TTTA
26210589 TTTATATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
18 5 0.14
19 21 0.57
20 11 0.30
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTAATTAAATATTTATTAT
Found at i:26211310 original size:32 final size:32
Alignment explanation
Indices: 26211274--26211334 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
26211264 TGTTAAATAT
26211274 TTATTTAAATATAAATCAAAATTAAAAAAAAA
1 TTATTTAAATATAAATCAAAATTAAAAAAAAA
* * *
26211306 TTATTTGAGTATAAATTAAAATTAAAAAA
1 TTATTTAAATATAAATCAAAATTAAAAAA
26211335 TTACTGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (32 bp):
TTATTTAAATATAAATCAAAATTAAAAAAAAA
Found at i:26228264 original size:12 final size:12
Alignment explanation
Indices: 26228247--26228273 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26228237 TAAGTTAATT
26228247 AATAATTGAAAA
1 AATAATTGAAAA
26228259 AATAATTGAAAA
1 AATAATTGAAAA
26228271 AAT
1 AAT
26228274 CTCACCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (12 bp):
AATAATTGAAAA
Found at i:26230420 original size:36 final size:36
Alignment explanation
Indices: 26230352--26230421 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
26230342 GTAACTCCCT
* ** *
26230352 TTGCTCAACACTTTCTGGTGGAGAGGACTGCTCATC
1 TTGCTCAACACTCTCTGGTAAAGAAGACTGCTCATC
* *
26230388 TTGCTTAACACTCTCTGGTAAAGAAGATTGCTCA
1 TTGCTCAACACTCTCTGGTAAAGAAGACTGCTCA
26230422 ATCTGCACAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (36 bp):
TTGCTCAACACTCTCTGGTAAAGAAGACTGCTCATC
Found at i:26232862 original size:165 final size:166
Alignment explanation
Indices: 26232590--26232923 Score: 571
Period size: 165 Copynumber: 2.0 Consensus size: 166
26232580 ATAGGTTTTC
* *
26232590 AAATTGAATAATTTAATGCTGTTAATTTTATCGTGAAACCTGTATCACTCTTCATGGTCTTAAAT
1 AAATTGAATAATTTAATGCTATTAATTTTATCGTGAAACCTGTATCACTCTTCATGATCTTAAAT
* *
26232655 AGAATTTACTTCTATCTTGGGTTACTTTTGTATCGATATCTCAAATTTACCCTTACTCTGATATC
66 AGAATTTACTTCTATCTTGGGTTACTTTTGTATCGATATCTCAAATTTACCCTTACTCTAATACC
* * * *
26232720 ACTTATTGGGCCTAAAGTAGCAAACACAA-AACGTA
131 ACTTATTAGACCTAAAGCAACAAACACAATAACGTA
*
26232755 AAATTGAATAATTTAATGCTATTAATTTTATCGTGAAACCTGTATTACTCTTCATGATCTTAAAT
1 AAATTGAATAATTTAATGCTATTAATTTTATCGTGAAACCTGTATCACTCTTCATGATCTTAAAT
26232820 AGAATTTACTTCTATCTTGGGTTACTTTTGTATCGATATCTCAAATTTACCCTTACTCTAATACC
66 AGAATTTACTTCTATCTTGGGTTACTTTTGTATCGATATCTCAAATTTACCCTTACTCTAATACC
*
26232885 ACTTATTAGACCTAAAGCAACAAACACAATAATGTA
131 ACTTATTAGACCTAAAGCAACAAACACAATAACGTA
26232921 AAA
1 AAA
26232924 ATAATATATT
Statistics
Matches: 158, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
165 150 0.95
166 8 0.05
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (166 bp):
AAATTGAATAATTTAATGCTATTAATTTTATCGTGAAACCTGTATCACTCTTCATGATCTTAAAT
AGAATTTACTTCTATCTTGGGTTACTTTTGTATCGATATCTCAAATTTACCCTTACTCTAATACC
ACTTATTAGACCTAAAGCAACAAACACAATAACGTA
Found at i:26235723 original size:13 final size:14
Alignment explanation
Indices: 26235701--26235728 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26235691 GGCATCTTTC
26235701 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
26235715 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
26235729 AAATTTAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (14 bp):
TTTTCTTTTTTTTT
Found at i:26235894 original size:29 final size:29
Alignment explanation
Indices: 26235852--26235912 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
26235842 TCTAATACTA
*
26235852 TATAATTGATTCTATGTCAGATGCATCAT
1 TATAATTGATTCTAAGTCAGATGCATCAT
* *
26235881 TATAATTGATTCTAAGTCAGATTCATCTT
1 TATAATTGATTCTAAGTCAGATGCATCAT
26235910 TAT
1 TAT
26235913 CTATAGTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.44
Consensus pattern (29 bp):
TATAATTGATTCTAAGTCAGATGCATCAT
Found at i:26236055 original size:3 final size:3
Alignment explanation
Indices: 26236047--26236098 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
26236037 CACCCCCATT
26236047 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26236095 ATA A
1 ATA A
26236099 GAAGAAGGTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:26243027 original size:2 final size:2
Alignment explanation
Indices: 26243020--26243056 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
26243010 TATTGCCCAC
26243020 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
26243057 ATTCTCATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:26253309 original size:22 final size:22
Alignment explanation
Indices: 26253281--26253326 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
26253271 AATTTGCTCC
* *
26253281 ATGTACATATTAAGAAAATCAT
1 ATGTACATAATAAAAAAATCAT
26253303 ATGTACATAATAAAAAAATCAT
1 ATGTACATAATAAAAAAATCAT
26253325 AT
1 AT
26253327 ACGATGAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (22 bp):
ATGTACATAATAAAAAAATCAT
Found at i:26254993 original size:2 final size:2
Alignment explanation
Indices: 26254986--26255020 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26254976 TTCGAGTAAG
26254986 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26255021 GGTCCCATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26256924 original size:4 final size:4
Alignment explanation
Indices: 26256910--26256945 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
26256900 TTATTAAAAG
26256910 ATTA A-TA ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
26256946 ATGAAATATC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 28 0.90
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (4 bp):
ATTA
Found at i:26257535 original size:24 final size:24
Alignment explanation
Indices: 26257487--26257558 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
26257477 ACATTATTAA
*
26257487 TTAATAAATTTAAA-ATTTTAGAATT
1 TTAA-AAA-TTAAATATTTTAAAATT
* * *
26257512 ATTAAAAATAAATATTTTAAAATT
1 TTAAAAATTAAATATTTTAAAATT
* *
26257536 TTAAAAATTAATTATATTAAAAT
1 TTAAAAATTAAATATTTTAAAAT
26257559 AAATTAATGA
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
23 4 0.11
24 31 0.84
25 2 0.05
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (24 bp):
TTAAAAATTAAATATTTTAAAATT
Found at i:26282751 original size:2 final size:2
Alignment explanation
Indices: 26282744--26282778 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
26282734 ACGTGTTATA
*
26282744 TG TG TG TG TT TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
26282779 ATATATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54
Consensus pattern (2 bp):
TG
Found at i:26282783 original size:2 final size:2
Alignment explanation
Indices: 26282778--26282802 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26282768 TGTGTGTGTG
26282778 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26282803 GAAAGGTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26283825 original size:5 final size:5
Alignment explanation
Indices: 26283815--26283852 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
26283805 CAGCCCCCCT
* *
26283815 CCGAG CCGAG CCGAG CCGAG CCGAG CTGAG CCAAG CCG
1 CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCG
26283853 CCAAGCCGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.39, G:0.37, T:0.03
Consensus pattern (5 bp):
CCGAG
Found at i:26284215 original size:59 final size:58
Alignment explanation
Indices: 26284065--26284286 Score: 259
Period size: 59 Copynumber: 3.7 Consensus size: 58
26284055 AAAATTTCAA
*
26284065 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCC
1 AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTT---AG-AAAATAAATTTTC
* *
26284128 AAAAAAAATATTTTTGGGAAAAAATTGAAAGTATCAATTTTTCTTAG-AAATAAATTTTC
1 -AAAAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTTC
** * *
26284187 AAAAAAAGGGTTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTT-GAAAATCAAAATTTC
1 AAAAAAA-TATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAAT-AAATTTTC
*
26284247 CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTT
26284287 TCCTACAAAA
Statistics
Matches: 139, Mismatches: 13, Indels: 17
0.82 0.08 0.10
Matches are distributed among these distances:
58 8 0.06
59 72 0.52
60 16 0.12
61 2 0.01
63 3 0.02
64 38 0.27
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (58 bp):
AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTTC
Found at i:26288145 original size:6 final size:6
Alignment explanation
Indices: 26288130--26288169 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
26288120 AAAAGATGAT
26288130 GAAAAA -AAAAA GAAAAA GAAAAA G--AAA GAAAGAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAA-AA GAAAAA
26288170 ATGAAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
4 4 0.13
5 5 0.17
6 15 0.50
7 6 0.20
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:26288150 original size:17 final size:17
Alignment explanation
Indices: 26288115--26288170 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
26288105 GAAGAATGAG
** *
26288115 AAAAAAAAAGATGATGA
1 AAAAAAAAAGAAAAAGA
26288132 AAAAAAAAAGAAAAAG-
1 AAAAAAAAAGAAAAAGA
*
26288148 AAAAAGAAAGAAAGAAGA
1 AAAAAAAAAGAAA-AAGA
26288166 AAAAA
1 AAAAA
26288171 TGAAAAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
16 12 0.36
17 16 0.48
18 5 0.15
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAGA
Found at i:26288151 original size:16 final size:16
Alignment explanation
Indices: 26288113--26288196 Score: 64
Period size: 16 Copynumber: 5.2 Consensus size: 16
26288103 GCGAAGAATG
**
26288113 AGAAAAAAAAAGATGA
1 AGAAAAAAAAAGAAAA
*
26288129 TGAAAAAAAAAAGAAAA
1 AG-AAAAAAAAAGAAAA
*
26288146 AGAAAAAGAAAGAAAGA
1 AGAAAAAAAAAGAAA-A
**
26288163 AGAAAAAATGA-AAAA
1 AGAAAAAAAAAGAAAA
*
26288178 ATAAAAAAATAA-AAAA
1 AGAAAAAAA-AAGAAAA
26288194 AGA
1 AGA
26288197 GATTCAAATT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
15 8 0.15
16 23 0.43
17 22 0.42
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.06
Consensus pattern (16 bp):
AGAAAAAAAAAGAAAA
Found at i:26288194 original size:8 final size:8
Alignment explanation
Indices: 26288165--26288194 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
26288155 AAGAAAGAAG
*
26288165 AAAAAATG
1 AAAAAATA
26288173 AAAAAATA
1 AAAAAATA
26288181 AAAAAATA
1 AAAAAATA
26288189 AAAAAA
1 AAAAAA
26288195 GAGATTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:26289509 original size:81 final size:80
Alignment explanation
Indices: 26289408--26290144 Score: 935
Period size: 81 Copynumber: 9.0 Consensus size: 80
26289398 GTCTAGGAGT
26289408 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCC
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGT-GTGCC
26289473 TCTGTTTAGAGGAGCA
65 TCTGTTTAGAGGAGCA
26289489 ATTTAC-TTTCAAAGTTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTT-CAAAGTTTCGT-TG
1 ATTTACTTTTCAAAG-TTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAG--TCGTGTG
26289551 CCTCTGTTTAGAGGAGCA
63 CCTCTGTTTAGAGGAGCA
*
26289569 ATTTACTTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTAATTTTCCAAAGTCGTGG
1 ATTTAC-TTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTT-ACTTTCCAAAGTCGT-G
*
26289633 TACCTCTGTTTAGAGGAGCA
61 TGCCTCTGTTTAGAGGAGCA
* *
26289653 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTAC
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAGTCGT-GTGC
*
26289718 CTCTGTCTAGAGGAGCA
64 CTCTGTTTAGAGGAGCA
* * *
26289735 ATTTAC-TTACAAAGTTCGTTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTAC
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAGTCGT-GTGC
26289799 CTCTGTTTAGAGGAGCA
64 CTCTGTTTAGAGGAGCA
* *
26289816 ATTTACTTTTTCAAAG-TCGTGGTACCTCTGTCTAGAGGAGCAATTTACTTT-CAAAGTTCGT-T
1 ATTTAC-TTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAG-TCGTGT
*
26289878 GCCTCTATTTAGAGGAGCA
62 GCCTCTGTTTAGAGGAGCA
* *
26289897 ATTTACTTTTCCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGT-T
1 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAG-TCGTGT
26289960 GCCTCTGTTTAGAGGAGCA
62 GCCTCTGTTTAGAGGAGCA
26289979 ATTTACTCTTTCCAAAAGTT-GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTT-CAAAGTTCGT
1 ATTTACT-TTT-C-AAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAG-TCGT
*
26290042 -TGCCTCTGTTTAGAGCAGCA
60 GTGCCTCTGTTTAGAGGAGCA
26290062 ATTTACATTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCGTTG
1 ATTTAC-TTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTC-CAAAGTCG-TG
* * *
26290126 AGCCTATGCTTAGAGGAGC
61 TGCCTCTGTTTAGAGGAGC
26290145 TTTGGTAAAA
Statistics
Matches: 604, Mismatches: 23, Indels: 55
0.89 0.03 0.08
Matches are distributed among these distances:
80 48 0.08
81 218 0.36
82 152 0.25
83 76 0.13
84 109 0.18
85 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (80 bp):
ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGTGCCT
CTGTTTAGAGGAGCA
Found at i:26289595 original size:42 final size:41
Alignment explanation
Indices: 26289408--26290144 Score: 976
Period size: 42 Copynumber: 18.0 Consensus size: 41
26289398 GTCTAGGAGT
26289408 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
26289448 ATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
26289489 ATTTAC-TTTCAAAGTTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG--TCGTGGTGCCTCTGTTTAGAGGAGCA
26289529 ATTTAC-TTTCAAAGTTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG--TCGTGGTGCCTCTGTTTAGAGGAGCA
26289569 ATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
26289611 ATTTAATTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
26289653 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
* *
26289693 ATTTACTTTTTCAAAGTCGTGGTACCTCTGTCTAGAGGAGCA
1 ATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
26289735 ATTTAC-TTACAAAGTTCGT--TGCCTCTATTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
26289774 ATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
26289816 ATTTACTTTTTCAAAGTCGTGGTACCTCTGTCTAGAGGAGCA
1 ATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
26289858 ATTTAC-TTTCAAAGTTCGT--TGCCTCTATTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
26289897 ATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
26289939 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
26289979 ATTTACTCTTTCCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACT-TTT-C-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
26290023 ATTTAC-TTTCAAAGTTCGT--TGCCTCTGTTTAGAGCAGCA
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
26290062 ATTTACATTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* * * *
26290104 ATTTACTTTCTCAAAGTCGTTGAGCCTATGCTTAGAGGAGC
1 ATTTACTTT-TCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
26290145 TTTGGTAAAA
Statistics
Matches: 631, Mismatches: 30, Indels: 70
0.86 0.04 0.10
Matches are distributed among these distances:
39 75 0.12
40 182 0.29
41 85 0.13
42 255 0.40
43 8 0.01
44 26 0.04
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (41 bp):
ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
Found at i:26289839 original size:123 final size:121
Alignment explanation
Indices: 26289408--26290144 Score: 1028
Period size: 123 Copynumber: 6.0 Consensus size: 121
26289398 GTCTAGGAGT
*
26289408 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGC
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGC
*
26289472 CTCTGTTTAGAGGAGCAATTTACTTTCAAAGTTTCGTTGCCTCTGTTTAGAGGAGCA
66 CTCTGTTTAGAGGAGCAATTTACTTCCAAAG-TTCGTTGCCTCTGTTTAGAGGAGCA
26289529 ATTTAC-TTTCAAAGTTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTG
1 ATTTACTTTTCAAAG-TTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTG
* *
26289593 CCTCTGTTTAGAGGAGCAATTTAATTTTCCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCA
65 CCTCTGTTTAGAGGAGCAATTT-A-CTTCCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
*
26289653 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTAC
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGC
* * *
26289718 CTCTGTCTAGAGGAGCAATTTACTTACAAAGTTCGTTGCCTCTATTTAGAGGAGCA
66 CTCTGTTTAGAGGAGCAATTTACTTCCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
*
26289774 ATTTACTTTTCCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGG
1 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGG
* * * *
26289838 TACCTCTGTCTAGAGGAGCAATTTACTTTCAAAGTTCGTTGCCTCTATTTAGAGGAGCA
63 TGCCTCTGTTTAGAGGAGCAATTTACTTCCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
*
26289897 ATTTACTTTTCCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCAATTTAC-TTTTCAAAGTTCGT-
1 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAG-TCGTG
26289959 -TGCCTCTGTTTAGAGGAGCAATTTACTCTTTCCAAAAGTT-GTGGTGCCTCTGTTTAGAGGAGC
62 GTGCCTCTGTTTAGAGGAGCAATTTA--C-TTCC-AAAGTTCGT--TGCCTCTGTTTAGAGGAGC
26290022 A
121 A
* *
26290023 ATTTAC-TTTCAAAGTTCGTTGCCTCTGTTTAGAGCAGCAATTTACATTTTCAAAGTCGTGGTGC
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGC
* *
26290087 CTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG-TCGTTGAGCCTATGCTTAGAGGAGC
66 CTCTGTTTAGAGGAGCAATTTAC-TTC-CAAAGTTCGTT--GCCTCTGTTTAGAGGAGC
26290145 TTTGGTAAAA
Statistics
Matches: 570, Mismatches: 20, Indels: 50
0.89 0.03 0.08
Matches are distributed among these distances:
120 8 0.01
121 93 0.16
122 64 0.11
123 213 0.37
124 121 0.21
125 46 0.08
126 25 0.04
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (121 bp):
ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGC
CTCTGTTTAGAGGAGCAATTTACTTCCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
Found at i:26290157 original size:1 final size:1
Alignment explanation
Indices: 26290151--26290268 Score: 74
Period size: 1 Copynumber: 118.0 Consensus size: 1
26290141 GAGCTTTGGT
* * * * * * * * *
26290151 AAAAAAAAAAAACAAAAAAACAAAACAAATAAAAAATAAAAAAACAAATAAAAAACAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * *
26290216 AAACAAATAAAAAGACAAAAATAAAAAAAACAACAAAAAAAGAACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26290269 GTTGCCTCTA
Statistics
Matches: 81, Mismatches: 36, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 81 1.00
ACGTcount: A:0.85, C:0.09, G:0.02, T:0.04
Consensus pattern (1 bp):
A
Found at i:26290169 original size:12 final size:12
Alignment explanation
Indices: 26290152--26290268 Score: 103
Period size: 12 Copynumber: 9.7 Consensus size: 12
26290142 AGCTTTGGTA
26290152 AAAAAAAAAAAC
1 AAAAAAAAAAAC
26290164 AAAAAAACAAAAC
1 AAAAAAA-AAAAC
* *
26290177 -AAATAAAAAAT
1 AAAAAAAAAAAC
* *
26290188 AAAAAAACAAAT
1 AAAAAAAAAAAC
*
26290200 AAAAAACAAAAC
1 AAAAAAAAAAAC
* *
26290212 AAAAAAACAAAT
1 AAAAAAAAAAAC
*
26290224 AAAAAGACAAAAAT
1 AAAAA-A-AAAAAC
*
26290238 AAAAAAAACAAC
1 AAAAAAAAAAAC
*
26290250 -AAAAAAAGAAC
1 AAAAAAAAAAAC
26290261 AAAAAAAA
1 AAAAAAAA
26290269 GTTGCCTCTA
Statistics
Matches: 86, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
11 14 0.16
12 55 0.64
13 7 0.08
14 10 0.12
ACGTcount: A:0.85, C:0.09, G:0.02, T:0.04
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:26290184 original size:24 final size:24
Alignment explanation
Indices: 26290154--26290267 Score: 119
Period size: 24 Copynumber: 4.7 Consensus size: 24
26290144 CTTTGGTAAA
26290154 AAAAAAAAACAAAAAAACAAA-AC
1 AAAAAAAAACAAAAAAACAAATAC
*
26290177 AAATAAAAAATAAAAAAACAAATA-
1 AAA-AAAAAACAAAAAAACAAATAC
*
26290201 AAAAACAAAACAAAAAAACAAATAA
1 AAAAA-AAAACAAAAAAACAAATAC
* *
26290226 AAAGACAAAAATAAAAAAA-ACA-AC
1 AAA-A-AAAAACAAAAAAACAAATAC
26290250 AAAAAAAGAACAAAAAAA
1 AAAAAAA-AACAAAAAAA
26290268 AGTTGCCTCT
Statistics
Matches: 78, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
22 3 0.04
23 15 0.19
24 41 0.53
25 6 0.08
26 12 0.15
27 1 0.01
ACGTcount: A:0.84, C:0.10, G:0.02, T:0.04
Consensus pattern (24 bp):
AAAAAAAAACAAAAAAACAAATAC
Found at i:26290208 original size:43 final size:42
Alignment explanation
Indices: 26290154--26290269 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
26290144 CTTTGGTAAA
*
26290154 AAAAAAAAACAAAAAAACAAAACAAATAAAAA-ATAAAAA-AA
1 AAAAAAAAACAAAAAAA-AAAACAAATAAAAAGACAAAAATAA
26290195 CAAATAAAAAACAAAACAAAAAAACAAATAAAAAGACAAAAATAA
1 -AAA-AAAAAACAAAA-AAAAAAACAAATAAAAAGACAAAAATAA
* *
26290240 AAAAAACAAC-AAAAAAAGAACAAA-AAAAAG
1 AAAAAAAAACAAAAAAAAAAACAAATAAAAAG
26290270 TTGCCTCTAT
Statistics
Matches: 67, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
40 6 0.09
41 10 0.15
42 6 0.09
43 31 0.46
44 12 0.18
45 2 0.03
ACGTcount: A:0.84, C:0.09, G:0.03, T:0.04
Consensus pattern (42 bp):
AAAAAAAAACAAAAAAAAAAACAAATAAAAAGACAAAAATAA
Found at i:26290388 original size:16 final size:14
Alignment explanation
Indices: 26290348--26290398 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
26290338 TTTTTTTTTT
26290348 AAAAAAAAAAAGAG
1 AAAAAAAAAAAGAG
*
26290362 CAAAAAAAAAAGAG
1 AAAAAAAAAAAGAG
26290376 TAAAAAAAAAAA-AG
1 -AAAAAAAAAAAGAG
26290390 AAAACAAAA
1 AAAA-AAAA
26290399 GAAAAAGTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 4 0.12
14 19 0.58
15 10 0.30
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.02
Consensus pattern (14 bp):
AAAAAAAAAAAGAG
Found at i:26290403 original size:16 final size:16
Alignment explanation
Indices: 26290350--26290405 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
26290340 TTTTTTTTAA
*
26290350 AAAAAAAAAGAG-CA-
1 AAAAAAAAAGAGAAAC
26290364 AAAAAAAAAGAGTAAA-
1 AAAAAAAAAGAG-AAAC
26290380 AAAAAAAAAGA-AAAC
1 AAAAAAAAAGAGAAAC
26290395 AAAAGAAAAAG
1 AAAA-AAAAAG
26290406 TTGCCTCTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
14 15 0.41
15 4 0.11
16 18 0.49
ACGTcount: A:0.82, C:0.04, G:0.12, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAGAGAAAC
Found at i:26290497 original size:10 final size:10
Alignment explanation
Indices: 26290477--26290512 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
26290467 GAGCTTTGGT
26290477 AAAAAAA-AA
1 AAAAAAACAA
*
26290486 AAAAACACAA
1 AAAAAAACAA
26290496 AAAAAAACAA
1 AAAAAAACAA
26290506 AAAAAAA
1 AAAAAAA
26290513 AATGAAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 6 0.25
10 18 0.75
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:26290514 original size:12 final size:12
Alignment explanation
Indices: 26290480--26290514 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
26290470 CTTTGGTAAA
26290480 AAAAAAAAAAAC
1 AAAAAAAAAAAC
*
26290492 ACAAAAAAAAAC
1 AAAAAAAAAAAC
26290504 AAAAAAAAAAA
1 AAAAAAAAAAA
26290515 TGAAAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:26290810 original size:23 final size:23
Alignment explanation
Indices: 26290784--26290842 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
26290774 TATTTTCGTA
* * *
26290784 TTTTTATATATCTGATATTATTC
1 TTTTTATTTATCTCATAATATTC
* *
26290807 TTTTTATTTATCCCATAATATTT
1 TTTTTATTTATCTCATAATATTC
26290830 TTTTTATTTATCT
1 TTTTTATTTATCT
26290843 TTTCTAATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTTTATTTATCTCATAATATTC
Found at i:26291815 original size:15 final size:16
Alignment explanation
Indices: 26291791--26291820 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26291781 TTCTTTAAAT
26291791 AAAAATAAAAAATTTC
1 AAAAATAAAAAATTTC
26291807 AAAAA-AAAAAATTT
1 AAAAATAAAAAATTT
26291821 TTAGGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAATAAAAAATTTC
Found at i:26291863 original size:60 final size:59
Alignment explanation
Indices: 26291797--26292045 Score: 295
Period size: 60 Copynumber: 4.1 Consensus size: 59
26291787 AAATAAAAAT
* *
26291797 AAAAAATTTCAAAAAAAAAAATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAA
1 AAAAAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT---A-AA
*
26291860 AAATAAATTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAA
1 AAA-AAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AA
* * *** *
26291921 ATAAATTTTCAAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
1 AAAAAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAA
* * *
26291981 ATCAAAATTTC--CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCCTACAA
1 A-AAAAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AA
26292040 AAAAAA
1 AAAAAA
26292046 AATCATTCTT
Statistics
Matches: 163, Mismatches: 19, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
58 5 0.03
59 41 0.25
60 50 0.31
61 14 0.09
63 3 0.02
64 50 0.31
ACGTcount: A:0.48, C:0.08, G:0.13, T:0.31
Consensus pattern (59 bp):
AAAAAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
Found at i:26291934 original size:59 final size:60
Alignment explanation
Indices: 26291803--26292033 Score: 306
Period size: 59 Copynumber: 3.8 Consensus size: 60
26291793 AAATAAAAAA
* *
26291803 TTTCAAAAAAAAAAATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAAT
1 TTTC-AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG-AAAATAAAT
*
26291868 TTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAATAAAT
1 TTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAAT
** * *
26291927 TTTCAAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCAAAA
1 TTTCAAAAAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAAT-AAAT
*
26291988 TTTC-CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
26292034 CTACAAAAAA
Statistics
Matches: 151, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
59 52 0.34
60 44 0.29
61 9 0.06
64 43 0.28
65 3 0.02
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (60 bp):
TTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAAT
Found at i:26296420 original size:11 final size:11
Alignment explanation
Indices: 26296391--26296433 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
26296381 CGGTAATTTA
26296391 AAATATAATAT
1 AAATATAATAT
*
26296402 ATTGATATAATAT
1 A--AATATAATAT
*
26296415 GAATATAATAT
1 AAATATAATAT
26296426 AAATATAA
1 AAATATAA
26296434 AATATATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 17 0.65
13 9 0.35
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (11 bp):
AAATATAATAT
Found at i:26296437 original size:24 final size:24
Alignment explanation
Indices: 26296392--26296438 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
26296382 GGTAATTTAA
* *
26296392 AATATAATATATTGATATAATATG
1 AATATAATATAATGATAAAATATG
26296416 AATATAATATAAAT-ATAAAATAT
1 AATATAATAT-AATGATAAAATAT
26296439 ATAAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
AATATAATATAATGATAAAATATG
Found at i:26296442 original size:15 final size:14
Alignment explanation
Indices: 26296422--26296473 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 14
26296412 TATGAATATA
26296422 ATATAAATATAAAAT
1 ATATAAAT-TAAAAT
26296437 ATATAAATTAAAATT
1 ATATAAATTAAAA-T
*
26296452 TTAATAAAATTAAAAAT
1 AT-AT-AAATT-AAAAT
26296469 ATATA
1 ATATA
26296474 TTTTATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 5 0.16
15 11 0.35
16 4 0.13
17 7 0.23
18 4 0.13
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATATAAATTAAAAT
Found at i:26296568 original size:24 final size:23
Alignment explanation
Indices: 26296529--26296575 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
26296519 TATAATATGA
* *
26296529 ATAAATAAATTTTAAATTTTTAT
1 ATAAATAAATTATAAATTATTAT
26296552 ATAATATAAATTATAAATTATTAT
1 ATAA-ATAAATTATAAATTATTAT
26296576 TTATATCACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
ATAAATAAATTATAAATTATTAT
Found at i:26315832 original size:16 final size:17
Alignment explanation
Indices: 26315810--26315843 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26315800 TACTCGAATC
*
26315810 TAAAATT-ATTTTAATT
1 TAAAATTGATTTAAATT
26315826 TAAAATTGATTTAAATT
1 TAAAATTGATTTAAATT
26315843 T
1 T
26315844 TTTTAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TAAAATTGATTTAAATT
Found at i:26317928 original size:14 final size:14
Alignment explanation
Indices: 26317909--26317935 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26317899 AATCACTCTG
26317909 TGTAAATTCACCCC
1 TGTAAATTCACCCC
26317923 TGTAAATTCACCC
1 TGTAAATTCACCC
26317936 ATATACAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.33, G:0.07, T:0.30
Consensus pattern (14 bp):
TGTAAATTCACCCC
Found at i:26319120 original size:2 final size:2
Alignment explanation
Indices: 26319113--26319137 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26319103 GCTACTTAAG
26319113 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
26319138 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:26319142 original size:2 final size:2
Alignment explanation
Indices: 26319137--26319170 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
26319127 TCTCTCTCTC
26319137 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26319171 CTACATAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26327477 original size:373 final size:371
Alignment explanation
Indices: 26326538--26327909 Score: 1918
Period size: 370 Copynumber: 3.7 Consensus size: 371
26326528 TAGGGATTAG
* * * * * * * ** *
26326538 TGTCATGGGTCGAGATTTAAGCTTCGAACTCGCGCGACTCCGAGACCTGGGCATTCATTCTTTCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* ** * *
26326603 GCGTCCCAGATCAGCCT-TTCGCCATGGTTCACATCCTTGTGAGGTTTTGTCCGCTCTGGCCCCC
66 GCATCCCAGATCAGCCTGACCGCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
* * *
26326667 TGGCCTCACGGTTTTGTCCTATAAAAGGCGCCTCACAAGGTGG-AGATGGTGTGAACCCTTTTAT
131 TGGCCTCACGATTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAAGATGGTGTGAACCCTTTTAT
* * * *
26326731 ACCTCAGTGACCCTCCTATTATGTTCGATGTGAGATTCAGGACTCTCCCTTAAGTCCGTGACATT
196 ACCCCAGTGACCCTTCTATTATGTTCGATGTGAGATTCAGGACTCCCCCTTAGGTCCGTGACATT
* * * * *
26326796 CTCTCGCACCCAACCTCGTGATGCCCTCGTCACGAAGGCTGGCCACCTTACCTACCTCCCTCGAG
261 CTCCCGCACCCAACCTCGTGAAGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAG
* *
26326861 GCGCTCGACGTGGATCGAACGATATAGGACTGGCTCTGATACCACT
326 GCGCTCGACGTGGATCGAACGATTTAGGGCTGGCTCTGATACCACT
* *
26326907 TGTCACGGGTCGAGACTTAAGCTTCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCA
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* *
26326972 GCATCCC-GAATCAGCCTGACCGTCATGATTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
66 GCATCCCAG-ATCAGCCTGACCGCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGG-CCC
* *
26327036 CCT-GCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAA-AGGGTGTGAACCCTTTT
129 CCTGGCCTCACGATTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAAGATGGTGTGAACCCTTTT
26327099 ATACCCCAGTGACCCTTCTATTATGTTCGATGTGAGATTCAGGACTCCCCCTTAGGTCCGTGACA
194 ATACCCCAGTGACCCTTCTATTATGTTCGATGTGAGATTCAGGACTCCCCCTTAGGTCCGTGACA
* *
26327164 TTCTCCCGCATCCAATCTCGTGAAGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCG
259 TTCTCCCGCACCCAACCTCGTGAAGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCG
*
26327229 AGGCGCTCGACGTGGATAGAACGATTTAGGGCTGGCTCTGATACCACTTCT
324 AGGCGCTCGACGTGGATCGAACGATTTAGGGCTGGCTCTGATACCA---CT
* * * *
26327280 TGTCACGGGTTGAGACTTAAGCTCCAAACTCGTGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* ** * *
26327345 GCATCCCAGATCAGCCT-TCCTGCCCCGGTTCACACCCTTGTGAGGTATTGTCCGTTCTGACCCC
66 GCATCCCAGATCAGCCTGACC-GCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
* *
26327409 CTGACCTCACGATTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAAG-TGGTGTGAACCCTTATA
130 CTGGCCTCACGATTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAAGATGGTGTGAACCCTTTTA
* *
26327473 TACCCCAGTGACCCTTCTATTATGTTCGATGTGGGATTCATGACTCCCCCTTAGGTCCGTGACAT
195 TACCCCAGTGACCCTTCTATTATGTTCGATGTGAGATTCAGGACTCCCCCTTAGGTCCGTGACAT
* * * * **
26327538 TCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGG-TCAGCTACCCTGCCTACCTCTCTTA
260 TCTCCCGCACCCAACCTCGTGAAGCCCTCGTCACGGAGGCT-GGCCACCCTGCCTACCTCCCTCG
* ** * * * *
26327602 AAGTACTTGGCGTGAATCGAACGGTTTAGGGCTGGCTCTGATACCACT
324 AGGCGCTCGACGTGGATCGAACGATTTAGGGCTGGCTCTGATACCACT
26327650 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* * *
26327715 ACGTCCCAGATCAGCCTGACCGCCATGGTTCACACCTTTGTGAGGTATTGTCCGCTCTGGCCCCC
66 GCATCCCAGATCAGCCTGACCGCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
* * * *
26327780 GTGGCCTCACGATTTTGTCCTATAAAAGGCGTCTTACAAGGC-GAAGATGGTGTAAACCCTTTTA
131 -TGGCCTCACGATTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAAGATGGTGTGAACCCTTTTA
** * *
26327844 TACCTTAGTGA-CATTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTCCGTGACA
195 TACCCCAGTGACCCTT-CTATTATGTTCGATGTGAGATTCAGGACTCCCCCTTAGGTCCGTGACA
26327908 TT
259 TT
26327910 ACCTTGTCAC
Statistics
Matches: 896, Mismatches: 91, Indels: 30
0.88 0.09 0.03
Matches are distributed among these distances:
368 1 0.00
369 69 0.08
370 377 0.42
371 119 0.13
372 9 0.01
373 320 0.36
374 1 0.00
ACGTcount: A:0.19, C:0.32, G:0.23, T:0.26
Consensus pattern (371 bp):
TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
GCATCCCAGATCAGCCTGACCGCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
TGGCCTCACGATTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAAGATGGTGTGAACCCTTTTAT
ACCCCAGTGACCCTTCTATTATGTTCGATGTGAGATTCAGGACTCCCCCTTAGGTCCGTGACATT
CTCCCGCACCCAACCTCGTGAAGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAG
GCGCTCGACGTGGATCGAACGATTTAGGGCTGGCTCTGATACCACT
Found at i:26328593 original size:370 final size:370
Alignment explanation
Indices: 26327912--26328909 Score: 1439
Period size: 370 Copynumber: 2.7 Consensus size: 370
26327902 GTGACATTAC
* * * * *
26327912 CTTGTCACGGGTTGAGACTTAAGCTCCGAACTCGCGCGGGTCCAGGACCCGAGCATTCACCCTTT
1 CTTGTCACGGGTTGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTC
* * *
26327977 CGACATCCCAGATCAGCTTTCTTGCCACGGTTCACACCCTTGCGAGGTATTGTCCGCTCTGGCCC
66 CGACATCCCAGATCAGCCTTCCTGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCC
* * * * * *
26328042 CCTGACCTCATGGTTCTGTGC-TACAAAAGGCGCCTTATAAGGTGGAGGTGGTGTGAACCCTTAT
131 CCTGACCTCACGGTTTTGT-CTTACAAAAGGCGTCTCACAAGGCGGAGGTGGTGTGAACCCTTAT
26328106 ATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCATCCTTAGGTCCGTGACA
195 ATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCATCCTTAGGTCCGTGACA
*
26328171 TTCTCCCACACCCAACCTCGTGACGTCCTCATCACGGAGGCTGACCACCCTGCCTACC-TCACTC
260 TTCTCCCACACCCAACCTCGTGACGCCCTCATCACGGAGGCTGACCACCCTGCCTACCTTC-CTC
*
26328235 GAGGTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCA
324 GAGGTGCTTGGCGTGGATCGAACGATTTAGGGCTGGCTCTGATACCA
* *
26328282 CTTGTCACGGGTTGAGACTTAAGCTTCGAACCCACGCGGCTCCGGGACCCGGGCATTCACCCTTC
1 CTTGTCACGGGTTGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTC
* **
26328347 CGGCATCCCAGATCAGCCTTCCTGCCACAATTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCC
66 CGACATCCCAGATCAGCCTTCCTGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCC
26328412 CCTGACCTCACGGTTTTGTCTTACAAAAGGCGTCTCACAAGGCGGAGGTGGTGTGAACCCTTATA
131 CCTGACCTCACGGTTTTGTCTTACAAAAGGCGTCTCACAAGGCGGAGGTGGTGTGAACCCTTATA
26328477 TACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCATCCTTAGGTCCGTGACAT
196 TACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCATCCTTAGGTCCGTGACAT
* * * *
26328542 TCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGG-TCGGCCACCCTGCCTACCTTCCTTG
261 TCTCCCACACCCAACCTCGTGACGCCCTCATCACGGAGGCT-GACCACCCTGCCTACCTTCCTCG
26328606 AGGTGCTTGGCGTGGATCGAACGATTTAGGGCTGGCTCTGATACCA
325 AGGTGCTTGGCGTGGATCGAACGATTTAGGGCTGGCTCTGATACCA
* * * * *
26328652 TTTGTCACGGGTCGAGACTTAAGCTCCGAACCTGCGCGACTCCGGGACCTGGGCATTCACCCTTC
1 CTTGTCACGGGTTGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTC
* * * * * *
26328717 CGACGTCCCAGATCAGCCTGACC-GTCATGGTTCACACTCTTGTGAGGTATTGTCCGCTCTGACC
66 CGACATCCCAGATCAGCCT-TCCTGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCC
* * * * * * * * *
26328781 CTCGTGACCTCACGATTTTGTCTTATAAAAGGCGTCTCACAAGGCGAAGATGGTATAAACTCTTT
130 C-CCTGACCTCACGGTTTTGTCTTACAAAAGGCGTCTCACAAGGCGGAGGTGGTGTGAACCCTTA
* * * * * * *
26328846 TATACCTCAATGACCTTCTTATTATGTTTGATGTGAGATTCAGGACTC-TCTCTTAGATCCGTGA
194 TATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCATC-CTTAGGTCCGTGA
26328910 TACTAGAGTT
Statistics
Matches: 565, Mismatches: 57, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
369 2 0.00
370 451 0.80
371 112 0.20
ACGTcount: A:0.19, C:0.31, G:0.24, T:0.26
Consensus pattern (370 bp):
CTTGTCACGGGTTGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTC
CGACATCCCAGATCAGCCTTCCTGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCC
CCTGACCTCACGGTTTTGTCTTACAAAAGGCGTCTCACAAGGCGGAGGTGGTGTGAACCCTTATA
TACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCATCCTTAGGTCCGTGACAT
TCTCCCACACCCAACCTCGTGACGCCCTCATCACGGAGGCTGACCACCCTGCCTACCTTCCTCGA
GGTGCTTGGCGTGGATCGAACGATTTAGGGCTGGCTCTGATACCA
Found at i:26332316 original size:60 final size:59
Alignment explanation
Indices: 26332166--26332326 Score: 173
Period size: 59 Copynumber: 2.7 Consensus size: 59
26332156 TTTGTATAAG
* * * * * * ***
26332166 GAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTCTTGATAATTTTTATTTTTGA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAAATTTTTTTTTATAAATTTAATTTCAAA
* * *
26332225 GAAAAATTGGTACTTCCAACTTTT-CTC-AAAAATGTTTTTTTTTTAAATTTAATTTCAAA
1 G-AAAATTGATACTTTCAACTTTTCCTCAAAAAAT-TTTTTTTTATAAATTTAATTTCAAA
*
26332284 GAAAATTGATACTTTCAACTTTTCCTCAAAAAATTTATTTTTA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAAATTTTTTTTTA
26332327 AGAAAAATTG
Statistics
Matches: 82, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
58 25 0.30
59 31 0.38
60 26 0.32
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (59 bp):
GAAAATTGATACTTTCAACTTTTCCTCAAAAAATTTTTTTTTATAAATTTAATTTCAAA
Found at i:26332331 original size:103 final size:103
Alignment explanation
Indices: 26332214--26332422 Score: 253
Period size: 103 Copynumber: 2.0 Consensus size: 103
26332204 CTTGATAATT
* * * **
26332214 TTTATTTTTGAGAAAAATTGGTACTTCCAA-CTTTT-CTCAAAAATGTTTTTTTTTTAAATTTAA
1 TTTATTTTTAAGAAAAATTGATACTTCCAATCTTTTCCTCAAAAA--TATTTTTTAAAAATTTAA
26332277 TTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAA-A
64 TTTCAAA-AAAATTGATACTTTCAACTTTTCCTCAAAAATA
* * * *
26332317 TTTATTTTTAAGAAAAATTGATACTTTCAATTTTTTCCTCAACAATATTTTTTAAAAATTTTATT
1 TTTATTTTTAAGAAAAATTGATACTTCCAATCTTTTCCTCAAAAATATTTTTTAAAAATTTAATT
** * *
26332382 TTTAAAAAATTGATATTTTCAACTTTTCCTTAAAAATA
66 TCAAAAAAATTGATACTTTCAACTTTTCCTCAAAAATA
26332420 TTT
1 TTT
26332423 TTTCTTGAAA
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
102 29 0.32
103 50 0.56
104 4 0.04
105 7 0.08
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.48
Consensus pattern (103 bp):
TTTATTTTTAAGAAAAATTGATACTTCCAATCTTTTCCTCAAAAATATTTTTTAAAAATTTAATT
TCAAAAAAATTGATACTTTCAACTTTTCCTCAAAAATA
Found at i:26332381 original size:16 final size:16
Alignment explanation
Indices: 26332362--26332392 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26332352 TCCTCAACAA
*
26332362 TATTTTTTAAAAATTT
1 TATTTTTAAAAAATTT
26332378 TATTTTTAAAAAATT
1 TATTTTTAAAAAATT
26332393 GATATTTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TATTTTTAAAAAATTT
Found at i:26332442 original size:59 final size:59
Alignment explanation
Indices: 26332311--26332425 Score: 164
Period size: 56 Copynumber: 2.0 Consensus size: 59
26332301 ACTTTTCCTC
* * *
26332311 AAAAAATTTATTTTTAAGAAAAATTGATACTTTCAATTTTTTCCTCAACAATATTTTTT
1 AAAAATTTTATTTTTAAGAAAAATTGATACTTTCAATCTTTTCCTCAAAAATATTTTTT
* *
26332370 AAAAATTTTATTTTT-A-AAAAATTGATATTTTCAA-CTTTTCCTTAAAAATATTTTTT
1 AAAAATTTTATTTTTAAGAAAAATTGATACTTTCAATCTTTTCCTCAAAAATATTTTTT
26332426 CTTGAAAATT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
56 19 0.37
57 17 0.33
58 1 0.02
59 14 0.27
ACGTcount: A:0.39, C:0.09, G:0.03, T:0.50
Consensus pattern (59 bp):
AAAAATTTTATTTTTAAGAAAAATTGATACTTTCAATCTTTTCCTCAAAAATATTTTTT
Found at i:26332514 original size:19 final size:20
Alignment explanation
Indices: 26332490--26332543 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
26332480 AAATATATTT
26332490 TAAAAAATAAACAAACA-CA
1 TAAAAAATAAACAAACACCA
*
26332509 TAAAAAATACAA-AAATACCA
1 TAAAAAATA-AACAAACACCA
26332529 -AAGAAAATAAACAAA
1 TAA-AAAATAAACAAA
26332544 AAATACCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.74, C:0.13, G:0.02, T:0.11
Consensus pattern (20 bp):
TAAAAAATAAACAAACACCA
Found at i:26333245 original size:19 final size:21
Alignment explanation
Indices: 26333221--26333270 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
26333211 CAACTTCTTC
26333221 TTTTTTTATTTTTCTCAATT-
1 TTTTTTTATTTTTCTCAATTA
* *
26333241 TTTTTTTAATTTTCT-TATTA
1 TTTTTTTATTTTTCTCAATTA
26333261 TTTTTTTATT
1 TTTTTTTATT
26333271 AACAAATGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 3 0.12
20 23 0.88
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTTTTATTTTTCTCAATTA
Found at i:26333515 original size:44 final size:44
Alignment explanation
Indices: 26333462--26333799 Score: 248
Period size: 44 Copynumber: 7.7 Consensus size: 44
26333452 ATGCTCCTCT
* * *
26333462 AAACAGAGGCTCAACAGCTTTTGAAAAATAAACAAAGTTCTTCC
1 AAACAGAGGCTCAACAACTTTTGAAAAATAAACAAAGCTCATCC
* *
26333506 AATCAGAGGCTCAACAAC-TTTGAAAAATAAACAAAGCTCATCT
1 AAACAGAGGCTCAACAACTTTTGAAAAATAAACAAAGCTCATCC
* ** * *
26333549 AAACAGAGGCTCAACAACTTTTAAAAAAT-AA-ATTGCTCTTCT
1 AAACAGAGGCTCAACAACTTTTGAAAAATAAACAAAGCTCATCC
* * * * *
26333591 ACACAGAGTAAAACTCATCAAC-TTTGAAAAAATAAACAAAGCTCCTCT
1 AAACAGAG----GCTCAACAACTTTTG-AAAAATAAACAAAGCTCATCC
* * * **
26333639 AAACAGAGGCTCAACGATTTTTAAAAAAT-AA-ATTGCTC-TCC
1 AAACAGAGGCTCAACAACTTTTGAAAAATAAACAAAGCTCATCC
* * * *
26333680 TAAACAGAGG-TACCACAAC-TTTGAAAAAATAAACAAAACTCTTCT
1 -AAACAGAGGCT-CAACAACTTTTG-AAAAATAAACAAAGCTCATCC
* * *
26333725 AATCAGAGGCTCAACAAC-TTTGAAAAAATAAACAAAGCTCCTCT
1 AAACAGAGGCTCAACAACTTTTG-AAAAATAAACAAAGCTCATCC
* * *
26333769 AATCAGAGGCACCACAAC-TTTGAAAAATAAA
1 AAACAGAGGCTCAACAACTTTTGAAAAATAAA
26333800 ATGCTCATTG
Statistics
Matches: 238, Mismatches: 40, Indels: 33
0.77 0.13 0.11
Matches are distributed among these distances:
41 6 0.03
42 39 0.16
43 54 0.23
44 99 0.42
45 9 0.04
46 14 0.06
47 2 0.01
48 15 0.06
ACGTcount: A:0.46, C:0.21, G:0.11, T:0.22
Consensus pattern (44 bp):
AAACAGAGGCTCAACAACTTTTGAAAAATAAACAAAGCTCATCC
Found at i:26333651 original size:90 final size:87
Alignment explanation
Indices: 26333454--26333799 Score: 350
Period size: 90 Copynumber: 4.0 Consensus size: 87
26333444 AACGATAAAT
* * * ** * *
26333454 GCTCCTCTAAACAGAGGCTCAACAGCTTTTGAAAAATAAACAAAGTTCTTCC-AATCAGAGG--C
1 GCTCATCTAAACAGAGGCTCAACAACTTTTAAAAAAT-AA-ATTGCTC-TCCTAAACAGAGGTAC
26333516 TCAACAACTTTG-AAAAATAAACAAA
63 TC-ACAACTTTGAAAAAATAAACAAA
* *
26333541 GCTCATCTAAACAGAGGCTCAACAACTTTTAAAAAATAAATTGCTCTTCTACACAGA-GTAAAAC
1 GCTCATCTAAACAGAGGCTCAACAACTTTTAAAAAATAAATTGCTCTCCTAAACAGAGGT---AC
26333605 TCATCAACTTTGAAAAAATAAACAAA
63 TCA-CAACTTTGAAAAAATAAACAAA
* * *
26333631 GCTCCTCTAAACAGAGGCTCAACGATTTTTAAAAAATAAATTGCTCTCCTAAACAGAGGTAC-CA
1 GCTCATCTAAACAGAGGCTCAACAACTTTTAAAAAATAAATTGCTCTCCTAAACAGAGGTACTCA
26333695 CAACTTTGAAAAAATAAACAAA
66 CAACTTTGAAAAAATAAACAAA
* * * * ** * *
26333717 ACTCTTCTAATCAGAGGCTCAACAACTTTGAAAAAATAAACAAAGCTC-CTCTAATCAGAGGCAC
1 GCTCATCTAAACAGAGGCTCAACAACTTTTAAAAAAT-AA-ATTGCTCTC-CTAAACAGAGGTAC
26333781 -CACAACTTTG-AAAAATAAA
63 TCACAACTTTGAAAAAATAAA
26333800 ATGCTCATTG
Statistics
Matches: 223, Mismatches: 24, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
84 3 0.01
85 9 0.04
86 55 0.25
87 48 0.22
88 30 0.13
89 11 0.05
90 65 0.29
91 2 0.01
ACGTcount: A:0.45, C:0.21, G:0.11, T:0.23
Consensus pattern (87 bp):
GCTCATCTAAACAGAGGCTCAACAACTTTTAAAAAATAAATTGCTCTCCTAAACAGAGGTACTCA
CAACTTTGAAAAAATAAACAAA
Found at i:26334507 original size:21 final size:23
Alignment explanation
Indices: 26334467--26334516 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
26334457 GACTTCACAC
*
26334467 CTCAAAGATTCTTATTTTGA-AA
1 CTCAAAGAGTCTTATTTTGAGAA
*
26334489 CTCAAAGAGTC-TCTTTTGAGAA
1 CTCAAAGAGTCTTATTTTGAGAA
26334511 CTCAAA
1 CTCAAA
26334517 AATTTTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (23 bp):
CTCAAAGAGTCTTATTTTGAGAA
Found at i:26339801 original size:58 final size:58
Alignment explanation
Indices: 26339739--26339855 Score: 150
Period size: 59 Copynumber: 2.0 Consensus size: 58
26339729 TAACTTTTCC
* *
26339739 TAAAAA-ATTATTTT-TAAGAAAAATTGATACTTTCAACTTTT-TTCCCAAAAATATTTTT
1 TAAAAATATTATTTTCAAAG-AAAATTAATACTTTCAACTTTTCTT--CAAAAATATTTTT
* *
26339797 TAAAAATTTTATTTTCAAAGAAAATTAATACTTTCAACTTTTCTTTAAAAATATTTTT
1 TAAAAATATTATTTTCAAAGAAAATTAATACTTTCAACTTTTCTTCAAAAATATTTTT
26339855 T
1 T
26339856 CTTGAAAATT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
58 19 0.37
59 28 0.54
60 5 0.10
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (58 bp):
TAAAAATATTATTTTCAAAGAAAATTAATACTTTCAACTTTTCTTCAAAAATATTTTT
Found at i:26339995 original size:22 final size:22
Alignment explanation
Indices: 26339927--26339995 Score: 76
Period size: 21 Copynumber: 3.2 Consensus size: 22
26339917 TATATTCTAA
26339927 AAAATAAACAAACACATA--AAA-
1 AAAATAAACAAA-A-ATACCAAAG
26339948 AAAATACAA-AAAAA-ACCAAAG
1 AAAATA-AACAAAAATACCAAAG
26339969 AAAATAAACAAAAATACCAAAG
1 AAAATAAACAAAAATACCAAAG
26339991 AAAAT
1 AAAAT
26339996 CGATAATGGC
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
18 1 0.02
19 1 0.02
20 6 0.14
21 20 0.48
22 14 0.33
ACGTcount: A:0.75, C:0.13, G:0.03, T:0.09
Consensus pattern (22 bp):
AAAATAAACAAAAATACCAAAG
Found at i:26340271 original size:19 final size:18
Alignment explanation
Indices: 26340236--26340282 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
26340226 TCACAGATTG
26340236 CTTCATTCTCTTTCTCTCT
1 CTTC-TTCTCTTTCTCTCT
*
26340255 CTTCTTCTTTTTCCTCTCT
1 CTTCTTCTCTTT-CTCTCT
26340274 CTT-TTCTCT
1 CTTCTTCTCT
26340283 CTACTGGTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (18 bp):
CTTCTTCTCTTTCTCTCT
Found at i:26340660 original size:9 final size:9
Alignment explanation
Indices: 26340643--26340689 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
26340633 TAAATTCAAC
*
26340643 TTTCTTTTT
1 TTTCATTTT
26340652 TTTCATTTT
1 TTTCATTTT
*
26340661 TCTCAATTTT
1 TTTC-ATTTT
26340671 TTT-ATTTT
1 TTTCATTTT
*
26340679 TTTAATTTT
1 TTTCATTTT
26340688 TT
1 TT
26340690 ATTATTATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 8 0.24
9 18 0.55
10 7 0.21
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTCATTTT
Found at i:26342772 original size:32 final size:32
Alignment explanation
Indices: 26342736--26342800 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
26342726 ATATAATGCC
26342736 ATAGGAGCTTTTATAGGTACCTATGTCACCAA
1 ATAGGAGCTTTTATAGGTACCTATGTCACCAA
26342768 ATAGGAGCTTTTATAGGTACCTATGTCACCAA
1 ATAGGAGCTTTTATAGGTACCTATGTCACCAA
26342800 A
1 A
26342801 CAATTGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (32 bp):
ATAGGAGCTTTTATAGGTACCTATGTCACCAA
Found at i:26365097 original size:8 final size:8
Alignment explanation
Indices: 26365084--26365110 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
26365074 AGGCAGCAAG
26365084 CATAATTC
1 CATAATTC
26365092 CATAATTC
1 CATAATTC
26365100 CATAATTC
1 CATAATTC
26365108 CAT
1 CAT
26365111 TGACAGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (8 bp):
CATAATTC
Found at i:26369150 original size:18 final size:18
Alignment explanation
Indices: 26369127--26369166 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
26369117 CTGGTCGTGT
26369127 TGTTGATATGAGCGTTAA
1 TGTTGATATGAGCGTTAA
26369145 TGTTGATATGAGCGTTAA
1 TGTTGATATGAGCGTTAA
26369163 TGTT
1 TGTT
26369167 ATGTTCCCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.25, C:0.05, G:0.28, T:0.42
Consensus pattern (18 bp):
TGTTGATATGAGCGTTAA
Found at i:26370554 original size:64 final size:62
Alignment explanation
Indices: 26370467--26370655 Score: 163
Period size: 64 Copynumber: 3.0 Consensus size: 62
26370457 CATTGAATAA
* * * *
26370467 TAAAAAAAAATGATAGGGGATTATTCAAAGTATTTTTATCTAAAAATGTCTTGAATAATCCCT
1 TAAAAAAAAATTAAAAGAGATTATTCAAAGTATTTTTATCTAAAAATGTCTTGAATAAT-CCT
* * * * * * *
26370530 TATAAAAAAAATTAATGAA-A-ATTATTCAAGGCATTTCTATCAAAAAATATCTTAAATAATTCT
1 TA-AAAAAAAATTAA--AAGAGATTATTCAAAGTATTTTTATCTAAAAATGTCTTGAATAATCCT
* * *
26370593 TAATAAAAAATTAAAAGAGATTATTC-AAGATATTTTT-TGCTAAAAACGTTTTGAATAA-CCT
1 TAAAAAAAAATTAAAAGAGATTATTCAAAG-TATTTTTAT-CTAAAAATGTCTTGAATAATCCT
26370654 TA
1 TA
26370656 TTTAATTTTT
Statistics
Matches: 98, Mismatches: 21, Indels: 16
0.73 0.16 0.12
Matches are distributed among these distances:
60 2 0.02
61 8 0.08
62 37 0.38
63 6 0.06
64 44 0.45
66 1 0.01
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (62 bp):
TAAAAAAAAATTAAAAGAGATTATTCAAAGTATTTTTATCTAAAAATGTCTTGAATAATCCT
Found at i:26370677 original size:62 final size:62
Alignment explanation
Indices: 26370611--26370728 Score: 141
Period size: 63 Copynumber: 1.9 Consensus size: 62
26370601 AATTAAAAGA
* * * *
26370611 GATTATTCAA-G-ATATTTTTTGCTAAAAACGTTTTGAATAACCTTATTTAATTTTTTGTAACG
1 GATTATTCAATGTA-ATTTTTTGATAAAAACGTCTTAAATAACCTT-TTTAAATTTTTGTAACG
* * *
26370673 GATTATTGAATGTAATTTTTTGATAAAAATGTCTTAAATAATCTTTTTAAATTTTT
1 GATTATTCAATGTAATTTTTTGATAAAAACGTCTTAAATAACCTTTTTAAATTTTT
26370729 ATGAGTTTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
62 19 0.40
63 27 0.57
64 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (62 bp):
GATTATTCAATGTAATTTTTTGATAAAAACGTCTTAAATAACCTTTTTAAATTTTTGTAACG
Found at i:26370870 original size:143 final size:144
Alignment explanation
Indices: 26370607--26370894 Score: 340
Period size: 143 Copynumber: 2.0 Consensus size: 144
26370597 AAAAAATTAA
** * *
26370607 AAGAGATTATTCAAGATATTTTTTGCTAAAAACGTTTTGAATAACCTTATTTAATTTTTTGTAAC
1 AAGAGATTATTCAAGATATTTTTAACAAAAAACGTTTTGAATAACCTCATTTAATTTTTTGTAAC
* * * *
26370672 GGATTATTGAATGTAATTTTTTGATAAAAATGTCTTAAATAATCTTTTTAAATTTTTATGAGTTT
66 GAATTATTCAATGTAATTTTTTGATAAAAATATCTTAAATAATCTTCTTAAATTTTTATGAGTTT
*
26370737 -AGAGTTTAAGGTTT
131 AAGA-TTTAAGATTT
*
26370751 AAGA-ATTATTTAAGATATTTTTAAACAAAAATAC-TTTT-AATAACCTCATTTAATTTTTTGTA
1 AAGAGATTATTCAAGATATTTTT-AACAAAAA-ACGTTTTGAATAACCTCATTTAATTTTTTGTA
* * *
26370813 A-GAAATTATTCAA-G-ATATTTTTTAGGTAAAAATATTTTGAATAAT-TTACTTAAATTTTTAT
64 ACG-AATTATTCAATGTA-ATTTTTT-GATAAAAATATCTTAAATAATCTT-CTTAAATTTTTAT
26370874 GAGTTTAAGATTTAAGATTT
125 GAGTTTAAGATTTAAGATTT
26370894 A
1 A
26370895 CAATTTAAAA
Statistics
Matches: 124, Mismatches: 13, Indels: 15
0.82 0.09 0.10
Matches are distributed among these distances:
141 1 0.01
142 11 0.09
143 94 0.76
144 16 0.13
145 2 0.02
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.47
Consensus pattern (144 bp):
AAGAGATTATTCAAGATATTTTTAACAAAAAACGTTTTGAATAACCTCATTTAATTTTTTGTAAC
GAATTATTCAATGTAATTTTTTGATAAAAATATCTTAAATAATCTTCTTAAATTTTTATGAGTTT
AAGATTTAAGATTT
Found at i:26371070 original size:29 final size:29
Alignment explanation
Indices: 26371025--26371095 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
26371015 AATTTTTTAT
* *
26371025 AAATATTATTTAA-AATATTTTTTAATAAA
1 AAATA-TATTAAATAATATCTTTTAATAAA
*
26371054 AAATATATTAAATAATATCTTTTAATTAA
1 AAATATATTAAATAATATCTTTTAATAAA
26371083 AAAT-TAATTAAAT
1 AAATAT-ATTAAAT
26371096 TTGTTAATGC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 7 0.19
29 30 0.81
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (29 bp):
AAATATATTAAATAATATCTTTTAATAAA
Found at i:26375969 original size:22 final size:22
Alignment explanation
Indices: 26375944--26375996 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
26375934 TTTAAAATTG
*
26375944 TAATATTTAGTTTGATTTTAAT
1 TAATATTTAGTTTGATTTAAAT
*
26375966 TAATTTTTTA-TTTGATTTAAAT
1 TAA-TATTTAGTTTGATTTAAAT
26375988 TAA-ATTTAG
1 TAATATTTAG
26375997 ATGTTGAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 4 0.15
22 17 0.65
23 5 0.19
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (22 bp):
TAATATTTAGTTTGATTTAAAT
Found at i:26376889 original size:5 final size:5
Alignment explanation
Indices: 26376881--26376905 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26376871 AATAATTTAT
26376881 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
26376906 GTTTAAGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:26381241 original size:7 final size:7
Alignment explanation
Indices: 26381225--26381257 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
26381215 GAAAATTTGC
*
26381225 TCCAAAT
1 TCCAATT
26381232 TCCAATT
1 TCCAATT
26381239 TCCAATT
1 TCCAATT
26381246 TCCAATT
1 TCCAATT
26381253 TCCAA
1 TCCAA
26381258 AATGGTGGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (7 bp):
TCCAATT
Found at i:26382186 original size:16 final size:16
Alignment explanation
Indices: 26382163--26382202 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
26382153 AAATTATTTT
* *
26382163 AAAT-TTAATTTAATC
1 AAATATTAATTAAATA
26382178 AAATATTAATTAAATA
1 AAATATTAATTAAATA
26382194 AAATATTAA
1 AAATATTAA
26382203 AAATTAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATATTAATTAAATA
Found at i:26388074 original size:19 final size:19
Alignment explanation
Indices: 26388050--26388087 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
26388040 AAAAGTCTTT
*
26388050 GATGGGAACTAAGTTCCTC
1 GATGGGAACTAAGTACCTC
26388069 GATGGGAACTAAGTACCTC
1 GATGGGAACTAAGTACCTC
26388088 TGGGAACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (19 bp):
GATGGGAACTAAGTACCTC
Found at i:26388093 original size:17 final size:18
Alignment explanation
Indices: 26388051--26388094 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
26388041 AAAGTCTTTG
*
26388051 ATGGGAACTAAGTTCCTC
1 ATGGGAACTAAGTACCTC
26388069 GATGGGAACTAAGTACCTC
1 -ATGGGAACTAAGTACCTC
26388088 -TGGGAAC
1 ATGGGAAC
26388095 CAAAATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 7 0.29
19 17 0.71
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (18 bp):
ATGGGAACTAAGTACCTC
Found at i:26388416 original size:24 final size:25
Alignment explanation
Indices: 26388383--26388431 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
26388373 TGAAACTAAA
*
26388383 TCCAAATTTATTC-AATTCATCAAG
1 TCCAAATTTATTCTAAATCATCAAG
*
26388407 TCCAACTTTATTCTAAATCATCAAG
1 TCCAAATTTATTCTAAATCATCAAG
26388432 ACCTTTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.37, C:0.22, G:0.04, T:0.37
Consensus pattern (25 bp):
TCCAAATTTATTCTAAATCATCAAG
Found at i:26391448 original size:30 final size:30
Alignment explanation
Indices: 26391412--26391470 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
26391402 ATGATAAGAG
*
26391412 TTAGATCATGGCTTTGATTGCAGAGAAATT
1 TTAGATCATGGCTTTGATTGCAAAGAAATT
26391442 TTAGATCATGGCTTTGATTGCAAAGAAAT
1 TTAGATCATGGCTTTGATTGCAAAGAAAT
26391471 GTACACTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.36
Consensus pattern (30 bp):
TTAGATCATGGCTTTGATTGCAAAGAAATT
Found at i:26396106 original size:17 final size:17
Alignment explanation
Indices: 26396066--26396107 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
26396056 TACATTTGAG
*
26396066 CATTGT-ATTTTTTATT
1 CATTGTAATTTTTAATT
26396082 CATATGTAATTTTTAATT
1 CAT-TGTAATTTTTAATT
*
26396100 TATTGTAA
1 CATTGTAA
26396108 AATATAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 3 0.14
17 8 0.36
18 11 0.50
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.60
Consensus pattern (17 bp):
CATTGTAATTTTTAATT
Found at i:26396199 original size:16 final size:14
Alignment explanation
Indices: 26396164--26396209 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 14
26396154 AGTAACATAA
26396164 TTTTTA-TTTTTAT
1 TTTTTATTTTTTAT
*
26396177 TTGTTATTTATTATAT
1 TTTTTATTT-TT-TAT
26396193 TTTTTATTTTTTAT
1 TTTTTATTTTTTAT
26396207 TTT
1 TTT
26396210 GTTGTAGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 5 0.18
14 8 0.29
15 4 0.14
16 11 0.39
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (14 bp):
TTTTTATTTTTTAT
Found at i:26397133 original size:24 final size:24
Alignment explanation
Indices: 26397088--26397133 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
26397078 ATAAATAATA
*
26397088 AATAAATAAATAAATAAGAAAACC
1 AATAAATAAATAAAAAAGAAAACC
*
26397112 AATAAATAACA-AAAAAATAAAA
1 AATAAATAA-ATAAAAAAGAAAA
26397134 TAAAAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.15
Consensus pattern (24 bp):
AATAAATAAATAAAAAAGAAAACC
Found at i:26397996 original size:15 final size:17
Alignment explanation
Indices: 26397976--26398014 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
26397966 CCATTTAGTA
*
26397976 TTTTTTACC-TTTT-TT
1 TTTTTTACCATTTTCCT
26397991 TTTTTTACCATTTTCCT
1 TTTTTTACCATTTTCCT
26398008 TTTTTTA
1 TTTTTTA
26398015 TATAAAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
16 4 0.19
17 8 0.38
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTTACCATTTTCCT
Found at i:26399454 original size:23 final size:23
Alignment explanation
Indices: 26399419--26399481 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
26399409 AATTATATTC
*
26399419 ATAATAAAGTATTATATCACAGA
1 ATAATAAATTATTATATCACAGA
* **
26399442 ATAATTAATTATTATATCACTTA
1 ATAATAAATTATTATATCACAGA
*
26399465 ATAATCAATTATTATAT
1 ATAATAAATTATTATAT
26399482 TATTAAATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (23 bp):
ATAATAAATTATTATATCACAGA
Found at i:26399490 original size:23 final size:23
Alignment explanation
Indices: 26399419--26399544 Score: 80
Period size: 23 Copynumber: 5.4 Consensus size: 23
26399409 AATTATATTC
* * *
26399419 ATAATAAAGTATTATATCA-CAGA
1 ATAATAAATTATTATATTATTA-A
* *
26399442 ATAATTAATTATTATATCACTT-A
1 ATAATAAATTATTATATTA-TTAA
*
26399465 ATAATCAATTATTATATTATTAA
1 ATAATAAATTATTATATTATTAA
* *
26399488 ATAAATAAATAAAT-TATTATTAA
1 AT-AATAAATTATTATATTATTAA
* * *
26399511 ATAATAAAATATAAT-TTAACTAA
1 ATAATAAATTATTATATT-ATTAA
26399534 ATAACTAAATT
1 ATAA-TAAATT
26399545 TACATACAAT
Statistics
Matches: 82, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
22 11 0.13
23 58 0.71
24 13 0.16
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.40
Consensus pattern (23 bp):
ATAATAAATTATTATATTATTAA
Found at i:26399513 original size:19 final size:20
Alignment explanation
Indices: 26399489--26399559 Score: 60
Period size: 18 Copynumber: 3.7 Consensus size: 20
26399479 TATTATTAAA
* *
26399489 TAAATAAATAAATTATTA-T
1 TAAATAAATAAAATATAATT
26399508 TAAAT-AATAAAATATAATT
1 TAAATAAATAAAATATAATT
* *
26399527 TAACTAAAT-AACTA-AATT
1 TAAATAAATAAAATATAATT
*
26399545 TACATACAATAAAAT
1 TAAATA-AATAAAAT
26399560 TTTAATATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
18 18 0.44
19 17 0.41
20 6 0.15
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (20 bp):
TAAATAAATAAAATATAATT
Found at i:26399889 original size:112 final size:111
Alignment explanation
Indices: 26399684--26399903 Score: 368
Period size: 112 Copynumber: 2.0 Consensus size: 111
26399674 TTGTGAGGGT
*
26399684 AATTTGATTGGAAATTGGAATTGACTTGTTGTTGCGGTAGTACCTTAGTGGTACTGATACTAGTT
1 AATTTGATAGGAAATTGGAATTGACTTGTTGTTGCGGTAGTACCTTAGTGGTACTGATACTAGTT
* * * *
26399749 TAGTATAGGGTACTTTGTGGAGAGTGGAATTTGATGTTTTCCATAC
66 TAGTACAGGGTACTTTGCGAAGAATGGAATTTGATGTTTTCCATAC
* *
26399795 AATTTGATAGGAAATTGGAATTGACTTGTTGTTGCGGTAGTGTCGTTAGTGGTACTGATACTAGT
1 AATTTGATAGGAAATTGGAATTGACTTGTTGTTGCGGTAGT-ACCTTAGTGGTACTGATACTAGT
26399860 TTAGTACAGGGTACTTTGCGAAGAATGGAATTTGATGTTTTCCA
65 TTAGTACAGGGTACTTTGCGAAGAATGGAATTTGATGTTTTCCA
26399904 CAAAATTATT
Statistics
Matches: 101, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
111 40 0.40
112 61 0.60
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.39
Consensus pattern (111 bp):
AATTTGATAGGAAATTGGAATTGACTTGTTGTTGCGGTAGTACCTTAGTGGTACTGATACTAGTT
TAGTACAGGGTACTTTGCGAAGAATGGAATTTGATGTTTTCCATAC
Found at i:26399959 original size:66 final size:66
Alignment explanation
Indices: 26399853--26399980 Score: 193
Period size: 66 Copynumber: 1.9 Consensus size: 66
26399843 GTGGTACTGA
26399853 TACTAGTTTAGTACAGGGTACTTTGCGAAGAATGGAATTTGATGTTTTCCACAAAATTATTACCA
1 TACTAGTTTAGTACAGGGTACTTTGCGAAGAATGGAATTTGATGTTTTCCACAAAATTATTACCA
26399918 G
66 G
* * * * * * *
26399919 TACTAGTTTAGTATAGGGTGCTTTGTGGAGAATGGAATTTGATGTTTTTCATATAATTATTA
1 TACTAGTTTAGTACAGGGTACTTTGCGAAGAATGGAATTTGATGTTTTCCACAAAATTATTA
26399981 GTGCTATATT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (66 bp):
TACTAGTTTAGTACAGGGTACTTTGCGAAGAATGGAATTTGATGTTTTCCACAAAATTATTACCA
G
Found at i:26401648 original size:31 final size:31
Alignment explanation
Indices: 26401612--26401671 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
26401602 TAACACCTGT
*
26401612 TCAACATTATACAATAA-TCATTTTACTTTTG
1 TCAACATTATAAAATAACT-ATTTTACTTTTG
26401643 TCAACATTATAAAATAACTATTTTACTTT
1 TCAACATTATAAAATAACTATTTTACTTT
26401672 CTATCAGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.45
Consensus pattern (31 bp):
TCAACATTATAAAATAACTATTTTACTTTTG
Found at i:26402036 original size:15 final size:14
Alignment explanation
Indices: 26401998--26402035 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
26401988 TTTTACTATT
26401998 TAATTAAAATAAAA
1 TAATTAAAATAAAA
26402012 TAATCTAAAATATAAA
1 TAAT-TAAAATA-AAA
26402028 TAA-TAAAA
1 TAATTAAAA
26402036 AATTAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.41
15 7 0.32
16 6 0.27
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (14 bp):
TAATTAAAATAAAA
Found at i:26402159 original size:30 final size:31
Alignment explanation
Indices: 26402094--26402164 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
26402084 ATCCATCATT
**
26402094 ATAAAATAATTATTTTACCCTTTTTAACAGC
1 ATAAAATAATTATTTTACCCTTTTTAACAAA
* *
26402125 ATAAAATGATTATTTTA-CC-TTTTAATGAAA
1 ATAAAATAATTATTTTACCCTTTTTAA-CAAA
26402155 ATAAAATAAT
1 ATAAAATAAT
26402165 CTAAAATGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
29 6 0.18
30 12 0.35
31 16 0.47
ACGTcount: A:0.45, C:0.10, G:0.04, T:0.41
Consensus pattern (31 bp):
ATAAAATAATTATTTTACCCTTTTTAACAAA
Found at i:26403015 original size:2 final size:2
Alignment explanation
Indices: 26403008--26403037 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
26402998 GTAAATTTTG
26403008 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26403038 ATCTGAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:26406005 original size:26 final size:26
Alignment explanation
Indices: 26405968--26406020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26405958 ATATGTACCA
* *
26405968 TTTTTTCGTAATAACTCTATCTTTTT
1 TTTTTTCATAATAACTATATCTTTTT
26405994 TTTTTTCATAATAACTATATCTTTTT
1 TTTTTTCATAATAACTATATCTTTTT
26406020 T
1 T
26406021 CATTACTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.13, G:0.02, T:0.62
Consensus pattern (26 bp):
TTTTTTCATAATAACTATATCTTTTT
Found at i:26406984 original size:371 final size:369
Alignment explanation
Indices: 26406301--26409153 Score: 3280
Period size: 371 Copynumber: 7.7 Consensus size: 369
26406291 TATCTTCAAG
* * *
26406301 TGTCACGGACTTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTAT
1 TGTCACGGACCTAAGGAAGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCACTGGGGTAT
* * *
26406366 AAAAAGGTTCACACCATCTCCGTTTTGTGAGGCACCTTTTGTAGGATAAAACTGTGAGGCCAG-G
66 AAAAGGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCAGAG
* * * * * * *
26406430 GGGGTCAGAACGGATAATACCTCACAAGGGTGTGAACCGTGACGGTTAGGCTGATCTGGGATGCC
131 GGGCT-AGAGCGGACAATACCTCACAAGGGTGTGAACCGTGATGGTCAGGCTGATCTGGGACGTC
** * * *
26406495 AGAAAGGTGAATGCCCGGGTCTC-AGAGCCCCACGGGTTCGGAGCTTAAGTCTCGATCAGTGACA
195 -GAAAGGTGAATGCCCGGGTCTCGA-AG-CCTGCGAGTTCGGAGCTTAAGTCTCGACCCGTGACA
*
26406559 AGTGGTATTAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGCAGG
257 AGTGGTATCAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGCAGG
* * * *
26406624 GAGGCCAGCCTCCGTGACGAGGATGTCACGAGGTTGGATGCGAAAGAA
322 GTGGCCAGCCTCCGTGACGAGGACGTCACGAGGTTGGGTGCGGAAGAA
* *
26406672 TGTCACGGACCTAAGGAAGAGTCCTAAATCTCACATCGAACATAATAGGAGGGTCACTGGGGTAT
1 TGTCACGGACCTAAGGAAGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCACTGGGGTAT
* *
26406737 AAAAGGGTTCACACCATCTCCGTCTTGTGAGGTACCTTTTGTAGGATAAAACCGTGAGGCCAGCG
66 AAAAGGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCAGAG
* * ** **
26406802 GGGCTAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGATGGTCAGGTTGATTTGAAACACCA
131 GGGCTAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGATGGTCAGGCTGATCTGGGACGTC-
* * * * * * *
26406867 GAAAGGTGAATGTCCGGGTCTCGAAGCTGTGCGAATTCGGAGCTTAAGTCTCAACTCATGATAAG
195 GAAAGGTGAATGCCCGGGTCTCGAAGC-CTGCGAGTTCGGAGCTTAAGTCTCGACCCGTGACAAG
* *
26406932 TGGTATCAGAGTCAGTCCTATACCGTTCGATCTACGTCGAGCACCTCGAGGTAGGTAGGCAGACA
259 TGGTATCAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTA-G--G-CA
* * *
26406997 GGGTGGCCAGCCTCCGTGACGAGGACGTCACTAGGTTGGGTGAGAAAGAA
320 GGGTGGCCAGCCTCCGTGACGAGGACGTCACGAGGTTGGGTGCGGAAGAA
* *
26407047 TGTCACGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTAT
1 TGTCACGGACCTAAGGAAGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCACTGGGGTAT
* * *** *
26407112 AAAAGGGTTCACACCATTTTCGTCTTGTGAGGCACCTTTTGTAGGATAAAATTATGAGACCAGAG
66 AAAAGGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCAGAG
* * * ** * * * *
26407177 GGGTTAGAGCAGATAATACCTCACAAGGGTGTGAACTATGACGGACAGACTGATCTGGGACATCG
131 GGGCTAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGATGGTCAGGCTGATCTGGGACGTCG
* * * * *
26407242 AAAGGGTGAATGCCCGGGTCTCGAAGCCACGCGGGTTCAGAGCTTGAGTCTCGACTCGTGACAAG
196 AAA-GGTGAATGCCCGGGTCTCGAAGCC-TGCGAGTTCGGAGCTTAAGTCTCGACCCGTGACAAG
* * * * * * * *
26407307 TGATATCAAAACCAGCCCTAAATCATTCGATCCACGTCGAGCACTTCGAGAG-AGGTAGGCAGGG
259 TGGTATCAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAG-GTAGGTAGGCAGGG
* * *
26407371 TGGCCAGCCTCTGTGACGAGGACGTCACGAGATTGGGTGCGGGAGAA
323 TGGCCAGCCTCCGTGACGAGGACGTCACGAGGTTGGGTGCGGAAGAA
* *
26407418 TGTCACGGA-CTAAAGGAGGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCATTGGGGTA
1 TGTCACGGACCT-AAGGAAGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCACTGGGGTA
* * **
26407482 TAAAAGGGTTCACACCATTTTCACCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCAGA
65 TAAAAGGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCAGA
* ** * *
26407547 GGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGT-A-GCAGAAAAGTTGATCTGGGACG
130 GGGGCTAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGATG--GTCAGGCTGATCTGGGACG
* * * * *
26407610 TCGGAAGGGTGAATGCCCGGGTTTC-AGAGTCAC-GTGAATTCGAAGCTTAAGTCTCGACCCGTG
193 TC-GAAAGGTGAATGCCCGGGTCTCGA-AG-C-CTGCGAGTTCGGAGCTTAAGTCTCGACCCGTG
* * * * * ** * * *
26407673 ACAAGTGATATCAGAGCCAGCCCTAAATCGTTCGATCTACACCAAGCACTTCGAGGGAGGTAGGC
254 ACAAGTGGTATCAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGC
* * * *
26407738 AGGGTGGTC-GACCTTCGTGATGA-GAGCGTCACGAGGTTGGGTACGGAAGAA
319 AGGGTGGCCAG-CCTCCGTGACGAGGA-CGTCACGAGGTTGGGTGCGGAAGAA
* ** *
26407789 TGTCACAGACCTAAGGGGGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCATTGGGGTAT
1 TGTCACGGACCTAAGGAAGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCACTGGGGTAT
** * * * * *
26407854 AAAAGGGTTCACACCATCTCCGTCTTGTGAGGCGTCTTTTGTAAGACAAAATCTTGAGGCCAGGG
66 AAAAGGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCAGAG
* * * * *
26407919 GGGCCAAAGCGGATAATACCTCACAAGGGTGTGAACCGTGGCA-AGT-AGGCTGATCTGAGACGT
131 GGGCTAGAGCGGACAATACCTCACAAGGGTGTGAACCGT-G-ATGGTCAGGCTGATCTGGGACGT
* * * *
26407982 CGGAAGGGTGAATGCCCAGGTCTCGAAGCCATGCGGGTTTGGAGCTTAAGTCTCGACCCGTGACA
194 C-GAAAGGTGAATGCCCGGGTCTCGAAGCC-TGCGAGTTCGGAGCTTAAGTCTCGACCCGTGACA
* * * * *
26408047 AGTGATATTAGAGCCAGTCTTATACTGTTCGATCCACATCGAGCACCTCGAGGTAGGTAGGCAGG
257 AGTGGTATCAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGCAGG
* *
26408112 GTGGCTAGCCTCCGTGATGAGGACGTCACGAGGTTGGGTGTCGG-AGAA
322 GTGGCCAGCCTCCGTGACGAGGACGTCACGAGGTTGGGTG-CGGAAGAA
* *
26408160 TGTCACGGACCTAAGAAAGAGTCCTGAATCTCACATCGAACATAATAGAAAGGTCACTGGGGTAT
1 TGTCACGGACCTAAGGAAGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCACTGGGGTAT
* * * * * *
26408225 AAAAGGGTTCACACCATTTCTGCCTTATGAGGTACCTTTTGTAGGACAAAACCGTGAGGCCATGA
66 AAAAGGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCA-GA
* * * *
26408290 GGGGTTAGAGCGGACAATACCTCACAAGGGTGTGAACC------GT--GGCTGATTTGGAATGTC
130 GGGGCTAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGATGGTCAGGCTGATCTGGGACGTC
* * * * * *
26408347 GAAAGGGTGAATACCCGGGTCTCGGAG-TTGCATGAGTTCGAAGCTTAAGTTTCAACCCGTGACA
195 GAAA-GGTGAATGCCCGGGTCTCGAAGCCTGC--GAGTTCGGAGCTTAAGTCTCGACCCGTGACA
* * * * * * *
26408411 AGTGGTATCAGAGCCAGCCCTAAATCGTTCGATCCACGCCAAGCACTTCGAGGGAGGTAGGCAGG
257 AGTGGTATCAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGCAGG
* * * * *
26408476 GTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGATGTGGGAGAA
322 GTGGCCAGCCTCCGTGACGAGGACGTCACGAGGTTGGGTGCGGAAGAA
* * *
26408524 TGTCACGGACCTAATGG-GGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGAGGTA
1 TGTCACGGACCTAA-GGAAGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCACTGGGGTA
* * * * *
26408588 TAAAAAGGTTCACACCATCTTCGCCTTATGAGGCACCTTTTGTAGGATAAAATCGTGAGGCCAG-
65 TAAAAGGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCAGA
* * *
26408652 GGGGGTCAGAGCGGATAATACCTCACAAGGGTGTGAACCGTGGTGGTCAGGCTGAT-TCGGGACG
130 GGGGCT-AGAGCGGACAATACCTCACAAGGGTGTGAACCGTGATGGTCAGGCTGATCT-GGGACG
*
26408716 TCGAAAGGGTGAATGCCCGAGTCTC-AGAGCC-GCGTAAGTTCGGAGCTTAAGTCTCGACCCGTG
193 TCGAAA-GGTGAATGCCCGGGTCTCGA-AGCCTGCG--AGTTCGGAGCTTAAGTCTCGACCCGTG
* * * *
26408779 ACAAGTGGTATTAGAGCTAGTCCTATACCGTTCGATCCACGCCGAGCACATCGAGGTAGGTAGGC
254 ACAAGTGGTATCAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGC
* * * *
26408844 AGGGTGGCCAGCCTCCGTGATGAAGACGTCACGAGATTGGGTGCCGAAGAA
319 AGGGTGGCCAGCCTCCGTGACGAGGACGTCACGAGGTTGGGTGCGGAAGAA
* *
26408895 TGTCACGGACCTAAGGAAGAGTCTTGAATCTCACATCGAACATAATAGAAAGGTCACTGGGGTAT
1 TGTCACGGACCTAAGGAAGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCACTGGGGTAT
* * * * *
26408960 AAAAAGGTTCACACCATCTTCGTCTTGTGAGGCACCTTTTGTAAGACAAAACCGTGAGGTCATGA
66 AAAAGGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCA-GA
* * * * * * * * *
26409025 GAGGCCAGAGCGGACAATACCTCACAAGGGTATGAACCGTGGTAAG-AAGACTGATCTGGAACAT
130 GGGGCTAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGAT-GGTCAGGCTGATCTGGGACGT
* * *
26409089 CGAAAGGGTGAATGCCTGGGTCTCGGAGTCGC-GCGGGTTCGGAGCTTAAGTCTCGACCCGTGAC
194 CGAAA-GGTGAATGCCCGGGTCTCGAAG-C-CTGCGAGTTCGGAGCTTAAGTCTCGACCCGTGAC
26409153 A
256 A
26409154 CAAGTTCTAT
Statistics
Matches: 2133, Mismatches: 291, Indels: 115
0.84 0.11 0.05
Matches are distributed among these distances:
362 8 0.00
363 37 0.02
364 263 0.12
365 3 0.00
369 5 0.00
370 13 0.01
371 1314 0.62
372 158 0.07
373 7 0.00
374 11 0.01
375 313 0.15
376 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (369 bp):
TGTCACGGACCTAAGGAAGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCACTGGGGTAT
AAAAGGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCAGAG
GGGCTAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGATGGTCAGGCTGATCTGGGACGTCG
AAAGGTGAATGCCCGGGTCTCGAAGCCTGCGAGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTG
GTATCAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGCAGGGTGG
CCAGCCTCCGTGACGAGGACGTCACGAGGTTGGGTGCGGAAGAA
Found at i:26407736 original size:746 final size:739
Alignment explanation
Indices: 26406301--26409153 Score: 3682
Period size: 735 Copynumber: 3.8 Consensus size: 739
26406291 TATCTTCAAG
* *
26406301 TGTCACGGACTTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTAT
1 TGTCACGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTAT
* *
26406366 AAAAAGGTTCACACCATCTCCGTTTTGTGAGGCACCTTTTGTAGGATAAAACTGTGAGGCCAGGG
66 AAAAAGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAATTGTGAGGCCAGGG
* ** * *
26406431 GGGTCAGAACGGATAATACCTCACAAGGGTGTGAACCGTGACGGTTAGGCTGATCTGGGATGCCA
131 GGGTCAGAGCGGATAATACCTCACAAGGGTGTGAACCGTGACGGACAGGCTGATCTGGGACGTC-
* * * *
26406496 GAAA-GGTGAATGCCCGGGTCTCAGAGCCCCACGGGTTCGGAGCTTAAGTCTCGATCAGTGACAA
195 GAAAGGGTGAATGCCCGGGTCTCAGAGCCACGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAA
*
26406560 GTGGTATTAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGCAGGG
260 GTGATATTAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGCAGGG
* * * * *
26406625 AGGCCAGCCTCCGTGACGAGGATGTCACGAGGTTGGATGCGAAAGAATGTCACGGACCTAAGGAA
325 TGGCCAGCCTCCGTGACGAGGACGTCACGAGATTGGGTGCGGAAGAATGTCACGGACCTAAGGAA
* * *
26406690 GAGTCCTAAATCTCACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCATC
390 GAGTCCTGAATCTCACATCGAACATAATAGAAAGGTCACTGGGGTATAAAAGGGTTCACACCATC
* * * * * *
26406755 TCCGTCTTGTGAGGTACCTTTTGTAGGATAAAACCGTGAGGCCA-GCGGGGCTAGAGCGGACAAT
455 TTCGCCTTGTGAGGCACCTTTTGTAGGACAAAACCGTGAGGCCATGAGGGGCCAGAGCGGACAAT
* * * * * * *
26406819 ACCTCACAAGGGTGTGAACCGTGATGGTCAGGTTGATTTGAAACACCAGAAA-GGTGAATGTCCG
520 ACCTCACAAGGGTGTGAACCGTGA--G-AAAGCTGATCTGGAACATC-GAAAGGGTGAATGCCCG
* * * * * * * *
26406883 GGTCTCGAAG-CTGTGCGAATTCGGAGCTTAAGTCTCAACTCATGATAAGTGGTATCAGAGTCAG
581 GGTCTCGGAGTC-GCGTGAATTCGAAGCTTAAGTCTCAACCCGTGACAAGTGGTATCAGAGCCAG
* * * * * * *
26406947 TCCTATACCGTTCGATCTACGTCGAGCACCTCGAGGTAGGTAGGCAGACAGGGTGGCCAGCCTCC
645 CCCTAAATCGTTCGATCTACGCCAAGCACTTCGAGGGAGGTA-G--G-CAGGGTGGCC-GCCTCC
* *
26407012 GTGACGAGGACGTCACTAGGTTGGGTGAGAAAGAA
705 GTGACGAGGACGTCACGAGGTTGGGTGAGGAAGAA
*
26407047 TGTCACGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCACTGGGGTAT
1 TGTCACGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTAT
* * * * * *
26407112 AAAAGGGTTCACACCATTTTCGTCTTGTGAGGCACCTTTTGTAGGATAAAATTATGAGACCAGAG
66 AAAAAGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAATTGTGAGGCCAGGG
* * ** * *
26407177 GGGTTAGAGCAGATAATACCTCACAAGGGTGTGAACTATGACGGACAGACTGATCTGGGACATCG
131 GGGTCAGAGCGGATAATACCTCACAAGGGTGTGAACCGTGACGGACAGGCTGATCTGGGACGTCG
* * *
26407242 AAAGGGTGAATGCCCGGGTCTC-GAAGCCACGCGGGTTCAGAGCTTGAGTCTCGACTCGTGACAA
196 AAAGGGTGAATGCCCGGGTCTCAG-AGCCACGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAA
* * * * * * * *
26407306 GTGATATCAAAACCAGCCCTAAATCATTCGATCCACGTCGAGCACTTCGAGAG-AGGTAGGCAGG
260 GTGATATTAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAG-GTAGGTAGGCAGG
* *
26407370 GTGGCCAGCCTCTGTGACGAGGACGTCACGAGATTGGGTGCGGGAGAATGTCACGGA-CTAAAGG
324 GTGGCCAGCCTCCGTGACGAGGACGTCACGAGATTGGGTGCGGAAGAATGTCACGGACCT-AAGG
* * *
26407434 AGGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCATTGGGGTATAAAAGGGTTCACACCA
388 AAGAGTCCTGAATCTCACATCGAACATAATAGAAAGGTCACTGGGGTATAAAAGGGTTCACACCA
* * *
26407499 TTTTCACCTTGTGAGGCACCTTTTGTAGGATAAAACCGTGAGGCCA-GAGGGGCCAGAGCGGACA
453 TCTTCGCCTTGTGAGGCACCTTTTGTAGGACAAAACCGTGAGGCCATGAGGGGCCAGAGCGGACA
* * * *
26407563 ATACCTCACAAGGGTGTGAACCGTAGCAGAAAAGTTGATCTGGGACGTCGGAAGGGTGAATGCCC
518 ATACCTCACAAGGGTGTGAACCGT-G-AG-AAAGCTGATCTGGAACATCGAAAGGGTGAATGCCC
* * * * *
26407628 GGGTTTCAGAGTCACGTGAATTCGAAGCTTAAGTCTCGACCCGTGACAAGTGATATCAGAGCCAG
580 GGGTCTCGGAGTCGCGTGAATTCGAAGCTTAAGTCTCAACCCGTGACAAGTGGTATCAGAGCCAG
* * *
26407693 CCCTAAATCGTTCGATCTACACCAAGCACTTCGAGGGAGGTAGGCAGGGTGGTCGACCTTCGTGA
645 CCCTAAATCGTTCGATCTACGCCAAGCACTTCGAGGGAGGTAGGCAGGGTGGCCG-CCTCCGTGA
*
26407758 TGA-GAGCGTCACGAGGTTGGGT-ACGGAAGAA
709 CGAGGA-CGTCACGAGGTTGGGTGA-GGAAGAA
* ** * *
26407789 TGTCACAGACCTAAGGGGGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTCATTGGGGTAT
1 TGTCACGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTAT
* ** * *
26407854 AAAAGGGTTCACACCATCTCCGTCTTGTGAGGCGTCTTTTGTAAGACAAAATCT-TGAGGCCAGG
66 AAAAAGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAAT-TGTGAGGCCAGG
* * * * * *
26407918 GGGGCCAAAGCGGATAATACCTCACAAGGGTGTGAACCGTGGC-AAGTAGGCTGATCTGAGACGT
130 GGGGTCAGAGCGGATAATACCTCACAAGGGTGTGAACCGTGACGGA-CAGGCTGATCTGGGACGT
* * * *
26407982 CGGAAGGGTGAATGCCCAGGTCTC-GAAGCCATGCGGGTTTGGAGCTTAAGTCTCGACCCGTGAC
194 CGAAAGGGTGAATGCCCGGGTCTCAG-AGCCACGCGGGTTCGGAGCTTAAGTCTCGACCCGTGAC
* * *
26408046 AAGTGATATTAGAGCCAGTCTTATACTGTTCGATCCACATCGAGCACCTCGAGGTAGGTAGGCAG
258 AAGTGATATTAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGCAG
* * *
26408111 GGTGGCTAGCCTCCGTGATGAGGACGTCACGAGGTTGGGTGTCGG-AGAATGTCACGGACCTAAG
323 GGTGGCCAGCCTCCGTGACGAGGACGTCACGAGATTGGGTG-CGGAAGAATGTCACGGACCTAAG
*
26408175 AAAGAGTCCTGAATCTCACATCGAACATAATAGAAAGGTCACTGGGGTATAAAAGGGTTCACACC
387 GAAGAGTCCTGAATCTCACATCGAACATAATAGAAAGGTCACTGGGGTATAAAAGGGTTCACACC
* * **
26408240 AT-TTCTGCCTTATGAGGTACCTTTTGTAGGACAAAACCGTGAGGCCATGAGGGGTTAGAGCGGA
452 ATCTTC-GCCTTGTGAGGCACCTTTTGTAGGACAAAACCGTGAGGCCATGAGGGGCCAGAGCGGA
* ** *
26408304 CAATACCTCACAAGGGTGTGAACCGT--G---GCTGATTTGGAATGTCGAAAGGGTGAATACCCG
516 CAATACCTCACAAGGGTGTGAACCGTGAGAAAGCTGATCTGGAACATCGAAAGGGTGAATGCCCG
* * * *
26408364 GGTCTCGGAGTTGCATGAGTTCGAAGCTTAAGTTTCAACCCGTGACAAGTGGTATCAGAGCCAGC
581 GGTCTCGGAGTCGCGTGAATTCGAAGCTTAAGTCTCAACCCGTGACAAGTGGTATCAGAGCCAGC
*
26408429 CCTAAATCGTTCGATCCACGCCAAGCACTTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGTGAC
646 CCTAAATCGTTCGATCTACGCCAAGCACTTCGAGGGAGGTAGGCAGGGTGGCC-GCCTCCGTGAC
* * * *
26408494 GAGGGCGTCACGAGGTTGGATGTGGGAGAA
710 GAGGACGTCACGAGGTTGGGTGAGGAAGAA
* *
26408524 TGTCACGGACCTAATGG-GGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGAGGTA
1 TGTCACGGACCTAA-GGAAGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTA
* * * *
26408588 TAAAAAGGTTCACACCATCTTCGCCTTATGAGGCACCTTTTGTAGGATAAAATCGTGAGGCCAGG
65 TAAAAAGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAATTGTGAGGCCAGG
** *
26408653 GGGGTCAGAGCGGATAATACCTCACAAGGGTGTGAACCGTGGTGGTCAGGCTGAT-TCGGGACGT
130 GGGGTCAGAGCGGATAATACCTCACAAGGGTGTGAACCGTGACGGACAGGCTGATCT-GGGACGT
* * ***
26408717 CGAAAGGGTGAATGCCCGAGTCTCAGAGCCGCGTAAGTTCGGAGCTTAAGTCTCGACCCGTGACA
194 CGAAAGGGTGAATGCCCGGGTCTCAGAGCCACGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACA
* * * *
26408782 AGTGGTATTAGAGCTAGTCCTATACCGTTCGATCCACGCCGAGCACATCGAGGTAGGTAGGCAGG
259 AGTGATATTAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGCAGG
* * *
26408847 GTGGCCAGCCTCCGTGATGAAGACGTCACGAGATTGGGTGCCGAAGAATGTCACGGACCTAAGGA
324 GTGGCCAGCCTCCGTGACGAGGACGTCACGAGATTGGGTGCGGAAGAATGTCACGGACCTAAGGA
* *
26408912 AGAGTCTTGAATCTCACATCGAACATAATAGAAAGGTCACTGGGGTATAAAAAGGTTCACACCAT
389 AGAGTCCTGAATCTCACATCGAACATAATAGAAAGGTCACTGGGGTATAAAAGGGTTCACACCAT
* * * *
26408977 CTTCGTCTTGTGAGGCACCTTTTGTAAGACAAAACCGTGAGGTCATGAGAGGCCAGAGCGGACAA
454 CTTCGCCTTGTGAGGCACCTTTTGTAGGACAAAACCGTGAGGCCATGAGGGGCCAGAGCGGACAA
* *
26409042 TACCTCACAAGGGTATGAACCGTG-GTAAGAAGACTGATCTGGAACATCGAAAGGGTGAATGCCT
519 TACCTCACAAGGGTGTGAACCGTGAG--A-AAG-CTGATCTGGAACATCGAAAGGGTGAATGCCC
* ** * *
26409106 GGGTCTCGGAGTCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACA
580 GGGTCTCGGAGTCGCGTGAATTCGAAGCTTAAGTCTCAACCCGTGACA
26409154 CAAGTTCTAT
Statistics
Matches: 1835, Mismatches: 236, Indels: 75
0.86 0.11 0.03
Matches are distributed among these distances:
734 3 0.00
735 637 0.35
736 9 0.00
739 1 0.00
741 9 0.00
742 466 0.25
743 114 0.06
745 11 0.01
746 581 0.32
747 3 0.00
748 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (739 bp):
TGTCACGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTAT
AAAAAGGTTCACACCATCTCCGTCTTGTGAGGCACCTTTTGTAGGATAAAATTGTGAGGCCAGGG
GGGTCAGAGCGGATAATACCTCACAAGGGTGTGAACCGTGACGGACAGGCTGATCTGGGACGTCG
AAAGGGTGAATGCCCGGGTCTCAGAGCCACGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAG
TGATATTAGAGCCAGTCCTATACCGTTCGATCCACGTCGAGCACCTCGAGGTAGGTAGGCAGGGT
GGCCAGCCTCCGTGACGAGGACGTCACGAGATTGGGTGCGGAAGAATGTCACGGACCTAAGGAAG
AGTCCTGAATCTCACATCGAACATAATAGAAAGGTCACTGGGGTATAAAAGGGTTCACACCATCT
TCGCCTTGTGAGGCACCTTTTGTAGGACAAAACCGTGAGGCCATGAGGGGCCAGAGCGGACAATA
CCTCACAAGGGTGTGAACCGTGAGAAAGCTGATCTGGAACATCGAAAGGGTGAATGCCCGGGTCT
CGGAGTCGCGTGAATTCGAAGCTTAAGTCTCAACCCGTGACAAGTGGTATCAGAGCCAGCCCTAA
ATCGTTCGATCTACGCCAAGCACTTCGAGGGAGGTAGGCAGGGTGGCCGCCTCCGTGACGAGGAC
GTCACGAGGTTGGGTGAGGAAGAA
Found at i:26413473 original size:15 final size:15
Alignment explanation
Indices: 26413446--26413484 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
26413436 ATTTATTATC
26413446 TATAATAAAATAAAA
1 TATAATAAAATAAAA
26413461 TATAA-AAATATAAAA
1 TATAATAAA-ATAAAA
26413476 TAATAATAA
1 T-ATAATAA
26413485 TAATGATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 3 0.14
15 12 0.57
16 4 0.19
17 2 0.10
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
TATAATAAAATAAAA
Found at i:26414801 original size:25 final size:25
Alignment explanation
Indices: 26414767--26414818 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
26414757 GAAAGAGACC
26414767 GAGAAAGCTTTGCTGTATGTCAGTA
1 GAGAAAGCTTTGCTGTATGTCAGTA
26414792 GAGAAAGCTTTGCTGTATGTCAGTA
1 GAGAAAGCTTTGCTGTATGTCAGTA
26414817 GA
1 GA
26414819 TTGTATTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.31
Consensus pattern (25 bp):
GAGAAAGCTTTGCTGTATGTCAGTA
Found at i:26421700 original size:2 final size:2
Alignment explanation
Indices: 26421693--26421726 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
26421683 TCAGACTTAC
*
26421693 CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
26421727 TGTTCTATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:26431279 original size:19 final size:22
Alignment explanation
Indices: 26431229--26431279 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 22
26431219 ACATATTTTT
26431229 ATAAAATTTAATTATATACTTAA
1 ATAAAA-TTAATTATATACTTAA
* *
26431252 CTAATATTAATT-TA-A-TTAA
1 ATAAAATTAATTATATACTTAA
26431271 ATAAAATTA
1 ATAAAATTA
26431280 TAAAAATAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
19 11 0.46
20 1 0.04
21 2 0.08
22 6 0.25
23 4 0.17
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (22 bp):
ATAAAATTAATTATATACTTAA
Found at i:26431383 original size:22 final size:22
Alignment explanation
Indices: 26431345--26431407 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
26431335 AATGTTTTTC
**
26431345 AAAT-AATATTACCATATTATG
1 AAATAAATATTATAATATTATG
*
26431366 AAATAAATATTATAATATTTATT
1 AAATAAATATTATAATA-TTATG
26431389 AAA-ATAATATT-TAATATTA
1 AAATA-AATATTATAATATTA
26431408 AAATATTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 7 0.19
22 16 0.44
23 13 0.36
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (22 bp):
AAATAAATATTATAATATTATG
Found at i:26431574 original size:3 final size:3
Alignment explanation
Indices: 26431568--26431792 Score: 198
Period size: 3 Copynumber: 75.0 Consensus size: 3
26431558 GATTTTCATC
* *
26431568 ATT ATT ATT ACT ATT ATT -TT -TT ATT ATT ATT AGT ATT ATT ATTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT
* * * *
26431612 GTT ATT ATT ATT ACTGT AGT A-T AGT ATGCT ATT TTT ATT ATT ATT ATT
1 ATT ATT ATT ATT A-T-T ATT ATT ATT AT--T ATT ATT ATT ATT ATT ATT
*
26431660 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T AGT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
26431706 ATT ATA ATAT AGT ATT ATAT GTT ATT ATT ATT A-T ATT ATT ATT A-T
1 ATT ATT AT-T ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
26431751 AGTT ATT AGT ATT ATT ACTT -TT ATT ATT -TT TTT ATT ATT ATT
1 A-TT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
26431793 TTTTTTTTTT
Statistics
Matches: 185, Mismatches: 20, Indels: 34
0.77 0.08 0.14
Matches are distributed among these distances:
2 17 0.09
3 153 0.83
4 10 0.05
5 5 0.03
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:26432276 original size:19 final size:21
Alignment explanation
Indices: 26432244--26432285 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
26432234 ATCTGGAAAA
26432244 TTTGAGAAATTTTTAGGTTTT
1 TTTGAGAAATTTTTAGGTTTT
*
26432265 TTTGA-AAA-TTTTGGGTTTT
1 TTTGAGAAATTTTTAGGTTTT
26432284 TT
1 TT
26432286 AGGATGAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
20 3 0.15
21 5 0.25
ACGTcount: A:0.21, C:0.00, G:0.19, T:0.60
Consensus pattern (21 bp):
TTTGAGAAATTTTTAGGTTTT
Found at i:26433555 original size:11 final size:11
Alignment explanation
Indices: 26433506--26433565 Score: 60
Period size: 11 Copynumber: 5.9 Consensus size: 11
26433496 TTATGACATG
26433506 TAATATTAAAA
1 TAATATTAAAA
26433517 -AATTATTAAAA
1 TAA-TATTAAAA
26433528 TAA-ATT---A
1 TAATATTAAAA
26433535 -AATATTAAAA
1 TAATATTAAAA
*
26433545 TAATTTTAAAA
1 TAATATTAAAA
26433556 TAATATTAAA
1 TAATATTAAA
26433566 TACTAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
6 2 0.05
7 4 0.10
10 6 0.15
11 26 0.65
12 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATATTAAAA
Found at i:26433564 original size:29 final size:29
Alignment explanation
Indices: 26433507--26433693 Score: 152
Period size: 29 Copynumber: 6.5 Consensus size: 29
26433497 TATGACATGT
*
26433507 AATATTAAAAAATTATTAAAATAA-ATTA
1 AATATTAAAATATTATTAAAATAATATTA
26433535 AATATTAAAATAATT-TTAAAATAATATTA
1 AATATTAAAAT-ATTATTAAAATAATATTA
* * *
26433564 AATACTAAAATATTA-CAAAATTAATATTT
1 AATATTAAAATATTATTAAAA-TAATATTA
** *
26433593 GGTA-TAAAATATGT-TTAAAATAATACTA
1 AATATTAAAATAT-TATTAAAATAATATTA
* * * *
26433621 AATATGAAAATATTAGTAAAATAATTTTT
1 AATATTAAAATATTATTAAAATAATATTA
** * *
26433650 AGGATTAAATTATTATTTAAATAATATTAA
1 AATATTAAAATATTATTAAAATAATATT-A
*
26433680 AATTTTAAAA-ATTA
1 AATATTAAAATATTA
26433694 AAATAACAAT
Statistics
Matches: 122, Mismatches: 28, Indels: 17
0.73 0.17 0.10
Matches are distributed among these distances:
28 43 0.35
29 73 0.60
30 6 0.05
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40
Consensus pattern (29 bp):
AATATTAAAATATTATTAAAATAATATTA
Found at i:26433601 original size:57 final size:56
Alignment explanation
Indices: 26433540--26433680 Score: 153
Period size: 57 Copynumber: 2.4 Consensus size: 56
26433530 AATTAAATAT
26433540 TAAAATAATTTTAAAATAATATTAAATACT-AAAATATTA-CAAAATTAATATTT-GGTA
1 TAAAAT-ATTTTAAAATAATATTAAATA-TGAAAATATTAGCAAAA-TAATATTTAGG-A
* * *
26433597 TAAAATATGTTTAAAATAATACTAAATATGAAAATATTAGTAAAATAATTTTTAGGA
1 TAAAATAT-TTTAAAATAATATTAAATATGAAAATATTAGCAAAATAATATTTAGGA
* *
26433654 TTAAATTATTATTTAAATAATATTAAA
1 -TAAAATATT-TTAAAATAATATTAAA
26433681 ATTTTAAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
56 3 0.04
57 42 0.58
58 27 0.38
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (56 bp):
TAAAATATTTTAAAATAATATTAAATATGAAAATATTAGCAAAATAATATTTAGGA
Found at i:26433756 original size:22 final size:23
Alignment explanation
Indices: 26433709--26433807 Score: 66
Period size: 22 Copynumber: 4.4 Consensus size: 23
26433699 ACAATAAATT
* * *
26433709 ATTATAAAATTAATT-AATGAAT
1 ATTATAATATTAATTAAATTAAA
26433731 ATTATAATATT-ATTAAATTAAA
1 ATTATAATATTAATTAAATTAAA
*
26433753 ATTA-AATATTAAAATAACATTAAAA
1 ATTATAATATT-AATTAA-ATT-AAA
** *
26433778 ATTA-AAT-TTTGTTAAATTAAT
1 ATTATAATATTAATTAAATTAAA
26433799 ATT-TAATAT
1 ATTATAATAT
26433808 AAAAAGGTCA
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
21 17 0.27
22 23 0.37
23 7 0.11
24 5 0.08
25 10 0.16
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTATAATATTAATTAAATTAAA
Found at i:26433764 original size:18 final size:18
Alignment explanation
Indices: 26433741--26433785 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
26433731 ATTATAATAT
26433741 TATTAAATTAAAATTAAA
1 TATTAAATTAAAATTAAA
* *
26433759 TATTAAAATAACATTAAA
1 TATTAAATTAAAATTAAA
*
26433777 AATTAAATT
1 TATTAAATT
26433786 TTGTTAAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
TATTAAATTAAAATTAAA
Found at i:26433892 original size:22 final size:22
Alignment explanation
Indices: 26433801--26433894 Score: 67
Period size: 22 Copynumber: 4.4 Consensus size: 22
26433791 AAATTAATAT
*
26433801 TTAATA-TAAAAAGGTCATTAAA
1 TTAATATTAAAAA-ATCATTAAA
*
26433823 TTAATATT--TAAATC-TTAAAA
1 TTAATATTAAAAAATCATT-AAA
*
26433843 TTGAAATATTATAAAAAT-A--ATA
1 TT--AATATTA-AAAAATCATTAAA
26433865 TTAATATTAAAAAATCATTAAA
1 TTAATATTAAAAAATCATTAAA
26433887 TTAATATT
1 TTAATATT
26433895 TATTAAAAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 22
0.67 0.06 0.27
Matches are distributed among these distances:
19 8 0.14
20 15 0.27
21 2 0.04
22 26 0.46
23 1 0.02
25 4 0.07
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.39
Consensus pattern (22 bp):
TTAATATTAAAAAATCATTAAA
Found at i:26433929 original size:10 final size:10
Alignment explanation
Indices: 26433914--26434052 Score: 66
Period size: 10 Copynumber: 13.4 Consensus size: 10
26433904 TATTACCAAA
26433914 TATTTAATAT
1 TATTTAATAT
* *
26433924 TCTTTAATTAA
1 TATTTAA-TAT
26433935 TATTTAATAT
1 TATTTAATAT
*
26433945 TATTTAATTAA
1 TATTTAA-TAT
*
26433956 TATTTAGTAT
1 TATTTAATAT
*
26433966 TATTAAAT-T
1 TATTTAATAT
26433975 TAATATTGAATAT
1 T-AT-TT-AATAT
* * *
26433988 GATTAAATTAA
1 TATTTAA-TAT
26433999 TATTTAATAAT
1 TATTTAAT-AT
* * *
26434010 GA-TCAATAG
1 TATTTAATAT
*
26434019 TATTTAATAG
1 TATTTAATAT
* *
26434029 TATTAAATAA
1 TATTTAATAT
*
26434039 TAGTTAATAT
1 TATTTAATAT
26434049 TATT
1 TATT
26434053 AAATTAATAT
Statistics
Matches: 93, Mismatches: 27, Indels: 18
0.67 0.20 0.13
Matches are distributed among these distances:
9 4 0.04
10 56 0.60
11 27 0.29
12 5 0.05
13 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.50
Consensus pattern (10 bp):
TATTTAATAT
Found at i:26433938 original size:21 final size:21
Alignment explanation
Indices: 26433912--26434397 Score: 182
Period size: 21 Copynumber: 22.8 Consensus size: 21
26433902 AATATTACCA
* *
26433912 AATATTTAATATTCTTTAATT
1 AATATTTAATATTATTAAATT
*
26433933 AATATTTAATATTATTTAATT
1 AATATTTAATATTATTAAATT
*
26433954 AATATTTAGTATTATTAAATTT
1 AATATTTAATATTATTAAA-TT
* *
26433976 AATATTGAATATGATTAAATT
1 AATATTTAATATTATTAAATT
* *
26433997 AATATTTAATAATGA-TCAA-T
1 AATATTTAAT-ATTATTAAATT
* *
26434017 AGTATTTAATAGTATTAAA-T
1 AATATTTAATATTATTAAATT
*
26434037 AATAGTTAATATTATTAAATT
1 AATATTTAATATTATTAAATT
* *
26434058 AATATTGAATATGA-TAAATT
1 AATATTTAATATTATTAAATT
*
26434078 AATATCGACTAATATTTAGTATAAA--
1 AATAT---TTAATA-TTA-T-TAAATT
* * *
26434103 AATA-TTATTCA-GATGAAATT
1 AATATTTAAT-ATTATTAAATT
* * * *
26434123 AAAATTTGAAGAATTAATAATTT
1 AATATTT-AA-TATTATTAAATT
* *
26434146 AATATTTAACATGA--AAA-T
1 AATATTTAATATTATTAAATT
* * *
26434164 AA-ATTTAAAATT-TTATATA
1 AATATTTAATATTATTAAATT
* *
26434183 AATATTTAATATTCAACTATTATT
1 AATATTTAATATT--ATTA-AATT
* *
26434207 AA-A-TTAATATTTAGAATAAAAT
1 AATATTTAATA-TT--ATTAAATT
* * *
26434229 ATTATTAAAATATTAAATATATTTTATT
1 AATATT-TAATATT--AT-TA---AATT
*
26434257 ACTATTTAATATTATTAAATT
1 AATATTTAATATTATTAAATT
* * *
26434278 GAATACTTAATATGAATAAATT
1 -AATATTTAATATTATTAAATT
* *
26434300 AATATTTAATATTGTTCAA-T
1 AATATTTAATATTATTAAATT
* *
26434320 AATATTTAAAATTACT-AA-T
1 AATATTTAATATTATTAAATT
* *
26434339 AATAGTTAATTTTATTAAATT
1 AATATTTAATATTATTAAATT
* *
26434360 AAAATTTAATAATATTAATTATT
1 AATATTTAATATTATTAA--ATT
*
26434383 AATATTTTAT-TTATT
1 AATATTTAATATTATT
26434398 TTATTAATTA
Statistics
Matches: 346, Mismatches: 80, Indels: 77
0.69 0.16 0.15
Matches are distributed among these distances:
17 8 0.02
18 8 0.02
19 22 0.06
20 70 0.20
21 103 0.30
22 57 0.16
23 35 0.10
24 14 0.04
25 12 0.03
27 10 0.03
28 7 0.02
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.46
Consensus pattern (21 bp):
AATATTTAATATTATTAAATT
Found at i:26434037 original size:20 final size:20
Alignment explanation
Indices: 26434022--26434061 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26434012 TCAATAGTAT
26434022 TTAATAGTATTAAATAATAG
1 TTAATAGTATTAAATAATAG
*
26434042 TTAATATTATTAAATTAATA
1 TTAATAGTATTAAA-TAATA
26434062 TTGAATATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
TTAATAGTATTAAATAATAG
Found at i:26434288 original size:22 final size:21
Alignment explanation
Indices: 26434262--26434312 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
26434252 TTATTACTAT
*
26434262 TTAATATTATTAAATTGAATAC
1 TTAATATTAATAAATT-AATAC
* *
26434284 TTAATATGAATAAATTAATAT
1 TTAATATTAATAAATTAATAC
26434305 TTAATATT
1 TTAATATT
26434313 GTTCAATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (21 bp):
TTAATATTAATAAATTAATAC
Found at i:26434381 original size:28 final size:31
Alignment explanation
Indices: 26434325--26434384 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
26434315 TCAATAATAT
26434325 TTAAAATTACTAATAATAGTTAATTTTATTAAA
1 TTAAAATTA-TAATAATAGTTAA-TTTATTAAA
26434358 TTAAAATT-TAATAATA-TTAA-TTATTAA
1 TTAAAATTATAATAATAGTTAATTTATTAA
26434385 TATTTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 7 0.26
30 4 0.15
31 8 0.30
33 8 0.30
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (31 bp):
TTAAAATTATAATAATAGTTAATTTATTAAA
Found at i:26434384 original size:16 final size:16
Alignment explanation
Indices: 26434329--26434386 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
26434319 TAATATTTAA
*
26434329 AATTACTAATAATAGTT
1 AATTATTAATAATA-TT
*
26434346 AATT-TTATTAA-ATT
1 AATTATTAATAATATT
*
26434360 AA-AATTTAATAATATT
1 AATTA-TTAATAATATT
26434376 AATTATTAATA
1 AATTATTAATA
26434387 TTTTATTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 9
0.70 0.11 0.20
Matches are distributed among these distances:
14 4 0.12
15 7 0.22
16 16 0.50
17 5 0.16
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (16 bp):
AATTATTAATAATATT
Found at i:26436068 original size:21 final size:21
Alignment explanation
Indices: 26436044--26436094 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
26436034 TTTAATGTAA
* *
26436044 TTTTGGTAACTTTTCATATAG
1 TTTTGGTAACTTATCATATAC
* * *
26436065 TTTTGATACCTTATGATATAC
1 TTTTGGTAACTTATCATATAC
26436086 TTTTGGTAA
1 TTTTGGTAA
26436095 TTAATGATAA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.10, G:0.14, T:0.51
Consensus pattern (21 bp):
TTTTGGTAACTTATCATATAC
Found at i:26436234 original size:13 final size:13
Alignment explanation
Indices: 26436218--26436247 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26436208 TTTAAATTTA
26436218 AAATTTTTTTACT
1 AAATTTTTTTACT
*
26436231 AAATTTTTTTATT
1 AAATTTTTTTACT
26436244 AAAT
1 AAAT
26436248 AGGTTCATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (13 bp):
AAATTTTTTTACT
Found at i:26437694 original size:26 final size:26
Alignment explanation
Indices: 26437637--26437706 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
26437627 TTAGTCCGGG
* * * *
26437637 CCCAATTGGACCTATTCTTGTCCAAG
1 CCCAATTAGACCCATTCTGGTCCAAA
*
26437663 CTCAATTAGACCCATTCTGGTCCAAA
1 CCCAATTAGACCCATTCTGGTCCAAA
*
26437689 CCCAATTAGGCCCATTCT
1 CCCAATTAGACCCATTCT
26437707 AGTTTGGGCT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.26, C:0.33, G:0.13, T:0.29
Consensus pattern (26 bp):
CCCAATTAGACCCATTCTGGTCCAAA
Found at i:26437814 original size:3 final size:3
Alignment explanation
Indices: 26437806--26437889 Score: 132
Period size: 3 Copynumber: 28.0 Consensus size: 3
26437796 TTTTATTACC
*
26437806 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
26437854 ATT GTT ATT ATT ATT ATT TTT ATT TTT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
26437890 TTTCTGTTTC
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (3 bp):
ATT
Done.