Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 129 of 130
Found at i:26449030 original size:50 final size:49
Alignment explanation
Indices: 26448929--26449033 Score: 156
Period size: 49 Copynumber: 2.1 Consensus size: 49
26448919 TTGATTCTTT
* * * *
26448929 AAAAAAAAAGGGTCAAATTGAAAACCCGAAATGGCGGTTTGACCCATAA
1 AAAAAAAAAAGGTCAAATTAAAAACCCGAAAGGGCGGTTTGAACCATAA
* *
26448978 AAAAAAAAAAGGTCAAATTAAAAACTCGAAAGGGTGGTTTGAACCATAA
1 AAAAAAAAAAGGTCAAATTAAAAACCCGAAAGGGCGGTTTGAACCATAA
26449027 AAAAAAA
1 AAAAAAA
26449034 GAAAAAAGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.16
Consensus pattern (49 bp):
AAAAAAAAAAGGTCAAATTAAAAACCCGAAAGGGCGGTTTGAACCATAA
Found at i:26450047 original size:89 final size:89
Alignment explanation
Indices: 26449895--26450887 Score: 1021
Period size: 89 Copynumber: 11.2 Consensus size: 89
26449885 ATCATTCTTT
* * * * * *
26449895 ATGATTCGTGGTTTCATCCCGATTATTTATTTTTGACCTCGACTC-AGTCTTGGTCATTCTATTT
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGA-TCTTGATCGTTTTATTT
* * * *
26449959 TGACTCGTGGTTTCGTTTTGGTCAC
65 TGACTCGTGATTTTGTCTCGGTCAC
* * ** *
26449984 ATGATTCATGGTTTTATCTTGATCATTTATTTTTGACCTTAACTCGATCTTGATCGTTTTATTTC
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGATCTTGATCGTTTTATTTT
* * *
26450049 GACTCGTGATTTTATTTCGGTCAT
66 GACTCGTGATTTTGTCTCGGTCAC
* * * * * * * * *
26450073 ATGATTCGTGGTTTCATCCCGATCATTCATTTTTAACTTTGACTCGATCCTGGTCATTTTATTTT
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGATCTTGATCGTTTTATTTT
* * *
26450138 AACTCGTGATTTCGTCACGGTCAC
66 GACTCGTGATTTTGTCTCGGTCAC
* *
26450162 ATGATTCATGGTTTCATCTCGATCATTTATTTTAGACATCGACTCGATCTTGATCGTTTTATTTC
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGATCTTGATCGTTTTATTT-
* * * *
26450227 T-ACACGTGGTTTCGTCTCGATCAC
65 TGACTCGTGATTTTGTCTCGGTCAC
* * ** *
26450251 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCAATCTTGGTCACTTTATTTC
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGATCTTGATCGTTTTATTTT
* * ** *
26450316 GAAAT-GTGGTTTCATCCCGGTCAC
66 G-ACTCGTGATTTTGTCTCGGTCAC
* * * * *
26450340 ATGATTCATGGTTTCATCTAGTTAATTTATTTTTGACCTCGACTCGATCTTTG-TTGCTTTATTT
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGATC-TTGATCGTTTTATTT
* * * *
26450404 CGACTCATGATTTTGTCCCAGTCAC
65 TGACTCGTGATTTTGTCTCGGTCAC
* * *
26450429 ATGATTCATGGTTTCATTTTGATCATTTATTTTTGACCTCGACTCGATCTTGGT-GATTTTATTT
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGATCTTGATCG-TTTTATTT
*
26450493 TGACTCATGATTTTGTCTCGGTCAC
65 TGACTCGTGATTTTGTCTCGGTCAC
* * * * * * * **
26450518 ATGATTCGTGGTTTCATATCAATAATTCATTTTTGATCTCGACTC-AGTCCTGATCACTTTATTT
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGA-TCTTGATCGTTTTATTT
* * *
26450582 TGACTCGTGGTTTTGTTTCAGTCAC
65 TGACTCGTGATTTTGTCTCGGTCAC
* * * *
26450607 ATGATTCATGGTTTTATCTCGATCATTTATTTTTGATCTCGACTCGATCTTGGTCGCTTTATTTT
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGATCTTGATCGTTTTATTTT
* * *
26450672 GACTCGTGATTTTATCCCGATCAC
66 GACTCGTGATTTTGTCTCGGTCAC
* * * * * * * *
26450696 ATGATTCGTGATTTTATCCCTATCATTCATTTTTGATCTCGACTCGATCTTGATCATTTTATTTT
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGATCTTGATCGTTTTATTTT
* * *
26450761 GACTCATGATTTTATCCCGGTCAC
66 GACTCGTGATTTTGTCTCGGTCAC
* *
26450785 ATGATTCATGGTTTCATCCCGATCATTTATTTTTGACCTCGACTC-AGTCTTGATCGCTTTATTT
1 ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGA-TCTTGATCGTTTTATTT
* *
26450849 TGACTCGTGATTTT-TTTCGATCAC
65 TGACTCGTGATTTTGTCTCGGTCAC
*
26450873 ATGATTCGTGGTTTC
1 ATGATTCATGGTTTC
26450888 GTCCTAATCA
Statistics
Matches: 759, Mismatches: 133, Indels: 25
0.83 0.15 0.03
Matches are distributed among these distances:
88 29 0.04
89 723 0.95
90 7 0.01
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.46
Consensus pattern (89 bp):
ATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCGACTCGATCTTGATCGTTTTATTTT
GACTCGTGATTTTGTCTCGGTCAC
Found at i:26450386 original size:267 final size:267
Alignment explanation
Indices: 26449895--26450943 Score: 1158
Period size: 267 Copynumber: 3.9 Consensus size: 267
26449885 ATCATTCTTT
* * * *
26449895 ATGATTCGTGGTTTCATCCCGATTATTTATTTTTGACCTCGACTC-AGTCTTGGTCATTCTATTT
1 ATGATTCATGGTTTCATCCCGATCATTTATTTTTGACCTCGACTCGA-TCTTGATCATTTTATTT
* * * * * * *
26449959 TGACTCGTGGTTTCGTTTTGGTCACATGATTCATGGTTTTATCTTGATCATTTATTTTTGACCTT
65 TGACTCATGATTTCGTCTCGGTCACATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTC
* * ** * * *
26450024 AACTCGATCTTGATCGTTTTATTTCGACTCGTGATTTTATTTCGGTCATATGATTCGTGGTTTCA
130 GACTCAATCTTGATCACTTTATTTCGACTCGTGGTTTTATTTCGGTCACATGATTCATGGTTTCA
* * * * * * ** * *
26450089 TCCCGATCATTCATTTTTAACTTTGACTCGATCCTGGTCATTTTATTTTAACTCGTGATTTCGTC
195 TCTCGATCATTTATTTTTGACCTCGACTCGATCTTGGTCGCTTTATTTTGACTCGTGATTTTGTC
*
26450154 ACGGTCAC
260 CCGGTCAC
* * * *
26450162 ATGATTCATGGTTTCATCTCGATCATTTATTTTAGACATCGACTCGATCTTGATCGTTTTATTTC
1 ATGATTCATGGTTTCATCCCGATCATTTATTTTTGACCTCGACTCGATCTTGATCATTTTATTT-
* * * *
26450227 T-ACACGTGGTTTCGTCTCGATCACATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTC
65 TGACTCATGATTTCGTCTCGGTCACATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTC
* * * **
26450291 GACTCAATCTTGGTCACTTTATTTCGAAAT-GTGGTTTCATCCCGGTCACATGATTCATGGTTTC
130 GACTCAATCTTGATCACTTTATTTCG-ACTCGTGGTTTTATTTCGGTCACATGATTCATGGTTTC
* * * * * * *
26450355 ATCTAGTTAATTTATTTTTGACCTCGACTCGATCTTTGTTGCTTTATTTCGACTCATGATTTTGT
194 ATCTCGATCATTTATTTTTGACCTCGACTCGATCTTGGTCGCTTTATTTTGACTCGTGATTTTGT
*
26450420 CCCAGTCAC
259 CCCGGTCAC
*** * *
26450429 ATGATTCATGGTTTCATTTTGATCATTTATTTTTGACCTCGACTCGATCTTGGTGATTTTATTTT
1 ATGATTCATGGTTTCATCCCGATCATTTATTTTTGACCTCGACTCGATCTTGATCATTTTATTTT
* * * * * * *
26450494 GACTCATGATTTTGTCTCGGTCACATGATTCGTGGTTTCATATCAATAATTCATTTTTGATCTCG
66 GACTCATGATTTCGTCTCGGTCACATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCG
* * * * * *
26450559 ACTCAGTCCTGATCACTTTATTTTGACTCGTGGTTTTGTTTCAGTCACATGATTCATGGTTTTAT
131 ACTCAATCTTGATCACTTTATTTCGACTCGTGGTTTTATTTCGGTCACATGATTCATGGTTTCAT
* *
26450624 CTCGATCATTTATTTTTGATCTCGACTCGATCTTGGTCGCTTTATTTTGACTCGTGATTTTATCC
196 CTCGATCATTTATTTTTGACCTCGACTCGATCTTGGTCGCTTTATTTTGACTCGTGATTTTGTCC
*
26450689 CGATCAC
261 CGGTCAC
* * * * * *
26450696 ATGATTCGTGATTTTATCCCTATCATTCATTTTTGATCTCGACTCGATCTTGATCATTTTATTTT
1 ATGATTCATGGTTTCATCCCGATCATTTATTTTTGACCTCGACTCGATCTTGATCATTTTATTTT
** * *
26450761 GACTCATGATTTTATCCCGGTCACATGATTCATGGTTTCATCCCGATCATTTATTTTTGACCTCG
66 GACTCATGATTTCGTCTCGGTCACATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCG
* * * * * * *
26450826 ACTCAGTCTTGATCGCTTTATTTTGACTCGTGATTTT-TTTCGATCACATGATTCGTGGTTTCGT
131 ACTCAATCTTGATCACTTTATTTCGACTCGTGGTTTTATTTCGGTCACATGATTCATGGTTTCAT
* * * * * * *
26450890 C-CTAATCA-TCATTTTTGACTTCGACTTGATTTTGGTTGCTTCA-TTTGACTCGTG
196 CTC-GATCATTTATTTTTGACCTCGACTCGATCTTGGTCGCTTTATTTTGACTCGTG
26450944 GTTTAATCTC
Statistics
Matches: 654, Mismatches: 122, Indels: 15
0.83 0.15 0.02
Matches are distributed among these distances:
264 11 0.02
265 29 0.04
266 30 0.05
267 580 0.89
268 4 0.01
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.46
Consensus pattern (267 bp):
ATGATTCATGGTTTCATCCCGATCATTTATTTTTGACCTCGACTCGATCTTGATCATTTTATTTT
GACTCATGATTTCGTCTCGGTCACATGATTCATGGTTTCATCTCGATCATTTATTTTTGACCTCG
ACTCAATCTTGATCACTTTATTTCGACTCGTGGTTTTATTTCGGTCACATGATTCATGGTTTCAT
CTCGATCATTTATTTTTGACCTCGACTCGATCTTGGTCGCTTTATTTTGACTCGTGATTTTGTCC
CGGTCAC
Found at i:26451231 original size:3 final size:3
Alignment explanation
Indices: 26451223--26451288 Score: 105
Period size: 3 Copynumber: 22.0 Consensus size: 3
26451213 TTATATTACC
26451223 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
26451271 GTT ATT GTT ATT TTT ATT
1 ATT ATT ATT ATT ATT ATT
26451289 TTTTTGTTGC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:26452160 original size:15 final size:16
Alignment explanation
Indices: 26452121--26452153 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26452111 TCGGCCACAG
26452121 TTTT-TTTTTTTTTCA
1 TTTTCTTTTTTTTTCA
26452136 TTTTCTTTTTTTTT-A
1 TTTTCTTTTTTTTTCA
26452151 TTT
1 TTT
26452154 CTATTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.06, C:0.06, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTCTTTTTTTTTCA
Found at i:26452299 original size:19 final size:19
Alignment explanation
Indices: 26452269--26452325 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 19
26452259 ACTTCTTAAC
*
26452269 AAAAATAAAAAATAAAAAA
1 AAAAAAAAAAAATAAAAAA
*
26452288 AACAAAAAAAAAGATAAATAA
1 AA-AAAAAAAAA-ATAAAAAA
*
26452309 AAAAAAAAAATATAAAA
1 AAAAAAAAAAAATAAAA
26452326 TTTACTATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 7 0.22
20 16 0.50
21 9 0.28
ACGTcount: A:0.86, C:0.02, G:0.02, T:0.11
Consensus pattern (19 bp):
AAAAAAAAAAAATAAAAAA
Found at i:26452299 original size:21 final size:21
Alignment explanation
Indices: 26452266--26452318 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
26452256 ACGACTTCTT
26452266 AACAAAAATAAAAAATAAAAAA
1 AACAAAAA-AAAAAATAAAAAA
* *
26452288 AACAAAAAAAAAGATAAATAA
1 AACAAAAAAAAAAATAAAAAA
26452309 AA-AAAAAAAA
1 AACAAAAAAAA
26452319 TATAAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 8 0.28
21 13 0.45
22 8 0.28
ACGTcount: A:0.87, C:0.04, G:0.02, T:0.08
Consensus pattern (21 bp):
AACAAAAAAAAAAATAAAAAA
Found at i:26454297 original size:98 final size:98
Alignment explanation
Indices: 26454189--26454381 Score: 262
Period size: 98 Copynumber: 2.0 Consensus size: 98
26454179 AAATTTTACT
* * **
26454189 TTTAAGAAAATTCATTAAAT-CTTCCAACAGGTTGATAAGATTTAATTCAAGATTTTGATCTTCC
1 TTTAAAAAAATTCATTAAATCCTT-CAACAGGTTGATAAGACTTAATTCAAGATTTAAATCTTCC
26454253 AATAGTTTGGTAAAATTAAAAATGTATTATTTTA
65 AATAGTTTGGTAAAATTAAAAATGTATTATTTTA
* * * * *
26454287 TTTAAAAAAATTTATTAAGTCCTTTAATAGTTTGATAAGACTTAATTCAAGATTTAAATCTTCCA
1 TTTAAAAAAATTCATTAAATCCTTCAACAGGTTGATAAGACTTAATTCAAGATTTAAATCTTCCA
** *
26454352 ATAGTTTGGTAGGATTAAAAATTTATTATT
66 ATAGTTTGGTAAAATTAAAAATGTATTATT
26454382 AAAAAAATTA
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
98 79 0.96
99 3 0.04
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (98 bp):
TTTAAAAAAATTCATTAAATCCTTCAACAGGTTGATAAGACTTAATTCAAGATTTAAATCTTCCA
ATAGTTTGGTAAAATTAAAAATGTATTATTTTA
Found at i:26454431 original size:98 final size:96
Alignment explanation
Indices: 26454189--26454431 Score: 217
Period size: 98 Copynumber: 2.5 Consensus size: 96
26454179 AAATTTTACT
* * * * * ** **
26454189 TTTAAGAAAATTCATTAAAT-CTTCCAACAGGTTGATAAGATTTAATTCAAGATTTTGATCTTCC
1 TTTAAAAAAATTTATTAAATCCTT-CAATAGTTTGATAAAACATAATTCAAGATTTAAATCTTCC
26454253 AATAGTTTGGTAAAATTAAAAATGTATTATTTTA
65 AATAGTTTGGTAAAATTAAAAA-GTATTA-TTTA
* * * *
26454287 TTTAAAAAAATTTATTAAGTCCTTTAATAGTTTGATAAGACTTAATTCAAGATTTAAATCTTCCA
1 TTTAAAAAAATTTATTAAATCCTTCAATAGTTTGATAAAACATAATTCAAGATTTAAATCTTCCA
**
26454352 ATAGTTTGGTAGGATTAAAAA-T-TTA-TTA
66 ATAGTTTGGTAAAATTAAAAAGTATTATTTA
* *
26454380 -TTAAAAAAATTATATTATGAAATTCTTCAATAGTTTGGTAAAATTCATAATT
1 TTTAAAAAAATT-TA-T-T-AAATCCTTCAATAGTTTGATAAAA--CATAATT
26454432 TAAAATTTCT
Statistics
Matches: 121, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
92 11 0.09
93 5 0.04
94 1 0.01
95 4 0.03
96 20 0.17
98 77 0.64
99 3 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (96 bp):
TTTAAAAAAATTTATTAAATCCTTCAATAGTTTGATAAAACATAATTCAAGATTTAAATCTTCCA
ATAGTTTGGTAAAATTAAAAAGTATTATTTA
Found at i:26455700 original size:84 final size:84
Alignment explanation
Indices: 26455553--26455902 Score: 321
Period size: 84 Copynumber: 4.2 Consensus size: 84
26455543 ATCTAGAAGT
* * ** * * **
26455553 CTTAGAGATTATGCTCTGAAATCTTACAAATCTCGA-CTCTAAAACTA-ATTCAGTTCGGAAGAC
1 CTTAAAGATTATGCTCAGAGGTCTTATAAATCTCGATCT-TAAAA-TAGATTCAGCTCAAAAGAC
**
26455616 TTATGAATCTTACTTGAAGGA
64 TTATGAATCTTACCCGAAGGA
** * * *
26455637 CTTAAAGATTATGCTCAGAGGTCTTATAAATCTTAATCTTAAAATAGATTTAGCTCGAGAGACTT
1 CTTAAAGATTATGCTCAGAGGTCTTATAAATCTCGATCTTAAAATAGATTCAGCTCAAAAGACTT
* * * *
26455702 AAGAATCTTATCCAAAGAA
66 ATGAATCTTACCCGAAGGA
* * * * *
26455721 CTTAAAAATTATGCT-AGGAGGTCTTACAAATCTCGATCTTAAAATAGATTCAGCTTAAAAAATT
1 CTTAAAGATTATGCTCA-GAGGTCTTATAAATCTCGATCTTAAAATAGATTCAGCTCAAAAGACT
** * * *
26455785 TACAAATATTGCCTGAAGGA
65 TATGAATCTTACCCGAAGGA
* * *
26455805 TTTAGAGATTATGCTCAGAGGTCTTGTAAATCTCGA-CTTTAAAATAGATTCAGCTCAAAAGACT
1 CTTAAAGATTATGCTCAGAGGTCTTATAAATCTCGATC-TTAAAATAGATTCAGCTCAAAAGACT
* *
26455869 TATGAATCTTGCCCGAATGA
65 TATGAATCTTACCCGAAGGA
*
26455889 CTTAGAGATTATGC
1 CTTAAAGATTATGC
26455903 CTAAAGGTTT
Statistics
Matches: 212, Mismatches: 49, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
83 4 0.02
84 205 0.97
85 3 0.01
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (84 bp):
CTTAAAGATTATGCTCAGAGGTCTTATAAATCTCGATCTTAAAATAGATTCAGCTCAAAAGACTT
ATGAATCTTACCCGAAGGA
Found at i:26456182 original size:17 final size:17
Alignment explanation
Indices: 26456160--26456264 Score: 88
Period size: 17 Copynumber: 6.2 Consensus size: 17
26456150 AACTTCAAAG
*
26456160 ATTTGCTAGATTTTCAA
1 ATTTGCAAGATTTTCAA
* **
26456177 ATTTGCAAGA-ATGGAA
1 ATTTGCAAGATTTTCAA
*
26456193 GATTTGCAAGATTTTTAA
1 -ATTTGCAAGATTTTCAA
**
26456211 ATTTGCAAGAACTTC-A
1 ATTTGCAAGATTTTCAA
* **
26456227 ATTTCACAAGGGTTTCAA
1 ATTT-GCAAGATTTTCAA
26456245 ATTTGCAAGATTTTCAA
1 ATTTGCAAGATTTTCAA
26456262 ATT
1 ATT
26456265 CGAAAGAATT
Statistics
Matches: 67, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
16 8 0.12
17 51 0.76
18 8 0.12
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.38
Consensus pattern (17 bp):
ATTTGCAAGATTTTCAA
Found at i:26456205 original size:9 final size:9
Alignment explanation
Indices: 26456157--26456220 Score: 53
Period size: 9 Copynumber: 7.4 Consensus size: 9
26456147 CAAAACTTCA
26456157 AAGATTTGC
1 AAGATTTGC
* *
26456166 TAGATTTTC
1 AAGATTTGC
26456175 AA-ATTTGC
1 AAGATTTGC
* *
26456183 AAGA-ATGG
1 AAGATTTGC
26456191 AAGATTTGC
1 AAGATTTGC
**
26456200 AAGATTTTT
1 AAGATTTGC
26456209 AA-ATTTGC
1 AAGATTTGC
26456217 AAGA
1 AAGA
26456221 ACTTCAATTT
Statistics
Matches: 40, Mismatches: 12, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
8 19 0.47
9 21 0.52
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.36
Consensus pattern (9 bp):
AAGATTTGC
Found at i:26456205 original size:34 final size:34
Alignment explanation
Indices: 26456157--26456221 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
26456147 CAAAACTTCA
*
26456157 AAGATTTGCTAGATTTTCAAATTTGCAAGAATGG
1 AAGATTTGCAAGATTTTCAAATTTGCAAGAATGG
*
26456191 AAGATTTGCAAGATTTTTAAATTTGCAAGAA
1 AAGATTTGCAAGATTTTCAAATTTGCAAGAA
26456222 CTTCAATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.35
Consensus pattern (34 bp):
AAGATTTGCAAGATTTTCAAATTTGCAAGAATGG
Found at i:26456636 original size:81 final size:81
Alignment explanation
Indices: 26456491--26456644 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 81
26456481 TTCTTATTGG
* * * *
26456491 AAAATTTTAGAGATTCACACTTAAAAGTTAAATATTTTCATTTAAAAAATTTAAAGATTCACATC
1 AAAAATTTAGAGATACACACTTAAAAGTTAAAGATTTTCATTTAAAAAACTTAAAGATTCACATC
26456556 TAA-AATTTATATTTGA
66 -AATAATTTATATTTGA
* ** *
26456572 AAAAATTTAGAGATACACA-TTCAAAAGTTAAAGATTTTTATTCT-AAAAACTTAGTGATTTACA
1 AAAAATTTAGAGATACACACTT-AAAAGTTAAAGATTTTCATT-TAAAAAACTTAAAGATTCACA
26456635 TCAATAATTT
64 TCAATAATTT
26456645 CAAAAATTCA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
80 4 0.06
81 57 0.92
82 1 0.02
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.38
Consensus pattern (81 bp):
AAAAATTTAGAGATACACACTTAAAAGTTAAAGATTTTCATTTAAAAAACTTAAAGATTCACATC
AATAATTTATATTTGA
Found at i:26456755 original size:22 final size:22
Alignment explanation
Indices: 26456721--26456912 Score: 93
Period size: 22 Copynumber: 8.5 Consensus size: 22
26456711 ATTTTAGGGT
**
26456721 TTCACATCCAAAATTTCAAAGA
1 TTCACATTTAAAATTTCAAAGA
**
26456743 TTCACATTTAAAAAATTTTTAAGAA
1 TTCACATTT--AAAATTTCAAAG-A
* *
26456768 TTC-CTATTTAAAATTTTAAAAA
1 TTCAC-ATTTAAAATTTCAAAGA
* * * *
26456790 TTAACCTTTGAAATTTTTTAAAGA
1 TTCACATTT-AAA-ATTTCAAAGA
** *
26456814 TTCACATCCAAAATTTCAAAAA
1 TTCACATTTAAAATTTCAAAGA
* *
26456836 CTCACATTTGAAAAATT-AAAGA
1 TTCACATTT-AAAATTTCAAAGA
** * *
26456858 TTCACATTCCAAGTTTCAAAGG
1 TTCACATTTAAAATTTCAAAGA
* *
26456880 TTCACATTTGAAAAATT-AGAGA
1 TTCACATTT-AAAATTTCAAAGA
*
26456902 TTCATATTTAA
1 TTCACATTTAA
26456913 TGTTTCGAAG
Statistics
Matches: 125, Mismatches: 35, Indels: 21
0.69 0.19 0.12
Matches are distributed among these distances:
21 6 0.05
22 60 0.48
23 27 0.22
24 24 0.19
25 8 0.06
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (22 bp):
TTCACATTTAAAATTTCAAAGA
Found at i:26456763 original size:47 final size:47
Alignment explanation
Indices: 26456705--26456896 Score: 146
Period size: 46 Copynumber: 4.2 Consensus size: 47
26456695 ATTTCTTATC
* * *
26456705 TAAAAAA-TTTTAGGGTTTCACATCCAAAATTTCAAAGATTCACATT
1 TAAAAAATTTTTAAGGATTCACATCCAAAATTTCAAAAATTCACATT
* ** * * *
26456751 TAAAAAATTTTTAAGAATTC-CTATTTAAAATTTTAAAAATTAACCTT
1 TAAAAAATTTTTAAGGATTCAC-ATCCAAAATTTCAAAAATTCACATT
* * * *
26456798 T-GAAATTTTTTAAAGATTCACATCCAAAATTTCAAAAACTCACATT
1 TAAAAAATTTTTAAGGATTCACATCCAAAATTTCAAAAATTCACATT
* * * **
26456844 TGAAAAA---TTAAAGATTCACATTCC-AAGTTTCAAAGGTTCACATT
1 TAAAAAATTTTTAAGGATTCACA-TCCAAAATTTCAAAAATTCACATT
*
26456888 TGAAAAATT
1 TAAAAAATT
26456897 AGAGATTCAT
Statistics
Matches: 114, Mismatches: 25, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
44 36 0.32
45 3 0.03
46 42 0.37
47 33 0.29
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.36
Consensus pattern (47 bp):
TAAAAAATTTTTAAGGATTCACATCCAAAATTTCAAAAATTCACATT
Found at i:26456766 original size:24 final size:25
Alignment explanation
Indices: 26456730--26456780 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
26456720 TTTCACATCC
26456730 AAAATTTCAAAG-ATTCAC-ATTTAA
1 AAAATTTCAAAGAATTC-CTATTTAA
**
26456754 AAAATTTTTAAGAATTCCTATTTAA
1 AAAATTTCAAAGAATTCCTATTTAA
26456779 AA
1 AA
26456781 TTTTAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (25 bp):
AAAATTTCAAAGAATTCCTATTTAA
Found at i:26456875 original size:44 final size:44
Alignment explanation
Indices: 26456721--26456905 Score: 140
Period size: 44 Copynumber: 4.1 Consensus size: 44
26456711 ATTTTAGGGT
* * * *
26456721 TTCACATCCAAAATTTCAAAGATTCACATTTAAAAAATTTTTAAGAA
1 TTCACATCCAAAATTTCAAAAACTCACATTTGAAAAA--TTAAAG-A
** * * * * **
26456768 TTC-CTATTTAAAATTTTAAAAATTAACCTTTGAAATTTTTTAAAGA
1 TTCAC-ATCCAAAATTTCAAAAACTCACATTTGAAA--AATTAAAGA
26456814 TTCACATCCAAAATTTCAAAAACTCACATTTGAAAAATTAAAGA
1 TTCACATCCAAAATTTCAAAAACTCACATTTGAAAAATTAAAGA
* *** *
26456858 TTCACATTCC-AAGTTTCAAAGGTTCACATTTGAAAAATTAGAGA
1 TTCACA-TCCAAAATTTCAAAAACTCACATTTGAAAAATTAAAGA
26456902 TTCA
1 TTCA
26456906 TATTTAATGT
Statistics
Matches: 110, Mismatches: 23, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
44 46 0.42
45 3 0.03
46 29 0.26
47 32 0.29
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (44 bp):
TTCACATCCAAAATTTCAAAAACTCACATTTGAAAAATTAAAGA
Found at i:26460482 original size:22 final size:22
Alignment explanation
Indices: 26460434--26460488 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
26460424 AAAATTACTG
* * *
26460434 ATGATTTATTATAAAGTTATTA
1 ATGATTTACTACAAAGTTATCA
*
26460456 TTGATTTACTACAAAGTTATCA
1 ATGATTTACTACAAAGTTATCA
*
26460478 ATGATTAACTA
1 ATGATTTACTA
26460489 ATTTACTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (22 bp):
ATGATTTACTACAAAGTTATCA
Found at i:26460533 original size:52 final size:52
Alignment explanation
Indices: 26460437--26460535 Score: 128
Period size: 52 Copynumber: 1.9 Consensus size: 52
26460427 ATTACTGATG
* * *
26460437 ATTTATTATAAAGTTATTATTGATTTACTACAAAGTTATCAATGATTAACTA
1 ATTTACTATAAAGTTATCATTGATTTACTACAAAATTATCAATGATTAACTA
* * *
26460489 ATTTACTATTAAGTTATCATTGATTTA-TAATAAAATTATTAATGATT
1 ATTTACTATAAAGTTATCATTGATTTACT-ACAAAATTATCAATGATT
26460536 TATTACTATG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
51 1 0.03
52 39 0.98
ACGTcount: A:0.40, C:0.06, G:0.07, T:0.46
Consensus pattern (52 bp):
ATTTACTATAAAGTTATCATTGATTTACTACAAAATTATCAATGATTAACTA
Found at i:26460550 original size:22 final size:22
Alignment explanation
Indices: 26460525--26460583 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
26460515 ATAATAAAAT
26460525 TATTAATGATTTATTACT-ATGC
1 TATTAATGATTTATTACTAAT-C
* *
26460547 TATTAGTGATTTACTACTAATC
1 TATTAATGATTTATTACTAATC
*
26460569 -ATGAATGATTTATTA
1 TATTAATGATTTATTA
26460584 TTACATTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 12 0.39
22 17 0.55
23 2 0.06
ACGTcount: A:0.34, C:0.08, G:0.10, T:0.47
Consensus pattern (22 bp):
TATTAATGATTTATTACTAATC
Found at i:26460680 original size:22 final size:22
Alignment explanation
Indices: 26460662--26460703 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26460652 AAATTATTAT
*
26460662 AGATTTATTACTAAATTATCCA
1 AGATTCATTACTAAATTATCCA
*
26460684 AGATTCATTACTAATTTATC
1 AGATTCATTACTAAATTATC
26460704 ACTTATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (22 bp):
AGATTCATTACTAAATTATCCA
Found at i:26460834 original size:22 final size:22
Alignment explanation
Indices: 26460793--26460841 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
26460783 AGTGATTAAT
*
26460793 TACTAAATTATCATTAATTTTC
1 TACTAAATTATCATTAATTTGC
*
26460815 TACTAAATTAT-ATGTGATTTGC
1 TACTAAATTATCAT-TAATTTGC
26460837 TACTA
1 TACTA
26460842 GGTATAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (22 bp):
TACTAAATTATCATTAATTTGC
Found at i:26460897 original size:22 final size:22
Alignment explanation
Indices: 26460856--26460958 Score: 66
Period size: 22 Copynumber: 4.7 Consensus size: 22
26460846 TAACAATTAA
*
26460856 TTACTATTAAATTGA-AACTAGT
1 TTACTATTAAATT-ATCACTAGT
*
26460878 TTACTATTAAATTATCACTAAT
1 TTACTATTAAATTATCACTAGT
* * * *
26460900 TTATTATTAAGTTATTA-TTGAT
1 TTACTATTAAATTATCACTAG-T
* * *
26460922 TTATTACTAAATTATCAATAGT
1 TTACTATTAAATTATCACTAGT
* * *
26460944 TAACTACTAAGTTAT
1 TTACTATTAAATTAT
26460959 TACTTATTTT
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
21 2 0.03
22 60 0.94
23 2 0.03
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.47
Consensus pattern (22 bp):
TTACTATTAAATTATCACTAGT
Found at i:26461275 original size:22 final size:22
Alignment explanation
Indices: 26461243--26461354 Score: 116
Period size: 22 Copynumber: 5.1 Consensus size: 22
26461233 TATAAAAAAG
*
26461243 TTATCAATGATTAACAATTAAA
1 TTATCAATGATTTACAATTAAA
* * *
26461265 TTATCATTGATTTACTACTAAA
1 TTATCAATGATTTACAATTAAA
* * *
26461287 TTATTAATAATTTACCATTAAA
1 TTATCAATGATTTACAATTAAA
* *
26461309 TTATGAATGATTTACAATTAAG
1 TTATCAATGATTTACAATTAAA
* **
26461331 TTATGAATGATTTACTGTTAAA
1 TTATCAATGATTTACAATTAAA
26461353 TT
1 TT
26461355 GTTGGTAATT
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 74 1.00
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (22 bp):
TTATCAATGATTTACAATTAAA
Found at i:26461482 original size:22 final size:22
Alignment explanation
Indices: 26461455--26461549 Score: 64
Period size: 22 Copynumber: 4.3 Consensus size: 22
26461445 AATGATTAAC
*
26461455 TAATTTACTATTAAATTATCAA
1 TAATTTACTAATAAATTATCAA
* * * * *
26461477 TGATTTGCAAATCAATTATTAA
1 TAATTTACTAATAAATTATCAA
* * * *
26461499 TAATTTATTAATACATTATTAG
1 TAATTTACTAATAAATTATCAA
* * * *
26461521 TGATTTAGTATTAAGTTATCAA
1 TAATTTACTAATAAATTATCAA
26461543 TAATTTA
1 TAATTTA
26461550 TTACAACATT
Statistics
Matches: 52, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.46
Consensus pattern (22 bp):
TAATTTACTAATAAATTATCAA
Found at i:26461508 original size:11 final size:11
Alignment explanation
Indices: 26461492--26461552 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
26461482 TGCAAATCAA
26461492 TTATTAATAAT
1 TTATTAATAAT
26461503 TTATTAATACA-
1 TTATTAATA-AT
* *
26461514 TTATTAGTGAT
1 TTATTAATAAT
* * *
26461525 TTAGTATTAAG
1 TTATTAATAAT
*
26461536 TTATCAATAAT
1 TTATTAATAAT
26461547 TTATTA
1 TTATTA
26461553 CAACATTATA
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
10 1 0.03
11 35 0.95
12 1 0.03
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (11 bp):
TTATTAATAAT
Found at i:26461545 original size:44 final size:43
Alignment explanation
Indices: 26461492--26461576 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 43
26461482 TGCAAATCAA
* *
26461492 TTATTAATAATTTATTA-ATACATTATTAGTGATTTAGTATTAAG
1 TTATCAATAATTTATTACA-ACATTA-TAGTAATTTAGTATTAAG
*
26461536 TTATCAATAATTTATTACAACATTATAGTAATTTATTATTA
1 TTATCAATAATTTATTACAACATTATAGTAATTTAGTATTA
26461577 TACTATTATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 14 0.38
44 22 0.59
45 1 0.03
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (43 bp):
TTATCAATAATTTATTACAACATTATAGTAATTTAGTATTAAG
Found at i:26461678 original size:43 final size:43
Alignment explanation
Indices: 26461631--26461786 Score: 111
Period size: 43 Copynumber: 3.6 Consensus size: 43
26461621 AATTTCAATT
*
26461631 ATTTATTA-AAAATTATTA-TCAATTTATCATTAAATTATCCATG
1 ATTTACTACAAAATTATTACT-AATTTAT-ATTAAATTATCCATG
* * * **
26461674 ATTTACTACCAAGTTATTACTTATTTATATTAAATTATTTATG
1 ATTTACTACAAAATTATTACTAATTTATATTAAATTATCCATG
** * * * * * *
26461717 ATTTACTATTAAGTTATCATTAATTAATTACTAAATTATCGATG
1 ATTTACTACAAAATTATTACTAATTTA-TATTAAATTATCCATG
* * *
26461761 ATTTACTACTAAGTTA-TACTGATTTA
1 ATTTACTACAAAATTATTACTAATTTA
26461787 CTTTAAAGTT
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
43 47 0.52
44 42 0.47
45 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (43 bp):
ATTTACTACAAAATTATTACTAATTTATATTAAATTATCCATG
Found at i:26461692 original size:44 final size:43
Alignment explanation
Indices: 26461643--26461777 Score: 146
Period size: 44 Copynumber: 3.1 Consensus size: 43
26461633 TTATTAAAAA
*
26461643 TTATTATCAATTTATCATTAAATTATCCATGATTTACTACCAAG
1 TTATTATCAATTTAT-ATTAAATTATCCATGATTTACTACTAAG
* ** *
26461687 TTATTA-CTTATTTATATTAAATTATTTATGATTTACTATTAAG
1 TTATTATC-AATTTATATTAAATTATCCATGATTTACTACTAAG
* * * * *
26461730 TTATCATTAATTAATTACTAAATTATCGATGATTTACTACTAAG
1 TTATTATCAATTTA-TATTAAATTATCCATGATTTACTACTAAG
26461774 TTAT
1 TTAT
26461778 ACTGATTTAC
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
43 34 0.45
44 41 0.55
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.48
Consensus pattern (43 bp):
TTATTATCAATTTATATTAAATTATCCATGATTTACTACTAAG
Found at i:26461770 original size:22 final size:22
Alignment explanation
Indices: 26461661--26461842 Score: 83
Period size: 22 Copynumber: 8.4 Consensus size: 22
26461651 AATTTATCAT
*
26461661 TAAATTATCCATGATTTACTAC
1 TAAATTATCTATGATTTACTAC
* * * *
26461683 CAAGTTAT-TACTTATTTA-TAT
1 TAAATTATCTA-TGATTTACTAC
* *
26461704 TAAATTATTTATGATTTACTAT
1 TAAATTATCTATGATTTACTAC
* * * *
26461726 TAAGTTATC-ATTAATTAATTAC
1 TAAATTATCTA-TGATTTACTAC
*
26461748 TAAATTATCGATGATTTACTAC
1 TAAATTATCTATGATTTACTAC
* *
26461770 TAAGTTA--TACTGATTTACT-T
1 TAAATTATCTA-TGATTTACTAC
* * * *
26461790 TAAAGTTTTCAATAATTAACTAC
1 TAAA-TTATCTATGATTTACTAC
*
26461813 TAAACTAT-TATTGATTTACCT-C
1 TAAATTATCTA-TGATTTA-CTAC
26461835 TAAATTAT
1 TAAATTAT
26461843 TTACTATTAA
Statistics
Matches: 115, Mismatches: 33, Indels: 24
0.67 0.19 0.14
Matches are distributed among these distances:
20 4 0.03
21 28 0.24
22 75 0.65
23 8 0.07
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (22 bp):
TAAATTATCTATGATTTACTAC
Found at i:26461976 original size:20 final size:20
Alignment explanation
Indices: 26461938--26461975 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26461928 TTTGATAACA
*
26461938 TTTTGATTTTTGATTTTTTG
1 TTTTCATTTTTGATTTTTTG
26461958 TTTTCATTTTT-ATTTTTT
1 TTTTCATTTTTGATTTTTT
26461976 TAAATTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.11, C:0.03, G:0.08, T:0.79
Consensus pattern (20 bp):
TTTTCATTTTTGATTTTTTG
Found at i:26462240 original size:23 final size:22
Alignment explanation
Indices: 26462209--26462305 Score: 59
Period size: 18 Copynumber: 4.6 Consensus size: 22
26462199 TGTTTATTAT
*
26462209 ATATAATATTATTAATAAATAAA
1 ATATTATA-TATTAATAAATAAA
26462232 ATA-T-TATATTAATAAAT--A
1 ATATTATATATTAATAAATAAA
*
26462250 ATA-TAT-TATTAAT--ATAAT
1 ATATTATATATTAATAAATAAA
*
26462268 ATATTATTATGATTATATTAAT-AA
1 ATATTA-TAT-ATTA-ATAAATAAA
26462292 ATATTATTATATTA
1 ATATTA-TATATTA
26462306 TTAACAACAA
Statistics
Matches: 61, Mismatches: 3, Indels: 20
0.73 0.04 0.24
Matches are distributed among these distances:
16 2 0.03
18 15 0.25
19 3 0.05
20 12 0.20
21 3 0.05
22 4 0.07
23 9 0.15
24 11 0.18
25 2 0.03
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (22 bp):
ATATTATATATTAATAAATAAA
Found at i:26462284 original size:19 final size:16
Alignment explanation
Indices: 26462172--26462276 Score: 72
Period size: 16 Copynumber: 6.3 Consensus size: 16
26462162 ACAATTATTA
*
26462172 TATTAATAAAATAATAT
1 TATTAATATAAT-ATAT
* * *
26462189 T-TTATTATTATGT-T
1 TATTAATATAATATAT
26462203 TATTATATATAATATTAT
1 TATTA-ATATAATA-TAT
* *
26462221 TAATAA-ATAAAATATT
1 TATTAATATAATATA-T
26462237 ATATTAATAAATAATATAT
1 -TATTAAT--ATAATATAT
26462256 TATTAATATAATATAT
1 TATTAATATAATATAT
26462272 TATTA
1 TATTA
26462277 TGATTATATT
Statistics
Matches: 68, Mismatches: 11, Indels: 19
0.69 0.11 0.19
Matches are distributed among these distances:
14 2 0.03
15 6 0.09
16 32 0.47
17 8 0.12
18 12 0.18
19 1 0.01
20 7 0.10
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.50
Consensus pattern (16 bp):
TATTAATATAATATAT
Found at i:26462541 original size:22 final size:21
Alignment explanation
Indices: 26462505--26462600 Score: 97
Period size: 22 Copynumber: 4.4 Consensus size: 21
26462495 AATTTGTCTT
*
26462505 TAATTTACTACTATATTATTA
1 TAATTTACTATTATATTATTA
*
26462526 TACATTTA-TAATTATATTATAA
1 TA-ATTTACT-ATTATATTATTA
26462548 TTAATTTACTATTA-AGTTATTA
1 -TAATTTACTATTATA-TTATTA
*
26462570 TGTATTTACTATTATATTATTA
1 T-AATTTACTATTATATTATTA
26462592 TTAATTTAC
1 -TAATTTAC
26462601 GACTAAGTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
21 5 0.08
22 52 0.84
23 5 0.08
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (21 bp):
TAATTTACTATTATATTATTA
Found at i:26462557 original size:44 final size:44
Alignment explanation
Indices: 26462504--26462611 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 44
26462494 TAATTTGTCT
26462504 TTAATTTACTACTATA-TTATTATACATTTA-TAATTATATTATAA
1 TTAATTTACTACTA-AGTTATTATACATTTACT-ATTATATTATAA
* ** *
26462548 TTAATTTACTATTAAGTTATTATGTATTTACTATTATATTATTA
1 TTAATTTACTACTAAGTTATTATACATTTACTATTATATTATAA
*
26462592 TTAATTTACGACTAAGTTAT
1 TTAATTTACTACTAAGTTAT
26462612 CACTAATTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.02
44 54 0.96
45 1 0.02
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (44 bp):
TTAATTTACTACTAAGTTATTATACATTTACTATTATATTATAA
Found at i:26462611 original size:22 final size:22
Alignment explanation
Indices: 26462504--26462628 Score: 91
Period size: 22 Copynumber: 5.7 Consensus size: 22
26462494 TAATTTGTCT
*
26462504 TTAATTTACTACTATA-TTATTA
1 TTAATTTACTATTA-AGTTATTA
*
26462526 -TACATTTA-TAATTATA-TTATAA
1 TTA-ATTTACT-ATTA-AGTTATTA
26462548 TTAATTTACTATTAAGTTATTA
1 TTAATTTACTATTAAGTTATTA
26462570 TGT-ATTTACTATTATA-TTATTA
1 T-TAATTTACTATTA-AGTTATTA
* * *
26462592 TTAATTTACGACTAAGTTATCA
1 TTAATTTACTATTAAGTTATTA
* *
26462614 CTAATTTAATATTAA
1 TTAATTTACTATTAA
26462629 CTTACCCATG
Statistics
Matches: 84, Mismatches: 10, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
21 6 0.07
22 73 0.87
23 5 0.06
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.51
Consensus pattern (22 bp):
TTAATTTACTATTAAGTTATTA
Found at i:26462621 original size:44 final size:44
Alignment explanation
Indices: 26462536--26462627 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
26462526 TACATTTATA
* * * * *
26462536 ATTATATTATAATTAATTTACTATTAAGTTATTATGTATTTACT
1 ATTATATTATAATTAATTTACGACTAAGTTATCATGAATTTAAT
*
26462580 ATTATATTATTATTAATTTACGACTAAGTTATCACT-AATTTAAT
1 ATTATATTATAATTAATTTACGACTAAGTTATCA-TGAATTTAAT
26462624 ATTA
1 ATTA
26462628 ACTTACCCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (44 bp):
ATTATATTATAATTAATTTACGACTAAGTTATCATGAATTTAAT
Found at i:26467555 original size:20 final size:21
Alignment explanation
Indices: 26467530--26467569 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
26467520 AGTTCCTTTT
*
26467530 GAGTCTAATTATAA-AAAAAG
1 GAGTCTAATAATAATAAAAAG
26467550 GAGTCTAATAATAATAAAAA
1 GAGTCTAATAATAATAAAAA
26467570 ATTTATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.57, C:0.05, G:0.12, T:0.25
Consensus pattern (21 bp):
GAGTCTAATAATAATAAAAAG
Found at i:26477914 original size:26 final size:26
Alignment explanation
Indices: 26477867--26477920 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
26477857 ATAGATTGTT
* *
26477867 TTATGAAATTTTCTCTCGGTAATTAG
1 TTATGAAATTTTCTCTCAGTAATGAG
* * *
26477893 TTATGAAATTTTTTGTTAGTAATGAG
1 TTATGAAATTTTCTCTCAGTAATGAG
26477919 TT
1 TT
26477921 TTTTTTCATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (26 bp):
TTATGAAATTTTCTCTCAGTAATGAG
Found at i:26480298 original size:3 final size:3
Alignment explanation
Indices: 26480290--26480340 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
26480280 GTCTTTGGCA
26480290 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
26480338 ATT
1 ATT
26480341 TATGTTTTGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:26481601 original size:17 final size:17
Alignment explanation
Indices: 26481579--26481644 Score: 69
Period size: 17 Copynumber: 3.6 Consensus size: 17
26481569 TAAACTATCA
26481579 AATATATAAATCTTAAT
1 AATATATAAATCTTAAT
* *
26481596 AATATATAAATTATTTCAAA
1 AATATATAAA-T-CTT-AAT
*
26481616 ACAAATATAAATCTTAAT
1 A-ATATATAAATCTTAAT
26481634 AATATATAAAT
1 AATATATAAAT
26481645 TACTTCAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
17 19 0.49
18 4 0.10
19 4 0.10
20 4 0.10
21 8 0.21
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
AATATATAAATCTTAAT
Found at i:26481627 original size:38 final size:38
Alignment explanation
Indices: 26481582--26481654 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
26481572 ACTATCAAAT
*
26481582 ATATAAATCTTAATAATATATAAATTATTTCAAAACAA
1 ATATAAATCTTAATAATATATAAATTACTTCAAAACAA
26481620 ATATAAATCTTAATAATATATAAATTACTTCAAAA
1 ATATAAATCTTAATAATATATAAATTACTTCAAAA
26481655 TGAGATAACT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (38 bp):
ATATAAATCTTAATAATATATAAATTACTTCAAAACAA
Found at i:26481683 original size:37 final size:38
Alignment explanation
Indices: 26481584--26481683 Score: 121
Period size: 38 Copynumber: 2.7 Consensus size: 38
26481574 TATCAAATAT
* * *
26481584 ATAAATCTTAATAATATATAAATTATTTCAAAACAAAT
1 ATAAATATTAATAATATATAAATTACTTCAAAACAAAG
* **
26481622 ATAAATCTTAATAATATATAAATTACTTCAAAA-TGAG
1 ATAAATATTAATAATATATAAATTACTTCAAAACAAAG
* *
26481659 ATAACTATTAGTAATATATAAATTA
1 ATAAATATTAATAATATATAAATTA
26481684 TAAGCTCAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
37 23 0.42
38 32 0.58
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (38 bp):
ATAAATATTAATAATATATAAATTACTTCAAAACAAAG
Found at i:26484543 original size:3 final size:3
Alignment explanation
Indices: 26484535--26484571 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
26484525 TATAGAATAC
26484535 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
26484572 TTGATTTCAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26486529 original size:42 final size:42
Alignment explanation
Indices: 26486456--26486561 Score: 149
Period size: 42 Copynumber: 2.5 Consensus size: 42
26486446 ATTTTCAAGA
**
26486456 AGCCATTTATTTTTCCAAAAGTTTTGTTGCCTCTATTTAGAGG
1 AGCCATTTATTTTT-CAAAAGTTCGGTTGCCTCTATTTAGAGG
* *
26486499 AGCCATTTATTTTTCAAAAGTTCGGTTGCCTTTGTTTAGAGG
1 AGCCATTTATTTTTCAAAAGTTCGGTTGCCTCTATTTAGAGG
* *
26486541 AGCAATTTATTTTTCCAAAGT
1 AGCCATTTATTTTTCAAAAGT
26486562 CATTGAGTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 43 0.75
43 14 0.25
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.43
Consensus pattern (42 bp):
AGCCATTTATTTTTCAAAAGTTCGGTTGCCTCTATTTAGAGG
Found at i:26486622 original size:129 final size:128
Alignment explanation
Indices: 26486460--26486747 Score: 366
Period size: 129 Copynumber: 2.2 Consensus size: 128
26486450 TCAAGAAGCC
* * * *
26486460 ATTTATTTTTCCAAAAGT-TTTGTTGCCTCTATTTAGAGGAGCCATTTA-TTTTTCAAAAGTTCG
1 ATTTATTTTTCC-AAAGTCGTTG-AGCCTCTATTTAGAGAAGCAATTTATTTTTTC-AAAG-TC-
* * *
26486523 GTT-GCCTTTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCATTGAGTATCTGCTTAGAGGAGCC
61 GTTAGCCTTTGTTTAGAAGAGCAATTTATTTTTCCAAAGTCATTGAGTAGCTGCTTAGAAGAGCC
26486587 TTT
126 TTT
* *
26486590 ATTTATTTTTTCAAAGTCGTTGAGCCTCTATTTAGATAAGCAATTTATTTTTTCAAAGTCGTTGA
1 ATTTATTTTTCCAAAGTCGTTGAGCCTCTATTTAGAGAAGCAATTTATTTTTTCAAAGTCGTT-A
* * *
26486655 GCCTTTGTTTAGAAGAGCAATTTATTTTTTCAAAGTCATTGAGTCGCTGCTTAGAAGAGCTTTT
65 GCCTTTGTTTAGAAGAGCAATTTATTTTTCCAAAGTCATTGAGTAGCTGCTTAGAAGAGCCTTT
* * *
26486719 GTTTATTTTTCCAAAGTTGTTGAGTCTCT
1 ATTTATTTTTCCAAAGTCGTTGAGCCTCT
26486748 GTCGTTGAGT
Statistics
Matches: 138, Mismatches: 16, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
127 3 0.02
128 2 0.01
129 113 0.82
130 20 0.14
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.44
Consensus pattern (128 bp):
ATTTATTTTTCCAAAGTCGTTGAGCCTCTATTTAGAGAAGCAATTTATTTTTTCAAAGTCGTTAG
CCTTTGTTTAGAAGAGCAATTTATTTTTCCAAAGTCATTGAGTAGCTGCTTAGAAGAGCCTTT
Found at i:26486624 original size:87 final size:84
Alignment explanation
Indices: 26486533--26486697 Score: 204
Period size: 87 Copynumber: 1.9 Consensus size: 84
26486523 GTTGCCTTTG
* * * *
26486533 TTTAGAGGAGCAATTTATTTTTCCAAAGTCATTGAGTATCTGCTTAGAGGAGCCTTTATTTATTT
1 TTTAGAGAAGCAATTTATTTTTCCAAAGTCATTGAGCATCTGCTTAGAAGAG-C--AATTTATTT
*
26486598 TTTCAAAGTCGTTGAGCCTCTA
63 TTTCAAAGTCATTGAGCCTCTA
* * * * * *
26486620 TTTAGATAAGCAATTTATTTTTTCAAAGTCGTTGAGCCTTTGTTTAGAAGAGCAATTTATTTTTT
1 TTTAGAGAAGCAATTTATTTTTCCAAAGTCATTGAGCATCTGCTTAGAAGAGCAATTTATTTTTT
26486685 CAAAGTCATTGAG
66 CAAAGTCATTGAG
26486698 TCGCTGCTTA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
84 23 0.34
86 1 0.01
87 43 0.64
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (84 bp):
TTTAGAGAAGCAATTTATTTTTCCAAAGTCATTGAGCATCTGCTTAGAAGAGCAATTTATTTTTT
CAAAGTCATTGAGCCTCTA
Found at i:26486735 original size:45 final size:42
Alignment explanation
Indices: 26486534--26486748 Score: 198
Period size: 42 Copynumber: 5.0 Consensus size: 42
26486524 TTGCCTTTGT
* * * *
26486534 TTAGAGGAGCAATTTATTTTTCCAAAGTCATTGAGTATCTGC
1 TTAGAAGAGCAATTTATTTTTTCAAAGTCGTTGAGTCTCTGC
* * * **
26486576 TTAGAGGAGCCTTTATTTATTTTTTCAAAGTCGTTGAGCCTCTAT
1 TTAGAAGAG-C--AATTTATTTTTTCAAAGTCGTTGAGTCTCTGC
* * *
26486621 TTAGATA-AGCAATTTATTTTTTCAAAGTCGTTGAGCCTTTGT
1 TTAGA-AGAGCAATTTATTTTTTCAAAGTCGTTGAGTCTCTGC
* *
26486663 TTAGAAGAGCAATTTATTTTTTCAAAGTCATTGAGTCGCTGC
1 TTAGAAGAGCAATTTATTTTTTCAAAGTCGTTGAGTCTCTGC
** * *
26486705 TTAGAAGAGCTTTTGTTTATTTTTCCAAAGTTGTTGAGTCTCTG
1 TTAGAAGAGC---AATTTATTTTTTCAAAGTCGTTGAGTCTCTG
26486749 TCGTTGAGTC
Statistics
Matches: 143, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 83 0.58
43 1 0.01
44 1 0.01
45 57 0.40
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (42 bp):
TTAGAAGAGCAATTTATTTTTTCAAAGTCGTTGAGTCTCTGC
Found at i:26487005 original size:23 final size:21
Alignment explanation
Indices: 26486962--26487015 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
26486952 CGATTGTAGG
*
26486962 GATTTTTATTCATTTTTATTTT
1 GATTTTT-TTCATTTTCATTTT
*
26486984 AGATTTTTTTTATTTATCATTTT
1 -GATTTTTTTCATTT-TCATTTT
*
26487007 TATTTTTTT
1 GATTTTTTT
26487016 ATGGTCTATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 14 0.52
23 13 0.48
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.74
Consensus pattern (21 bp):
GATTTTTTTCATTTTCATTTT
Found at i:26488656 original size:16 final size:17
Alignment explanation
Indices: 26488635--26488668 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
26488625 TTAATGATTC
*
26488635 TTTTAAAATAAT-TTTT
1 TTTTAAAAAAATGTTTT
26488651 TTTTAAAAAAATGTTTT
1 TTTTAAAAAAATGTTTT
26488668 T
1 T
26488669 GAAGGAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTTAAAAAAATGTTTT
Found at i:26488728 original size:58 final size:57
Alignment explanation
Indices: 26488651--26489048 Score: 317
Period size: 58 Copynumber: 6.8 Consensus size: 57
26488641 AATAATTTTT
* ** * *
26488651 TTTTAAAAAAATGTTTTTGAAGGAAAGTTGAAAGTATCAATTTTTTTTTAAAGTAAAA
1 TTTTAAAAAAAT-ATTTTGAAGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
* * * **
26488709 CTTTTAAAAATATATTTTGAAAAAGAAA-TTGAAAATATCAATTTTCCTTGAAAATAAGT
1 -TTTTAAAAAAATATTTTG--AAGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
*
26488768 TTTTCAAAAAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
1 TTTT----AAAAAAATA-TTTTGAAGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
** * * **
26488830 TTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAGT
1 TTTTAAAAAAATATTTTGAAGG-AAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
* * * *
26488888 TTTTCAAAAAAAAATATTTTTG-GGGAAAAGTTGAAAGTATTAATTTTCCTTAAAAAT-AAG
1 TTTT---AAAAAAATA-TTTTGAAGG-AAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
* * * *
26488948 TTTTCAAAAATGAAT-TTTTG-AGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAG
1 TTTT-AAAAA--AATATTTTGAAGG-AAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
*
26489007 TTTCT--AAAGATATTTTG-AGAGAAAGTTGAAAGTATCAATTTT
1 TTT-TAAAAAAATATTTTGAAG-GAAAGTTGAAAGTATCAATTTT
26489049 TCCTGCACAA
Statistics
Matches: 280, Mismatches: 40, Indels: 41
0.78 0.11 0.11
Matches are distributed among these distances:
55 2 0.01
56 28 0.10
57 11 0.04
58 91 0.32
59 41 0.15
60 15 0.05
61 45 0.16
62 42 0.15
63 5 0.02
ACGTcount: A:0.44, C:0.06, G:0.13, T:0.37
Consensus pattern (57 bp):
TTTTAAAAAAATATTTTGAAGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
Found at i:26488789 original size:121 final size:119
Alignment explanation
Indices: 26488655--26489048 Score: 387
Period size: 119 Copynumber: 3.3 Consensus size: 119
26488645 ATTTTTTTTT
* ** * * ** *
26488655 AAAAAAATGTTTTTGAAGGAAAGTTGAAAGTATCAATTTTTTTTTAAAGTAAAACTTTTAAAAAT
1 AAAAAAATATTTTTGAAGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA-TTCAAAAAAA
26488720 ATATTTTGAA-AAAGAAATTGAAAATATCAATTTTCCTTGAAAATAAGTTTTTCAAA
65 ATATTTTGAAGAAA-AAATTGAAAATATCAATTTTCCTTGAAAATAAGTTTTTC-AA
*
26488776 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTCAAAAAAAA
1 AAAAAAATATTTTTGAAGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTCAAAAAAAA
* * * * *
26488841 TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAGTTTTTCAA
66 TATTTTGAAGAAAAAATTGAAAATATCAATTTTCCTTGAAAATAAGTTTTTCAA
* * * **
26488895 AAAAAAATATTTTTG-GGGAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAGTTTTCAAAAAT
1 AAAAAAATATTTTTGAAGG-AAAGTTGAAAGTATCAATTTTCCTTGAAAATAA-AATTCAAAAA-
* * * * * * *
26488959 GAAT-TTTTG-AGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAG--TTTC--
63 AAATATTTTGAAGAAAAAATTGAAAATATCAATTTTCCTTGAAAAT-AAGTTTTTCAA
* *
26489011 -TAAAGATA-TTTTG-AGAGAAAGTTGAAAGTATCAATTTT
1 AAAAAAATATTTTTGAAG-GAAAGTTGAAAGTATCAATTTT
26489049 TCCTGCACAA
Statistics
Matches: 237, Mismatches: 30, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
114 26 0.11
115 7 0.03
118 5 0.02
119 79 0.33
120 67 0.28
121 53 0.22
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.37
Consensus pattern (119 bp):
AAAAAAATATTTTTGAAGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTCAAAAAAAA
TATTTTGAAGAAAAAATTGAAAATATCAATTTTCCTTGAAAATAAGTTTTTCAA
Found at i:26488994 original size:120 final size:120
Alignment explanation
Indices: 26488655--26488992 Score: 421
Period size: 119 Copynumber: 2.8 Consensus size: 120
26488645 ATTTTTTTTT
* * ** * * ** *
26488655 AAAAAAATGTTTTTGAAGGAAAGTTGAAAGTATCAATTTTTTTTTAAAGTAAAACTTTTAAAAAT
1 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA-TTCAAAAAAA
* * * *
26488720 ATATTTTGAA-AAAGAAATTGAAAATATCAATTTTCCTTGAAAATAAGTTTTTCAAA
65 ATATTTTTAAGGAA-AAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCAAA
*
26488776 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTCAAAAAAAA
1 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTCAAAAAAAA
*
26488841 TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAGTTTTTC-AA
66 TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCAAA
** * ** **
26488895 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAGTTTTCAAAAATG
1 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA-AATTCAAAAAAA
*
26488960 A-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
65 ATATTTTTAAGGAAAAGTTGAAAGTATCAATTTT
26488993 TCTCGAAATT
Statistics
Matches: 192, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
119 81 0.42
120 61 0.32
121 50 0.26
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.36
Consensus pattern (120 bp):
AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTCAAAAAAAA
TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCAAA
Found at i:26490803 original size:39 final size:41
Alignment explanation
Indices: 26490757--26490871 Score: 153
Period size: 39 Copynumber: 2.9 Consensus size: 41
26490747 AGATTTTTAA
* * *
26490757 TTAAAGTTTCATAGCTTTTGGTCAGAGGAGCTTTTTC-T-T
1 TTAAAGTTTCATAGCCTCTAGTCAGAGGAGCTTTTTCATAT
* * *
26490796 TTAAAGTTTCATTGCCTCTCGTCAGAGGAGCCTTTTCATAT
1 TTAAAGTTTCATAGCCTCTAGTCAGAGGAGCTTTTTCATAT
*
26490837 TTAAAGTTTCATAGCCTCTAGTCAAAGGAGCTTTT
1 TTAAAGTTTCATAGCCTCTAGTCAGAGGAGCTTTT
26490872 AAATTTTCAA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
39 32 0.49
40 1 0.02
41 32 0.49
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.41
Consensus pattern (41 bp):
TTAAAGTTTCATAGCCTCTAGTCAGAGGAGCTTTTTCATAT
Found at i:26491937 original size:19 final size:19
Alignment explanation
Indices: 26491900--26491937 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
26491890 TTCTCTTTTC
*
26491900 ATTTTATTTTTATTTTTTG
1 ATTTTATTTTTATTATTTG
*
26491919 ATTTTATTTTTGTTATTTG
1 ATTTTATTTTTATTATTTG
26491938 TTTAAGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (19 bp):
ATTTTATTTTTATTATTTG
Found at i:26492474 original size:17 final size:17
Alignment explanation
Indices: 26492452--26492485 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
26492442 TTGAGATAAT
26492452 TTAAAAAATATTT-TTTA
1 TTAAAAAA-ATTTATTTA
26492469 TTAAAAAAATTTATTTA
1 TTAAAAAAATTTATTTA
26492486 AATGATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAAAATTTATTTA
Found at i:26495715 original size:4 final size:4
Alignment explanation
Indices: 26495706--26495732 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
26495696 CAAGTTATGG
26495706 AGAA AGAA AGAA AGAA AGAA AGAA AGA
1 AGAA AGAA AGAA AGAA AGAA AGAA AGA
26495733 GAGCTTGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:26496112 original size:2 final size:2
Alignment explanation
Indices: 26496105--26496133 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
26496095 TAAATCAGGC
26496105 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26496134 TATTCATCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26497010 original size:13 final size:13
Alignment explanation
Indices: 26496986--26497019 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26496976 TCCTTTAGCC
26496986 TTAAGAAATATTT
1 TTAAGAAATATTT
* *
26496999 TTGAGAAGTATTT
1 TTAAGAAATATTT
26497012 TTAAGAAA
1 TTAAGAAA
26497020 AATATGTAAC
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (13 bp):
TTAAGAAATATTT
Found at i:26497324 original size:2 final size:2
Alignment explanation
Indices: 26497319--26497358 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
26497309 ATATATATAT
* *
26497319 AG AG AG AG AG AG AG AG AG AG AG AG AA AA AG AG AG TAG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -AG AG A
26497359 ATAAATTTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 33 0.94
3 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.42, T:0.03
Consensus pattern (2 bp):
AG
Found at i:26497473 original size:6 final size:6
Alignment explanation
Indices: 26497437--26497463 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26497427 TCAAACCAAT
26497437 ATTTTA ATTTTA ATTTTA ATTTTA ATT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATT
26497464 ATTTTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
ATTTTA
Found at i:26497692 original size:30 final size:32
Alignment explanation
Indices: 26497640--26497702 Score: 94
Period size: 30 Copynumber: 2.0 Consensus size: 32
26497630 GGATATAAAA
* *
26497640 TAAAATAATTATAATCCGTATAATATTATTTT
1 TAAAATAATTATAAACCCTATAATATTATTTT
26497672 TAAAA-AATT-TAAACCCTATAATATTATTTT
1 TAAAATAATTATAAACCCTATAATATTATTTT
26497702 T
1 T
26497703 TAAGGAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 20 0.69
31 4 0.14
32 5 0.17
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (32 bp):
TAAAATAATTATAAACCCTATAATATTATTTT
Found at i:26498709 original size:27 final size:27
Alignment explanation
Indices: 26498679--26498730 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
26498669 TAAAAATTTT
* *
26498679 AAATTATTTAAAATTTATAAAATTAAC
1 AAATAATTTAAAAATTATAAAATTAAC
*
26498706 AAATAATTTAAAAATTATTAAATTA
1 AAATAATTTAAAAATTATAAAATTA
26498731 TTTTATATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (27 bp):
AAATAATTTAAAAATTATAAAATTAAC
Found at i:26498728 original size:19 final size:20
Alignment explanation
Indices: 26498679--26498733 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
26498669 TAAAAATTTT
*
26498679 AAATTATTTAA-AATTTATA
1 AAATTATTAAATAATTTATA
**
26498698 AAATTAACAAATAATTTA-A
1 AAATTATTAAATAATTTATA
*
26498717 AAATTATTAAATTATTT
1 AAATTATTAAATAATTT
26498734 TATATCAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
19 23 0.79
20 6 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
AAATTATTAAATAATTTATA
Found at i:26499388 original size:2 final size:2
Alignment explanation
Indices: 26499383--26499412 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26499373 TGTGTGTGTG
26499383 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26499413 AATTAAAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26509748 original size:2 final size:2
Alignment explanation
Indices: 26509741--26509766 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26509731 GAAGTTTACC
26509741 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26509767 TTGTTTAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26511430 original size:11 final size:11
Alignment explanation
Indices: 26511414--26511450 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
26511404 AACATGTAAT
26511414 ATATAAATAAG
1 ATATAAATAAG
26511425 ATATAAATAAG
1 ATATAAATAAG
26511436 -TA-AAATATAG
1 ATATAAATA-AG
26511446 ATATA
1 ATATA
26511451 TAAAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
9 5 0.22
10 4 0.17
11 13 0.57
12 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (11 bp):
ATATAAATAAG
Found at i:26514751 original size:21 final size:22
Alignment explanation
Indices: 26514709--26514752 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26514699 ATCAATTGAT
*
26514709 TCATCTTATTTATTTAATAATA
1 TCATCTAATTTATTTAATAATA
*
26514731 TCATCTAATTTA-TTGATAATA
1 TCATCTAATTTATTTAATAATA
26514752 T
1 T
26514753 ATAAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.52
Consensus pattern (22 bp):
TCATCTAATTTATTTAATAATA
Found at i:26515175 original size:32 final size:32
Alignment explanation
Indices: 26515138--26515212 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
26515128 TCATATATGA
*
26515138 TAATTAAATTATAGATATTTATTTTAATAGA-T
1 TAATTAAATTATAAATATTTATTTTAATA-ACT
*
26515170 TAATTAAATGATAAATATTTATTTTAATAACT
1 TAATTAAATTATAAATATTTATTTTAATAACT
26515202 TAATT-AATTAT
1 TAATTAAATTAT
26515213 TTTATAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
31 6 0.15
32 33 0.85
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.49
Consensus pattern (32 bp):
TAATTAAATTATAAATATTTATTTTAATAACT
Found at i:26517379 original size:2 final size:2
Alignment explanation
Indices: 26517372--26517409 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
26517362 GGATGTTCCT
*
26517372 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26517410 ATGTTTGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26519458 original size:25 final size:25
Alignment explanation
Indices: 26519406--26519457 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 25
26519396 AAAATTTTGA
26519406 AAATAACTTGATTATTTAATATAAT
1 AAATAACTTGATTATTTAATATAAT
*
26519431 AAATAATTTG--TATTT--TATAAT
1 AAATAACTTGATTATTTAATATAAT
26519452 AAATAA
1 AAATAA
26519458 AATTTGTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 12 0.46
23 5 0.19
25 9 0.35
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (25 bp):
AAATAACTTGATTATTTAATATAAT
Found at i:26519460 original size:26 final size:26
Alignment explanation
Indices: 26519405--26519460 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
26519395 AAAAATTTTG
26519405 AAAATAACTTGATTATTTAATATAAT
1 AAAATAACTTGATTATTTAATATAAT
*
26519431 -AAATAATTTGTATT-TTATAATA-AAT
1 AAAATAACTTG-ATTATT-TAATATAAT
26519456 AAAAT
1 AAAAT
26519461 TTGTTAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.43
Consensus pattern (26 bp):
AAAATAACTTGATTATTTAATATAAT
Found at i:26519626 original size:34 final size:35
Alignment explanation
Indices: 26519575--26519652 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
26519565 TTATTTTTCT
26519575 TTTTA-TATCATATATATTTATATTTAAATACAT-A
1 TTTTATTATCATATATATTTATATTTAAATA-ATAA
* * *
26519609 TTTTATTATTATA-ATATTTATTTTTATATAATAA
1 TTTTATTATCATATATATTTATATTTAAATAATAA
26519643 TTTTATTATC
1 TTTTATTATC
26519653 TTCATTATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
33 2 0.05
34 30 0.79
35 6 0.16
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (35 bp):
TTTTATTATCATATATATTTATATTTAAATAATAA
Found at i:26519630 original size:20 final size:19
Alignment explanation
Indices: 26519609--26519649 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
26519599 TAAATACATA
*
26519609 TTTTATTATTATAATATTTAT
1 TTTTA-TATAATAAT-TTTAT
26519630 TTTTATATAATAATTTTAT
1 TTTTATATAATAATTTTAT
26519649 T
1 T
26519650 ATCTTCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 8 0.42
21 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTATATAATAATTTTAT
Found at i:26520244 original size:18 final size:17
Alignment explanation
Indices: 26520214--26520248 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
26520204 TAATATTATA
*
26520214 AAATTTTAAATATATTT
1 AAATTTAAAATATATTT
26520231 AAATTTAAATATATATTT
1 AAATTTAAA-ATATATTT
26520249 TTTAAATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AAATTTAAAATATATTT
Found at i:26520329 original size:25 final size:23
Alignment explanation
Indices: 26520301--26520362 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
26520291 CAATTTTCAA
* *
26520301 ATTTAAAATTTATTTTTTACATATT
1 ATTTAAAATATAATTTTTA-ATA-T
*
26520326 ATTT-TAATATAATTTTTAATAT
1 ATTTAAAATATAATTTTTAATAT
*
26520348 ATTT-AAATAAAATTT
1 ATTTAAAATATAATTT
26520363 AAATATTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
22 14 0.44
23 3 0.09
24 11 0.34
25 4 0.12
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (23 bp):
ATTTAAAATATAATTTTTAATAT
Found at i:26520356 original size:22 final size:24
Alignment explanation
Indices: 26520314--26520362 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
26520304 TAAAATTTAT
* *
26520314 TTTTTACATATTATTTTAATATAA
1 TTTTTACATATTATTTAAATAAAA
26520338 TTTTTA-ATA-TATTTAAATAAAA
1 TTTTTACATATTATTTAAATAAAA
26520360 TTT
1 TTT
26520363 AAATATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 14 0.61
23 3 0.13
24 6 0.26
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTTTACATATTATTTAAATAAAA
Found at i:26520367 original size:21 final size:22
Alignment explanation
Indices: 26520316--26520373 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
26520306 AAATTTATTT
* * *
26520316 TTTACATATTATTTTAATATAAT
1 TTTAAATA-TATTTAAATATAAA
*
26520339 TTTTAATATATTTAAATA-AAA
1 TTTAAATATATTTAAATATAAA
*
26520360 TTTAAATATTTTTA
1 TTTAAATATATTTA
26520374 TTTTATAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 14 0.48
22 9 0.31
23 6 0.21
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTAAATATATTTAAATATAAA
Found at i:26520455 original size:11 final size:11
Alignment explanation
Indices: 26520435--26520483 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
26520425 TTCTATTTTT
26520435 ATTTATAATTTA
1 ATTTA-AATTTA
26520447 ATTTAAATTTA
1 ATTTAAATTTA
* *
26520458 ATATATATTTAA
1 ATTTAAATTT-A
26520470 TATTTAAATTTA
1 -ATTTAAATTTA
26520482 AT
1 AT
26520484 CCGAGTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
11 16 0.52
12 7 0.23
13 8 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
ATTTAAATTTA
Found at i:26520960 original size:12 final size:13
Alignment explanation
Indices: 26520943--26520971 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26520933 TATTCTTTTT
26520943 GAAAAAG-AAAAA
1 GAAAAAGAAAAAA
26520955 GAAAAAGAAAAAA
1 GAAAAAGAAAAAA
26520968 GAAA
1 GAAA
26520972 TTGTATCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:26521567 original size:30 final size:28
Alignment explanation
Indices: 26521531--26521626 Score: 86
Period size: 29 Copynumber: 3.2 Consensus size: 28
26521521 ACAAACAGAA
26521531 AAATTTTAAATTTTATCATTTTATTTAAAT
1 AAATTTTAAATTTT-T-ATTTTATTTAAAT
* * *
26521561 AAATTTTTATATTTTTGTTATATTTAAAT
1 AAA-TTTTAAATTTTTATTTTATTTAAAT
* *
26521590 AAGTTATT-AATTTTTAATTTATATTTAAAC
1 AAATT-TTAAATTTTT-ATTT-TATTTAAAT
26521620 AAATTTT
1 AAATTTT
26521627 TAACATTTAA
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
28 8 0.15
29 19 0.36
30 16 0.30
31 10 0.19
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (28 bp):
AAATTTTAAATTTTTATTTTATTTAAAT
Found at i:26521636 original size:30 final size:30
Alignment explanation
Indices: 26521548--26521692 Score: 136
Period size: 30 Copynumber: 4.9 Consensus size: 30
26521538 AAATTTTATC
*
26521548 ATTT-TATTTAAATAAATTTTT-ATATTT-
1 ATTTATATTTAAATAAATTTTTAACATTTA
* * * **
26521575 TTGTTATATTTAAATAAGTTATTAATTTTTA
1 AT-TTATATTTAAATAAATTTTTAACATTTA
*
26521606 ATTTATATTTAAACAAATTTTTAACATTTA
1 ATTTATATTTAAATAAATTTTTAACATTTA
* * *
26521636 ATTTATATCTT-AACAAATTCTTAAAATTTA
1 ATTTATAT-TTAAATAAATTTTTAACATTTA
* *
26521666 ATTTATACTTAGATAAATTTTTAACAT
1 ATTTATATTTAAATAAATTTTTAACAT
26521693 AAATTAATGT
Statistics
Matches: 95, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
27 1 0.01
28 2 0.02
29 17 0.18
30 72 0.76
31 3 0.03
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (30 bp):
ATTTATATTTAAATAAATTTTTAACATTTA
Found at i:26523395 original size:12 final size:13
Alignment explanation
Indices: 26523378--26523424 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
26523368 CAACAAAAAT
26523378 TTTTAATTATT-A
1 TTTTAATTATTAA
*
26523390 TTTTAATTTTTAA
1 TTTTAATTATTAA
*
26523403 TTTTAATT-TTGA
1 TTTTAATTATTAA
26523415 -TTTAATTATT
1 TTTTAATTATT
26523425 TTTAATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 7 0.23
12 15 0.48
13 9 0.29
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (13 bp):
TTTTAATTATTAA
Found at i:26523399 original size:19 final size:19
Alignment explanation
Indices: 26523375--26523417 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
26523365 ATACAACAAA
26523375 AATTTTTAATTATT-ATTTT
1 AATTTTTAATT-TTAATTTT
26523394 AATTTTTAATTTTAATTTT
1 AATTTTTAATTTTAATTTT
*
26523413 GATTT
1 AATTT
26523418 AATTATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
AATTTTTAATTTTAATTTT
Found at i:26524582 original size:93 final size:93
Alignment explanation
Indices: 26524413--26524676 Score: 428
Period size: 93 Copynumber: 2.9 Consensus size: 93
26524403 ATTTTGTTTT
* * * * * *
26524413 TAAATAAAACAAAAAGTATTCCT-GTCCTT-AAAAT-AA-ATGAGTTAGATTATTATGCAATTTA
1 TAAATAAAACAAAAAGTATT-ATGGTCTTTAAAAATAAATATGAATGAGACTATCATGCAATTTA
26524474 TTAATATTTATTTTTAAGAATTTGATTAA
65 TTAATATTTATTTTTAAGAATTTGATTAA
26524503 TAAATAAAACAAAAAGTATTATGGTCTTTAAAAATAAATATGAATGAGACTATCATGCAATTTAT
1 TAAATAAAACAAAAAGTATTATGGTCTTTAAAAATAAATATGAATGAGACTATCATGCAATTTAT
26524568 TAATATTTATTTTTAAGAATTTGATTAA
66 TAATATTTATTTTTAAGAATTTGATTAA
*
26524596 TAAATAAAACAAAAAATATTATGGTCTTTAAAAATAAATATGAATGAGACTATCATGCAATTTAT
1 TAAATAAAACAAAAAGTATTATGGTCTTTAAAAATAAATATGAATGAGACTATCATGCAATTTAT
26524661 TAATATTTATTTTTAA
66 TAATATTTATTTTTAA
26524677 AAACCTAATT
Statistics
Matches: 163, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
89 1 0.01
90 25 0.15
91 5 0.03
92 2 0.01
93 130 0.80
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.39
Consensus pattern (93 bp):
TAAATAAAACAAAAAGTATTATGGTCTTTAAAAATAAATATGAATGAGACTATCATGCAATTTAT
TAATATTTATTTTTAAGAATTTGATTAA
Found at i:26524988 original size:94 final size:94
Alignment explanation
Indices: 26524847--26525043 Score: 288
Period size: 94 Copynumber: 2.1 Consensus size: 94
26524837 ATATAATGAT
* *
26524847 ACTTCATTAATAAATAAAACAAAAAAGTATTCCAATCCTTAACAATAAATAT-GAGTGAAACTAT
1 ACTTGATTAATAAATAAAACAAAAAAGTATTCCAATCCTTAAAAATAAATATGGA-TGAAACTAT
*
26524911 CATGCAATTGATTAATATTTATTTTTAAGA
65 CATGCAATTGATTAATATTTATTTTTAAAA
**** * *
26524941 ACTTGATTAATAAATAAAACAAAAAAGTATTTGGGTCTTTAAAAATAAATATGGATGAGACTATC
1 ACTTGATTAATAAATAAAACAAAAAAGTATTCCAATCCTTAAAAATAAATATGGATGAAACTATC
*
26525006 ATGCAATTTATTAATATTTATTTTTAAAA
66 ATGCAATTGATTAATATTTATTTTTAAAA
26525035 ACTTGATTA
1 ACTTGATTA
26525044 CTATTTGTTA
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 90 0.98
95 2 0.02
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (94 bp):
ACTTGATTAATAAATAAAACAAAAAAGTATTCCAATCCTTAAAAATAAATATGGATGAAACTATC
ATGCAATTGATTAATATTTATTTTTAAAA
Found at i:26528447 original size:17 final size:17
Alignment explanation
Indices: 26528421--26528453 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26528411 TATTGGCAAA
26528421 ATTTTAAAA-TCTTTTT
1 ATTTTAAAATTCTTTTT
26528437 ATTTATAAAATTCTTTT
1 ATTT-TAAAATTCTTTT
26528454 CATATGTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 5 0.33
18 6 0.40
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTAAAATTCTTTTT
Found at i:26529032 original size:12 final size:13
Alignment explanation
Indices: 26529014--26529044 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
26529004 AAAATAAAAG
26529014 TTTTTTTTGTAAA
1 TTTTTTTTGTAAA
26529027 TTTTTTTTGTAAA
1 TTTTTTTTGTAAA
26529040 TTTTT
1 TTTTT
26529045 GGTAGCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.74
Consensus pattern (13 bp):
TTTTTTTTGTAAA
Found at i:26532789 original size:2 final size:2
Alignment explanation
Indices: 26532782--26532818 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
26532772 TGCTCCTTTT
26532782 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
26532819 TTAGGTTTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:26538023 original size:20 final size:20
Alignment explanation
Indices: 26537988--26538025 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26537978 CATATTAATT
* *
26537988 TTAAAATTTTTTATTTATCA
1 TTAAAATTTATAATTTATCA
26538008 TTAAAATTTATAATTTAT
1 TTAAAATTTATAATTTAT
26538026 TAATATTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (20 bp):
TTAAAATTTATAATTTATCA
Found at i:26538485 original size:13 final size:13
Alignment explanation
Indices: 26538469--26538495 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26538459 AGCAAAATTT
26538469 TGCAACTAAATAA
1 TGCAACTAAATAA
26538482 TGCAACTAAATAA
1 TGCAACTAAATAA
26538495 T
1 T
26538496 ACTTGATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.26
Consensus pattern (13 bp):
TGCAACTAAATAA
Found at i:26539739 original size:48 final size:48
Alignment explanation
Indices: 26539665--26539760 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
26539655 AGCAAATTAA
*
26539665 ATTATAATTCTCTTATCAAAGGATTTCTAAAATCACACCAACACTTTT
1 ATTATAATTCTCTTATCAAAGCATTTCTAAAATCACACCAACACTTTT
26539713 ATTATAATTCTCTTATCAAAGCATTTCTAAAATCACACCAACACTTTT
1 ATTATAATTCTCTTATCAAAGCATTTCTAAAATCACACCAACACTTTT
26539761 GATATGATTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.38
Consensus pattern (48 bp):
ATTATAATTCTCTTATCAAAGCATTTCTAAAATCACACCAACACTTTT
Found at i:26540749 original size:183 final size:182
Alignment explanation
Indices: 26540526--26540895 Score: 440
Period size: 183 Copynumber: 2.0 Consensus size: 182
26540516 ACAACTTTAG
***
26540526 TTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTTGGATA
1 TTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTCAAATA
* * * * * * *
26540591 AGTTTTTATGAACCGAAATAATTGTTTTATGACAAAATAAAAAGTCATAA-GAATTTTAAATAGA
66 AATTTGTATGAACCAAAATAATTATTTTATGACAAAACAAAAAGTCAGAACG-ATTTGAAATAGA
* * * * *
26540655 TAATTG-TTTAATTAGTCATATCTATTTGAGTTTGTTCGATAAATAAATATATAT
130 TAACTGTTTTAA-TAGTCATAACTATTTGAATTAGTTCGACAAATAAATATAT-T
* * *
26540709 TTTTTAAATCTCTTGCTTATTAAATTTTTG-AATGTTAATAAATTAGTATTATTTTATTTCAAAT
1 TTTTTAAATCTCTTGCTTAAT-AATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTCAAAT
* * * * *
26540773 AAATTTGTATGAGCTAAAATAATTATTTTATGACTAAACAAAATGTTAGAACGATTTGAAATAGA
65 AAATTTGTATGAACCAAAATAATTATTTTATGACAAAACAAAAAGTCAGAACGATTTGAAATAGA
* * * *
26540838 TAACTGTTTTAATAGTCTTAACTTTTTGAATTAGTTCGACAAATATATTTATT
130 TAACTGTTTTAATAGTCATAACTATTTGAATTAGTTCGACAAATAAATATATT
26540891 TTTTT
1 TTTTT
26540896 GTTATTAAAT
Statistics
Matches: 157, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
182 6 0.04
183 137 0.87
184 14 0.09
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.46
Consensus pattern (182 bp):
TTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTCAAATA
AATTTGTATGAACCAAAATAATTATTTTATGACAAAACAAAAAGTCAGAACGATTTGAAATAGAT
AACTGTTTTAATAGTCATAACTATTTGAATTAGTTCGACAAATAAATATATT
Found at i:26541405 original size:511 final size:515
Alignment explanation
Indices: 26540381--26541947 Score: 1099
Period size: 543 Copynumber: 3.0 Consensus size: 515
26540371 TTTTAAAATA
* * * * * *
26540381 TTATTAAATTAGTATTATTTTTATCTGAATAAACTTGTATGATTAAAAATAATTTTTTATGACAA
1 TTATTAAATTAGTATTATCTTAATCAGAATAAACTTATATGATAAAAAATAATTTTCTATGACAA
* * * ** * * *
26540446 AACAAAGATTATAAAAATTTGAGATTGATATTTATTCAAATAGTTGTAACTATTTGAACCGGTTC
66 AACAAAGATCATAAAAATTTGAGATAGATAATTATTCAAATAGTCATAACTATATAAACCGATTC
*
26540511 TAAAAACAACTTTAGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATT
131 TAAAAACAACTTTAGTTTTTAAA-CTCTTGCTTAATAATTTTTAAAATATTAATAAAGTAGTATT
* **
26540576 ATTTTATTTTGGATAAGTTTTTATGAACCGAAATAATTGTTTTATGACAAAATAAAAAGTCATAA
195 ATTTTATTTTGAATAAGTTTTTATGAACAAAAATAATTGTTTTATGACAAAATAAAAAGTCATAA
* * * * * * * *
26540641 GAATTTTAAATAGATAATTGTTTAATTAGTCATATCTATTTGAGTTTGTTCGATAAATAAATATA
260 GAATTTGAAACAGATAACTGTTCAAATAGTCAGATCTATTTAACTTTGTTCGATAAATAAATATA
* * *
26540706 TATTTTTTAAATCTCTTGCTTATTAAATTTTTGAATGTTAATAAATTAGTATTATTTTATTTCAA
325 TATTTTTTAAATCTCTTGCTTATTAAATTTTTAAATATTAATAAATTAGTATTATTTTATTCCAA
* * * **
26540771 ATAAATTTGTATGAGCTAAAATAATTATTTTATGACTAAACAAAATGTTAGAACGATTTGAAATA
390 ATAAACTTGTATGAACTAAAATAAATATTTTATGACTAAACAAAATGCCAGAACGATTTGAAATA
* ** * * * *
26540836 GATAACTGTTTTAATAGTCTTAACTTTTTGAATTAGTTCGACAAATATATTTATTTTTTTG
455 AATAACTGTTCAAATAGTCATAACTATTTGAATTAGTTCGACAAACAGATTTATTTTTTTG
**
26540897 TTATTAAATTAGTATTATCTTAATCAGAATAGGCTTATATGA-AAAGAAATAATTGTTCTATGAC
1 TTATTAAATTAGTATTATCTTAATCAGAATAAACTTATATGATAAA-AAATAATT-TTCTATGAC
* * * * * *
26540961 AAAATAAAGATCATAATAATTTGATATAGATAATTGTTTAAATAGTCATAACTATATAAACTGAT
64 AAAACAAAGATCATAAAAATTTGAGATAGATAATTATTCAAATAGTCATAACTATATAAACCGAT
* * *
26541026 T-TGATAAATAGA-TTTAGTTTTTAAA-TC-T-CTTATTAATTTTTAAAATATTAATAAA-TAAG
129 TCT-AAAAACA-ACTTTAGTTTTTAAACTCTTGCTTAATAATTTTTAAAATATTAATAAAGT-AG
*
26541085 TATTATTTTATTTTGAATAA-TTTTATATGAACAAAAATAATTGTTTTATGATAAAATAAAATA-
191 TATTATTTTATTTTGAATAAGTTTT-TATGAACAAAAATAATTGTTTTATGACAAAATAAAA-AG
* * ** * *
26541148 TCATAAGGATTTGAAACAGATAACTGTTCAAATGGATTGGA-GTATTTAAACTTATG-T-GGT-A
254 TCATAAGAATTTGAAACAGATAACTGTTCAAATAG-TCAGATCTATTT-AACTT-TGTTCGATAA
* *
26541209 A-ACATATTTATTTTTTAAATCTTCTAT-C-TATT-AATTTTTAAAATATTAATAAATTAGTATT
316 ATAAATATATATTTTTTAAATC-TCT-TGCTTATTAAATTTTT-AAATATTAATAAATTAGTATT
* * * * * *
26541270 ATTTTATTCCGAATAAACTTGTATGAATTGAACTAAATGTTTTATGA-TAAAACAAAA-GACCAT
378 ATTTTATTCCAAATAAACTTGTATGAACTAAAATAAATATTTTATGACT-AAACAAAATG-CCAG
* * *
26541333 AACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTT-AAGCTTA-TTC-AGTAAACAG
441 AACGATTTGAAATAAATAACTGTTCAAATAGTCATAACTATTTGAA--TTAGTTCGA-CAAACAG
*
26541395 ATTTATTTTTTAAATCTT
503 ATTTA-TTTTT---T-TG
* *
26541413 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATCTTATTTCGAATAAACTTATAT-A-
1 TTA-TTA--AA---TT--AGTATT-AT---CT--TA--ATC--A----GAATAAACTTATATGAT
* * ** * * *
26541476 AATAGAAACAATCGGTT-TATGACAAAACAAA-ATGTCATAACTATTTGAAATAAATAATTGTTC
44 AA-A-AAATAAT--TTTCTATGACAAAACAAAGA--TCATAAAAATTTGAGATAGATAATTATTC
* * * * * * * *
26541539 GAATAATTATAACTATTTAAA-TGTGTTC-AGAAAACATA-TTTA-TTTTTAAAATTTTTGCTTA
103 AAATAGTCATAACTATATAAACCG-ATTCTA-AAAACA-ACTTTAGTTTTT-AAACTCTTGCTTA
** * *** * * *
26541600 ATAATTTTTGGAATATTAATAAATTTA-TATTATTTTATTCAAAATAAGCTTGTATGAGCAAAAA
164 ATAATTTTTAAAATATTAATAAA-GTAGTATTATTTTATTTTGAATAAGTTTTTATGAACAAAAA
* * * * *
26541664 AAATTATTTTATGACAAAA-AAAAATGTCATAACG-ATTTGAAATAGATAATTGTTCAAATAATC
228 TAATTGTTTTATGACAAAATAAAAA-GTCATAA-GAATTTGAAACAGATAACTGTTCAAATAGTC
* * * * * * *
26541727 ATAACTATTTAAAC-TTGTTTGGTAAATAAATTTAT-TTTTTTAAATCTCTTACTTGTT-AATTT
291 AGATCTATTT-AACTTTGTTCGATAAATAAATATATATTTTTTAAATCTCTTGCTTATTAAATTT
** * * ** * * * * *
26541789 TTGAAATATTAATAAATTAACATTATTTTATTTCAAAT-AAGTCTAAATGAACTGATACAATTGT
355 TT-AAATATTAATAAATTAGTATTATTTTATTCCAAATAAACT-TGTATGAACTAAAATAAATAT
* * * * * * * *
26541853 TTTAT-AATAAAACAGAAA-GTCATAACGATTTGAAATAGATAATTATTAAAATAGTTATAACTA
418 TTTATGACT-AAACA-AAATGCCAGAACGATTTGAAATAAATAACTGTTCAAATAGTCATAACTA
* *
26541916 TTTGAACTTA-TTCGATAAACATATTTATTTTT
481 TTTGAA-TTAGTTCGACAAACAGATTTATTTTT
26541948 AAAATTTTTT
Statistics
Matches: 840, Mismatches: 136, Indels: 124
0.76 0.12 0.11
Matches are distributed among these distances:
510 12 0.01
511 136 0.16
512 19 0.02
513 115 0.14
514 8 0.01
515 7 0.01
516 49 0.06
517 81 0.10
518 1 0.00
519 2 0.00
522 2 0.00
524 5 0.01
525 2 0.00
528 1 0.00
530 2 0.00
532 3 0.00
534 1 0.00
537 4 0.00
538 41 0.05
539 57 0.07
540 4 0.00
541 10 0.01
542 122 0.15
543 143 0.17
544 13 0.02
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (515 bp):
TTATTAAATTAGTATTATCTTAATCAGAATAAACTTATATGATAAAAAATAATTTTCTATGACAA
AACAAAGATCATAAAAATTTGAGATAGATAATTATTCAAATAGTCATAACTATATAAACCGATTC
TAAAAACAACTTTAGTTTTTAAACTCTTGCTTAATAATTTTTAAAATATTAATAAAGTAGTATTA
TTTTATTTTGAATAAGTTTTTATGAACAAAAATAATTGTTTTATGACAAAATAAAAAGTCATAAG
AATTTGAAACAGATAACTGTTCAAATAGTCAGATCTATTTAACTTTGTTCGATAAATAAATATAT
ATTTTTTAAATCTCTTGCTTATTAAATTTTTAAATATTAATAAATTAGTATTATTTTATTCCAAA
TAAACTTGTATGAACTAAAATAAATATTTTATGACTAAACAAAATGCCAGAACGATTTGAAATAA
ATAACTGTTCAAATAGTCATAACTATTTGAATTAGTTCGACAAACAGATTTATTTTTTTG
Found at i:26541690 original size:180 final size:180
Alignment explanation
Indices: 26540901--26549333 Score: 4619
Period size: 181 Copynumber: 46.8 Consensus size: 180
26540891 TTTTTGTTAT
* * * * * * *
26540901 TAAATTAGTATTATCTTAATC-AGAATAGGCTTATATGAA-AAGAAATAATTGTTCTATGAC-AA
1 TAAATTAGTATTATTTTATTCTA-AATAAGCTTGTATGAACAA-AAAAAATTATTTTATGACAAA
* * * * * *
26540963 AATAAA-GATCATAA-TAATTTGATATAGATAATTGTTTAAATAGTCATAACTATATAAACTGAT
64 AAAAAATG-TCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATTG-T
* * * *
26541026 T-TGATAAATAGATTTAGTTTTTAAATC---T-CTTATTAATTTTTAAAATATTAA
126 TCAG-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * ** * * * * *
26541077 TAAATAAGTATTATTTTATTTTGAATAATTTTATATGAACAAAAATAATTGTTTTATGATAAAAT
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
* ** * * * * * * *
26541142 AAAATATCATAAGGATTTGAAACAGATAACTGTTCAAAT-G-GATTGGAGTATTTAAACTTATGT
66 AAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCA-T-AACTATTTAAA-TTGT-T
* * * *
26541205 -GGTAAACATATTTATTTTTTAAATCTTCTA-TCTATTAATTTTTAAAATATTAA
127 CAGTAAACAGATTTATTTTTTAAATCTTTTACT-TATTAATTTTTGAAATATTAA
** * ** ** * *
26541258 TAAATTAGTATTATTTTATTCCGAATAAACTTGTATGAATTGAACTAAA-TGTTTTATGATAAAA
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAA-CAAAAAAAATTATTTTATGACAAAA
* * * * * *
26541322 CAAAA-GACCATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAGCTTATTC
65 AAAAATG-TCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAA-ATTGTTC
26541386 AGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
128 AGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * * * ***
26541439 TAAATTAGTATTATCTTATT-TCGAATAAACTTATATAAATAGAAACAATCGGTTTATGACAAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * *
26541503 CAAAATGTCATAACTATTTGAAATAAATAATTGTTCGAATAATTATAACTATTTAAATGTGTTCA
65 AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAAT-TGTTCA
* * * * * *
26541568 GAAAACATATTTATTTTTAAAAT-TTTTGCTTAATAATTTTTGGAATATTAA
129 GTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* *
26541619 TAAATTTA-TATTATTTTATTCAAAATAAGCTTGTATGAGCAAAAAAAATTATTTTATGACAAAA
1 TAAA-TTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * **
26541683 AAAAATGTCATAACGATTTGAAATAGATAATTGTTCAAATAATCATAACTATTTAAACTTGTTTG
65 AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAA-TTGTTCA
* * * *
26541748 GTAAATAAATTTATTTTTTTAAATCTCTTACTTGTTAATTTTTGAAATATTAA
129 GTAAACAGATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
** ** ** * * * * *
26541801 TAAATTAACATTATTTTATT-TCAAATAAG-TCTAAATGAACTGATACAATTGTTTTATAATAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCT-TGTATGAACAAAAAAAATTATTTTATGACAAA
* * * * * *
26541864 ACAGAAA-GTCATAACGATTTGAAATAGATAATTATTAAAATAGTTATAACTATTTGAACTTATT
64 A-AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAATTGTT
* * * * *
26541928 C-GATAAACATATTTATTTTTAAAATTTTTTACTTATTAATTATCGAAATATTAA
127 CAG-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * *
26541982 TAAATTAATATTATTTTAATT-TAAATAAGCTTGTATAAACAAAAATAATTATTTTATGACAAAA
1 TAAATTAGTATTATTTT-ATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * *
26542046 TAAAAA-GTTATAACTATTTAAAATAAATAATTATTCAAATAGTCATAATTATTTAAACTTATTC
65 -AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAA-TTGTTC
* * * * ** *
26542110 AGTAAACAAATTTATTTTTTAAATCGTTTAATTATTAATCGTTTG-GTTTTTAA
128 AGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAAT-TTTTGAAATATTAA
* *
26542163 TAAATTTA-TATTATTTTATT-TGAAATAAGCTTGTATGAA-GAAGAAAATTATTTTATGA-AAA
1 TAAA-TTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAA
* * * * *
26542224 AACAAAATGTTATAA-TGATTTGAAATAGATAATTGTTCAAATAGCCATAACTATTTGAACTTAT
64 AA-AAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAATTGT
** * * * *
26542288 TTGGTAAATAGATTCATTTTTTAAATCTCTTATTTATTAATTTTTGAAATATTAA
126 TCAGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * * * * * *
26542343 TAAATTTGAATTATGTTATT-TGGAAGAAGTTTGTACGAACATAAACAATTATTTTTTGATAAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * ** * ** * *
26542407 CAAAAGGTTATAA-TGATTTGAAACAGACAACTGTA-T--AATCAGTTGTAACTCTTTGTACTGA
65 AAAAATGTCATAACT-ATTTGAAATAGATAA-T-TATTCAAAT-AGTCATAACTATTTAAATTGT
* * ** * *
26542468 TCAAGCT-AACATATTCATTTTTTAAATCAATTACTTATTAAATTTTAAAATATTAA
126 TC-AG-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * * *
26542524 TAAATTAGCATTACTTTATTCTGAATACGAC-TGTATGAACATAAACAATTGTTTTATGACGAAA
1 TAAATTAGTATTATTTTATTCTAAATAAG-CTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * * * *
26542588 CAAATTGTCATAA-TGATTTGAAATAAATAATTGTTCAAATAGTAATAACTAATTGAATTGGTTT
65 AAAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATT-GTTC
* *
26542652 AGTAAACAGATTTATTTTTT-AA--TTCT-CTTATTAATTTTTAAAATATTAA
128 AGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * *
26542701 TAAATTAATATTATTTTATACCAAATAAACTTGTTTGAACAAAAAATATTTGTTTTATGACAAAA
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAA-AATTATTTTATGACAAAA
* * * * * * * * *
26542766 CAAAATGTAATAACGATTTGAAATAAATAATTTTTCAAATAGTGATAATTATTTGAACTGGTTC-
65 AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAATTGTTCA
* * * * **
26542830 GATAAATAAAATTATTTTTTAAATCTCTTACCGATTAATTTTTGAAATATTAA
129 G-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * ** *
26542883 TAAATTTA-TATTATTTTATTTTGAATAAG-TTAGAAAGAACTGAAAAAATTATTTTATAACAAA
1 TAAA-TTAGTATTATTTTATTCTAAATAAGCTT-GTATGAACAAAAAAAATTATTTTATGACAAA
* * * * * * * *
26542946 ATAAAAGGACATAAC-AGTTTG--A-A-ATAATTGTTCATATAGCCTTAACTATTTGAATTGGTT
64 AAAAAATGTCATAACTA-TTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATT-GTT
* * * * * * *
26543006 C-GACAAATAAATTTATTTTTTAAATATCTTAGTTATTAATTTTT-AGAATATTAT
127 CAG-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGA-AATATTAA
* * * ** * * *
26543060 TACATTAGTATTACTTTATT-TCGAATAAATTTGTATTAACAAAAATAATTATTTTATGACAGAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * * * * *
26543124 CAAAAGGTTATAACAATTTAAAATATATAATTATTCAAATAGTTATAACTATTTGAATTAGTTCT
65 AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATT-GTTCA
** * *
26543189 GTAAGTAGATTTATTTTTTAAATCTCTTACTTATTTAATTTTTAAAATATTAA
129 GTAAACAGATTTATTTTTTAAATCTTTTACTTA-TTAATTTTTGAAATATTAA
* * * * ** * * *
26543242 TAAGTTAGTATTATTTTATTCCAAATAGGCTTATATGATGAAAAACAATAATTTTTTGACAAAAC
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA-
* * * ** * * **
26543307 AAAAAT-TCATAACAATTTGAAATAAATAATTATTTAAATAACCATAATTATTTGAACTAATTC-
65 AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAATTGTTCA
** * * * * * * *
26543370 GATAAATTGATTTATGTTTTAAATATCTAACTTATCAAATTTTAAAATATTAA
129 G-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * *** * * *
26543423 TAAAGTAATATTATTTTATT-TCAGATAAGTTTTTATGAATTGAAACAATTGTTTTATGTCAAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * *
26543487 TAAAAGGTCATAACGATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTC-
65 AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAATTGTTCA
* * *
26543551 GATAAATA-A---A---TTT--AT-TTTT--TTA--ATTTTTTG-AATGTTAA
129 G-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * ** *
26543589 TAAATTAGTATTATTTTATT-TCAAATAAGCATGTATTAACTGAAACAATTATTTTATGACTAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGAC-AAA
* * * * * * * * * * ** *
26543653 CAAAAA-GTTAGAACGA-TTCAAAAAAATAATTGTTCTAATAATTTTAACTATTT-GATCTAGTT
64 AAAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAAT-T-GTT
** * *
26543715 CAACAAACACATTTA-TTTTTAAATC-----CTTATTAATTTTT-AGAATATTAT
127 CAGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGA-AATATTAA
** * * * * ** * *
26543763 TATTTTAGCAATATTTTACTTCGAATTAA-CTTGTATGAATTGAAATAAA-TATTTTAGGACAAA
1 TAAATTAGTATTATTTTA-TTCTAAATAAGCTTGTATGAA-CAAAAAAAATTATTTTATGACAAA
* * * * * * * *
26543826 ACAAAGATAT--TAACTATTTGAGATAGATAATTGTTCAAATAGTTATAATTATTTGAACTGGTT
64 A-AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAATTGTT
** * * * * * * ** *
26543889 TTGTAAAGATATTTAGTTTTT-AA--GTGTA-TTATTAATCTTCAAAATAGTAA
127 CAGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* ** * * ** * ** *
26543939 TAAATTAGTATTATTTTATTTTAAATAATTTTGTATGAATAGAAGCAATAATTTTACAACAAAAT
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
* * * * * * * *
26544004 AAAATATCATAACAATTTGAAATAAATAA-TAGTTCAAATGGACATGACTATTTGAATTTGTTTA
66 AAAATGTCATAACTATTTGAAATAGATAATTA-TTCAAATAGTCATAACTATTT-AAATTGTTCA
* *
26544068 GTAAACAGATTAATTTTTAAAAT-TTTTAACTTATTAATTTTT-AGAATATTAA
129 GTAAACAGATTTATTTTTTAAATCTTTT-ACTTATTAATTTTTGA-AATATTAA
** * * *
26544120 TAAATTAGTATTA-TTTATT-TCAAATAAATTTGTATGAATAAAAATAATTTTTTTATGACAAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGAC-AAA
* * *
26544183 CAAAAAAT-T-ATAA-TGATTTGAAATAAATAATTATTTAAATGGTCATAACTATTTAAATT-TT
64 -AAAAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATTGTT
* * *
26544244 CTTGGTAAATAGATTTACTTTTTT-AATCTTTTACTTATTAA-TTTTAAAATATTAA
127 C--AGTAAACAGATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * **
26544299 TAAATTAATATTATTTTATTCTAAATAAGCTTCTTTGAACAGAACAAATTGGTTTATGAC-AAAA
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
* * * * * * * * * *
26544363 CAATTAGTTATAACAATTTAAAATAAATAATTATGCAAATAATCATAACTATTTAAA-CGTACTT
66 AAAAT-GTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATTGT--TC
* * * * * * *
26544427 AGAAAATATATTTATTTTTAAAAT-TTTTATTTATTAATTTTTAAAATTTTTAA
128 AGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA-TATTAA
* * * ** * *
26544480 -AAATTTA-TATTATTTTATT-TGAAATAAGCTTGCATGAGCAGAATCAATTGTTTTATAACAAA
1 TAAA-TTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAA
* * * *
26544542 ATAAAAATGTCGTAA-TATTTTGAAATAGATAATTTTTCATATAGTCATAACTATTTGAACTTGT
64 A-AAAAATGTCATAACTA-TTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAATTGT
* * * * * * *
26544606 T-TGATAAATAGATTCATTTTTTTTAATTCTCTTACTTTTTAATTTTTGAAATATGAA
126 TCAG-TAAACAGATT--TATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * ** * * *
26544663 TAAATTAGTATTA-TTTATT-TCAAATAAGCTTATATGAGCTGAAACAATTGTTTTATTACAAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * *
26544726 AAAGGGTAATAATGATTTGAAATGATTTGAAATAGATAATTATTCAAATAGTAATGACTATTTGA
65 AAA----AAT-GTCA--T-AACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-A
* * * * * ** *
26544791 ACTTGTTCAGTAAATATATTTATTTTTTTAAATATTTTACTTATTAATTATCAAAAAATTAA
120 AATTGTTCAGTAAACAGATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * ** * * * *
26544853 TAAATTAATATTATTTTAATCCGAATAAG-TGTGTACGAACAGAAACAATTATTTTATGATAAAA
1 TAAATTAGTATTATTTTATTCTAAATAAGCT-TGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * * *
26544917 TAAAAA-GTCATAACAATTTAAAATAAATAATTATTTAAATAGTCATAACGAGTTAAACTAGTT-
65 -AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAA-TTGTTC
* * *
26544980 TGATAAACAGATTTATTTTTTTAATCTTTTATTTATTAATTGTCTT--AATATTAA
128 AG-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT-T-TTGAAATATTAA
* ** * *
26545034 TAAATTTA-TATTATTTTATT-TGAAATAAACTTGTATGAACCTAAAAAATTATTTTATAATAAA
1 TAAA-TTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAA
* * * * * * *
26545097 ACAAAAGGTTAT-AGTAATTTCAAATAGATAATTGTTCAAATAGTCATAATTATTTAAATCTGTT
64 AAAAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAAT-TGTT
** * * *
26545161 TGGTAAACAGATTCATTTTTTAAATCTCTTAATTATTAATTTTTTG-AATATTAA
127 CAGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAA-TTTTTGAAATATTAA
* * * * ** *
26545215 TAACTTAGTATTATTTTATT-TCGAATAAGTTTATATGAACTGAAATAATT-TTTTATGACAAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * *
26545278 CAAAAA-GTCATAACGATTTGAAATAGATAATTATTTAAATAGTCA-AGATTATTT-GATCTAGT
65 -AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATA-ACTATTTAAAT-T-GT
* * * **
26545340 TC-GATAAATATATTTATTTTTTAAATTTTTTACTTATTAATTGGTGAAATATTAA
126 TCAG-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * ** * * *
26545395 TAAATTAGTATTATTTTAATCTAAATAAACTTATATGAACAAAAACTATTGTTTTATAATAGAAT
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACA-AA-
* * * * * * *
26545460 AAAAAA--TCGTAACGATTTAAAATAAATAATTACTT-AAGTAGTCATAACTATTTGAACTAGTT
64 AAAAAATGTCATAACTATTTGAAATAGATAATTA-TTCAAATAGTCATAACTATTT-AAATTGTT
* * *
26545522 -TGATAAACATATTTATTTTTTAAATC---T-CTTATTAATTTTTAAAATATTAA
127 CAG-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * * * * * * *
26545572 TAGATTAGTAATATTTTATTCCAAACAAACTTATATCAAC-AAAATATTTGTTTTATGACCAAAT
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
* * * * * * **
26545636 AAAAGGTCCT-ATTAATTTGAAATTGATAATTATTCAAATAGTCATAATTATTTGAATTGGTTTG
66 AAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATT-GTTCA
* * * * *
26545700 GTGAATAGAATTATTTTTCAAATCTCTTACTTATTAATTTTTGAAATATTAA
129 GTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * ** *
26545752 TAAATTTA-TTTTATTTTATTCTGAATAAGCTAGTATGAATTAAAAAAATTATTTTATGACAAGA
1 TAAA-TTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * ** * * * *
26545816 CAAAAGGTCATAACGATTTTAAATAGATAATTGTTCATGTAATCTTAATTATTTAAACTAGTTC-
65 AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAA-TTGTTCA
* * * * * * * *
26545880 GATAAGCAAATTTATTTTTAAAATCTCTTAGTTATTAATTCTTGAAATTTTAT
129 G-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * * * * * * *
26545933 TAGATTGGTATTATTTTATTTTAAATAAACTTATATTAATAGAAATAATTGTTTAATGACAAAAC
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
* * * * * * * *
26545998 AAAATGTTATAACAATTTGAAGTATACAATTGTTCAAATAGTCATAAATATTTAAACTGGTTC-G
66 AAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAA-TTGTTCAG
* * * * * * *
26546062 ATAAACATAATTATTTTTTAAATCTCTTACTAATTAGTTTTTGAAAGATCAA
130 -TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * *
26546114 TAAATTAGTATTATTTTATTCTGAATAAGCTTGTATGATA-AAAAATAACTATTATATGACCAAA
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGA-ACAAAAAAAATTATTTTATGACAAAA
* * * * * *
26546178 CAAAATGTAATAA-TGATTTGAAATAGATAATTATTGAAATTA-CCATAATTATTTGAATTGATT
65 AAAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAA-TAGTCATAACTATTTAAATTG-TT
* * * * * *
26546241 CAGTAAACAAATTCAATTTTTAAATCATTGACTTTTTAATTTTATG-AATATTAA
127 CAGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTT-TGAAATATTAA
* * * *** *
26546295 TAAATTAGTATTATTTTATT-TCGAATAAACTTGGATGAATTGAAATAATTATTTTATGACAAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * * *
26546359 CAAAAA-GTCAGAACGATTTTAAATAAACAATTGTTCAAATAATCATAACTA-TTAAATTTTGTT
65 -AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAA--TTGTT
* * * * *
26546422 CGGTAAACAAATTTATTTTTTTAAA-CTCTTGCTTATTAATTTTTAAAATATTAA
127 CAGTAAACAGATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * *** * * * * * *
26546476 GAAATTAGTATTATTTTATTTTCGGTAAGCTTTTAAGAA-AAAAACAATTGTTTTATGTCAAAAC
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
* * * * * * * * *
26546540 AAAATATTATAA-TGATTTTAAATAAATAATTATTTAAATAATTATAACTATTTGAACTTGTTTA
66 AAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAATTGTTCA
* * * *
26546604 GTAAATAAATTTAATTTTTTCAAATCTTTTGCTTATTAATTTTTCG-AATGTTAA
129 GTAAACAGATTT-ATTTTTT-AAATCTTTTACTTATTAATTTTT-GAAATATTAA
* * * * * * ** * *
26546658 TAAATTTGGATTATTTTATTTTGAATAAACTTGTAAGATATGAAACAAA-TATTTTATGACTAAA
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGA-ACAAAAAAAATTATTTTATGACAAAA
* * * * * * * * ** * * * *
26546722 TAAAA-GGCTAGAACAATCTAAAATATATAATTATTCTAATAGTTTTAATTGTTTGAATTGGTTT
65 AAAAATGTC-ATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATT-GTTC
* * *
26546786 GGTAAACACATTTATTTTTTAAATC----ACTTATTAATTTTTGAAATATTAT
128 AGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * *
26546835 TAAACTA-TATTATTTT-TAACTGAATAAGCTTTTAT-AATTAGAAACAAATTTTTTTATGACAA
1 TAAATTAGTATTATTTTAT-TCTAAATAAGCTTGTATGAA-CA-AAAAAAATTATTTTATGACAA
* * * *
26546897 AACAAAGAT-T-TTAACGATTTGAGATTA-ATAATTATTCAAATAGTCATAACTATTTAAATTGG
63 AA-AAAAATGTCATAACTATTTGA-AATAGATAATTATTCAAATAGTCATAACTATTTAAATT-G
*
26546959 TTC-GATAAACAGATTTATTTTTTAAATCTGTTACTTATTAATTTTTGAAATATTAA
125 TTCAG-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * *
26547015 TAACTTAGTATTATTTTATT-TCGAATAGGCTTGTA-CAAGAAAAAATAATTGTTTTATGACAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAA-AATTATTTTATGACAAA
* * * * ** * * * *
26547078 ATAAAATG-CTTAGCTATTTAAAATAGATAATGGTTCAAATGGCCATAATTATTCT-AACTGATT
64 AAAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATT-TAAATTG-TT
* * * * *
26547141 CGGTAAACAGATCTATTTTTAAAAT-TTCTTATTTATTAA-TTTAGAAAATATTAA
127 CAGTAAACAGATTTATTTTTTAAATCTT-TTACTTATTAATTTTTG-AAATATTAA
* * * * * * * * *
26547195 TAAATTAGTATTATTTTA-TCCAATCTAAGTTTGTCTTAACTAAAACAATTATTTTATGATAAAT
1 TAAATTAGTATTATTTTATTCTAA-ATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * * * * * **
26547259 CAAAAGGTTATAACGATTTTAAATAGACAATTATTAAAATAATAATAACTATTTAAACTTGTTTG
65 AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAA-TTGTTCA
* *
26547324 GTAAACAGATTTATTTTTTAAAAT-TTCTTTCTTATTAATTTTTCG-AATGTTAA
129 GTAAACAGATTTATTTTTT-AAATCTT-TTACTTATTAATTTTT-GAAATATTAA
* ** * *** * **
26547377 TAAATTAGTATTAATTTATTCTAAATAAATTTATATGAATTGAAATAATTATTTTATGA-TTAAA
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
** * * * ** * ** *
26547441 CGAATATCAGAA-TGATTTGAAATAGATAAATAATTTTAATAGTCTTAACCCTTTAAACTGATTC
66 AAAATGTCATAACT-ATTTGAAATAGAT-AATTATTCAAATAGTCATAACTATTTAAATTG-TTC
* * * * *
26547505 GGTAAACAAATTTA-TTTTTAAGAAC---T-CTTATTAATTTTTTAAATATTAT
128 AGTAAACAGATTTATTTTTTAA-ATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * *
26547554 TAAATTAGTATTATTTTAATTCGAATTAA-TTTGTATGAA-TAAAAAAATTGTTTTATGACAGAA
1 TAAATTAGTATTATTTT-ATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* ** * * * * * * *
26547617 GAAAATGTCATAAAGACTTGAAATAGATAATTAACATTTTATATAATC-TCAACTGTTTGAACTA
65 AAAAATGTCATAACTATTTGAAATAGATAATT---A-TTCAAATAGTCAT-AACTATTT-AAATT
* * * * ** * ** *
26547681 GTTC-G-ACAATTAAATTTA-TTTTTAATTTTTTTGGTTATTAAGTTTCAAAATATTAT
124 GTTCAGTA-AA-CAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* ** * * ** * * * *
26547737 TAAATTAGTTTTATTTTATTCTAAATAAAATGGTATGAACAGAATCAATTGTTTGATGATAAAAT
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
* * * * * *
26547802 AAAAGGTTA-AAATGATTTAAAATAGATAATTATTCAAATAATCAAAACTATTTGAAA-TGATT-
66 AAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAATTG-TTC
* ** * * *
26547864 TGATAAGTAGATTTATTTTTTAAATCTTATACTGATTAATTTTTTAAATATTAA
128 AG-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * *
26547918 TATATTAGTATTATTTTACTT-TGAACAAACTTATATTAACAAAAATAATTATTTTATGACAAAA
1 TAAATTAGTATTATTTTA-TTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * *
26547982 TAAAAA-GTAATAA-TGATTTGAAATAGATAA-T-TGCAAATAGTTATAAATATTTAAATTGGTT
65 -AAAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATT-GTT
* * * *
26548043 -AGGTAAACAAAATTATTTTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAA
127 CA-GTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* ** * ** * *** * *
26548097 TAAATTCA-TTTTATTTTATTCCGAATAATCTAATACGAATTGAAAAATTTGTTTTATGAC-AAA
1 TAAATT-AGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* *
26548160 AAAAA-GTCATAA-TAATTTGAAATAGATAATTATTCATATAGT-ATTAACTATTTAAACTGGTT
65 AAAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCA-TAACTATTTAAA-TTGTT
* * * * *
26548222 CAGTAAATAAATTTATTTTTTAAATCTCTTAATTATTAATTTTTGAAATATTAT
127 CAGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * * * * * * * *
26548276 TAGATTAATATTATTCTATTTTGAATAAACTTTTATAAATAAAAATAATTATTTTATGATAGAAT
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
* * ** * * * * * * *
26548341 AAAAGGTTATAAAAATTTGAAGTATG-CAATTATTCAAATAGTTATAATTATTTGAACTGGTTCG
66 AAAATGTCATAACTATTTGAAATA-GATAATTATTCAAATAGTCATAACTATTT-AAATTGTTCA
* *
26548405 GTAAACAGATTTATTTTTTAAATTTTTTACTTATTAATTTTTGAAAGATTAA
129 GTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
** * * *
26548457 TAAATTAGTATTATTTTATT-TCAAATAAGCTTGTATGATTAAAAACAATTATTATATGACCAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * * * * *
26548521 CAAAA-GACAATAACGATTTGAAATAGATAAATATTGAAATGGCCATAATTATTTGAATTGATTC
65 AAAAATGTC-ATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATTG-TTC
* * * * ***
26548585 GGTAAATAGATTTACTTTGTAAATGACTTACTTATTAATTTTTGAAATATTAA
128 AGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * *** * * *
26548638 TAAATTAATATTATTTTATT-TCGAATAAACTTGTATGAATTGATAGAATTGTTTTATGACAAAA
1 TAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * * * * * *
26548702 TAAAAGGTAATAACGATTTTAAATAGACAATTGTTTAAATAGTCATAACTATTTGAATTTGTTGA
65 AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAATTGTTCA
* * * *
26548767 TTAAACAAATTTATTTTTTTTAAA-CTCTTACTTATTAATTTTGGAAATATTAA
129 GTAAACAGATTTA--TTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * ** ** * ** ** * *
26548820 GAAATTAGTATTATTTTATTTTGGATAAATTTTTATGAACTGAAGCAATTATTTTATGTCAAAAT
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
* * *
26548885 AAAAGGTCATAA-TGATTTTAAATA-ATTAATTATTCAAATAGTCATAACTATTTGAACTTGTTC
66 AAAATGTCATAACT-ATTTGAAATAGA-TAATTATTCAAATAGTCATAACTATTT-AAATTGTTC
* * * * *
26548948 GGTAAA-TGAATTTATTTTTTCAAATATTTTGCTTATTAATTTTTTG-AATGTTAA
128 AGTAAACAG-ATTTATTTTTT-AAATCTTTTACTTATTAA-TTTTTGAAATATTAA
* * * * * * * * * *
26549002 TAAATTTGAATTATTATATTCTGAATAAACTTGTAAGATA-TAAAACAAGTATTTTATAACTAAA
1 TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGA-ACAAAAAAAATTATTTTATGAC-AAA
* * * ** *
26549066 CAAAAA-GTCAGAA-TGATTTGAAATAGATAATTATTCGAATAGTTTTAACTATTTGAATTGGTT
64 AAAAAATGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATT-GTT
* * * * * *
26549129 CGGTAAACACATTTATTTTTTAAATATCTTAGTTATTAATTTTTGAAATATTAT
127 CAGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * *
26549183 TAAATTAGTATTATTTTTAATC-GAATAAGCTTGTATTATC-AAAAAATTTTTTTTATGACAAAA
1 TAAATTAGTATTA-TTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAA
* * * * * * * * **
26549246 CAAAGAT-T-TTAACGATGTGATATTGATAATTGTTCAAATAGTCTTAACTATTTTAAACTAATT
65 -AAAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTA-TTTAAA-TTGTT
** *
26549309 TGGTAAACAAATTTATTTTTTAAAT
127 CAGTAAACAGATTTATTTTTTAAAT
26549334 GATTTAAAAT
Statistics
Matches: 6450, Mismatches: 1431, Indels: 748
0.75 0.17 0.09
Matches are distributed among these distances:
163 1 0.00
164 1 0.00
165 38 0.01
166 66 0.01
167 12 0.00
169 4 0.00
171 8 0.00
172 2 0.00
173 15 0.00
174 94 0.01
175 47 0.01
176 285 0.04
177 498 0.08
178 121 0.02
179 360 0.06
180 1127 0.17
181 2411 0.37
182 914 0.14
183 224 0.03
184 72 0.01
186 5 0.00
187 1 0.00
188 2 0.00
189 2 0.00
190 45 0.01
191 90 0.01
192 5 0.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (180 bp):
TAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACAAAAAAAATTATTTTATGACAAAAA
AAAATGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAATTGTTCAGT
AAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
Found at i:26542130 original size:362 final size:362
Alignment explanation
Indices: 26540901--26549333 Score: 5143
Period size: 362 Copynumber: 23.4 Consensus size: 362
26540891 TTTTTGTTAT
* * * ** * * *
26540901 TAAATTAGTATTATCTTAATCAGAATAGGCTTATATGAA-AAGAAATAATTGTTCTATGACAAAA
1 TAAATTAGTATTATTTTATTTA-AATAAACTTGTATGAACAA-AAATAATTATTTTATGACAAAA
* * * * * * *
26540965 TAAAGA-TCATAA-TAATTTGATATAGATAATTGTTTAAATAGTCATAACTATATAAACTGATTT
64 TAAAAAGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTATTC
* * * * *
26541028 GATAAATAGATTTAGTTTTTAAA--TC-T-CTTATTAATTTTTAAAATATTAATAAATAAGTATT
128 GGTAAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATT
** * ** * * * * *
26541089 ATTTTATTTTGAATAA-TTTTATATGAACAAAAATAATTGTTTTATGATAAAATAAAATATCATA
193 ATTTTATTTCAAATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAATGTCATA
* * * * * ** * * * * *
26541153 AGGATTTGAAACAGATAACTGTTCAAATGGATT-GGAGTATTTAAACTTATGT-GGTAAACATAT
258 ACGATTTGAAATAGATAATTATTCAAATAG-TTATAACTATTTGAACTTGT-TCGATAAACAAAT
* *
26541216 TTATTTTTTAAATCTTCTA-TCTATTAATTTTTAAAATATTAA
321 TTATTTTTTAAATCTTTTACT-TATTAATTTTTGAAATATTAA
** *** * * * *
26541258 TAAATTAGTATTATTTTATTCCGAATAAACTTGTATGAATTGAACTAAATGTTTTATGATAAAA-
1 TAAATTAGTATTATTTTATT-TAAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * * *
26541322 CAAAAGACCATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAGCTTATTCA
65 AAAAAG-TCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTATTCG
* * *
26541387 GTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTA
129 GTAAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTA
* * * * ***
26541452 TCTTATTTCGAATAA-ACTTATAT-AAATAGAAACAATCGGTTTATGACAAAACAAAATGTCATA
194 TTTTATTTCAAATAAGTCTTATATGAACT-GAAACAATTATTTTATGACAAAACAAAATGTCATA
* * * * * * *
26541515 ACTATTTGAAATAAATAATTGTTCGAATAATTATAACTATTT-AAATGTGTTCAGA-AAACATAT
258 ACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACT-TGTTC-GATAAACAAAT
* * * *
26541578 TTATTTTTAAAAT-TTTTGCTTAATAATTTTTGGAATATTAA
321 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * *
26541619 TAAATTTA-TATTATTTTATTCAAAATAAGCTTGTATGAGCAAAAAAAATTATTTTATGACAAAA
1 TAAA-TTAGTATTATTTTATT-TAAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAA
* * * * *
26541683 -AAAAATGTCATAACGATTTGAAATAGATAATTGTTCAAATAATCATAACTATTTAAACTTGTTT
64 TAAAAA-GTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTATTC
* **
26541747 GGTAAATAAATTTATTTTTTTAAATCTCTTACTTGTTAATTTTTGAAATATTAATAAATTAACAT
128 GGTAAATAAATTTA-TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTAT
* * * * *
26541812 TATTTTATTTCAAATAAGTC-TAAATGAACTGATACAATTGTTTTATAATAAAACAGAAA-GTCA
192 TATTTTATTTCAAATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACA-AAATGTCA
* * *
26541875 TAACGATTTGAAATAGATAATTATTAAAATAGTTATAACTATTTGAACTTATTCGATAAACATAT
256 TAACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGATAAACAAAT
* * * *
26541940 TTATTTTTAAAATTTTTTACTTATTAATTATCGAAATATTAA
321 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * *
26541982 TAAATTAATATTATTTTAATTTAAATAAGCTTGTATAAACAAAAATAATTATTTTATGACAAAAT
1 TAAATTAGTATTATTTT-ATTTAAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * *
26542047 AAAAAGTTATAACTATTTAAAATAAATAATTATTCAAATAGTCATAATTATTTAAACTTATTCAG
65 AAAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTATTCGG
* * * ** *
26542112 TAAACAAATTTATTTTTTAAATCGT-TTAATTATTAATCGTTTG-GTTTTTAATAAATTTA-TAT
130 TAAATAAATTTATTTTTTAAATC-TCTTACTTATTAAT-TTTTGAAATATTAATAAA-TTAGTAT
* * * * *
26542174 TATTTTATTTGAAATAAG-CTTGTATGAA--GAAGAAAATTATTTTATGAAAAAACAAAATGTTA
192 TATTTTATTTCAAATAAGTCTTATATGAACTGAA-ACAATTATTTTATGACAAAACAAAATGTCA
* * ** * * * * *
26542236 TAATGATTTGAAATAGATAATTGTTCAAATAGCCATAACTATTTGAACTTATTTGGTAAATAGAT
256 TAACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGATAAACAAAT
* * *
26542301 TCATTTTTTAAATCTCTTATTTATTAATTTTTGAAATATTAA
321 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * ** * * * * * *
26542343 TAAATTTGAATTATGTTATTTGGAAGAAGTTTGTACGAACATAAACAATTATTTTTTGATAAAAC
1 TAAATTAGTATTATTTTATTT-AAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * ** * ** *
26542408 AAAAGGTTATAA-TGATTTGAAACAGACAACTGTA-T--AATCAGTTGTAACTCTTTGTACTGA-
65 AAAAAGTCATAACT-ATTTGAAATAGATAA-T-TATTCAAAT-AGTCATAACTATTTAAACTTAT
* * ** * *
26542468 TCAAGCTAACAT--ATTCATTTTTTAAATCAATTACTTATTAAATTTTAAAATATTAATAAATTA
126 TC--GGTAA-ATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTA
* * * * * * * * *
26542531 GCATTACTTTA-TTCTGAATACGAC-TGTATGAACAT-AAACAATTGTTTTATGACGAAACAAAT
188 GTATTATTTTATTTC-AAATAAGTCTTATATGAAC-TGAAACAATTATTTTATGACAAAACAAAA
* * * * * *
26542593 TGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTAATAACTAATTGAA-TTGGTT-TAGTA
251 TGTCATAACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTT-GTTCGA-TA
* * *
26542656 AACAGATTTATTTTTT-AA--TTCT-CTTATTAATTTTTAAAATATTAA
314 AACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* ** * * *
26542701 TAAATTAATATTATTTTATACCAAATAAACTTGTTTGAACAAAAAATATTTGTTTTATGACAAAA
1 TAAATTAGTATTATTTTAT-TTAAATAAACTTGTATGAAC-AAAAATAATTATTTTATGACAAAA
* * * * * * * * * **
26542766 CAAAATGTAATAACGATTTGAAATAAATAATTTTTCAAATAGTGATAATTATTTGAACTGGTTCG
64 TAAAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTATTCG
* * **
26542831 ATAAATAAAATTATTTTTTAAATCTCTTACCGATTAATTTTTGAAATATTAATAAATTTA-TATT
129 GTAAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAA-TTAGTATT
** * * * * * * *
26542895 ATTTTATTTTGAATAAG--TTAGAAAGAACTGAAAAAATTATTTTATAACAAAATAAAAGGACAT
193 ATTTTATTTCAAATAAGTCTTA-TATGAACTGAAACAATTATTTTATGACAAAACAAAATGTCAT
* * * * *
26542958 AAC-AGTTTG--A-A-ATAATTGTTCATATAGCCT-TAACTATTTGAA-TTGGTTCGACAAATAA
257 AACGA-TTTGAAATAGATAATTATTCAAATAG-TTATAACTATTTGAACTT-GTTCGATAAACAA
* * * *
26543016 ATTTATTTTTTAAATATCTTAGTTATTAATTTTT-AGAATATTAT
319 ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGA-AATATTAA
* * * * * * *
26543060 TACATTAGTATTACTTTATTTCGAATAAATTTGTATTAACAAAAATAATTATTTTATGACAGAAC
1 TAAATTAGTATTATTTTATTT-AAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * * * * *
26543125 AAAAGGTTATAACAATTTAAAATATATAATTATTCAAATAGTTATAACTATTTGAA-TTAGTTCT
65 AAAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTA-TTCG
* * * *
26543189 GTAAGTAGATTTATTTTTTAAATCTCTTACTTATTTAATTTTTAAAATATTAATAAGTTAGTATT
129 GTAAATAAATTTATTTTTTAAATCTCTTACTTA-TTAATTTTTGAAATATTAATAAATTAGTATT
* * * *
26543254 ATTTTATTCCAAAT-AGGCTTATATG-A-TGAAAAACAATAATTTTTTGACAAAACAAAAAT-TC
193 ATTTTATTTCAAATAAGTCTTATATGAACTG--AAACAATTATTTTATGACAAAAC-AAAATGTC
* * * *** * ** ***
26543315 ATAACAATTTGAAATAAATAATTATTTAAATAACCATAATTATTTGAACTAATTCGATAAATTGA
255 ATAACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGATAAACAAA
* * * * * * *
26543380 TTTATGTTTTAAATATCTAACTTATCAAATTTTAAAATATTAA
320 TTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * ** * *** * * *
26543423 TAAAGTAATATTATTTTATTTCAGATAAGTTTTTATGAATTGAAACAATTGTTTTATGTCAAAAT
1 TAAATTAGTATTATTTTATTT-AAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * * * *
26543488 AAAAGGTCATAACGATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGA
65 AAAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTATTCGG
*
26543553 TAAATAAATTTA---TTT---T-T-TTA---A-T--TTTTTG-AATGTTAATAAATTAGTATTAT
130 TAAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTAT
* * * * * * *
26543603 TTTATTTCAAATAAG-CATGTATTAACTGAAACAATTATTTTATGACTAAACAAAAAGTTAGAAC
195 TTTATTTCAAATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAATGTCATAAC
* * * * * * * * * * * *
26543667 GA-TTCAAAAAAATAATTGTTCTAATAATTTTAACTATTTGATCTAGTTCAACAAACACATTTA-
260 GATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGATAAACAAATTTAT
*
26543730 TTTTTAAATC-----CTTATTAATTTTT-AGAATATTAT
325 TTTTTAAATCTTTTACTTATTAATTTTTGA-AATATTAA
** * * ** * *** * * *
26543763 TATTTTAGCAATATTTTACTTCGAATTAACTTGTATGAATTGAAATAAATATTTTAGGACAAAAC
1 TAAATTAGTATTATTTTA-TTTAAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * * * ** **
26543828 AAAGA-T-ATTAACTATTTGAGATAGATAATTGTTCAAATAGTTATAATTATTTGAACTGGTTTT
65 AAAAAGTCA-TAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTATTCG
* * * * * * ** *
26543891 GTAAAGATATTTAGTTTTT-AA-GT-GTA-TTATTAATCTTCAAAATAGTAATAAATTAGTATTA
129 GTAAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTA
* * * * * ** * *
26543952 TTTTATTTTAAATAA-TTTTGTATGAA-TAGAAGCAATAATTTTACAACAAAATAAAATATCATA
194 TTTTATTTCAAATAAGTCTTATATGAACT-GAAACAATTATTTTATGACAAAACAAAATGTCATA
* * * ** * * * *
26544015 ACAATTTGAAATAAATAA-TAGTTCAAATGGACATGACTATTTGAATTTGTT-TAGTAAACAGAT
258 ACGATTTGAAATAGATAATTA-TTCAAATAGTTATAACTATTTGAACTTGTTCGA-TAAACAAAT
* *
26544078 TAATTTTTAAAAT-TTTTAACTTATTAATTTTT-AGAATATTAA
321 TTATTTTTTAAATCTTTT-ACTTATTAATTTTTGA-AATATTAA
* * * *
26544120 TAAATTAGTATTA-TTTATTTCAAATAAATTTGTATGAATAAAAATAATTTTTTTATGACAAAAC
1 TAAATTAGTATTATTTTATTT-AAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * *
26544184 AAAAAATTATAA-TGATTTGAAATAAATAATTATTTAAATGGTCATAACTATTTAAA-TT-TTCT
65 AAAAAGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTATTC-
* * * *
26544246 TGGTAAATAGATTTACTTTTTT-AATCTTTTACTTATTAA-TTTTAAAATATTAATAAATTAATA
128 -GGTAAATAAATTTA-TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTA
* * * ** *
26544309 TTATTTTA-TTCTAAATAAG-CTTCTTTGAACAG-AACAAATTGGTTTATGACAAAAC-AATTAG
191 TTATTTTATTTC-AAATAAGTCTTATATGAACTGAAAC-AATTATTTTATGACAAAACAAAAT-G
* * * * * * * * ** * *
26544370 TTATAACAATTTAAAATAAATAATTATGCAAATAATCATAACTATTTAAACGTACTTAGA-AAAT
253 TCATAACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAAC-TTGTTCGATAAAC
* * * * *
26544434 ATATTTATTTTTAAAAT-TTTTATTTATTAATTTTTAAAATTTTTAA
317 AAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA-TATTAA
* * * * * *
26544480 -AAATTTA-TATTATTTTATTTGAAATAAGCTTGCATGAGC-AGAATCAATTGTTTTATAACAAA
1 TAAA-TTAGTATTATTTTATTT-AAATAAACTTGTATGAACAAAAAT-AATTATTTTATGACAAA
* * * * *
26544542 ATAAAAATGTCGTAA-TATTTTGAAATAGATAATTTTTCATATAGTCATAACTATTTGAACTTGT
63 ATAAAAA-GTCATAACTA-TTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTAT
* * * * * * *
26544606 TTGATAAATAGATTCATTTTTTTTAATTCTCTTACTTTTTAATTTTTGAAATATGAATAAATTAG
126 TCGGTAAATAAATT--TATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAG
* * * *
26544671 TATTA-TTTATTTCAAATAAG-CTTATATGAGCTGAAACAATTGTTTTATTACAAAAAAAGGGTA
189 TATTATTTTATTTCAAATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACAA----A
* * * * *
26544734 ATAATGATTTGAAATGATTTGAAATAGATAATTATTCAAATAGTAATGACTATTTGAACTTGTTC
250 AT-GTCA--T--AACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTTGTTC
* * * * ** *
26544799 -AGTAAATATATTTATTTTTTTAAATATTTTACTTATTAATTATCAAAAAATTAA
310 GA-TAAACAAATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* *** * * * * *
26544853 TAAATTAATATTATTTTAATCCGAAT-AAGTGTGTACGAACAGAAACAATTATTTTATGATAAAA
1 TAAATTAGTATTATTTT-ATTTAAATAAACT-TGTATGAACAAAAATAATTATTTTATGACAAAA
* * * * * * *
26544917 TAAAAAGTCATAACAATTTAAAATAAATAATTATTTAAATAGTCATAACGAGTTAAAC-TAGTTT
64 TAAAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTA-TTC
* * * * * *
26544981 GATAAACAGATTTATTTTTTTAATCTTTTATTTATTAATTGTCTT--AATATTAATAAATTTA-T
128 GGTAAATAAATTTATTTTTTAAATCTCTTACTTATTAATT-T-TTGAAATATTAATAAA-TTAGT
* * * * * * *
26545043 ATTATTTTATTTGAAATAA-ACTTGTATGAACCT-AAAAAATTATTTTATAATAAAACAAAAGGT
190 ATTATTTTATTTCAAATAAGTCTTATATGAA-CTGAAACAATTATTTTATGACAAAACAAAATGT
* *** * * * * * * *
26545106 TATAGTAATTTCAAATAGATAATTGTTCAAATAGTCATAATTATTT-AAATCTGTTTGGTAAACA
254 CATAACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACT-TGTTCGATAAACA
* * * *
26545170 GATTCATTTTTTAAATCTCTTAATTATTAATTTTTTG-AATATTAA
318 AATTTATTTTTTAAATCTTTTACTTATTAA-TTTTTGAAATATTAA
* * ** * ** *
26545215 TAACTTAGTATTATTTTATTTCGAATAAGTTTATATGAACTGAAATAATT-TTTTATGACAAAAC
1 TAAATTAGTATTATTTTATTT-AAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * *
26545279 AAAAAGTCATAACGATTTGAAATAGATAATTATTTAAATAGTCA-AGATTATTTGATC-TAGTTC
65 AAAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATA-ACTATTTAAACTTA-TTC
* * * * **
26545342 GATAAATATATTTATTTTTTAAATTTTTTACTTATTAATTGGTGAAATATTAATAAATTAGTATT
128 GGTAAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATT
* * ** * * * * * * ** *
26545407 ATTTTA-ATCTAAATAA-ACTTATATGAACAAAAACTATTGTTTTATAATAGAATAAAAAATCGT
193 ATTTTATTTC-AAATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAATGTCAT
* * * * * * *
26545470 AACGATTTAAAATAAATAATTACTT-AAGTAGTCATAACTATTTGAACTAGTTTGATAAACATAT
257 AACGATTTGAAATAGATAATTA-TTCAAATAGTTATAACTATTTGAACTTGTTCGATAAACAAAT
*
26545534 TTATTTTTTAAATC---T-CTTATTAATTTTTAAAATATTAA
321 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * * * *
26545572 TAGATTAGTAATATTTTATTCCAAACAAACTTATATCAAC-AAAATATTTGTTTTATGACCAAAT
1 TAAATTAGTATTATTTTATT-TAAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * * * * *
26545636 AAAAGGTCCT-ATTAATTTGAAATTGATAATTATTCAAATAGTCATAATTATTTGAA-TTGGTTT
65 AAAAAGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTT-ATTC
* * *
26545699 GGTGAATAGAA-TTATTTTTCAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTTA-TT
128 GGTAAATA-AATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAA-TTAGTA
* * * * * *
26545762 TTATTTTA-TTCTGAATAAG-C-TAGTATGAATTAAAAAAATTATTTTATGACAAGACAAAAGGT
191 TTATTTTATTTC-AAATAAGTCTTA-TATGAACTGAAACAATTATTTTATGACAAAACAAAATGT
* * ** * * * * *
26545824 CATAACGATTTTAAATAGATAATTGTTCATGTAATCT-TAATTATTTAAACTAGTTCGATAAGCA
254 CATAACGATTTGAAATAGATAATTATTCAAATAGT-TATAACTATTTGAACTTGTTCGATAAACA
* * * * * *
26545888 AATTTATTTTTAAAATCTCTTAGTTATTAATTCTTGAAATTTTAT
318 AATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * * * *
26545933 TAGATTGGTATTATTTTATTTTAAATAAACTTATATTAATAGAAATAATTGTTTAATGACAAAAC
1 TAAATTAGTATTATTTTA-TTTAAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * * * * * ** *
26545998 AAAATGTTATAACAATTTGAAGTATACAATTGTTCAAATAGTCATAAATATTTAAACTGGTTCGA
65 AAAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTATTCGG
* * * * *
26546063 TAAACATAA-TTATTTTTTAAATCTCTTACTAATTAGTTTTTGAAAGATCAATAAATTAGTATTA
130 TAAATA-AATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTA
* * ** * * * * *
26546127 TTTTA-TTCTGAATAAG-CTTGTATGATA-AAAAATAACTATTATATGACCAAACAAAATGTAAT
194 TTTTATTTC-AAATAAGTCTTATATGA-ACTGAAACAATTATTTTATGACAAAACAAAATGTCAT
* * ** *
26546189 AATGATTTGAAATAGATAATTATTGAAATTA-CCATAATTATTTGAA-TTGATTC-AGTAAACAA
257 AACGATTTGAAATAGATAATTATTCAAA-TAGTTATAACTATTTGAACTTG-TTCGA-TAAACAA
* * * * *
26546251 ATTCAATTTTTAAATCATTGACTTTTTAATTTTATG-AATATTAA
319 ATTTATTTTTTAAATCTTTTACTTATTAATTTT-TGAAATATTAA
* * *** *
26546295 TAAATTAGTATTATTTTATTTCGAATAAACTTGGATGAATTGAAATAATTATTTTATGACAAAAC
1 TAAATTAGTATTATTTTATTT-AAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * * * * * *
26546360 AAAAAGTCAGAACGATTTTAAATAAACAATTGTTCAAATAATCATAACTA-TTAAATTTTGTTCG
65 AAAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAA-CTTATTCG
* * * *
26546424 GTAAACAAATTTATTTTTTTAAA-CTCTTGCTTATTAATTTTTAAAATATTAAGAAATTAGTATT
129 GTAAATAAATTTA-TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATT
** * * ** * * * *
26546488 ATTTTATTTTC-GGTAAG-CTTTTAAGAA-AAAAACAATTGTTTTATGTCAAAACAAAATATTAT
193 ATTTTA-TTTCAAATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAATGTCAT
* * * * * * *
26546550 AATGATTTTAAATAAATAATTATTTAAATAATTATAACTATTTGAACTTGTT-TAGTAAATAAAT
257 AACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGA-TAAACAAAT
* *
26546614 TTAATTTTTTCAAATCTTTTGCTTATTAATTTTTCG-AATGTTAA
321 TT-ATTTTTT-AAATCTTTTACTTATTAATTTTT-GAAATATTAA
* * * * * * *
26546658 TAAATTTGGATTATTTTATTTTGAATAAACTTGTAAGATATGAAACA-AA-TATTTTATGACTAA
1 TAAATTAGTATTATTTTA-TTTAAATAAACTTGTATGA-A-CAAAAATAATTATTTTATGACAAA
* * * * * * * ** * * * *
26546721 AT-AAAAGGCTAGAACAATCTAAAATATATAATTATTCTAATAGTTTTAATTGTTTGAA-TTGGT
63 ATAAAAAGTC-ATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTT-AT
* * * * *
26546784 TTGGTAAACACATTTATTTTTTAAA--TC--ACTTATTAATTTTTGAAATATTATTAAACTA-TA
126 TCGGTAAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTA
** * * * *
26546844 TTATTTT-TAACTGAATAAG-CTTTTAT-AATTAGAAACAAATTTTTTTATGACAAAACAAAGAT
191 TTATTTTATTTC-AAATAAGTCTTATATGAACT-GAAAC-AATTATTTTATGACAAAACAAA-AT
* * * *
26546906 -T-TTAACGATTTGAGATTA-ATAATTATTCAAATAGTCATAACTATTT-AAATTGGTTCGATAA
252 GTCATAACGATTTGA-AATAGATAATTATTCAAATAGTTATAACTATTTGAACTT-GTTCGATAA
* *
26546967 ACAGATTTATTTTTTAAATCTGTTACTTATTAATTTTTGAAATATTAA
315 ACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * ** * * *
26547015 TAACTTAGTATTATTTTATTTCGAATAGGCTTGTA-CAAGAAAAAATAATTGTTTTATGACAAAA
1 TAAATTAGTATTATTTTATTT-AAATAAACTTGTATGAA-CAAAAATAATTATTTTATGACAAAA
* * * * ** * * * *
26547079 TAAAATG-CTTAGCTATTTAAAATAGATAATGGTTCAAATGGCCATAATTATTCT-AACTGATTC
64 TAAAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATT-TAAACTTATTC
* * * * * * *
26547142 GGTAAACAGATCTATTTTTAAAATTTCTTATTTATTAA-TTTAGAAAATATTAATAAATTAGTAT
128 GGTAAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTG-AAATATTAATAAATTAGTAT
* * * * * * * * * *
26547206 TATTTTA-TCCAATCTAAGT-TTGTCTTAACTAAAACAATTATTTTATGATAAATCAAAAGGTTA
192 TATTTTATTTCAA-ATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAATGTCA
* * * * * * * * *
26547269 TAACGATTTTAAATAGACAATTATTAAAATAATAATAACTATTTAAACTTGTTTGGTAAACAGAT
256 TAACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGATAAACAAAT
* *
26547334 TTATTTTTTAAAAT-TTCTTTCTTATTAATTTTTCG-AATGTTAA
321 TTATTTTTT-AAATCTT-TTACTTATTAATTTTT-GAAATATTAA
* * * *** ** *
26547377 TAAATTAGTATTAATTTATTCTAAATAAATTTATATGAATTGAAATAATTATTTTATGATTAAAC
1 TAAATTAGTATTATTTTATT-TAAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * ** * ** *
26547442 GAATA-TCAGAA-TGATTTGAAATAGATAAATAATTTTAATAGTCTTAACCCTTTAAACTGATTC
65 AAAAAGTCATAACT-ATTTGAAATAGAT-AATTATTCAAATAGTCATAACTATTTAAACTTATTC
* * * *
26547505 GGTAAACAAATTTA-TTTTTAAGA--AC-T-CTTATTAATTTTTTAAATATTATTAAATTAGTAT
128 GGTAAATAAATTTATTTTTTAA-ATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTAT
* * * * * * * *
26547565 TATTTTAATTCGAATTAA-T-TTGTATGAA-TAAAAAAATTGTTTTATGACAGAAGAAAATGTCA
192 TATTTTATTTC-AAATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAATGTCA
* * * * * * * * * *
26547627 TAAAGACTTGAAATAGATAATTAACATTTTATATAATCT-CAACTGTTTGAACTAGTTCGACAAT
256 TAACGATTTGAAATAGATAATT---A-TTCAAATAGT-TATAACTATTTGAACTTGTTCGATAAA
* * * ** * ** *
26547691 TAAATTTA-TTTTTAATTTTTTTGGTTATTAAGTTTCAAAATATTAT
316 CAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * * * * *
26547737 TAAATTAGTTTTATTTTATTCTAAATAAAATGGTATGAAC-AGAATCAATTGTTTGATGATAAAA
1 TAAATTAGTATTATTTTATT-TAAATAAACTTGTATGAACAAAAAT-AATTATTTTATGACAAAA
* * * * * * *
26547801 TAAAAGGTTA-AAATGATTTAAAATAGATAATTATTCAAATAATCAAAACTATTTGAAA-TGATT
64 TAAAAAGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT-AAACTTATT
* * * * * * *
26547864 TGATAAGTAGATTTATTTTTTAAATCT-TATACTGATTAATTTTTTAAATATTAATATATTAGTA
127 CGGTAAATAAATTTATTTTTTAAATCTCT-TACTTATTAATTTTTGAAATATTAATAAATTAGTA
* * ** * * *
26547928 TTATTTTACTTTGAACA-AA--CTTATATTAACAAAAATAATTATTTTATGACAAAATAAAAAGT
191 TTATTTTA-TTTCAA-ATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAATGT
* * * * * * *
26547990 AATAATGATTTGAAATAGATAA-T-TGCAAATAGTTATAAATATTT-AAATTGGTTAGGTAAACA
254 CATAACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTT-GTTCGATAAACA
* * *
26548052 AAATTATTTTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAA
318 AATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* ** * ** * * *
26548097 TAAATTCA-TTTTATTTTATTCCGAATAATCTAATACGAATTGAAAAAT--TTGTTTTATGAC-A
1 TAAATT-AGTATTATTTTATT-TAAATAAACTTGTATGAA--CAAAAATAATTATTTTATGACAA
* **
26548158 AA-AAAAAGTCATAA-TAATTTGAAATAGATAATTATTCATATAGT-ATTAACTATTTAAACTGG
62 AATAAAAAGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCA-TAACTATTTAAACTTA
* * * * *
26548220 TTCAGTAAATAAATTTATTTTTTAAATCTCTTAATTATTAATTTTTGAAATATTATTAGATTAAT
125 TTCGGTAAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGT
* ** * * * * * * * * *
26548285 ATTATTCTATTTTGAATAA-ACTTTTAT-AAATAAAAATAATTATTTTATGATAGAATAAAAGGT
190 ATTATTTTATTTCAAATAAGTCTTATATGAACT-GAAACAATTATTTTATGACAAAACAAAATGT
* ** * * * * *
26548348 TATAAAAATTTGAAGTATG-CAATTATTCAAATAGTTATAATTATTTGAACTGGTTCGGTAAACA
254 CATAACGATTTGAAATA-GATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGATAAACA
* * *
26548412 GATTTATTTTTTAAATTTTTTACTTATTAATTTTTGAAAGATTAA
318 AATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* ** * * *
26548457 TAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGATTAAAAACAATTATTATATGACCAAA-
1 TAAATTAGTATTATTTTATTT-AAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * * * * * * *
26548521 CAAAAGACAATAACGATTTGAAATAGATAAATATTGAAATGGCCATAATTATTTGAA-TTGATTC
65 AAAAAGTC-ATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTT-ATTC
* * * ** *
26548585 GGTAAATAGATTTACTTTGTAAATGACTTACTTATTAATTTTTGAAATATTAATAAATTAATATT
128 GGTAAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATT
* * * * * * * * * *
26548650 ATTTTATTTCGAATAA-ACTTGTATGAATTGATAGAATTGTTTTATGACAAAATAAAAGGTAATA
193 ATTTTATTTCAAATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAATGTCATA
* * * * * *
26548714 ACGATTTTAAATAGACAATTGTTTAAATAGTCATAACTATTTGAATTTGTT-GATTAAACAAATT
258 ACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGA-TAAACAAATT
* *
26548778 TATTTTTTTTAAA-CTCTTACTTATTAATTTTGGAAATATTAA
322 TA--TTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* ** * * ** ** *
26548820 GAAATTAGTATTATTTTATTTTGGATAAATTTTTATGAACTGAAGCAATTATTTTATGTCAAAAT
1 TAAATTAGTATTATTTTA-TTTAAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* * * *
26548885 AAAAGGTCATAA-TGATTTTAAATA-ATTAATTATTCAAATAGTCATAACTATTTGAACTTGTTC
65 AAAAAGTCATAACT-ATTTGAAATAGA-TAATTATTCAAATAGTCATAACTATTTAAACTTATTC
* * * * * * *
26548948 GGTAAATGAATTTATTTTTTCAAATATTTTGCTTATTAATTTTTTG-AATGTTAATAAATTTGAA
128 GGTAAATAAATTTATTTTTT-AAATCTCTTACTTATTAA-TTTTTGAAATATTAATAAATTAGTA
* * * * * * * * * *
26549012 TTATTATA-TTCTGAATAA-ACTTGTAAGATA-TAAAACAAGTATTTTATAACTAAACAAAAAGT
191 TTATTTTATTTC-AAATAAGTCTTATATGA-ACTGAAACAATTATTTTATGACAAAACAAAATGT
* * * * *
26549074 CAGAATGATTTGAAATAGATAATTATTCGAATAGTTTTAACTATTTGAA-TTGGTTCGGTAAACA
254 CATAACGATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTT-GTTCGATAAACA
* * * * *
26549138 CATTTATTTTTTAAATATCTTAGTTATTAATTTTTGAAATATTAT
318 AATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* ** * * * * * *
26549183 TAAATTAGTATTATTTTTAATCGAATAAGCTTGTATTATCAAAAA-ATTTTTTTTATGACAAAAC
1 TAAATTAGTATTA-TTTTATTTAAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAAT
* ** * * * * * * * *
26549247 AAAGA-TTTTAACGATGTGATATTGATAATTGTTCAAATAGTCTTAACTATTTTAAACTAATTTG
65 AAAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTA-TTTAAACTTATTCG
*
26549311 GTAAACAAATTTATTTTTTAAAT
129 GTAAATAAATTTATTTTTTAAAT
26549334 GATTTAAAAT
Statistics
Matches: 6340, Mismatches: 1383, Indels: 702
0.75 0.16 0.08
Matches are distributed among these distances:
338 1 0.00
339 59 0.01
340 64 0.01
341 2 0.00
342 3 0.00
344 3 0.00
345 8 0.00
346 50 0.01
347 63 0.01
348 8 0.00
349 6 0.00
350 71 0.01
351 40 0.01
352 9 0.00
355 59 0.01
356 134 0.02
357 483 0.08
358 488 0.08
359 458 0.07
360 588 0.09
361 1000 0.16
362 1326 0.21
363 814 0.13
364 256 0.04
365 58 0.01
367 2 0.00
368 7 0.00
370 2 0.00
371 41 0.01
372 95 0.01
373 76 0.01
374 62 0.01
375 4 0.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (362 bp):
TAAATTAGTATTATTTTATTTAAATAAACTTGTATGAACAAAAATAATTATTTTATGACAAAATA
AAAAGTCATAACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTTATTCGGT
AAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATT
TTATTTCAAATAAGTCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAATGTCATAACG
ATTTGAAATAGATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGATAAACAAATTTATT
TTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
Found at i:26543767 original size:17 final size:17
Alignment explanation
Indices: 26543727--26543777 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
26543717 ACAAACACAT
*
26543727 TTATTTTTA-AATCCTTA
1 TTATTTTTAGAAT-ATTA
26543744 TTAATTTTTAGAATATTA
1 TT-ATTTTTAGAATATTA
26543762 TTA-TTTTAGCAATATT
1 TTATTTTTAG-AATATT
26543778 TTACTTCGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 6 0.20
17 9 0.30
18 12 0.40
19 3 0.10
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (17 bp):
TTATTTTTAGAATATTA
Found at i:26544461 original size:23 final size:23
Alignment explanation
Indices: 26544435--26544478 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
26544425 TTAGAAAATA
*
26544435 TATTTATTTTTAAAATTTTTATT
1 TATTAATTTTTAAAATTTTTATT
26544458 TATTAATTTTTAAAATTTTTA
1 TATTAATTTTTAAAATTTTTA
26544479 AAAATTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (23 bp):
TATTAATTTTTAAAATTTTTATT
Found at i:26546834 original size:18 final size:20
Alignment explanation
Indices: 26546799--26546837 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26546789 AAACACATTT
*
26546799 ATTTTTTAAATCACTTATTA
1 ATTTTTGAAATCACTTATTA
26546819 ATTTTTGAAAT-A-TTATTA
1 ATTTTTGAAATCACTTATTA
26546837 A
1 A
26546838 ACTATATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 10 0.56
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (20 bp):
ATTTTTGAAATCACTTATTA
Found at i:26547649 original size:719 final size:721
Alignment explanation
Indices: 26540931--26549333 Score: 4885
Period size: 720 Copynumber: 11.7 Consensus size: 721
26540921 CAGAATAGGC
** * * * * * *
26540931 TTATATGAAAAGAAATAATTGTTCTATGACAAAATAAAGA-TCATAATAATTTGATATAGATAAT
1 TTATATGAATTGAAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAAT
* * * * * * * * * *
26540995 TGTTTAAATAGTCATAACTATATAAACTGATTTGATAAATAGATTTAGTTTTTAAATCTCTTATT
66 TATTCAAATAGTCTTAACTATTTAAACTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTTATT
* * * ** * *
26541060 AATTTTTAAAATATTAATAAATAAGTATTATTTT-ATTTTGAAT-AATTTTATATGAACAAAAAT
131 AATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGAATAAAAAT
* * * * * * * * * *
26541123 AATTGTTTTATGATAAAATAAAATATCATAAGGATTTGAAACAGATAACTGTTCAAAT-G-GATT
196 AATTATTTTATGACAGAACAAAATGTCATAAAGATTTGAAATAGATAATTATTCAAATAGTCA-T
* * * * * * *
26541186 GGAGTATTTAAACTT-ATGT-GGTAAACATATTTATTTTTTAAATCTTCTA-TCTATTAATTTTT
260 -AACTATTTGAA-TTGGT-TCGATAAACAAATTTATTTTTTAAATCTTTTACT-TATTAATTTTT
* * * * ** * * *
26541248 AAAATATTAATAAATTAGTATTATTTTATTCCGAATAAACTTGT--ATGAATTGAACTAAATGTT
321 GAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTACAAGAA-CAAAATAATTATT
* * * * * * *
26541311 TTATGATAAAACAAAAGACCATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTT
385 TTATGACAAAATAAAAG-TCTTAACTATTTAAAATAGATAATTATTCAAATAGTCATAACTATTT
* *
26541376 -AAGCTT-ATTCAGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
449 GAA--TTGATTCGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAA-TTTTGAAATATTAA
* * * *** *
26541439 TAAATTAGTATTATCTTATTTCGAA-TAAACTTATAT-AAATAGAAACAATCGGTTTATGACAAA
511 TAAATTAGTATTATTTTA-TTCGAACTAAACTTGTATGAACTA-AAACAATTATTTTATGATAAA
* * * * * * * *
26541502 ACAAAATGTCATAACTATTTGAAATAAATAATTGTTCGAATAATTATAACTATTTAAA-TGTGTT
574 TCAAAAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTAAACT-TGTT
** * * * * * * *
26541566 CAGAAAACATATTTATTTTTAAAAT-TTTTGCTTAATAATTTTTGGAATATTAATAAATTTA-TA
638 TGGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAA-TTAGTA
*** **
26541629 TTATTTTATTCAAAATAAGC
702 TTATTTTATTTTGAATAAAT
* **** * *
26541649 TTGTATGAGCAAAAAAAATTATTTTATGACAAAA-AAAAATGTCATAACGATTTGAAATAGATAA
1 TTATATGAATTGAAATAATTATTTTATGACAAAACAAAAA-GTCATAACAATTTGAAATAGATAA
* * * * * *
26541713 TTGTTCAAATAATCATAACTATTTAAACTTGTTTGGTAAATAAATTTATTTTTTTAAATCTCTTA
65 TTATTCAAATAGTCTTAACTATTTAAACTGGTTCGGTAAACAAATTTA-TTTTTTAAATCTCTTA
** * * ** **
26541778 CTTGTTAATTTTTGAAATATTAATAAATTAACATTATTTTATTTC-AAATAAGTC-TAAATGAAC
129 ----TTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGAA-
* * * * * * * * *
26541841 T-GATACAATTGTTTTATAATAAAACAGAAA-GTCATAACGATTTGAAATAGATAATTATTAAAA
189 TAAAAATAATTATTTTATGACAGAACA-AAATGTCATAAAGATTTGAAATAGATAATTATTCAAA
* * * * *
26541904 TAGTTATAACTATTTGAACTT-ATTCGATAAACATATTTATTTTTAAAATTTTTTACTTATTAAT
253 TAGTCATAACTATTTGAA-TTGGTTCGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAAT
* * * * *
26541968 TATCGAAATATTAATAAATTAATATTATTTTAATTT-AAATAAGCTTGTA-TA-AACAAAAATAA
317 TTTTGAAATATTAATAAATTAGTATTATTTT-ATTTCGAATAAGCTTGTACAAGAAC-AAAATAA
*
26542030 TTATTTTATGACAAAATAAAAAGT-TATAACTATTTAAAATAAATAATTATTCAAATAGTCATAA
380 TTATTTTATGACAAAAT-AAAAGTCT-TAACTATTTAAAATAGATAATTATTCAAATAGTCATAA
* * * * * *
26542094 TTATTTAAACTT-ATTCAGTAAACAAATTTATTTTTTAAATCGT-TTAATTATTAATCGTTTG-G
443 CTATTTGAA-TTGATTCGGTAAACAGATTTATTTTTTAAATC-TCTTACTTATTAAT--TTTGAA
* * * * * *
26542156 TTTTTAATAAATTTA-TATTATTTTATTTGAAATAAGCTTGTATGAA-GAAGAA-AATTATTTTA
504 ATATTAATAAA-TTAGTATTATTTTATTCGAACTAAACTTGTATGAACTAA-AACAATTATTTTA
* * * * * ** *
26542218 TGAAAAAACAAAATGTTATAATGATTTGAAATAGATAATTGTTCAAATAGCCATAACTATTTGAA
567 TGATAAATCAAAAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTAAA
* * * * *
26542283 CTTATTTGGTAAATAGATTCATTTTTTAAATCTCTTATTTATTAATTTTTGAAATATTAATAAAT
632 CTTGTTTGGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAAT
* * * * * *
26542348 TTGAATTATGTTATTTGGAAGAAGT
697 TAGTATTATTTTATTTTGAATAAAT
* * * * * * * * ** * *
26542373 TTGTACGAACAT-AAACAATTATTTTTTGATAAAACAAAAGGTTATAATGATTTGAAACAGACAA
1 TTATATGAA-TTGAAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAA
* ** * * * *
26542437 CTGTA-T--AATCAGT-TGTAACTCTTTGTACT-GATCAAGCT-AACATATTCATTTTTTAAATC
65 -T-TATTCAAAT-AGTCT-TAACTATTTAAACTGGTTC--GGTAAACAAATTTATTTTTTAAATC
* * * * *
26542496 AATTACTTATTAAATTTTAAAATATTAATAAATTAGCATTACTTT-ATTCTGAATACGA-C-TGT
124 ---T-CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATA-AACCTTGT
* * * * * * * *
26542558 ATGAACATAAACAATTGTTTTATGAC-GAAACAAATTGTCATAATGATTTGAAATAAATAATTGT
184 ATGAATAAAAATAATTATTTTATGACAG-AACAAAATGTCATAAAGATTTGAAATAGATAATTAT
* * * * *
26542622 TCAAATAGTAATAACTAATTGAATTGGTT-TAGTAAACAGATTTATTTTTT-AA--TTCT-CTTA
248 TCAAATAGTCATAACTATTTGAATTGGTTCGA-TAAACAAATTTATTTTTTAAATCTTTTACTTA
* * ** * * ** *
26542682 TTAATTTTTAAAATATTAATAAATTAATATTATTTTATACCAAATAAACTTGTTTGAACAA-AAA
312 TTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTG-TACAAGAACAAA
* * * ** * * * * *
26542746 ATATTTGTTTTATGACAAAACAAAATGTAATAACGATTTGAAATAAATAATTTTTCAAATAGTGA
376 ATAATTATTTTATGACAAAATAAAA-GTCTTAACTATTTAAAATAGATAATTATTCAAATAGTCA
* * * * * * * **
26542811 TAATTATTTGAACTGGTTCGATAAATAAAATTATTTTTTAAATCTCTTACCGATTAATTTTTGAA
440 TAACTATTTGAATTGATTCGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAA-TTTTGAA
* * * *
26542876 ATATTAATAAATTTA-TATTATTTTATTTTGAA-T-AAGTTAGAAAGAACTGAAAA-AATTATTT
504 ATATTAATAAA-TTAGTATTATTTTA-TTCGAACTAAACTT-GTATGAACT-AAAACAATTATTT
* * ** * * * ** *
26542937 TATAACAAAAT-AAAAGGACATAAC-AGTTT-GA-A-ATAATTGTTCATATAGCCTTAACTATTT
565 TATGA-TAAATCAAAAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTT
* * ** * * * *
26542997 GAA-TTGGTTCGACAAATAAATTTATTTTTTAAATATCTTAGTTATTAATTTTT-AGAATATTAT
629 AAACTT-GTTTGGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGA-AATATTAA
* * *
26543060 TACATTAGTATTACTTTATTTCGAATAAAT
692 TAAATTAGTATTATTTTATTTTGAATAAAT
* * *** * * * * *
26543090 TTGTATTAACAAAAATAATTATTTTATGACAGAACAAAAGGTTATAACAATTTAAAATATATAAT
1 TTATATGAATTGAAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAAT
* * * * ** *
26543155 TATTCAAATAGT-TATAACTATTTGAATTAGTTCTGTAAGTAGATTTATTTTTTAAATCTCTTAC
66 TATTCAAATAGTCT-TAACTATTTAAACTGGTTCGGTAAACAAATTTATTTTTTAAA--TC-T-C
* * ** ** *
26543219 TTATTTAATTTTTAAAATATTAATAAGTTAGTATTATTTT-ATTCCAAAT-AGGCTTATATG-AT
126 TTA-TTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGAAT
* * * * * *
26543281 GAAAAACAATAATTTTTTGACAAAACAAAAAT-TCATAACA-ATTTGAAATAAATAATTATTTAA
190 -AAAAATAATTATTTTATGACAGAAC-AAAATGTCATAA-AGATTTGAAATAGATAATTATTCAA
** * * ** *** * * * * * *
26543344 ATAACCATAATTATTTGAACTAATTCGATAAATTGATTTATGTTTTAAATATCTAACTTATCAAA
252 ATAGTCATAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAAT
* * * ** * ** *
26543409 TTTTAAAATATTAATAAAGTAATATTATTTTATTTC-AGATAAG-TT-TTTATGAATTGAAACAA
317 TTTTGAAATATTAATAAATTAGTATTATTTTATTTCGA-ATAAGCTTGTACAAGAA-CAAAATAA
* * * * * *
26543471 TTGTTTTATGTCAAAATAAAAGGTCATAACGATTTTAAATAGATAATTGTTCAAATAGTCATAAC
380 TTATTTTATGACAAAATAAAA-GTCTTAACTATTTAAAATAGATAATTATTCAAATAGTCATAAC
* * * *
26543536 TATTTGAACTTG-TTCGATAAATAAATTTA---TTT---T-T-TTA---ATT--TTTTG-AATGT
444 TATTTGAA-TTGATTCGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTGAAATAT
* * * * *
26543586 TAATAAATTAGTATTATTTTATTTC-AAATAAGCATGTATTAACTGAAACAATTATTTTATGACT
508 TAATAAATTAGTATTATTTTA-TTCGAACTAAACTTGTATGAACTAAAACAATTATTTTATGA-T
* * * * * * ** * * *
26543650 AAA-CAAAAAGTTAGAACGA-TTCAAAAAAATAATTGTTCTAATAATTTTAACTATTTGATCTAG
571 AAATCAAAAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTAAACTTG
**** * * **
26543713 TTCAACAAACACATTTA-TTTTTAAA--TC---CTTATTAATTTTT-AGAATATTATTATTTTAG
636 TTTGGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGA-AATATTAATAAATTAG
* * * * * *
26543771 CAATATTTTACTTCGAATTAAC
700 TATTATTTTATTTTGAATAAAT
* * * * * *
26543793 TTGTATGAATTGAAATAAATATTTTAGGACAAAACAAAGA-T-ATTAACTATTTGAGATAGATAA
1 TTATATGAATTGAAATAATTATTTTATGACAAAACAAAAAGTCA-TAACAATTTGAAATAGATAA
* * * ** * * * * * *
26543856 TTGTTCAAATAGT-TATAATTATTTGAACTGGTTTTGTAAAGATATTTAGTTTTTAAGTGTATTA
65 TTATTCAAATAGTCT-TAACTATTTAAACTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTTA
* ** * * * ** *
26543920 TTAATCTTCAAAATAGTAATAAATTAGTATTATTTT-ATTTTAAAT-AATTTTGTATGAATAGAA
129 TTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGAATAAAA
** * ** * * * * * *
26543983 GCAATAATTTTACAACAAAATAAAATATCATAACA-ATTTGAAATAAATAA-TAGTTCAAATGGA
194 ATAATTATTTTATGACAGAACAAAATGTCATAA-AGATTTGAAATAGATAATTA-TTCAAATAGT
* * * * * *
26544046 CATGACTATTTGAATTTGTT-TAGTAAACAGATTAATTTTTAAAAT-TTTTAACTTATTAATTTT
257 CATAACTATTTGAATTGGTTCGA-TAAACAAATTTATTTTTTAAATCTTTT-ACTTATTAATTTT
* ** * * *
26544109 T-AGAATATTAATAAATTAGTATTA-TTTATTTCAAATAAATTTGT--ATGAATAAAAATAATTT
320 TGA-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTACAAGAA-CAAAATAATTA
* * * * * *
26544170 TTTTATGACAAAACAAAAAAT-TATAA-TGATTTGAAATAAATAATTATTTAAATGGTCATAACT
383 TTTTATGACAAAA-TAAAAGTCT-TAACT-ATTTAAAATAGATAATTATTCAAATAGTCATAACT
* * * *
26544233 ATTTAAATT--TTCTTGGTAAATAGATTTACTTTTTT-AATCTTTTACTTATTAATTTTAAAATA
445 ATTTGAATTGATTC--GGTAAACAGATTTA-TTTTTTAAATCTCTTACTTATTAATTTTGAAATA
* * * * * * * ** *
26544295 TTAATAAATTAATATTATTTTATTCTAAATAAGCTTCTTTGAAC-AGAACAAATTGGTTTATGAC
507 TTAATAAATTAGTATTATTTTATTCGAACTAAACTTGTATGAACTAAAAC-AATTATTTTATGAT
* * * * * * * *
26544359 AAAACAATTA-GTTATAACAATTTAAAATAAATAATTATGCAAATAATCATAACTATTTAAACGT
571 AAATCAA-AAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTAAACTT
** * * * * * * * * *
26544423 ACTTAGAAAATATATTTATTTTTAAAAT-TTTTATTTATTAATTTTTAAAATTTTTAA-AAATTT
635 GTTTGGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAA-TATTAATAAA-TT
**
26544486 A-TATTATTTTA-TTTGAAATAAGC
698 AGTATTATTTTATTTTG-AATAAAT
** *** * * * * * *
26544509 TTGCATGAGCAG-AATCAATTGTTTTATAACAAAATAAAAATGTCGTAATATTTTGAAATAGATA
1 TTATATGAATTGAAAT-AATTATTTTATGACAAAACAAAAA-GTCATAACAATTTGAAATAGATA
* * * * * * * * * * *
26544573 ATTTTTCATATAGTCATAACTATTTGAACTTGTTTGATAAATAGATTCATTTTTTTTAATTCTCT
64 ATTATTCAAATAGTCTTAACTATTTAAACTGGTTCGGTAAACAAATT--TATTTTTTAAATCTCT
* * * * *
26544638 TACTTTTTAATTTTTGAAATATGAATAAATTAGTATTA-TTTATTTC-AAAT-AAGCTTATATGA
127 TA----TTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGA
* * * * * * * * *
26544700 GCT-GAAACAATTGTTTTATTACAAAAAAAGGGTAATAATGATTTGAAATGATTTGAAATAGATA
188 -ATAAAAATAATTATTTTATGACAGAACAA----AAT-GTCA--T-AAA-GATTTGAAATAGATA
* * * * *
26544764 ATTATTCAAATAGTAATGACTATTTGAACTT-GTTC-AGTAAATATATTTATTTTTTTAAATATT
243 ATTATTCAAATAGTCATAACTATTTGAA-TTGGTTCGA-TAAACAAATTTA-TTTTTTAAATCTT
* ** * * * *
26544827 TTACTTATTAATTATCAAAAAATTAATAAATTAATATTATTTTAATCCGAATAAG-TGTGTAC--
305 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCT-TGTACAA
* * * * * *
26544889 GAACAGAAACAATTATTTTATGATAAAATAAAAAGTCATAACAATTTAAAATAAATAATTATTTA
369 GAACA-AAATAATTATTTTATGACAAAAT-AAAAGTCTTAACTATTTAAAATAGATAATTATTCA
* * * * * * * * *
26544954 AATAGTCATAACGAGTTAAACT-AGTTTGATAAACAGATTTATTTTTTTAATCTTTTATTTATTA
432 AATAGTCATAACTATTTGAATTGA-TTCGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTA
* * *
26545018 ATTGTCT-TAATATTAATAAATTTA-TATTATTTTATTTGAAATAAACTTGTATGAACCTAAAA-
496 ATT-T-TGAAATATTAATAAA-TTAGTATTATTTTATTCGAACTAAACTTGTATGAA-CTAAAAC
* * *** * *
26545080 AATTATTTTATAATAAAACAAAAGGTTATAGTAATTTCAAATAGATAATTGTTCAAATAGTCATA
557 AATTATTTTATGATAAATCAAAAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATA
* * * *
26545145 ATTATTTAAA-TCTGTTTGGTAAACAGATTCATTTTTTAAATCTCTTAATTATTAATTTTTTG-A
622 ACTATTTAAACT-TGTTTGGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAA-TTTTTGAA
* * *
26545208 ATATTAATAACTTAGTATTATTTTATTTCGAATAAGT
685 ATATTAATAAATTAGTATTATTTTATTTTGAATAAAT
* *
26545245 TTATATGAACTGAAATAATT-TTTTATGACAAAACAAAAAGTCATAACGATTTGAAATAGATAAT
1 TTATATGAATTGAAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAAT
* * * * * * * * * *
26545309 TATTTAAATAGTC-AAGATTATTTGATCTAGTTCGATAAATATATTTATTTTTTAAATTTTTTAC
66 TATTCAAATAGTCTTA-ACTATTTAAACTGGTTCGGTAAACAAATTTATTTTTTAAA---TCT-C
** * * *
26545373 TTATTAATTGGTGAAATATTAATAAATTAGTATTATTTTAA-TCTAAATAAA-CTTATATGAACA
126 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGAATA
* * * * ** * * * * *
26545436 AAAACT-ATTGTTTTATAATAGAATAAAAAATCGTAACGATTTAAAATAAATAATTACTT-AAGT
191 AAAA-TAATTATTTTATGACAGAACAAAATGTCATAAAGATTTGAAATAGATAATTA-TTCAAAT
* * * *
26545499 AGTCATAACTATTTGAACTAGTTTGATAAACATATTTATTTTTTAAATC---T-CTTATTAATTT
254 AGTCATAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTT
* * * * * * * * * *
26545560 TTAAAATATTAATAGATTAGTAATATTTTATTCCAAACAAACTTATATC---AACAAAATATTTG
319 TTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTA-CAAGAACAAAATAATTA
* * * * * *
26545622 TTTTATGACCAAATAAAAGGTCCT-ATTAATTTGAAATTGATAATTATTCAAATAGTCATAATTA
383 TTTTATGACAAAATAAAA-GTCTTAACT-ATTTAAAATAGATAATTATTCAAATAGTCATAACTA
* * * * * *
26545686 TTTGAATTGGTTTGGTGAATAGAATTATTTTTCAAATCTCTTACTTATTAATTTTTGAAATATTA
446 TTTGAATTGATTCGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAA-TTTTGAAATATTA
* * * * * *
26545751 ATAAATTTA-TTTTATTTTATTCTGAA-TAAGCTAGTATGAATTAAAAAAATTATTTTATGACAA
510 ATAAA-TTAGTATTATTTTATTC-GAACTAAACTTGTATGAACTAAAACAATTATTTTATGATAA
* ** * * *
26545814 GA-CAAAAGGTCATAACGATTTTAAATAGATAATTGTTCATGTAATCTTAATTATTTAAACTAGT
573 -ATCAAAAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTAAACTTGT
* * * * * * * * * *
26545878 TCGATAAGCAAATTTATTTTTAAAATCTCTTAGTTATTAATTCTTGAAATTTTATTAGATTGGTA
637 TTGGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTA
* *
26545943 TTATTTTATTTTAAATAAAC
702 TTATTTTATTTTGAATAAAT
* * * * * * * * *
26545963 TTATATTAATAGAAATAATTGTTTAATGACAAAACAAAATGTTATAACAATTTGAAGTATACAAT
1 TTATATGAATTGAAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAAT
* * * *
26546028 TGTTCAAATAGTCATAAATATTTAAACTGGTTCGATAAACATAA-TTATTTTTTAAATCTCTTAC
66 TATTCAAATAGTCTTAACTATTTAAACTGGTTCGGTAAACA-AATTTATTTTTTAAATCTC-T--
* * * *
26546092 TAATTAGTTTTTGAAAGATCAATAAATTAGTATTATTTT-ATTCTGAAT-AAGCTTGTATG-ATA
127 T-ATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGAAT-
* * * * *
26546154 AAAAATAACTATTATATGACCA-AACAAAATGTAATAATGATTTGAAATAGATAATTATTGAAAT
190 AAAAATAATTATTTTATGA-CAGAACAAAATGTCATAAAGATTTGAAATAGATAATTATTCAAA-
* * * * * * * *
26546218 TA-CCATAATTATTTGAATTGATTC-AGTAAACAAATTCAATTTTTAAATCATTGACTTTTTAAT
253 TAGTCATAACTATTTGAATTGGTTCGA-TAAACAAATTTATTTTTTAAATCTTTTACTTATTAAT
* * * **
26546281 TTTATG-AATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTG--GATGAATTGAAATAA
317 TTT-TGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTACAAGAA-CAAAATAA
* ** * * * * * *
26546343 TTATTTTATGACAAAACAAAAAGTCAGAACGATTTTAAATAAACAATTGTTCAAATAATCATAAC
380 TTATTTTATGACAAAA-TAAAAGTCTTAACTATTTAAAATAGATAATTATTCAAATAGTCATAAC
* * * *
26546408 TA-TTAAATTTTG-TTCGGTAAACAAATTTATTTTTTTAAA-CTCTTGCTTATTAATTTTTAAAA
444 TATTTGAA--TTGATTCGGTAAACAGATTTA-TTTTTTAAATCTCTTACTTATTAA-TTTTGAAA
* * * * * * *
26546470 TATTAAGAAATTAGTATTATTTTATTTTCG--GTAAGCTTTTAAGAA-AAAAACAATTGTTTTAT
505 TATTAATAAATTAGTATTATTTTA--TTCGAACTAAACTTGTATGAACTAAAACAATTATTTTAT
* ** * * * * * *
26546532 G-TCAAAACAAAATATTATAATGATTTTAAATAAATAATTATTTAAATAATTATAACTATTTGAA
568 GAT-AAATCAAAAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTAAA
* * * * *
26546596 CTTGTTTAGTAAATAAATTTAATTTTTTCAAATCTTTTGCTTATTAATTTTTCG-AATGTTAATA
632 CTTGTTTGGTAAACAAATTT-ATTTTTT-AAATCTCTTACTTATTAATTTTT-GAAATATTAATA
* * *
26546660 AATTTGGATTATTTTATTTTGAATAAAC
694 AATTAGTATTATTTTATTTTGAATAAAT
* * * * * * * * * * *
26546688 TTGTAAG-ATATGAAACAAATATTTTATGACTAAA-TAAAAGGCTAGAACAATCTAAAATATATA
1 TTATATGAAT-TGAAATAATTATTTTATGACAAAACAAAAAGTC-ATAACAATTTGAAATAGATA
* * * * * * * * *
26546751 ATTATTCTAATAGTTTTAATTGTTTGAATTGGTTTGGTAAACACATTTATTTTTTAAATCACTTA
64 ATTATTCAAATAGTCTTAACTATTTAAACTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTTA
* * * *
26546816 TTAATTTTTGAAATATTATTAAACTA-TATTATTTTTAA--CTGAAT-AAGCTTTTAT-AATTAG
129 TTAATTTTTGAAATATTAATAAATTAGTATTA-TTTTAATTCTGAATAAACCTTGTATGAA-TA-
* * * * *
26546876 AAACA-AATTTTTTTATGACAAAACAAAGAT-T-TTAACGATTTGAGATTA-ATAATTATTCAAA
191 AAA-ATAATTATTTTATGACAGAACAAA-ATGTCATAAAGATTTGA-AATAGATAATTATTCAAA
* * *
26546937 TAGTCATAACTATTTAAATTGGTTCGATAAACAGATTTATTTTTTAAATCTGTTACTTATTAATT
253 TAGTCATAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATT
* * *
26547002 TTTGAAATATTAATAACTTAGTATTATTTTATTTCGAATAGGCTTGTACAAGAA-AAAATAATTG
318 TTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTACAAGAACAAAATAATTA
* ** * * *
26547066 TTTTATGACAAAATAAAA-TGCTTAGCTATTTAAAATAGATAATGGTTCAAATGGCCATAATTAT
383 TTTTATGACAAAATAAAAGT-CTTAACTATTTAAAATAGATAATTATTCAAATAGTCATAACTAT
* * * * * *
26547130 TCT-AACTGATTCGGTAAACAGATCTATTTTTAAAATTTCTTATTTATTAATTTAGAAAATATTA
447 T-TGAATTGATTCGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTG-AAATATTA
* ** * *
26547194 ATAAATTAGTATTATTTTA-TCCAATCTAAGTTTGTCTTAACTAAAACAATTATTTTATGATAAA
510 ATAAATTAGTATTATTTTATTCGAA-CTAAACTTGTATGAACTAAAACAATTATTTTATGATAAA
* * * *
26547258 TCAAAAGGTTATAACGATTTTAAATAGACAATTATTAAAATAATAATAACTATTTAAACTTGTTT
574 TCAAAAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTAAACTTGTTT
* * * *
26547323 GGTAAACAGATTTATTTTTTAAAATTTCTTTCTTATTAATTTTTCG-AATGTTAATAAATTAGTA
639 GGTAAACAAATTTATTTTTT-AAATCTCTTACTTATTAATTTTT-GAAATATTAATAAATTAGTA
* * *
26547387 TTAATTTATTCTAAATAAAT
702 TTATTTTATTTTGAATAAAT
** * * * **
26547407 TTATATGAATTGAAATAATTATTTTATGATTAAACGAATA-TCAGAATGATTTGAAATAGATAAA
1 TTATATGAATTGAAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGAT-AA
* ** ** * *
26547471 TAATTTTAATAGTCTTAACCCTTTAAACTGATTCGGTAAACAAATTTA-TTTTTAAGAACTCTTA
65 TTATTCAAATAGTCTTAACTATTTAAACTGGTTCGGTAAACAAATTTATTTTTTAA-ATCTCTTA
* * * *
26547535 TTAATTTTTTAAATATTATTAAATTAGTATTATTTTAATTC-GAATTAA-TTTGTATGAATAAAA
129 TTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGAATAAAA
* * * * *
26547598 A-AATTGTTTTATGACAGAAGAAAATGTCATAAAGACTTGAAATAGATAATTAACATTTTATATA
194 ATAATTATTTTATGACAGAACAAAATGTCATAAAGATTTGAAATAGATAATT---A-TTCAAATA
* * * * * ** * * ** *
26547662 ATC-TCAACTGTTTGAACTAGTTCGACAATTAAATTTA-TTTTTAATTTTTTTGGTTATTAAGTT
255 GTCAT-AACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTT
** * * * ** * * *
26547725 TCAAAATATTATTAAATTAGTTTTATTTTA-TTCTAAATAAAATGGT--ATGAACAGAATCAATT
319 TTGAAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTACAAGAACAAAAT-AATT
* * * * * * *
26547787 GTTTGATGATAAAATAAAAGGT-TAAAATGATTTAAAATAGATAATTATTCAAATAATCAAAACT
382 ATTTTATGACAAAATAAAA-GTCTTAACT-ATTTAAAATAGATAATTATTCAAATAGTCATAACT
* * * ** * *
26547851 ATTTGAAATGATTTGATAAGTAGATTTATTTTTTAAATCT-TATACTGATTAATTTTTTAAATAT
445 ATTTGAATTGATTCGGTAAACAGATTTATTTTTTAAATCTCT-TACTTATTAA-TTTTGAAATAT
* * * * * * *
26547915 TAATATATTAGTATTATTTTACTTTGAAC-AAACTTATATTAACAAAAATAATTATTTTATGACA
508 TAATAAATTAGTATTATTTTA-TTCGAACTAAACTTGTATGAACTAAAACAATTATTTTATGA-T
* * * * * * *
26547979 AAAT-AAAAAGTAATAATGATTTGAAATAGATAATTG--CAAATAGTTATAAATATTTAAA-TTG
571 AAATCAAAAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTAAACTT-
* * *
26548040 GTTAGGTAAACAAAATTATTTTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAATAAATTCA
635 GTTTGGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATT-A
* **
26548105 -TTTTATTTTATTCCGAAT-AAT
699 GTATTATTTTATTTTGAATAAAT
* * * *
26548126 CTAATACGAATTGAAA-AATTTGTTTTATGAC-AAA-AAAAAGTCATAATAATTTGAAATAGATA
1 -TTATATGAATTGAAATAA-TTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATA
* * * *
26548188 ATTATTCATATAGTATTAACTATTTAAACTGGTTCAGTAAATAAATTTATTTTTTAAATCTCTTA
64 ATTATTCAAATAGTCTTAACTATTTAAACTGGTTCGGTAAACAAATTTATTTTTTAAATCTC---
* * * * * * *
26548253 ATTATTAATTTTTGAAATATTATTAGATTAATATTATTCT-ATTTTGAATAAA-CTTTTATAAAT
126 -TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGAAT
* * * * * * *
26548316 AAAAATAATTATTTTATGATAGAATAAAAGGTTATAAAAATTTGAAGTATG-CAATTATTCAAAT
190 AAAAATAATTATTTTATGACAGAACAAAATGTCATAAAGATTTGAAATA-GATAATTATTCAAAT
* * * * * *
26548380 AGTTATAATTATTTGAACTGGTTCGGTAAACAGATTTATTTTTTAAATTTTTTACTTATTAATTT
254 AGTCATAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTT
* * ** ** *
26548445 TTGAAAGATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGATTA-AAAACAATTAT
319 TTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTACAAGAACAAAATAATTAT
* * * * * * * * * * * *
26548509 TATATGACCAAACAAAAGACAATAACGATTTGAAATAGATAAATATTGAAATGGCCATAATTATT
384 TTTATGACAAAATAAAAGTC-TTAACTATTTAAAATAGATAATTATTCAAATAGTCATAACTATT
* * * **
26548574 TGAATTGATTCGGTAAATAGATTTACTTTGTAAATGACTTACTTATTAATTTTTGAAATATTAAT
448 TGAATTGATTCGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAA-TTTTGAAATATTAAT
* * * * * * *
26548639 AAATTAATATTATTTTATTTCGAA-TAAACTTGTATGAATTGATAGAATTGTTTTATGACAAAAT
512 AAATTAGTATTATTTTA-TTCGAACTAAACTTGTATGAACTAAAACAATTATTTTATGA-TAAAT
* * * * * *
26548703 -AAAAGGTAATAACGATTTTAAATAGACAATTGTTTAAATAGTCATAACTATTTGAATTTG-TTG
575 CAAAAGGTTATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTAAACTTGTTTG
* * *
26548766 ATTAAACAAATTTATTTTTTTTAAA-CTCTTACTTATTAATTTTGGAAATATTAAGAAATTAGTA
640 -GTAAACAAATTTA--TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTA
*
26548830 TTATTTTATTTTGGATAAAT
702 TTATTTTATTTTGAATAAAT
* * ** * * * ** *
26548850 TTTTATGAACTGAAGCAATTATTTTATGTCAAAATAAAAGGTCATAATGATTTTAAATA-ATTAA
1 TTATATGAATTGAAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGA-TAA
* * * ** *
26548914 TTATTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATGAATTTATTTTTTCAAATATTTTG
65 TTATTCAAATAGTCTTAACTATTTAAACTGGTTCGGTAAACAAATTTATTTTTT--AA-A-TCT-
* * * * *
26548979 CTTATTAATTTTTTG-AATGTTAATAAATTTGAATTATTAT-ATTCTGAATAAA-CTTGTAAG-A
125 CTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGAA
* * * * * * *
26549040 TATAAAACAAGTATTTTATAACTA-AACAAAAAGTCAGAATGATTTGAAATAGATAATTATTCGA
189 TA-AAAATAATTATTTTATGAC-AGAACAAAATGTCATAAAGATTTGAAATAGATAATTATTCAA
** * * * * *
26549104 ATAGTTTTAACTATTTGAATTGGTTCGGTAAACACATTTATTTTTTAAATATCTTAGTTATTAAT
252 ATAGTCATAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAAT
* * ** *
26549169 TTTTGAAATATTATTAAATTAGTATTATTTT-TAATCGAATAAGCTTGT--ATTATCAAAA-AAT
317 TTTTGAAATATTAATAAATTAGTATTATTTTAT-TTCGAATAAGCTTGTACAAGAACAAAATAA-
* * * * * * * * * *
26549230 TTTTTTTATGACAAAA-CAAAGATTTTAACGATGTGATATTGATAATTGTTCAAATAGTCTTAAC
380 TTATTTTATGACAAAATAAAAG-TCTTAACTATTTAAAATAGATAATTATTCAAATAGTCATAAC
* * * * *
26549294 TATTTTAAACTAATTTGGTAAACAAATTTATTTTTTAAAT
444 TA-TTTGAATTGATTCGGTAAACAGATTTATTTTTTAAAT
26549334 GATTTAAAAT
Statistics
Matches: 6044, Mismatches: 1275, Indels: 725
0.75 0.16 0.09
Matches are distributed among these distances:
694 3 0.00
695 2 0.00
696 100 0.02
697 164 0.03
698 6 0.00
699 1 0.00
700 4 0.00
701 1 0.00
702 65 0.01
703 76 0.01
704 3 0.00
705 8 0.00
706 60 0.01
707 12 0.00
708 9 0.00
709 53 0.01
710 64 0.01
711 44 0.01
712 7 0.00
713 4 0.00
714 1 0.00
715 10 0.00
716 65 0.01
717 215 0.04
718 602 0.10
719 743 0.12
720 748 0.12
721 238 0.04
722 240 0.04
723 695 0.11
724 687 0.11
725 321 0.05
726 193 0.03
727 16 0.00
728 6 0.00
729 4 0.00
730 3 0.00
731 2 0.00
732 89 0.01
733 89 0.01
734 176 0.03
735 147 0.02
736 54 0.01
737 14 0.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (721 bp):
TTATATGAATTGAAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAAT
TATTCAAATAGTCTTAACTATTTAAACTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTTATT
AATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCTGAATAAACCTTGTATGAATAAAAAT
AATTATTTTATGACAGAACAAAATGTCATAAAGATTTGAAATAGATAATTATTCAAATAGTCATA
ACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAAT
ATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTACAAGAACAAAATAATTATTTTATGA
CAAAATAAAAGTCTTAACTATTTAAAATAGATAATTATTCAAATAGTCATAACTATTTGAATTGA
TTCGGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTGAAATATTAATAAATTAGTA
TTATTTTATTCGAACTAAACTTGTATGAACTAAAACAATTATTTTATGATAAATCAAAAGGTTAT
AACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTAAACTTGTTTGGTAAACAAATT
TATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGA
ATAAAT
Found at i:26549355 original size:19 final size:19
Alignment explanation
Indices: 26549331--26549367 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26549321 TTATTTTTTA
26549331 AATGATTTAAAATAGTTAT
1 AATGATTTAAAATAGTTAT
*
26549350 AATGATTTTAAATAGTTA
1 AATGATTTAAAATAGTTA
26549368 ATTATTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (19 bp):
AATGATTTAAAATAGTTAT
Found at i:26550049 original size:58 final size:58
Alignment explanation
Indices: 26549947--26550218 Score: 278
Period size: 59 Copynumber: 4.7 Consensus size: 58
26549937 TTGTGTAGGG
* * *** * * * * *
26549947 AAAATTGATACTTTTAA-TTTTTTCTTGAAATATCTTTTAAAAATTTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGTTTAATTTCAAGA
* * *
26550004 AAAATTTATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAATTTTAATTT-AAAA
1 AAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGTTTAATTTCAAGA
* * * *
26550061 AAAATTGATACTTTCAATTTTTTCTCAAAAATATATTTTTTGGAAAGTTTATTTTCAAGA
1 AAAATTGATACTTTCAA-CTTTTCTCCAAAA-ATATTTTTTAGAAAGTTTAATTTCAAGA
* * * * * *
26550121 AAAATTGATATTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAGCTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCTCCAAAAATA-TTTTTTAGAAAGTTTAATTTCAAGA
* *
26550180 AAAATTGATATTTTCAACTTTTCTTCAAAAATATTTTTT
1 AAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTT
26550219 TTGAATTTTA
Statistics
Matches: 184, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
57 32 0.17
58 49 0.27
59 84 0.46
60 19 0.10
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.47
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAAGTTTAATTTCAAGA
Found at i:26550229 original size:117 final size:117
Alignment explanation
Indices: 26549987--26550231 Score: 298
Period size: 117 Copynumber: 2.1 Consensus size: 117
26549977 TATCTTTTAA
* * * * * **
26549987 AAATTTTAATTTCGAGGAAAATTTATACTTTCAACTTTTCTCCAAAAATATTTTTTAGAAATTTT
1 AAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTAGAAAGCTT
*
26550052 AATTTAAAAAAAATTGATACTTTCAATTTTTTCTCAAAAATATATTTTTTGG
66 AATTTAAAAAAAATTGATACTTTCAATTTTCTCTCAAAAATATATTTTTTGG
* * *
26550104 AAAGTTTATTTTCAAGAAAAATTGATATTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAGCT
1 AAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTAGAAAGCT
* ** * *
26550169 TATTTTCAAGGAAAATTGATATTTTCAACTTTTCT-TCAAAAATAT-TTTTTTTG
65 TAATTT-AAAAAAAATTGATACTTTCAA-TTTTCTCTCAAAAATATATTTTTTGG
26550222 -AATTTTATTT
1 AAATTTTATTT
26550232 AAAGAGAATA
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
117 52 0.48
118 23 0.21
119 28 0.26
120 5 0.05
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (117 bp):
AAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTAGAAAGCTT
AATTTAAAAAAAATTGATACTTTCAATTTTCTCTCAAAAATATATTTTTTGG
Found at i:26550264 original size:16 final size:16
Alignment explanation
Indices: 26550243--26550387 Score: 58
Period size: 16 Copynumber: 8.9 Consensus size: 16
26550233 AAGAGAATAA
26550243 AATAAATAATAAAAAT
1 AATAAATAATAAAAAT
*
26550259 AATAAA-AATGAAAAT
1 AATAAATAATAAAAAT
**
26550274 AA-AAATAA-AGGAA-
1 AATAAATAATAAAAAT
26550287 AAT-AA-AATAAAAAT
1 AATAAATAATAAAAAT
*
26550301 AA-AAAGTATTAAACAAATCT
1 AATAAA-TAAT-AA-AAA--T
*
26550321 AATCTAATGAATAAATAAT
1 AAT-AAAT-AATAAA-AAT
26550340 AAT-AATAATAATAAAT
1 AATAAATAATAA-AAAT
*
26550356 ATATATATAAATAAAAAT
1 A-ATAAAT-AATAAAAAT
26550374 GAA-AAATAA-AAAAA
1 -AATAAATAATAAAAA
26550388 AAACCTGAAA
Statistics
Matches: 98, Mismatches: 11, Indels: 41
0.65 0.07 0.27
Matches are distributed among these distances:
12 2 0.02
13 7 0.07
14 9 0.09
15 17 0.17
16 19 0.19
17 11 0.11
18 10 0.10
19 10 0.10
20 4 0.04
21 5 0.05
22 4 0.04
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.23
Consensus pattern (16 bp):
AATAAATAATAAAAAT
Found at i:26550272 original size:6 final size:5
Alignment explanation
Indices: 26550238--26550304 Score: 50
Period size: 5 Copynumber: 13.4 Consensus size: 5
26550228 ATTTAAAGAG
* * **
26550238 AATAA AAT-A AATAA TA-AA AATAA TA-AA AATGAA AATAAA AATAA AGGAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AAT-AA AAT-AA AATAA AATAA
26550287 AATAA AATAAA AATAA AA
1 AATAA AAT-AA AATAA AA
26550305 AGTATTAAAC
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
4 10 0.21
5 23 0.48
6 15 0.31
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:26550293 original size:27 final size:27
Alignment explanation
Indices: 26550241--26550305 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
26550231 TAAAGAGAAT
*
26550241 AAAATAAATAATAAAAATAATAAAAATG
1 AAAATAAA-AATAAAAATAATAAAAATA
26550269 AAAATAAAAATAAAGGAA-AAT-AAAATA
1 AAAATAAAAATAAA--AATAATAAAAATA
26550296 AAAATAAAAA
1 AAAATAAAAA
26550306 GTATTAAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
27 21 0.62
28 11 0.32
29 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (27 bp):
AAAATAAAAATAAAAATAATAAAAATA
Found at i:26550303 original size:21 final size:20
Alignment explanation
Indices: 26550241--26550305 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 20
26550231 TAAAGAGAAT
26550241 AAAATAAATAATAAAAATAATA
1 AAAATAAA-AATAAAAATAA-A
*
26550263 AAAATGAAAATAAAAATAAA
1 AAAATAAAAATAAAAATAAA
26550283 GGAAAAT-AAAATAAAAATAAA
1 --AAAATAAAAATAAAAATAAA
26550304 AA
1 AA
26550306 GTATTAAACA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 25 0.62
22 12 0.30
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (20 bp):
AAAATAAAAATAAAAATAAA
Found at i:26550305 original size:6 final size:6
Alignment explanation
Indices: 26550241--26550390 Score: 56
Period size: 6 Copynumber: 23.7 Consensus size: 6
26550231 TAAAGAGAAT
* *
26550241 AAAATA AATAATA AAAAT- --AATA AAAATG AAAATA AAAATA AAGGAAAA
1 AAAATA AA-AATA AAAATA AAAATA AAAATA AAAATA AAAATA AA--AATA
* * ** *
26550289 TAAAATA AAAATA AAAAGTA TTAAACA AATCTA ATCTAATGA ATAAATA
1 -AAAATA AAAATA AAAA-TA -AAAATA AAAATA A--AAAT-A A-AAATA
* * * * *
26550338 ATAATA ATAATA ATAAATA TATATA TAAATA AAAATGA AAAATA AAAA-A
1 AAAATA AAAATA A-AAATA AAAATA AAAATA AAAAT-A AAAATA AAAATA
26550387 AAAA
1 AAAA
26550391 CCTGAAACGG
Statistics
Matches: 109, Mismatches: 21, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
3 3 0.03
5 5 0.05
6 63 0.58
7 24 0.22
8 10 0.09
9 4 0.04
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (6 bp):
AAAATA
Found at i:26550365 original size:12 final size:10
Alignment explanation
Indices: 26550325--26550382 Score: 57
Period size: 10 Copynumber: 5.6 Consensus size: 10
26550315 AAATCTAATC
26550325 TAATGAATAAA
1 TAAT-AATAAA
26550336 TAATAAT-AA
1 TAATAATAAA
26550345 TAATAATAAA
1 TAATAATAAA
26550355 TATATATATAAA
1 TA-ATA-ATAAA
*
26550367 TAAAAATGAAA
1 TAATAAT-AAA
26550378 -AATAA
1 TAATAA
26550383 AAAAAAAACC
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
9 9 0.22
10 13 0.32
11 12 0.29
12 7 0.17
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.29
Consensus pattern (10 bp):
TAATAATAAA
Found at i:26550644 original size:26 final size:27
Alignment explanation
Indices: 26550594--26550646 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
26550584 AGCAGAACCC
26550594 TCTTTCCCTCTTTCCCTCTCTCTCTCT
1 TCTTTCCCTCTTTCCCTCTCTCTCTCT
*
26550621 TCTTTCCTCTTTTCTCCCTC-CTCTCT
1 TCTTTCC-CTCTT-TCCCTCTCTCTCT
26550647 AAAAACCCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 7 0.30
28 10 0.43
29 6 0.26
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (27 bp):
TCTTTCCCTCTTTCCCTCTCTCTCTCT
Found at i:26551244 original size:20 final size:20
Alignment explanation
Indices: 26551208--26551272 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
26551198 ACAAAAATAT
*
26551208 TAAT-AGATAATAAAAGAAAA
1 TAATAAGATAA-ATAAGAAAA
*
26551228 TAATAAGATAAATAAGAATAT
1 TAATAAGATAAATAAGAA-AA
* *
26551249 TAA-CAGATAAATTA-AAAA
1 TAATAAGATAAATAAGAAAA
26551267 TAATAA
1 TAATAA
26551273 TAGATAAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
18 4 0.11
19 3 0.08
20 19 0.53
21 10 0.28
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.25
Consensus pattern (20 bp):
TAATAAGATAAATAAGAAAA
Found at i:26551248 original size:41 final size:40
Alignment explanation
Indices: 26551203--26551301 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 40
26551193 CGAATACAAA
26551203 AATATTAATAGATAA-TAAAAGAAAATAATAAGATAAATAAG
1 AATATTAATAGATAATTAAAA-AAAATAAT-AGATAAATAAG
* * * *
26551244 AATATTAACAGATAAATTAAAAATAATAATAGATAAATTAT
1 AATATTAATAGAT-AATTAAAAAAAATAATAGATAAATAAG
26551285 AATATATAAATAGATAA
1 AATAT-T-AATAGATAA
26551302 ATAATAATAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
41 26 0.53
42 12 0.24
43 11 0.22
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.28
Consensus pattern (40 bp):
AATATTAATAGATAATTAAAAAAAATAATAGATAAATAAG
Found at i:26551281 original size:14 final size:14
Alignment explanation
Indices: 26551264--26551331 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 14
26551254 GATAAATTAA
26551264 AAATAATAATAGAT
1 AAATAATAATAGAT
* *
26551278 AAATTATAATATAT
1 AAATAATAATAGAT
*
26551292 AAATAGATAAATAATAAT
1 AAATA-AT-AAT-A-GAT
26551310 AAATATATAACTAGAT
1 AAATA-ATAA-TAGAT
26551326 AAATAA
1 AAATAA
26551332 AAAAATATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
14 16 0.37
15 3 0.07
16 10 0.23
17 4 0.09
18 10 0.23
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (14 bp):
AAATAATAATAGAT
Found at i:26551314 original size:26 final size:24
Alignment explanation
Indices: 26551253--26551346 Score: 99
Period size: 26 Copynumber: 4.0 Consensus size: 24
26551243 GAATATTAAC
*
26551253 AGATAAAT-TAAAAATA-AT-AAT
1 AGATAAATAAAAAAATATATAAAT
* *
26551274 AGATAAAT--TATAATATATAAAT
1 AGATAAATAAAAAAATATATAAAT
*
26551296 AGATAAATAATAATAAATATATAACT
1 AGATAAATAA-AA-AAATATATAAAT
26551322 AGATAAATAAAAAAATATATAAAT
1 AGATAAATAAAAAAATATATAAAT
26551346 A
1 A
26551347 TTAACAGAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
20 5 0.08
21 10 0.16
22 11 0.18
24 12 0.20
25 3 0.05
26 20 0.33
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (24 bp):
AGATAAATAAAAAAATATATAAAT
Found at i:26551339 original size:22 final size:21
Alignment explanation
Indices: 26551195--26551340 Score: 102
Period size: 21 Copynumber: 6.7 Consensus size: 21
26551185 GTAAAAATCG
*
26551195 AATACAAAAATATTAATAGAT-
1 AATAAAAAAATA-TAATAGATA
26551216 AATAAAAGAAA-ATAATAAGATA
1 AATAAAA-AAATATAAT-AGATA
* * *
26551238 AATAAGAATAT-TAACAGATA
1 AATAAAAAAATATAATAGATA
*
26551258 AAT-TAAAAATAATAATAGATA
1 AATAAAAAAAT-ATAATAGATA
* * *
26551279 AATTATAATATATAAATAGATA
1 AATAAAAAAATAT-AATAGATA
26551301 AATAATAATAAATATATAACTAGATA
1 AAT-A-AA-AAA-ATATAA-TAGATA
26551327 AATAAAAAAATATA
1 AATAAAAAAATATA
26551341 TAAATATTAA
Statistics
Matches: 98, Mismatches: 14, Indels: 25
0.72 0.10 0.18
Matches are distributed among these distances:
19 4 0.04
20 12 0.12
21 29 0.30
22 29 0.30
23 3 0.03
24 3 0.03
25 5 0.05
26 13 0.13
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.27
Consensus pattern (21 bp):
AATAAAAAAATATAATAGATA
Found at i:26551363 original size:28 final size:31
Alignment explanation
Indices: 26551244--26551365 Score: 94
Period size: 34 Copynumber: 3.8 Consensus size: 31
26551234 GATAAATAAG
26551244 AATAT-TAAC-AGATAAATTAAAAATAATAATA
1 AATATATAACTAGATAAA-TAAAAA-AATAATA
* *
26551275 GATAAATTATAA-TATATAAATAGATAAATAATAATA
1 -A-ATA-TATAACTAGATAAATA-A-AAA-AATAATA
26551311 AATATATAACTAGATAAATAAAAAAATATATA
1 AATATATAACTAGATAAATAAAAAAATA-ATA
*
26551343 AATAT-TAAC-AGA-AAAGAAAAAAA
1 AATATATAACTAGATAAATAAAAAAA
26551366 AAGAAAAGAA
Statistics
Matches: 77, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
29 10 0.13
30 3 0.04
31 8 0.10
32 12 0.16
33 8 0.10
34 14 0.18
35 11 0.14
36 11 0.14
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (31 bp):
AATATATAACTAGATAAATAAAAAAATAATA
Found at i:26551366 original size:30 final size:31
Alignment explanation
Indices: 26551261--26551367 Score: 78
Period size: 31 Copynumber: 3.4 Consensus size: 31
26551251 ACAGATAAAT
* * *
26551261 TAAAAATAATAATAGATAAAT-TATAA-TATA
1 TAAAAAAAAAAATA-ATAAATATATAACTAGA
*
26551291 TAAATAGATAAATAATAATAAATATATAACTAGA
1 TAAA-A-A-AAAAAATAATAAATATATAACTAGA
*
26551325 TAAATAAAAAAATATATAAATAT-TAAC-AGA
1 TAAAAAAAAAAATA-ATAAATATATAACTAGA
*
26551355 AAAGAAAAAAAAA
1 TAA-AAAAAAAAA
26551368 GAAAAGAAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
30 9 0.14
31 20 0.31
32 16 0.25
33 12 0.19
34 7 0.11
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (31 bp):
TAAAAAAAAAAATAATAAATATATAACTAGA
Found at i:26551372 original size:15 final size:15
Alignment explanation
Indices: 26551352--26551381 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26551342 AAATATTAAC
26551352 AGAAAAGAAAAAAAA
1 AGAAAAGAAAAAAAA
26551367 AGAAAAGAAAAAAAA
1 AGAAAAGAAAAAAAA
26551382 TAAAGATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AGAAAAGAAAAAAAA
Found at i:26551428 original size:15 final size:15
Alignment explanation
Indices: 26551398--26551438 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
26551388 TATATATATT
26551398 AATAAATAGTAATAATA
1 AATAAATA--AATAATA
26551415 AATAAATAAATAATA
1 AATAAATAAATAATA
*
26551430 AATACATAA
1 AATAAATAA
26551439 GATACAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.65
17 8 0.35
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (15 bp):
AATAAATAAATAATA
Done.