Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 26 of 130
Found at i:6715080 original size:16 final size:17
Alignment explanation
Indices: 6715040--6715081 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
6715030 AGTTGAATCA
*
6715040 TTATTCCTTTTTTTTAT
1 TTATTCTTTTTTTTTAT
*
6715057 TTCATTCTTTTTTTTTCT
1 TT-ATTCTTTTTTTTTAT
6715075 TT-TTCTT
1 TTATTCTT
6715082 GAATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 5 0.23
17 2 0.09
18 15 0.68
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (17 bp):
TTATTCTTTTTTTTTAT
Found at i:6725480 original size:6 final size:7
Alignment explanation
Indices: 6725462--6725496 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
6725452 TATGCTTGAA
6725462 AAAAAAT
1 AAAAAAT
6725469 AAAAAAAT
1 -AAAAAAT
6725477 AAAAAAT
1 AAAAAAT
6725484 AAAAAAT
1 AAAAAAT
6725491 AAAAAA
1 AAAAAA
6725497 AAGACTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.74
8 7 0.26
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:6726552 original size:41 final size:41
Alignment explanation
Indices: 6726496--6726634 Score: 190
Period size: 41 Copynumber: 3.4 Consensus size: 41
6726486 GGTCAATGAA
* **
6726496 CAATTTACTTTCAAAGTTATGG-TGCCTCTGTTTAGAAAAG
1 CAATTTATTTTCAAAGTTATGGTTGCCTCTGTTTAGAGGAG
* * *
6726536 CAATTTATTTTTCAAAGTCATGGTTGCCTTTATTTAGAGGAG
1 CAATTTA-TTTTCAAAGTTATGGTTGCCTCTGTTTAGAGGAG
*
6726578 CAATTTATTTTCAAAGTTATGGTTACCTCTGTTTAGAGGAG
1 CAATTTATTTTCAAAGTTATGGTTGCCTCTGTTTAGAGGAG
6726619 CAATTTATTTTTCAAA
1 CAATTTA-TTTTCAAA
6726635 ATCGTTGAGC
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 7 0.08
41 50 0.58
42 29 0.34
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.42
Consensus pattern (41 bp):
CAATTTATTTTCAAAGTTATGGTTGCCTCTGTTTAGAGGAG
Found at i:6726650 original size:82 final size:82
Alignment explanation
Indices: 6726496--6726658 Score: 238
Period size: 82 Copynumber: 2.0 Consensus size: 82
6726486 GGTCAATGAA
* * *
6726496 CAATTTACTTTCAAAGTTATGGTGCCTCTGTTTAGAAAAGCAATTTATTTTTCAAAGTCATGGTT
1 CAATTTACTTTCAAAGTTATGGTACCTCTGTTTAGAAAAGCAATTTATTTTTCAAAATCATGGTA
6726561 GCCTTTATTTAGAGGAG
66 GCCTTTATTTAGAGGAG
* ** * *
6726578 CAATTTATTTTCAAAGTTATGGTTACCTCTGTTTAGAGGAGCAATTTATTTTTCAAAATCGTTG-
1 CAATTTACTTTCAAAGTTATGG-TACCTCTGTTTAGAAAAGCAATTTATTTTTCAAAATCATGGT
6726642 AGCCTTTATTTAGAGGA
65 AGCCTTTATTTAGAGGA
6726659 ACATCAATTT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
82 37 0.51
83 35 0.49
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (82 bp):
CAATTTACTTTCAAAGTTATGGTACCTCTGTTTAGAAAAGCAATTTATTTTTCAAAATCATGGTA
GCCTTTATTTAGAGGAG
Found at i:6726654 original size:41 final size:41
Alignment explanation
Indices: 6726534--6726658 Score: 130
Period size: 41 Copynumber: 3.0 Consensus size: 41
6726524 TGTTTAGAAA
* * * *
6726534 AGCAATTTATTTTTCAAAGTCATGGTTGCCTTTATTTAGAGG
1 AGCAATTTATTTTTCAAAATCGTTG-AGCCTTTATTTAGAGG
* * *
6726576 AGCAATTTA-TTTTCAAAGTTATGGTT-A-CCTCTGTTTAGAGG
1 AGCAATTTATTTTTCAAA---ATCGTTGAGCCTTTATTTAGAGG
6726617 AGCAATTTATTTTTCAAAATCGTTGAGCCTTTATTTAGAGG
1 AGCAATTTATTTTTCAAAATCGTTGAGCCTTTATTTAGAGG
6726658 A
1 A
6726659 ACATCAATTT
Statistics
Matches: 67, Mismatches: 10, Indels: 13
0.74 0.11 0.14
Matches are distributed among these distances:
39 5 0.07
40 1 0.01
41 42 0.63
42 17 0.25
44 2 0.03
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (41 bp):
AGCAATTTATTTTTCAAAATCGTTGAGCCTTTATTTAGAGG
Found at i:6726690 original size:83 final size:84
Alignment explanation
Indices: 6726505--6726702 Score: 214
Period size: 83 Copynumber: 2.4 Consensus size: 84
6726495 ACAATTTACT
** * *
6726505 TTCAAAGTTATGG-T-GCCTCTGTTTAGAAAAGCAATTTATTTTTCAAAGTCATGGTTGCCTTTA
1 TTCAAAGTTATGGTTAGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAATCATGGTAGCCTTTA
* * *
6726568 TTTAGAGGAGCAATTTATT
66 TTTAGAGGAACAAATTATC
* *
6726587 TTCAAAGTTATGGTTA-CCTCTGTTTAGAGGAGCAATTTATTTTTCAAAATCGTTG-AGCCTTTA
1 TTCAAAGTTATGGTTAGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAATCATGGTAGCCTTTA
6726650 TTTAGAGGAACATCAATT-TC
66 TTTAGAGGAACA--AATTATC
*
6726670 TTCAAAAG-T-T-GTTAAGCCTCTGCTTAGAGGAGC
1 TTC-AAAGTTATGGTT-AGCCTCTGTTTAGAGGAGC
6726703 TTTGTTTATT
Statistics
Matches: 99, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
81 3 0.03
82 33 0.33
83 56 0.57
84 7 0.07
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (84 bp):
TTCAAAGTTATGGTTAGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAATCATGGTAGCCTTTA
TTTAGAGGAACAAATTATC
Found at i:6726733 original size:45 final size:44
Alignment explanation
Indices: 6726673--6726830 Score: 208
Period size: 45 Copynumber: 3.5 Consensus size: 44
6726663 CAATTTCTTC
* *
6726673 AAAAGTTGTTAAGCCTCTGCTTAGAGGAGCTTTGTTTATTTTTAT
1 AAAAGTTGTTGAGCCTCTGCTTAGAAGAGCTTTGTTTATTTTT-T
*
6726718 AAAAGTTGTTGAGCCTCTGTTTAGAAGAGCTTTGTTTATTTTTCT
1 AAAAGTTGTTGAGCCTCTGCTTAGAAGAGCTTTGTTTATTTTT-T
* * *
6726763 CAAAAATTGTTTAGCCTCTGATTAGAAGAGCTTTGTTTATTTTTT
1 -AAAAGTTGTTGAGCCTCTGCTTAGAAGAGCTTTGTTTATTTTTT
* **
6726808 CAAAGTCATTGAGCCTCTGCTTA
1 AAAAGTTGTTGAGCCTCTGCTTA
6726831 AGGGAACTTT
Statistics
Matches: 99, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
44 17 0.17
45 42 0.42
46 40 0.40
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (44 bp):
AAAAGTTGTTGAGCCTCTGCTTAGAAGAGCTTTGTTTATTTTTT
Found at i:6727080 original size:17 final size:17
Alignment explanation
Indices: 6727054--6727103 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
6727044 AAGCATTTTT
*
6727054 TTATTATTTTGTTATTA
1 TTATTTTTTTGTTATTA
6727071 TTATTTTTTTGTTTATTA
1 TTATTTTTTTG-TTATTA
*
6727089 TT-TATTTTTGTTATT
1 TTATTTTTTTGTTATT
6727104 TACTATTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 5 0.17
17 17 0.57
18 8 0.27
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (17 bp):
TTATTTTTTTGTTATTA
Found at i:6727557 original size:20 final size:19
Alignment explanation
Indices: 6727534--6727581 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 19
6727524 AGCCAAAAAC
6727534 CTAGATTTTGACGTACTTTT
1 CTAG-TTTTGACGTACTTTT
6727554 CTAGTTTTTGACGTACTTTT
1 CTAG-TTTTGACGTACTTTT
6727574 CTAGTTTT
1 CTAGTTTT
6727582 CAGTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.54
Consensus pattern (19 bp):
CTAGTTTTGACGTACTTTT
Found at i:6727997 original size:6 final size:6
Alignment explanation
Indices: 6727986--6728017 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
6727976 CTTAAATTCT
6727986 TTTTAA TTTTAA TTTTAA TTTT-- TTTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
6728018 TCTTTTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
4 4 0.17
6 20 0.83
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTTAA
Found at i:6728017 original size:9 final size:10
Alignment explanation
Indices: 6727980--6728018 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
6727970 GTATTCCTTA
*
6727980 AATTCTTTTT
1 AATTTTTTTT
6727990 AATTTTAATTTT
1 AATTTT--TTTT
6728002 AATTTTTTTT
1 AATTTTTTTT
6728012 AATTTTT
1 AATTTTT
6728019 CTTTTTAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 16 0.62
12 10 0.38
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (10 bp):
AATTTTTTTT
Found at i:6728202 original size:58 final size:58
Alignment explanation
Indices: 6728035--6728413 Score: 324
Period size: 60 Copynumber: 6.3 Consensus size: 58
6728025 AATGAAAATT
* * * *
6728035 TTAAAA-TAAAA-TTCTAAAAAAAAATATTTAGGAAAAAGTTGAAAGTATTAATTTTTC
1 TTAAAATTAAAATTTC-AAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTC
* *
6728092 TTTAAAATAAAAATTATCAAGAAAAATA-TTTTAGGAAAAAGTTGAAAGTATCAATTTTTC
1 -TTAAAATTAAAATT-TCAA-AAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTC
**
6728152 TTAAAATTAAAATTTCAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTT-
1 TTAAAATTAAAATTTCAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTC
* * * *
6728209 TTTAAAGTAAAATTTCTAAAATAAAT-TTTTCAA-AAAATATTTTGAGGAAAAGTTGAAAGTATC
1 TTAAAATTAAAATTTC-AAAA-AAATATTTTTAAGAAAA-A-GTT---G---A----AA-GTATC
*
6728272 ATTTTTTC
51 AATTTTTC
*
6728280 TTAAAATTAAAATTTCAGAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTT-
1 TTAAAATTAAAATTTCA-AAAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTC
* * *
6728338 TTAAAAATAAAAATTATTAAGAAAAA-ATATTTTAAGAAAAAGTTAAAAGTATCAATTTTTC
1 TT-AAAATTAAAATT-TCAA-AAAAATAT-TTTTAAGAAAAAGTTGAAAGTATCAATTTTTC
*
6728399 TTAAAATAAAAATTT
1 TTAAAATTAAAATTT
6728414 TCGAATGCTT
Statistics
Matches: 269, Mismatches: 23, Indels: 57
0.77 0.07 0.16
Matches are distributed among these distances:
57 25 0.09
58 51 0.19
59 49 0.18
60 83 0.31
61 10 0.04
62 1 0.00
64 1 0.00
65 1 0.00
67 1 0.00
69 2 0.01
70 18 0.07
71 23 0.09
72 4 0.01
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37
Consensus pattern (58 bp):
TTAAAATTAAAATTTCAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTC
Found at i:6728265 original size:128 final size:129
Alignment explanation
Indices: 6728113--6728413 Score: 419
Period size: 128 Copynumber: 2.4 Consensus size: 129
6728103 AATTATCAAG
6728113 AAAAATATTTTAGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTCA-AAAAAATA
1 AAAAATATTTTAGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTCAGAAAAAATA
* * *
6728177 TTTTTGGGAAAAAGTTGAAAGTATCAATTTTTTTTAAAGTAAAATTTCTAAAATAAATTTTTCA
66 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTTTTAAAAATAAAATTTCTAAAATAAATTTTTCA
*
6728241 AAAAATATTTTGAGG-AAAAGTTGAAAGTATCATTTTTTCTTAAAATTAAAATTTCAGAAAAAAT
1 AAAAATATTTT-AGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTCAGAAAAAAT
* * *
6728305 ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTTTAAAAATAAAA-AT-T---ATTAA-----GA
65 ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTTTAAAAATAAAATTTCTAAAATAAATTTTTCA
* * *
6728360 AAAAATATTTTAAGAAAAAGTTAAAAGTATCAATTTTTCTTAAAATAAAAATTT
1 AAAAATATTTTAGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTT
6728414 TCGAATGCTT
Statistics
Matches: 159, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
118 2 0.01
119 48 0.30
124 4 0.03
127 1 0.01
128 52 0.33
129 52 0.33
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (129 bp):
AAAAATATTTTAGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTCAGAAAAAATA
TTTTTGAGAAAAAGTTGAAAGTATCAATTTTTTTAAAAATAAAATTTCTAAAATAAATTTTTCA
Found at i:6728372 original size:15 final size:15
Alignment explanation
Indices: 6728336--6728378 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
6728326 GTATCAATTT
6728336 TTTTAA-AAATAAAAA
1 TTTTAAGAAA-AAAAA
*
6728351 TTATTAAGAAAAAATA
1 TT-TTAAGAAAAAAAA
6728367 TTTTAAGAAAAA
1 TTTTAAGAAAAA
6728379 GTTAAAAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 12 0.48
16 10 0.40
17 3 0.12
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (15 bp):
TTTTAAGAAAAAAAA
Found at i:6728432 original size:54 final size:58
Alignment explanation
Indices: 6728256--6728454 Score: 176
Period size: 60 Copynumber: 3.4 Consensus size: 58
6728246 TATTTTGAGG
* * * * * * * * *
6728256 AAAAGTTGAAAGTATCATTTTTTCTTAAAATTAAAATTTCA-GAAAAAATATTTTTGAGA
1 AAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAAAATT-ATTAAGAAATA-CTTTAAAA
* * *
6728315 AAAAGTTGAAAGTATCAATTTTT-TTAAAAATAAAAATTATTAAGAAAAAATATTTTAAGA
1 AAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAAAATTATTAAG---AAATACTTTAAAA
* *
6728375 AAAAGTTAAAAGTATCAATTTTTCTT-AAAATAAAAATT-TT-CG-AATGCTTTAAAA
1 AAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAAAATTATTAAGAAATACTTTAAAA
*
6728429 AAAAATTAAAAGTATCAATTTTTCTT
1 AAAAGTTAAAAGTATCAATTTTTCTT
6728455 GCACAAAAGC
Statistics
Matches: 123, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
54 34 0.28
57 1 0.01
58 16 0.13
59 24 0.20
60 41 0.33
61 7 0.06
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (58 bp):
AAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAAAATTATTAAGAAATACTTTAAAA
Found at i:6739774 original size:27 final size:28
Alignment explanation
Indices: 6739741--6739797 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
6739731 ATGTTAATTT
6739741 ATGATTTACGAAATGTTTT-ACATAATG
1 ATGATTTACGAAATGTTTTGACATAATG
** *
6739768 ATGATTTTTGAAATGTTTTGACATTATG
1 ATGATTTACGAAATGTTTTGACATAATG
6739796 AT
1 AT
6739798 TTAATGAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 17 0.65
28 9 0.35
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.46
Consensus pattern (28 bp):
ATGATTTACGAAATGTTTTGACATAATG
Found at i:6742902 original size:126 final size:126
Alignment explanation
Indices: 6742650--6742900 Score: 291
Period size: 126 Copynumber: 2.0 Consensus size: 126
6742640 TAAGTAATGA
* *
6742650 AAATGTATTATTTAAAGTGTTTTTAACCAAAAAGACGCCTTAAATAATTCCTTTTAAAAAAATAT
1 AAATGTATTATTTAAAGTGTTTTTAACCAAAAAGACGCCTTAAATAATTCCTTTTAAAAAAAAAA
* *
6742715 TAGTGATTATTTAAAACATTTTTAGACAAAAAATACCTTAAATAATCCCCTCATATTTTTT
66 TAGTGATTATTTAAAACATTTTTAGACAAAAAACACCTTAAATAATCCCCTAATATTTTTT
* * * *
6742776 AAATGGTATTCATTTAAGGTGTTTTTAGA-TAAAAA-ATGTCTTAAATAA-TCTCTTTTAAAAAA
1 AAAT-GTATT-ATTTAAAGTGTTTTTA-ACCAAAAAGACGCCTTAAATAATTC-CTTTTAAAAAA
* * * *
6742838 TAAAAT-G-GATTATTTAAGACATTTTCTA-ACCAGAAACACCTTAAATAAT-CTCTAATATTTT
62 -AAAATAGTGATTATTTAAAACATTTT-TAGACAAAAAACACCTTAAATAATCCCCTAATATTTT
6742899 TT
125 TT
6742901 TATTGATGAT
Statistics
Matches: 107, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
125 12 0.11
126 41 0.38
127 30 0.28
128 23 0.21
129 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (126 bp):
AAATGTATTATTTAAAGTGTTTTTAACCAAAAAGACGCCTTAAATAATTCCTTTTAAAAAAAAAA
TAGTGATTATTTAAAACATTTTTAGACAAAAAACACCTTAAATAATCCCCTAATATTTTTT
Found at i:6743706 original size:5 final size:5
Alignment explanation
Indices: 6743696--6743728 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
6743686 GTTCATTTTT
6743696 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT
6743729 TTAAATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAA
Found at i:6743756 original size:3 final size:3
Alignment explanation
Indices: 6743748--6743874 Score: 75
Period size: 3 Copynumber: 41.0 Consensus size: 3
6743738 TAAATTTTTC
*
6743748 ATT ATT ATT ATG ATT ATT ATT ATT ATT ATT ATT ATT ATTT ATCT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT AT-T ATT
* *
6743795 AAT ATT -TT -TT ATTT ATCT AATT ATT -TT CTT -TT AGTT ATCT ATT
1 ATT ATT ATT ATT A-TT AT-T -ATT ATT ATT ATT ATT A-TT AT-T ATT
* * * *
6743838 AAT A-T ATTT ATCT ATT ATT TTT ATT TTT ATT TTT ATT
1 ATT ATT A-TT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
6743875 TTTTTCGGCT
Statistics
Matches: 100, Mismatches: 11, Indels: 26
0.73 0.08 0.19
Matches are distributed among these distances:
2 10 0.10
3 66 0.66
4 22 0.22
5 2 0.02
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:6743862 original size:43 final size:41
Alignment explanation
Indices: 6743761--6743864 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 41
6743751 ATTATTATGA
*
6743761 TTATTATTATTATTATTATTATTATTTATCTATTAATATTTT
1 TTATTATTATTATT-TTATTATTAGTTATCTATTAATATTTT
*
6743803 TTATTTATCTAATTATTTTCTT-TTAGTTATCTATTAATATATTT
1 TTA-TTAT-T-ATTATTTTATTATTAGTTATCTATTAATAT-TTT
*
6743847 ATCTATTATTTTTATTTT
1 -T-TATTATTATTATTTT
6743865 TATTTTTATT
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
42 3 0.06
43 28 0.53
44 9 0.17
45 11 0.21
46 2 0.04
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (41 bp):
TTATTATTATTATTTTATTATTAGTTATCTATTAATATTTT
Found at i:6743875 original size:6 final size:6
Alignment explanation
Indices: 6743852--6743877 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
6743842 TATTTATCTA
6743852 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
6743878 TTCGGCTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:6744135 original size:22 final size:23
Alignment explanation
Indices: 6744109--6744160 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
6744099 TAGAAACAAC
6744109 TTTAGAAATTTGTG-AGAAATTT
1 TTTAGAAATTTGTGAAGAAATTT
* **
6744131 TTTAG-AATTTTTGAAGATTTTT
1 TTTAGAAATTTGTGAAGAAATTT
6744153 TTTAGAAA
1 TTTAGAAA
6744161 ATTTTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 7 0.28
22 16 0.64
23 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (23 bp):
TTTAGAAATTTGTGAAGAAATTT
Found at i:6744137 original size:11 final size:11
Alignment explanation
Indices: 6744109--6744175 Score: 55
Period size: 11 Copynumber: 6.1 Consensus size: 11
6744099 TAGAAACAAC
6744109 TTTAGAAATTT
1 TTTAGAAATTT
* *
6744120 GTGAGAAATTT
1 TTTAGAAATTT
6744131 TTTAG-AATTT
1 TTTAGAAATTT
* **
6744141 TTGAAGATTTTT
1 TT-TAGAAATTT
*
6744153 TTTAGAAAATT
1 TTTAGAAATTT
*
6744164 TTTAAAAATTT
1 TTTAGAAATTT
6744175 T
1 T
6744176 CCAGAATCTG
Statistics
Matches: 41, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
10 7 0.17
11 29 0.71
12 5 0.12
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (11 bp):
TTTAGAAATTT
Found at i:6744617 original size:3 final size:3
Alignment explanation
Indices: 6744611--6744702 Score: 148
Period size: 3 Copynumber: 30.0 Consensus size: 3
6744601 TTTTTCTTAT
*
6744611 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
6744659 TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTTA TTGA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TT-A TTA
6744703 AATTAGAATA
Statistics
Matches: 83, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
3 77 0.93
4 6 0.07
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:6744753 original size:11 final size:11
Alignment explanation
Indices: 6744719--6744752 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
6744709 AATAATTTGA
6744719 TATTTCTTATTT
1 TATTT-TTATTT
6744731 TATTTTTATTT
1 TATTTTTATTT
6744742 TA-TTTTATTT
1 TATTTTTATTT
6744752 T
1 T
6744753 TTTAAATGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 9 0.41
11 8 0.36
12 5 0.23
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (11 bp):
TATTTTTATTT
Found at i:6744831 original size:58 final size:58
Alignment explanation
Indices: 6744763--6744993 Score: 274
Period size: 57 Copynumber: 4.0 Consensus size: 58
6744753 TTTAAATGAC
*
6744763 TTTCTT-AAAATAAAATTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATT
1 TTTCTTGAAAATAAATTTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATT
* *
6744820 TTTCTTGAAAATAAGTTTTCT-AAAAAATATTTTCGAG-AAAAGTTGAAAGTATCAATT
1 TTTCTTGAAAATAA-ATTTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATT
* * * * *
6744877 TTTCTTAAAAATAAATTTCTTAAAAAAATGTCTTTGAGGAAAAGTTGAAAATATCAATT
1 TTTCTTGAAAATAAATTTC-TAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATT
* * * * * *
6744936 TTTCTCGAAATTAAAGTTTC-AGAAAAACATTTTTG-GAAAAGGTTGAAAGTGTCAATT
1 TTTCTTGAAAATAAA-TTTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATT
6744993 T
1 T
6744994 AAAAAAATAT
Statistics
Matches: 148, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
56 4 0.03
57 59 0.40
58 46 0.31
59 35 0.24
60 4 0.03
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (58 bp):
TTTCTTGAAAATAAATTTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATT
Found at i:6744924 original size:116 final size:114
Alignment explanation
Indices: 6744763--6744993 Score: 306
Period size: 116 Copynumber: 2.0 Consensus size: 114
6744753 TTTAAATGAC
* * *
6744763 TTTCTTAAAATAAAATTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGA
1 TTTCTTAAAATAAAATTCTAAAAAAATATCTTTGAGAAAAAGTTGAAAATATCAATTTTTCTCGA
*
6744828 AAAT-AAGTTTTCTA-AAAAATATTTTCGAGAAAA-GTTGAAAGTATCAATT
66 AAATAAAG-TTTC-AGAAAAACATTTTCG-GAAAAGGTTGAAAGTATCAATT
* * *
6744877 TTTCTTAAAAATAAATTTCTTAAAAAAATGTCTTTGAGGAAAAGTTGAAAATATCAATTTTTCTC
1 TTTCTT-AAAATAAAATTC-TAAAAAAATATCTTTGAGAAAAAGTTGAAAATATCAATTTTTCTC
* * *
6744942 GAAATTAAAGTTTCAGAAAAACATTTTTGGAAAAGGTTGAAAGTGTCAATT
64 GAAAATAAAGTTTCAGAAAAACATTTTCGGAAAAGGTTGAAAGTATCAATT
6744993 T
1 T
6744994 AAAAAAATAT
Statistics
Matches: 102, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
114 6 0.06
115 17 0.17
116 76 0.75
117 3 0.03
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (114 bp):
TTTCTTAAAATAAAATTCTAAAAAAATATCTTTGAGAAAAAGTTGAAAATATCAATTTTTCTCGA
AAATAAAGTTTCAGAAAAACATTTTCGGAAAAGGTTGAAAGTATCAATT
Found at i:6747197 original size:11 final size:11
Alignment explanation
Indices: 6747181--6747219 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
6747171 AAATATTAAA
*
6747181 TTATATTATTT
1 TTATATTATAT
6747192 TTATATTTTATAT
1 TTATA--TTATAT
6747205 TTATATTATAT
1 TTATATTATAT
6747216 TTAT
1 TTAT
6747220 TTGTATTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 15 0.60
13 10 0.40
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATATTATAT
Found at i:6749206 original size:16 final size:16
Alignment explanation
Indices: 6749187--6749238 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
6749177 TTTAATCGAG
6749187 TTTGAATTATTTAAAA
1 TTTGAATTATTTAAAA
* * **
6749203 TTTGATTTATCTCTAA
1 TTTGAATTATTTAAAA
6749219 TTTGAATTA-TTAAAA
1 TTTGAATTATTTAAAA
6749234 TTTGA
1 TTTGA
6749239 TATTCGAATT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
15 8 0.29
16 20 0.71
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.52
Consensus pattern (16 bp):
TTTGAATTATTTAAAA
Found at i:6749207 original size:32 final size:32
Alignment explanation
Indices: 6749171--6749238 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
6749161 TAACAATTAT
*
6749171 TTTGAATTTA-ATCGAGTTTGAATTATTTAAAA
1 TTTGAATTTATATCGAATTTGAATTA-TTAAAA
* *
6749203 TTTG-ATTTATCTCTAATTTGAATTATTAAAA
1 TTTGAATTTATATCGAATTTGAATTATTAAAA
6749234 TTTGA
1 TTTGA
6749239 TATTCGAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
31 15 0.48
32 16 0.52
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.50
Consensus pattern (32 bp):
TTTGAATTTATATCGAATTTGAATTATTAAAA
Found at i:6750074 original size:6 final size:6
Alignment explanation
Indices: 6750063--6750089 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
6750053 TATAGTTAGG
6750063 GTCCTA GTCCTA GTCCTA GTCCTA GTC
1 GTCCTA GTCCTA GTCCTA GTCCTA GTC
6750090 TCCTAGCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.33, G:0.19, T:0.33
Consensus pattern (6 bp):
GTCCTA
Found at i:6753723 original size:2 final size:2
Alignment explanation
Indices: 6753718--6753743 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6753708 AATTATTACA
6753718 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6753744 TTGGATTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6754737 original size:23 final size:23
Alignment explanation
Indices: 6754710--6754777 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 23
6754700 TTAAAGGAAT
6754710 TTATTAATTAATTTTTATTATGA
1 TTATTAATTAATTTTTATTATGA
*
6754733 TTATT--TTAAATTTTTTATTATTTA
1 TTATTAATT-AA-TTTTTATTA-TGA
*
6754757 TTTTGTAATT-ATTTTTATTAT
1 TTAT-TAATTAATTTTTATTAT
6754778 AAAAAAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 15 0.41
24 14 0.38
25 2 0.05
27 2 0.05
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (23 bp):
TTATTAATTAATTTTTATTATGA
Found at i:6754774 original size:21 final size:21
Alignment explanation
Indices: 6754719--6754775 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
6754709 TTTATTAATT
6754719 AATT-TTTATTATGATTATTTTA
1 AATTATTTATTAT--TTATTTTA
* *
6754741 AATTTTTTATTATTTATTTTGT
1 AATTATTTATTATTTATTTT-A
6754763 AATTATTT-TTATT
1 AATTATTTATTATT
6754776 ATAAAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 12 0.39
22 11 0.35
23 8 0.26
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (21 bp):
AATTATTTATTATTTATTTTA
Found at i:6755415 original size:34 final size:34
Alignment explanation
Indices: 6755339--6755417 Score: 92
Period size: 34 Copynumber: 2.3 Consensus size: 34
6755329 AATATAAAAT
6755339 AACAATAATAACAATAATATCATAAAA-AAATAACA
1 AACAA-AATAACAATAATATCATAAAATAAATAA-A
*
6755374 TAA-AAAATAACATTAA-ATCATAAAATAAATAAA
1 -AACAAAATAACAATAATATCATAAAATAAATAAA
6755407 AATCAAAATAA
1 AA-CAAAATAA
6755418 AAAATAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
32 2 0.05
33 10 0.26
34 23 0.59
35 2 0.05
36 2 0.05
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.22
Consensus pattern (34 bp):
AACAAAATAACAATAATATCATAAAATAAATAAA
Found at i:6756606 original size:40 final size:40
Alignment explanation
Indices: 6756524--6756966 Score: 359
Period size: 40 Copynumber: 11.2 Consensus size: 40
6756514 AAGGCAATGG
* * *
6756524 ACTTTAAAT-TCAAAAGGC-TCATTTAACCAAAGGCAACAA
1 ACTTTAAATGTTAAAAAGCTTC-TTTAACCAGAGGCAACAA
* * * * *
6756563 ACTTTAAATGTTGAAATGCTTCTCTAACCAGAGGTAACGA
1 ACTTTAAATGTTAAAAAGCTTCTTTAACCAGAGGCAACAA
* * * * *
6756603 ACTTTAAATGTTGAAAAGCTACTCTCACCAGAGGTAACAA
1 ACTTTAAATGTTAAAAAGCTTCTTTAACCAGAGGCAACAA
* * * * *
6756643 ACTTTAAATGTTAAAAAGCTCCTATCACCAAAGGTAACAA
1 ACTTTAAATGTTAAAAAGCTTCTTTAACCAGAGGCAACAA
* * * * *
6756683 ACTTTAAA--TTCAAAAGCTCCTTTAACCAAAGACAATAA
1 ACTTTAAATGTTAAAAAGCTTCTTTAACCAGAGGCAACAA
* * *
6756721 ACTTTAAATGTTAAAAAGC-TCTTTTCACTAGAGACAACAA
1 ACTTTAAATGTTAAAAAGCTTC-TTTAACCAGAGGCAACAA
* * * * *
6756761 ACTTTAAA--TTCAAAAGCTTATTTAACCAAAGTCAATAA
1 ACTTTAAATGTTAAAAAGCTTCTTTAACCAGAGGCAACAA
* *
6756799 ACTTTAAATGTTAAAAGGC-TCATCTAACCAGAGGCAACAA
1 ACTTTAAATGTTAAAAAGCTTC-TTTAACCAGAGGCAACAA
* * *
6756839 ACTTTAAATGTTGAAAAGC-TCATTTCACCAGAGGCAATAA
1 ACTTTAAATGTTAAAAAGCTTC-TTTAACCAGAGGCAACAA
* * * * *
6756879 ACTTTAAA--TTCAAAAGCTTTTTTAACCAAATGTAACAA
1 ACTTTAAATGTTAAAAAGCTTCTTTAACCAGAGGCAACAA
* * * **
6756917 ACTTTAAATGTTAAAAGGCTCCTCTAACCAGAGGCAATGA
1 ACTTTAAATGTTAAAAAGCTTCTTTAACCAGAGGCAACAA
6756957 ACTTTAAATG
1 ACTTTAAATG
6756967 GCTCCTTTAA
Statistics
Matches: 329, Mismatches: 63, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
38 90 0.27
39 13 0.04
40 224 0.68
41 2 0.01
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.28
Consensus pattern (40 bp):
ACTTTAAATGTTAAAAAGCTTCTTTAACCAGAGGCAACAA
Found at i:6756734 original size:78 final size:78
Alignment explanation
Indices: 6756487--6757004 Score: 428
Period size: 78 Copynumber: 6.7 Consensus size: 78
6756477 TTATGCAAAT
* * * * ***
6756487 TTTAAAT-TTAAAAGGCTCTTCTCACCAAAGGCAATGGACTTTAAATTCAAAAGGCTCATTTAAC
1 TTTAAATGTTAAAAAGCTCCTCTAACCAAAGGTAACAAACTTTAAATTCAAAA-GCTCATTTAAC
*
6756551 CAAAGGCAACAAAC
65 CAAAGGCAATAAAC
* * * * * * * *
6756565 TTTAAATGTTGAAATGCTTCTCTAACCAGAGGTAACGAACTTTAAATGTTGAAAAGCT-ACTCTC
1 TTTAAATGTTAAAAAGCTCCTCTAACCAAAGGTAACAAACTTTAAA--TTCAAAAGCTCA-TTTA
* * *
6756629 ACCAGAGGTAACAAAC
63 ACCAAAGGCAATAAAC
* * *
6756645 TTTAAATGTTAAAAAGCTCCTATCACCAAAGGTAACAAACTTTAAATTCAAAAGCTCCTTTAACC
1 TTTAAATGTTAAAAAGCTCCTCTAACCAAAGGTAACAAACTTTAAATTCAAAAGCTCATTTAACC
*
6756710 AAAGACAATAAAC
66 AAAGGCAATAAAC
* * * * * ** *
6756723 TTTAAATGTTAAAAAGCTCTTTTCACTAGAGACAACAAACTTTAAATTCAAAAGCTTATTTAACC
1 TTTAAATGTTAAAAAGCTCCTCTAACCAAAGGTAACAAACTTTAAATTCAAAAGCTCATTTAACC
*
6756788 AAAGTCAATAAAC
66 AAAGGCAATAAAC
* * * * * *
6756801 TTTAAATGTTAAAAGGCTCATCTAACCAGAGGCAACAAACTTTAAATGTTGAAAAGCTCATTTCA
1 TTTAAATGTTAAAAAGCTCCTCTAACCAAAGGTAACAAACTTTAAA--TTCAAAAGCTCATTTAA
*
6756866 CCAGAGGCAATAAAC
64 CCAAAGGCAATAAAC
* ** * * * * *
6756881 TTTAAA--TTCAAAAGCTTTTTTAACCAAATGTAACAAACTTTAAATGTTAAAAGGCTCCTCTAA
1 TTTAAATGTTAAAAAGCTCCTCTAACCAAAGGTAACAAACTTTAAAT-TCAAAA-GCTCATTTAA
* *
6756944 CCAGAGGCAATGAAC
64 CCAAAGGCAATAAAC
* *
6756959 TTTAAATG-------GCTCCTTTAACCAAAGGTAACAAACTTTAAATTAAAAA
1 TTTAAATGTTAAAAAGCTCCTCTAACCAAAGGTAACAAACTTTAAATTCAAAA
6757005 TCTGATAGAA
Statistics
Matches: 363, Mismatches: 66, Indels: 28
0.79 0.14 0.06
Matches are distributed among these distances:
72 5 0.01
73 29 0.08
76 1 0.00
77 5 0.01
78 196 0.54
79 30 0.08
80 91 0.25
81 6 0.02
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.28
Consensus pattern (78 bp):
TTTAAATGTTAAAAAGCTCCTCTAACCAAAGGTAACAAACTTTAAATTCAAAAGCTCATTTAACC
AAAGGCAATAAAC
Found at i:6756740 original size:118 final size:117
Alignment explanation
Indices: 6756524--6756966 Score: 532
Period size: 118 Copynumber: 3.7 Consensus size: 117
6756514 AAGGCAATGG
* * * * *
6756524 ACTTTAAATTCAAAAGGCTCATTTAACCAAAGGCAACAAACTTTAAATGTTGAAATGCTTCTCTA
1 ACTTTAAATTCAAAA-GCTTATTTAACCAAA-GTAACAAACTTTAAATGTTAAAAGGCTCCTCTA
* ** * *
6756589 ACCAGAGGTAACGAACTTTAAATGTTGAAAAGCT-ACTCTCACCAGAGGTAACAA
64 ACCAGAGGCAATAAACTTTAAATGTTGAAAAGCTCA-TTTCACCAGAGGCAACAA
* ** * * * *
6756643 ACTTTAAATGTTAAAAAGCTCCTATCACCAAAGGTAACAAACTTTAAAT-TCAAAA-GCTCCTTT
1 ACTTTAAA--TTCAAAAGCTTATTTAACCAAA-GTAACAAACTTTAAATGTTAAAAGGCTCCTCT
* * * * * *
6756706 AACCAAAGACAATAAACTTTAAATGTTAAAAAGCTCTTTTCACTAGAGACAACAA
63 AACCAGAGGCAATAAACTTTAAATGTTGAAAAGCTCATTTCACCAGAGGCAACAA
* *
6756761 ACTTTAAATTCAAAAGCTTATTTAACCAAAGTCAATAAACTTTAAATGTTAAAAGGCTCATCTAA
1 ACTTTAAATTCAAAAGCTTATTTAACCAAAGT-AACAAACTTTAAATGTTAAAAGGCTCCTCTAA
* *
6756826 CCAGAGGCAACAAACTTTAAATGTTGAAAAGCTCATTTCACCAGAGGCAATAA
65 CCAGAGGCAATAAACTTTAAATGTTGAAAAGCTCATTTCACCAGAGGCAACAA
*
6756879 ACTTTAAATTCAAAAGCTTTTTTAACCAAATGTAACAAACTTTAAATGTTAAAAGGCTCCTCTAA
1 ACTTTAAATTCAAAAGCTTATTTAACCAAA-GTAACAAACTTTAAATGTTAAAAGGCTCCTCTAA
*
6756944 CCAGAGGCAATGAACTTTAAATG
65 CCAGAGGCAATAAACTTTAAATG
6756967 GCTCCTTTAA
Statistics
Matches: 275, Mismatches: 42, Indels: 15
0.83 0.13 0.05
Matches are distributed among these distances:
115 2 0.01
116 30 0.11
117 5 0.02
118 190 0.69
119 14 0.05
120 28 0.10
121 6 0.02
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.28
Consensus pattern (117 bp):
ACTTTAAATTCAAAAGCTTATTTAACCAAAGTAACAAACTTTAAATGTTAAAAGGCTCCTCTAAC
CAGAGGCAATAAACTTTAAATGTTGAAAAGCTCATTTCACCAGAGGCAACAA
Found at i:6756998 original size:33 final size:33
Alignment explanation
Indices: 6756927--6756998 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
6756917 ACTTTAAATG
* * **
6756927 TTAAAAGGCTCCTCTAACCAGAGGCAATGAACT
1 TTAAATGGCTCCTCTAACCAAAGGCAACAAACT
* *
6756960 TTAAATGGCTCCTTTAACCAAAGGTAACAAACT
1 TTAAATGGCTCCTCTAACCAAAGGCAACAAACT
6756993 TTAAAT
1 TTAAAT
6756999 TAAAAATCTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (33 bp):
TTAAATGGCTCCTCTAACCAAAGGCAACAAACT
Found at i:6765188 original size:168 final size:168
Alignment explanation
Indices: 6764908--6765229 Score: 491
Period size: 168 Copynumber: 1.9 Consensus size: 168
6764898 CACTGGTATT
* * *
6764908 AATTGTACCAAAAATATTTACACCTTTAACAGGTCGCAACCTTTCTTCCAAGAGATTTAACTTCT
1 AATTGTACAAAAAATATTTACACCTTTAACAGGTCACAACCTTTCTTCCAAGAGATCTAACTTCT
**
6764973 GTTGTGCATTTGTATTATCAGATTATTCGTGTGTGCCTTTCTTTAATTTCTCCTATTCTCTTAGG
66 ACTGTGCATTTGTATTATCAGATTATTCGTGTGTGCCTTTCTTTAATTTCTCCTATTCTCTTAGG
* *
6765038 TCATCTAAATTTGAGATCATACTGACTTTACTAGCATC
131 TCATCTAAATCTGAGACCATACTGACTTTACTAGCATC
* * * *
6765076 AATTGTACAAAAAATATTTACACTTTTAATAGTTCATAACCTTTCTTCCAAGAGATCTAACTTCT
1 AATTGTACAAAAAATATTTACACCTTTAACAGGTCACAACCTTTCTTCCAAGAGATCTAACTTCT
* * * * *
6765141 ACTGTGTATTTGTATTCTTAGATTGTTCGTGTGTGCCTTTTTTTAATTTCTCCTATTCTCTTAGG
66 ACTGTGCATTTGTATTATCAGATTATTCGTGTGTGCCTTTCTTTAATTTCTCCTATTCTCTTAGG
*
6765206 TCATCTAAATCTGGGACCATACTG
131 TCATCTAAATCTGAGACCATACTG
6765230 GGCTTAACAT
Statistics
Matches: 137, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
168 137 1.00
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.42
Consensus pattern (168 bp):
AATTGTACAAAAAATATTTACACCTTTAACAGGTCACAACCTTTCTTCCAAGAGATCTAACTTCT
ACTGTGCATTTGTATTATCAGATTATTCGTGTGTGCCTTTCTTTAATTTCTCCTATTCTCTTAGG
TCATCTAAATCTGAGACCATACTGACTTTACTAGCATC
Found at i:6769831 original size:3 final size:3
Alignment explanation
Indices: 6769823--6769851 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
6769813 AATTTATTGT
6769823 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
6769852 TCATAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:6769889 original size:18 final size:19
Alignment explanation
Indices: 6769858--6769893 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
6769848 AATATCATAA
6769858 AAAATAACATAAAAATCAT
1 AAAATAACATAAAAATCAT
6769877 AAAATAA-ATAAAAATCA
1 AAAATAACATAAAAATCA
6769894 AAATAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.19
Consensus pattern (19 bp):
AAAATAACATAAAAATCAT
Found at i:6770273 original size:52 final size:53
Alignment explanation
Indices: 6770217--6770328 Score: 129
Period size: 52 Copynumber: 2.1 Consensus size: 53
6770207 TTAGTGGTTG
** ** *
6770217 AAAAATTCAACGGTCATCGAAAAA-TTCAAATTTTTCCAGATTTCGGTGAC-CA
1 AAAAATTCAACAATCA-CGAAAAATTTCAAACATTTCCAGATTTCGATGACTCA
* * *
6770269 AAAAATTCAACAATCACTAAAAATTTCAAACATTTCTAGTTTTCGATGACTCA
1 AAAAATTCAACAATCACGAAAAATTTCAAACATTTCCAGATTTCGATGACTCA
6770322 AAAAATT
1 AAAAATT
6770329 TTTCAAAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
51 6 0.12
52 35 0.70
53 9 0.18
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.30
Consensus pattern (53 bp):
AAAAATTCAACAATCACGAAAAATTTCAAACATTTCCAGATTTCGATGACTCA
Found at i:6776338 original size:28 final size:28
Alignment explanation
Indices: 6776298--6776354 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
6776288 TCATATCACA
6776298 AGGTTTGGATAATAGATCCCTTTAATCT
1 AGGTTTGGATAATAGATCCCTTTAATCT
6776326 AGGTTTGGATAATAGATCCCTTTAATCT
1 AGGTTTGGATAATAGATCCCTTTAATCT
6776354 A
1 A
6776355 ACTTATGTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (28 bp):
AGGTTTGGATAATAGATCCCTTTAATCT
Found at i:6783045 original size:3 final size:3
Alignment explanation
Indices: 6783037--6783071 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
6783027 ATAAATATTT
*
6783037 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
6783072 TTTCTTTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:6784898 original size:42 final size:41
Alignment explanation
Indices: 6784821--6784902 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 41
6784811 TTAATATTGT
* * *
6784821 TTGTATTTTATTTTTTAATAAATAATTAAACAAAAATATGC
1 TTGTATTTTATTTTGTAATAAAGAATTAAAAAAAAATATGC
*
6784862 TTGTATTTTGATTTTGTAATAACGAA-TAGAAAAAAAATATG
1 TTGTATTTT-ATTTTGTAATAAAGAATTA-AAAAAAAATATG
6784903 ACTTATTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 11 0.31
42 24 0.69
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.43
Consensus pattern (41 bp):
TTGTATTTTATTTTGTAATAAAGAATTAAAAAAAAATATGC
Found at i:6786690 original size:3 final size:3
Alignment explanation
Indices: 6786682--6786739 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
6786672 ACATATTACA
6786682 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6786730 AAT AAT AAT A
1 AAT AAT AAT A
6786740 TTTACAAAGT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6788307 original size:21 final size:22
Alignment explanation
Indices: 6788274--6788321 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
6788264 TACTAAAAGC
6788274 ATTTATCTAAAAATATATT-AAA
1 ATTTATCTAAAAA-ATATTCAAA
*
6788296 ATTTAT-TAAAAAATCTTCAAA
1 ATTTATCTAAAAAATATTCAAA
6788317 ATTTA
1 ATTTA
6788322 CAAACTTGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 14 0.58
22 6 0.25
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (22 bp):
ATTTATCTAAAAAATATTCAAA
Found at i:6789049 original size:13 final size:13
Alignment explanation
Indices: 6789031--6789055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6789021 TTTATTTGTC
6789031 TAAAAAAATTAAT
1 TAAAAAAATTAAT
6789044 TAAAAAAATTAA
1 TAAAAAAATTAA
6789056 ACATATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
TAAAAAAATTAAT
Found at i:6815547 original size:25 final size:26
Alignment explanation
Indices: 6815519--6815567 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
6815509 ATCTATCAAT
**
6815519 TTAAATT-TTTTTATTAAAACTTTTA
1 TTAAATTATTTTTAAAAAAACTTTTA
6815544 TTAAATTATTTTTAAAAAAACTTT
1 TTAAATTATTTTTAAAAAAACTTT
6815568 GTAAATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (26 bp):
TTAAATTATTTTTAAAAAAACTTTTA
Found at i:6815555 original size:26 final size:25
Alignment explanation
Indices: 6815519--6815586 Score: 77
Period size: 23 Copynumber: 2.8 Consensus size: 25
6815509 ATCTATCAAT
**
6815519 TTAAATTTTTTTATTAAAACTTTTA
1 TTAAATTTTTTTAAAAAAACTTTTA
6815544 TTAAATTATTTTTAAAAAAAC-TTT-
1 TTAAATT-TTTTTAAAAAAACTTTTA
* *
6815568 GTAAATTTTATTAAAAAAA
1 TTAAATTTTTTTAAAAAAA
6815587 TTTCTTGTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.29
24 6 0.16
25 10 0.26
26 11 0.29
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (25 bp):
TTAAATTTTTTTAAAAAAACTTTTA
Found at i:6815594 original size:25 final size:23
Alignment explanation
Indices: 6815545--6815600 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
6815535 AAACTTTTAT
*
6815545 TAAATTATTTTTAAAAAAACTTTG
1 TAAATT-TTATTAAAAAAACTTTG
*
6815569 TAAATTTTATTAAAAAAATTTCTTG
1 TAAATTTTATTAAAAAAA-CT-TTG
6815594 TAAATTT
1 TAAATTT
6815601 GATCCTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 11 0.39
24 7 0.25
25 10 0.36
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (23 bp):
TAAATTTTATTAAAAAAACTTTG
Found at i:6820292 original size:122 final size:122
Alignment explanation
Indices: 6820062--6820315 Score: 303
Period size: 122 Copynumber: 2.1 Consensus size: 122
6820052 TTAAGGCATT
* **
6820062 TTAAATAATCCCTTTTAAAATATATTAACAAAATTTTTAAAGTGTTTTTAGACTGAAAACACCTT
1 TTAAATAATCCCTTTTAAAATATATTAACAAAATTTTTAAAGTATTTTTAGACCAAAAACACCTT
****
6820127 AAATAATACCCTTCAATTTTTTTTAGCTTATTTAAG-GTGTTTTTATCCAAAAATACC
66 AAATAATACCCTTCAATTTTAAAGAGCTTATTTAAGTGT-TTTTTATCCAAAAATACC
* * * * * * *
6820184 TTAAATAATCTCTTTTAAAATGTATTAACGAATTTTTTAAGGTATTTTTAGTCCAAAAACGCCTT
1 TTAAATAATCCCTTTTAAAATATATTAACAAAATTTTTAAAGTATTTTTAGACCAAAAACACCTT
* * * *
6820249 AAATAATACCTTTCAATTTTAAAGAGGCTTATTTAATGCTTTTTTTTGTCGAAAAATACC
66 AAATAATACCCTTCAATTTTAAAGA-GCTTATTTAA-G-TGTTTTTTATCCAAAAATACC
6820309 TTAAATA
1 TTAAATA
6820316 TTTCATTTCA
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
122 75 0.68
123 10 0.09
124 1 0.01
125 23 0.21
126 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (122 bp):
TTAAATAATCCCTTTTAAAATATATTAACAAAATTTTTAAAGTATTTTTAGACCAAAAACACCTT
AAATAATACCCTTCAATTTTAAAGAGCTTATTTAAGTGTTTTTTATCCAAAAATACC
Found at i:6821529 original size:109 final size:109
Alignment explanation
Indices: 6821348--6821544 Score: 297
Period size: 109 Copynumber: 1.8 Consensus size: 109
6821338 AAGTTTCTTG
* * * *
6821348 GATGCCACTTAGGTGCCAACATTATAACATATTTGGGCACATAAATAGAGCTTGTGCAAACAAAC
1 GATGCCACCTAGGTGCCAACATTACAACATATTTAGGCACATAAATAGAGCTTATGCAAACAAAC
6821413 TAAGGTTGCAGCAACAAAGGTGTTATTTTAGTGGAAGTTCTTTA
66 TAAGGTTGCAGCAACAAAGGTGTTATTTTAGTGGAAGTTCTTTA
* *
6821457 GATGCCACCTAGGTGCCAATATTACAACATATTTAGGCACATAGATAGAGCTTATGCAAACAAAC
1 GATGCCACCTAGGTGCCAACATTACAACATATTTAGGCACATAAATAGAGCTTATGCAAACAAA-
* * *
6821522 CT-AGGTTGTAGTAACGAAGGTGT
65 CTAAGGTTGCAGCAACAAAGGTGT
6821545 GGCAGCCAAA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
109 76 0.97
110 2 0.03
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (109 bp):
GATGCCACCTAGGTGCCAACATTACAACATATTTAGGCACATAAATAGAGCTTATGCAAACAAAC
TAAGGTTGCAGCAACAAAGGTGTTATTTTAGTGGAAGTTCTTTA
Found at i:6840625 original size:11 final size:11
Alignment explanation
Indices: 6840609--6840633 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6840599 ACCCTACATA
6840609 AAGGAGACCAG
1 AAGGAGACCAG
6840620 AAGGAGACCAG
1 AAGGAGACCAG
6840631 AAG
1 AAG
6840634 ACAAAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.36, T:0.00
Consensus pattern (11 bp):
AAGGAGACCAG
Found at i:6841961 original size:145 final size:146
Alignment explanation
Indices: 6841655--6842040 Score: 478
Period size: 145 Copynumber: 2.7 Consensus size: 146
6841645 TATTTTTAGG
* * * * * *
6841655 ATTTTAAA-ACATCAAAAATCATGAAATATTATAAAATTAGAATCTGAAAATTTTCATGAAATTC
1 ATTTTAAATGCATAAAAAATCATGAAATATTATAAAATTAGGATCTGAAAAGTTTCATAAAATTT
* ** *
6841719 CAAGCTCGAAAAA-ATCAAATTACGAAAATACTTCTAGAAGGATATTTTGATAATTTCACACTTA
66 CAAACTCGAAAAAGATCAAATTACGAAAATACCCCTAGAAGGATAATTTGATAATTTCACACTTA
*
6841783 ATGAAGTATTGATATA
131 ATGAAGTACTGATATA
*
6841799 ATTTTAAATGCATAAAAAATCATGAAATATTATAAAAATAGGATCTGAAAAGTTTCATAAAATTT
1 ATTTTAAATGCATAAAAAATCATGAAATATTATAAAATTAGGATCTGAAAAGTTTCATAAAATTT
* * * * *
6841864 CGATCTC-AAAAAGATCAAATTAAGAAAATACCCCTATAAGGATAATTTGATTATTTCACACTT-
66 CAAACTCGAAAAAGATCAAATTACGAAAATACCCCTAGAAGGATAATTTGATAATTTCACACTTA
* * * * *
6841927 TTGAGGTACTGCTGTG
131 ATGAAGTACTGATATA
* * *
6841943 ATTTTAAATGCATAAAAAATCATGAAATATTATAGAATTAAGG-TCT-AAAAGGTTTCACAAAAA
1 ATTTTAAATGCATAAAAAATCATGAAATATTATAAAATT-AGGATCTGAAAA-GTTTCATAAAAT
*
6842006 TTCAAACTCGAAAAAGGTCAAATTACGAAAATACC
64 TTCAAACTCGAAAAAGATCAAATTACGAAAATACC
6842041 TCATATGGGT
Statistics
Matches: 208, Mismatches: 29, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
143 4 0.02
144 80 0.38
145 124 0.60
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.31
Consensus pattern (146 bp):
ATTTTAAATGCATAAAAAATCATGAAATATTATAAAATTAGGATCTGAAAAGTTTCATAAAATTT
CAAACTCGAAAAAGATCAAATTACGAAAATACCCCTAGAAGGATAATTTGATAATTTCACACTTA
ATGAAGTACTGATATA
Found at i:6850087 original size:13 final size:13
Alignment explanation
Indices: 6850071--6850096 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6850061 TTTGGATTAG
6850071 TGTTTTTTTTTTT
1 TGTTTTTTTTTTT
6850084 TGTTTTTTTTTTT
1 TGTTTTTTTTTTT
6850097 GTACACAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (13 bp):
TGTTTTTTTTTTT
Found at i:6850091 original size:12 final size:12
Alignment explanation
Indices: 6850074--6850098 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6850064 GGATTAGTGT
6850074 TTTTTTTTTTTG
1 TTTTTTTTTTTG
6850086 TTTTTTTTTTTG
1 TTTTTTTTTTTG
6850098 T
1 T
6850099 ACACAATGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:6851374 original size:22 final size:22
Alignment explanation
Indices: 6851347--6851393 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
6851337 ATTACGTTTT
6851347 TCATTTCTCAAATTAGCCACTA
1 TCATTTCTCAAATTAGCCACTA
6851369 TCATTTCTCAAATTAGCCACTA
1 TCATTTCTCAAATTAGCCACTA
6851391 TCA
1 TCA
6851394 AATCCATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.36
Consensus pattern (22 bp):
TCATTTCTCAAATTAGCCACTA
Found at i:6853091 original size:6 final size:6
Alignment explanation
Indices: 6853082--6853128 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
6853072 AAATATTCAT
* * * *
6853082 TAAATA TAAATA TAAAAA TAAATA T-AATA TAAAAA TTAATA AAAATA
1 TAAATA TAAATA TAAATA TAAATA TAAATA TAAATA TAAATA TAAATA
6853129 AAGAATACTT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
5 5 0.15
6 28 0.85
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
TAAATA
Found at i:6853103 original size:18 final size:18
Alignment explanation
Indices: 6853082--6853128 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
6853072 AAATATTCAT
6853082 TAAATATAAATATAAAAA
1 TAAATATAAATATAAAAA
6853100 TAAATAT-AATATAAAAA
1 TAAATATAAATATAAAAA
* *
6853117 TTAATAAAAATA
1 TAAATATAAATA
6853129 AAGAATACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAATATAAATATAAAAA
Found at i:6853110 original size:17 final size:17
Alignment explanation
Indices: 6853082--6853135 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
6853072 AAATATTCAT
6853082 TAAATATAAATATAAAAA
1 TAAATAT-AATATAAAAA
6853100 TAAATATAATATAAAAA
1 TAAATATAATATAAAAA
* *
6853117 TTAATA-AAAATAAAGAA
1 TAAATATAATATAAA-AA
6853134 TA
1 TA
6853136 CTTTTTACGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.22
17 18 0.56
18 7 0.22
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (17 bp):
TAAATATAATATAAAAA
Found at i:6853366 original size:29 final size:29
Alignment explanation
Indices: 6853300--6853382 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 29
6853290 ATAAAAAAAA
* *
6853300 TTAAACTTTATCACTAT-TTTAAAAAAATT
1 TTAAACTTTAT-ATTATATTTAAATAAATT
*
6853329 TATATA-TTTATATTATATTTAAATAAATT
1 T-TAAACTTTATATTATATTTAAATAAATT
* *
6853358 CTTAAATTTTATTTTATATTTAAAT
1 -TTAAACTTTATATTATATTTAAAT
6853383 GCATTCTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
28 4 0.09
29 20 0.44
30 21 0.47
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (29 bp):
TTAAACTTTATATTATATTTAAATAAATT
Found at i:6853405 original size:23 final size:25
Alignment explanation
Indices: 6853366--6853452 Score: 85
Period size: 25 Copynumber: 3.7 Consensus size: 25
6853356 TTCTTAAATT
* *
6853366 TTATTTTATATT--TAAATGCATTC
1 TTATTTTATATTAAAAAATACATTC
6853389 TT-TTTT-TATTAAAAAATACATTC
1 TTATTTTATATTAAAAAATACATTC
* * *
6853412 TTATTTTATTTTAAAAAATAAATTA
1 TTATTTTATATTAAAAAATACATTC
*
6853437 TTATTTCA-ATTAAAAA
1 TTATTTTATATTAAAAA
6853453 GTTGACTTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.08
22 4 0.08
23 13 0.25
24 11 0.21
25 21 0.40
ACGTcount: A:0.41, C:0.06, G:0.01, T:0.52
Consensus pattern (25 bp):
TTATTTTATATTAAAAAATACATTC
Found at i:6859226 original size:20 final size:20
Alignment explanation
Indices: 6859133--6859226 Score: 50
Period size: 20 Copynumber: 4.3 Consensus size: 20
6859123 TATGTATTTC
*
6859133 ATATATATATTT-TTTAACAA
1 ATATATATTTTTATTTAA-AA
*
6859153 ATAAAT-TTTTTA-TTAAAA
1 ATATATATTTTTATTTAAAA
6859171 ATATTATTATTATTTTAAATTTATTAAA
1 ATA-TA-TA-T-TTTT--ATTTA--AAA
6859199 ATTAATATATTTTTATTTAAAA
1 A-T-ATATATTTTTATTTAAAA
6859221 ATATAT
1 ATATAT
6859227 TATACATATT
Statistics
Matches: 58, Mismatches: 3, Indels: 26
0.67 0.03 0.30
Matches are distributed among these distances:
18 5 0.09
19 9 0.16
20 10 0.17
21 1 0.02
22 5 0.09
23 4 0.07
24 5 0.09
25 1 0.02
26 7 0.12
27 1 0.02
28 6 0.10
29 3 0.05
30 1 0.02
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATATATTTTTATTTAAAA
Found at i:6859251 original size:21 final size:21
Alignment explanation
Indices: 6859189--6859251 Score: 56
Period size: 23 Copynumber: 2.9 Consensus size: 21
6859179 ATTATTTTAA
* *
6859189 ATTTATTAAAATTA-ATATAT
1 ATTTATAAAAATTATATACAT
*
6859209 TTTTATTTAAAAATATATTATACAT
1 ATTTA--TAAAAAT-TA-TATACAT
6859234 ATTTATAAAAATTATATA
1 ATTTATAAAAATTATATA
6859252 AGTATACATG
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
20 4 0.12
21 4 0.12
22 8 0.24
23 9 0.26
25 9 0.26
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
ATTTATAAAAATTATATACAT
Found at i:6859391 original size:6 final size:6
Alignment explanation
Indices: 6859377--6859415 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
6859367 AGATATTTAT
*
6859377 TAAACA TAAATA TAAATA TAAATA TAAATA T-AATA TAAA
1 TAAATA TAAATA TAAATA TAAATA TAAATA TAAATA TAAA
6859416 AATTAATAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (6 bp):
TAAATA
Found at i:6859724 original size:23 final size:24
Alignment explanation
Indices: 6859677--6859740 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 24
6859667 TTTTATATTT
6859677 AAATACATTCTT-TTGTTATT-AAA
1 AAATACATTCTTATT-TTATTAAAA
*
6859700 AAATACATTCTTATTTTGTTTAAAA
1 AAATACATTCTTATTTT-ATTAAAA
*
6859725 AAATAAATTCTTATTT
1 AAATACATTCTTATTT
6859741 CAGTTGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
23 14 0.39
24 4 0.11
25 18 0.50
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.48
Consensus pattern (24 bp):
AAATACATTCTTATTTTATTAAAA
Found at i:6859734 original size:25 final size:26
Alignment explanation
Indices: 6859687--6859740 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 26
6859677 AAATACATTC
* *
6859687 TTTTGTTATTAAAAAATACATTCTTA
1 TTTTGTTATAAAAAAATAAATTCTTA
6859713 TTTTGTT-TAAAAAAATAAATTCTTA
1 TTTTGTTATAAAAAAATAAATTCTTA
6859738 TTT
1 TTT
6859741 CAGTTGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.52
Consensus pattern (26 bp):
TTTTGTTATAAAAAAATAAATTCTTA
Found at i:6859750 original size:26 final size:25
Alignment explanation
Indices: 6859697--6859750 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
6859687 TTTTGTTATT
* * *
6859697 AAAAAATACATTCTTATTTTGTTTA
1 AAAAAATAAATTCTTATTTAGTTGA
6859722 AAAAAATAAATTCTTATTTCAGTTGA
1 AAAAAATAAATTCTTATTT-AGTTGA
6859748 AAA
1 AAA
6859751 GTTGACTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.46, C:0.07, G:0.06, T:0.41
Consensus pattern (25 bp):
AAAAAATAAATTCTTATTTAGTTGA
Found at i:6861448 original size:20 final size:20
Alignment explanation
Indices: 6861423--6861483 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
6861413 TTTCACAAAG
6861423 ACCAATACAAACACATTTCA
1 ACCAATACAAACACATTTCA
* *
6861443 ACCAATACAAACATATTCCA
1 ACCAATACAAACACATTTCA
*
6861463 ACCAATATAAACACATTTCA
1 ACCAATACAAACACATTTCA
6861483 A
1 A
6861484 ATATCCTAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (20 bp):
ACCAATACAAACACATTTCA
Found at i:6870568 original size:30 final size:31
Alignment explanation
Indices: 6870532--6870592 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
6870522 CAAATAAATT
6870532 TTTATTAAAAAT-ATAAATTATTATTTTAAA
1 TTTATTAAAAATAATAAATTATTATTTTAAA
* * * *
6870562 TTTATTAGAATTAATATATTTTTATTTTAAA
1 TTTATTAAAAATAATAAATTATTATTTTAAA
6870593 ATAAATTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (31 bp):
TTTATTAAAAATAATAAATTATTATTTTAAA
Found at i:6870630 original size:22 final size:21
Alignment explanation
Indices: 6870587--6870630 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
6870577 ATATTTTTAT
*
6870587 TTTAAAATAAATTAATACATA
1 TTTAAAATAAATTAATAAATA
6870608 TTTATAAA-AAATTATATAAATA
1 TTTA-AAATAAATTA-ATAAATA
6870630 T
1 T
6870631 ACATGATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTTAAAATAAATTAATAAATA
Found at i:6873474 original size:7 final size:7
Alignment explanation
Indices: 6873462--6873492 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
6873452 AACAGGGTGG
6873462 GAACTGA
1 GAACTGA
6873469 GAACTGA
1 GAACTGA
6873476 GAACTGA
1 GAACTGA
6873483 GAACTGA
1 GAACTGA
6873490 GAA
1 GAA
6873493 TCTTCATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.45, C:0.13, G:0.29, T:0.13
Consensus pattern (7 bp):
GAACTGA
Found at i:6874434 original size:52 final size:52
Alignment explanation
Indices: 6874348--6874504 Score: 197
Period size: 52 Copynumber: 3.0 Consensus size: 52
6874338 TATAACCATA
* * * * *
6874348 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTGCCTATTAAGAATCTCTTTTCTCTTAGAATTCTTCTCCTGCAAGT
* *
6874400 CAAACTTGCCTATTAAGAATCTCTTTTCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCTCTTTTCTCTTAGAATTCTTCTCCTGCAAGT
* * * * **
6874452 CAAACTTACCTATTAAAAATCTCCTTTCTCTTGGAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCTCTTTTCTCTTAGAATTCTTCTCCTGCAAGT
6874504 C
1 C
6874505 TTCTTGTCCA
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 92 1.00
ACGTcount: A:0.25, C:0.25, G:0.09, T:0.40
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCTCTTTTCTCTTAGAATTCTTCTCCTGCAAGT
Found at i:6874822 original size:25 final size:25
Alignment explanation
Indices: 6874790--6874917 Score: 89
Period size: 25 Copynumber: 5.1 Consensus size: 25
6874780 CAAACCATGT
* *
6874790 TCTTCCCACATCTCGAACCTTCAGC
1 TCTTCTCACGTCTCGAACCTTCAGC
* * **
6874815 TCTTCCCACGTCTTGAA-CTTTTGAC
1 TCTTCTCACGTCTCGAACCTTCAG-C
* *
6874840 TCTTCTCACGTTTCGAACCTTCAAC
1 TCTTCTCACGTCTCGAACCTTCAGC
* ** * * *
6874865 TCTTTTCATATCTTGAATCTTCAAC
1 TCTTCTCACGTCTCGAACCTTCAGC
*
6874890 TCTTCTCACGT-TCCAAACCTTCAGC
1 TCTTCTCACGTCT-CGAACCTTCAGC
6874915 TCT
1 TCT
6874918 GATACCACTT
Statistics
Matches: 77, Mismatches: 23, Indels: 6
0.73 0.22 0.06
Matches are distributed among these distances:
24 5 0.06
25 69 0.90
26 3 0.04
ACGTcount: A:0.20, C:0.35, G:0.08, T:0.38
Consensus pattern (25 bp):
TCTTCTCACGTCTCGAACCTTCAGC
Found at i:6874856 original size:50 final size:50
Alignment explanation
Indices: 6874802--6874917 Score: 135
Period size: 50 Copynumber: 2.3 Consensus size: 50
6874792 TTCCCACATC
* **
6874802 TCGAACCTTCAGCTCTTCCCACGTCTTGAA-CTTTTGACTCTTCTCACGTT
1 TCGAACCTTCAGCTCTTCCCACATCTTGAATC-TTCAACTCTTCTCACGTT
* ** *
6874852 TCGAACCTTCAACTCTTTTCATATCTTGAATCTTCAACTCTTCTCACGTT
1 TCGAACCTTCAGCTCTTCCCACATCTTGAATCTTCAACTCTTCTCACGTT
* *
6874902 CCAAACCTTCAGCTCT
1 TCGAACCTTCAGCTCT
6874918 GATACCACTT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 54 0.98
51 1 0.02
ACGTcount: A:0.20, C:0.34, G:0.09, T:0.38
Consensus pattern (50 bp):
TCGAACCTTCAGCTCTTCCCACATCTTGAATCTTCAACTCTTCTCACGTT
Found at i:6875540 original size:52 final size:52
Alignment explanation
Indices: 6875484--6875606 Score: 158
Period size: 52 Copynumber: 2.4 Consensus size: 52
6875474 ATCCTCTTAA
* * *
6875484 AATTCTTCTCCTGTAAGTCAAACTTGCCTATTAAGAAT-TTCTTTTCTTTTAG
1 AATTCTTCTCCTGCAAGTCAAACTTACCTATTAAAAATCTTC-TTTCTTTTAG
* *
6875536 AATTCTTCTCTTGCAAGTCAAACTTACCTATTAAAAATCTTCTTTCTTTTGG
1 AATTCTTCTCCTGCAAGTCAAACTTACCTATTAAAAATCTTCTTTCTTTTAG
* **
6875588 AAGTCTTCTTTTGCAAGTC
1 AATTCTTCTCCTGCAAGTC
6875607 TTCTTGTCCA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
52 60 0.95
53 3 0.05
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.45
Consensus pattern (52 bp):
AATTCTTCTCCTGCAAGTCAAACTTACCTATTAAAAATCTTCTTTCTTTTAG
Found at i:6875598 original size:14 final size:14
Alignment explanation
Indices: 6875579--6875611 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
6875569 AAAATCTTCT
*
6875579 TTCTTTTGGAAGTC
1 TTCTTTTGCAAGTC
6875593 TTCTTTTGCAAGTC
1 TTCTTTTGCAAGTC
6875607 TTCTT
1 TTCTT
6875612 GTCCATCAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.18, G:0.15, T:0.55
Consensus pattern (14 bp):
TTCTTTTGCAAGTC
Found at i:6875647 original size:11 final size:11
Alignment explanation
Indices: 6875631--6875672 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
6875621 GCAATATCTG
6875631 ACAAATCTCAA
1 ACAAATCTCAA
*
6875642 ACAAATCTCTA
1 ACAAATCTCAA
6875653 ACAAATCTCAA
1 ACAAATCTCAA
6875664 ACAAATCTC
1 ACAAATCTC
6875673 TTATGGGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:6875656 original size:22 final size:22
Alignment explanation
Indices: 6875631--6875673 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
6875621 GCAATATCTG
6875631 ACAAATCTCAAACAAATCTCTA
1 ACAAATCTCAAACAAATCTCTA
6875653 ACAAATCTCAAACAAATCTCT
1 ACAAATCTCAAACAAATCTCT
6875674 TATGGGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (22 bp):
ACAAATCTCAAACAAATCTCTA
Found at i:6875945 original size:25 final size:25
Alignment explanation
Indices: 6875913--6876040 Score: 96
Period size: 25 Copynumber: 5.1 Consensus size: 25
6875903 CAAACCATGT
*
6875913 TCTTCCCACATCTCGAACCTTCAGC
1 TCTTCCCACGTCTCGAACCTTCAGC
* **
6875938 TCTTCCCACGTCTTGAA-CTTTTGAC
1 TCTTCCCACGTCTCGAACCTTCAG-C
** *
6875963 TCTTTTCACGTTTCGAACCTTCAGC
1 TCTTCCCACGTCTCGAACCTTCAGC
* ** * * *
6875988 TCTTTCCATATCTTGAATCTTCAAC
1 TCTTCCCACGTCTCGAACCTTCAGC
* * *
6876013 TCTTCTCACGTTTCAAACCTTCAGC
1 TCTTCCCACGTCTCGAACCTTCAGC
6876038 TCT
1 TCT
6876041 GATACCACTT
Statistics
Matches: 75, Mismatches: 26, Indels: 4
0.71 0.25 0.04
Matches are distributed among these distances:
24 4 0.05
25 67 0.89
26 4 0.05
ACGTcount: A:0.19, C:0.34, G:0.09, T:0.38
Consensus pattern (25 bp):
TCTTCCCACGTCTCGAACCTTCAGC
Found at i:6875983 original size:50 final size:50
Alignment explanation
Indices: 6875925--6876040 Score: 153
Period size: 50 Copynumber: 2.3 Consensus size: 50
6875915 TTCCCACATC
* ** *
6875925 TCGAACCTTCAGCTCTTCCCACGTCTTGAA-CTTTTGACTCTTTTCACGTT
1 TCGAACCTTCAGCTCTTCCCACATCTTGAATC-TTCAACTCTTCTCACGTT
* *
6875975 TCGAACCTTCAGCTCTTTCCATATCTTGAATCTTCAACTCTTCTCACGTT
1 TCGAACCTTCAGCTCTTCCCACATCTTGAATCTTCAACTCTTCTCACGTT
*
6876025 TCAAACCTTCAGCTCT
1 TCGAACCTTCAGCTCT
6876041 GATACCACTT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 57 0.98
51 1 0.02
ACGTcount: A:0.19, C:0.33, G:0.09, T:0.39
Consensus pattern (50 bp):
TCGAACCTTCAGCTCTTCCCACATCTTGAATCTTCAACTCTTCTCACGTT
Found at i:6876725 original size:52 final size:52
Alignment explanation
Indices: 6876606--6876735 Score: 147
Period size: 52 Copynumber: 2.5 Consensus size: 52
6876596 AATCCCTCTC
* * * *
6876606 CTCTT-AGAATTCTTCTCCTGTAAGTCAAACTTGCCTATTAAGAACCTCTTT
1 CTCTTGAGAATTCTTCTCTTGCAAGTCAAACTTACCTATTAAAAACCTCTTT
* * * * *
6876657 TTTTTTAGAATCCTTCTCTTGCAAGTCAAACTTACCTATTAAAAATCTTCTTT
1 CTCTTGAGAATTCTTCTCTTGCAAGTCAAACTTACCTATTAAAAA-CCTCTTT
*
6876710 CTCTTGA-AATTCTTCTTTTGCAAGTC
1 CTCTTGAGAATTCTTCTCTTGCAAGTC
6876736 TTCTTGTCCA
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
51 3 0.05
52 51 0.80
53 10 0.16
ACGTcount: A:0.25, C:0.23, G:0.08, T:0.43
Consensus pattern (52 bp):
CTCTTGAGAATTCTTCTCTTGCAAGTCAAACTTACCTATTAAAAACCTCTTT
Found at i:6876776 original size:11 final size:11
Alignment explanation
Indices: 6876760--6876790 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
6876750 GCAATATCTG
6876760 ACAAATCTCAA
1 ACAAATCTCAA
6876771 ACAAATCTCAA
1 ACAAATCTCAA
6876782 ACAAATCTC
1 ACAAATCTC
6876791 TTATGAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:6878282 original size:16 final size:17
Alignment explanation
Indices: 6878253--6878290 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
6878243 CTTTAGTCTA
6878253 CTTTACGTCAAG-TTAC
1 CTTTACGTCAAGTTTAC
* *
6878269 CTTTATGTCTAGTTTAC
1 CTTTACGTCAAGTTTAC
6878286 CTTTA
1 CTTTA
6878291 ATCAAAATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (17 bp):
CTTTACGTCAAGTTTAC
Found at i:6878380 original size:20 final size:21
Alignment explanation
Indices: 6878346--6878392 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
6878336 ATAAGTGATG
6878346 AGTCATCTTTACTTTAT-TAA
1 AGTCATCTTTACTTTATATAA
6878366 AGTCA-CTTTAGCTTTATATAA
1 AGTCATCTTTA-CTTTATATAA
6878387 AGTCAT
1 AGTCAT
6878393 TTGTAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.21
20 11 0.46
21 8 0.33
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.45
Consensus pattern (21 bp):
AGTCATCTTTACTTTATATAA
Found at i:6884035 original size:22 final size:22
Alignment explanation
Indices: 6883989--6884035 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
6883979 GAGCAACTTT
*
6883989 TATTTAAAAATATATTAATACA
1 TATTTAAAAATATATTAATAAA
6884011 TATTTATAAAA-A-ATTATATAAA
1 TATTTA-AAAATATATTA-ATAAA
6884033 TAT
1 TAT
6884036 ACATGCTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 4 0.18
22 14 0.64
23 4 0.18
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TATTTAAAAATATATTAATAAA
Found at i:6884176 original size:18 final size:18
Alignment explanation
Indices: 6884155--6884200 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
6884145 AAATATTTAT
6884155 TAAATATAAATATAAAAA
1 TAAATATAAATATAAAAA
*
6884173 TAAATAT-AATATACAAA
1 TAAATATAAATATAAAAA
* *
6884190 TTAATAAAAAT
1 TAAATATAAAT
6884201 TAAGAATCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAATATAAATATAAAAA
Found at i:6884178 original size:12 final size:12
Alignment explanation
Indices: 6884125--6884181 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
6884115 TAAATATTTT
*
6884125 TAAAAATAAAAA
1 TAAATATAAAAA
*
6884137 TAAAT-TTAAAA
1 TAAATATAAAAA
** *
6884148 TATTTATTAAATA
1 TAAATA-TAAAAA
6884161 TAAATATAAAAA
1 TAAATATAAAAA
6884173 TAAATATAA
1 TAAATATAA
6884182 TATACAAATT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
11 8 0.24
12 18 0.53
13 8 0.24
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAATATAAAAA
Found at i:6884193 original size:36 final size:36
Alignment explanation
Indices: 6884125--6884193 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 36
6884115 TAAATATTTT
* ***
6884125 TAAAAATAAAAATAAATTTAAAATATTTATTAAATA
1 TAAAAATAAAAATAAATATAAAATACAAATTAAATA
* *
6884161 TAAATATAAAAATAAATATAATATACAAATTAA
1 TAAAAATAAAAATAAATATAAAATACAAATTAA
6884194 TAAAAATTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 27 1.00
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (36 bp):
TAAAAATAAAAATAAATATAAAATACAAATTAAATA
Found at i:6884482 original size:23 final size:25
Alignment explanation
Indices: 6884453--6884516 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
6884443 TTTTATATTC
6884453 AAATACATTCTT-TTTT-AATTAAA
1 AAATACATTCTTATTTTGAATTAAA
**
6884476 AAATACATTCTTATTTTGTTTTAAA
1 AAATACATTCTTATTTTGAATTAAA
*
6884501 AAATAAATTCTTATTT
1 AAATACATTCTTATTT
6884517 CGGTTGAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 12 0.33
24 4 0.11
25 20 0.56
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.50
Consensus pattern (25 bp):
AAATACATTCTTATTTTGAATTAAA
Found at i:6884526 original size:25 final size:25
Alignment explanation
Indices: 6884473--6884526 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
6884463 TTTTTTAATT
* * * *
6884473 AAAAAATACATTCTTATTTTGTTTT
1 AAAAAATAAATTCTTATTTCGGTTG
6884498 AAAAAATAAATTCTTATTTCGGTTG
1 AAAAAATAAATTCTTATTTCGGTTG
6884523 AAAA
1 AAAA
6884527 GTTGACTTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (25 bp):
AAAAAATAAATTCTTATTTCGGTTG
Found at i:6891196 original size:16 final size:16
Alignment explanation
Indices: 6891177--6891209 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6891167 TCCATTTAGT
*
6891177 ATTTGCTGCATTATCA
1 ATTTACTGCATTATCA
6891193 ATTTACTGCATTATCA
1 ATTTACTGCATTATCA
6891209 A
1 A
6891210 ACCAAATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.42
Consensus pattern (16 bp):
ATTTACTGCATTATCA
Found at i:6892599 original size:383 final size:379
Alignment explanation
Indices: 6891858--6892600 Score: 781
Period size: 383 Copynumber: 1.9 Consensus size: 379
6891848 TTCATTTAAC
*
6891858 CCCTCAAATTTTTTAAAGGAATTTATTGAAGGTATTTTTTTTTACAGAAAATACCTTCAATAATC
1 CCCTCAAATTTTTTAAAGAAATTTATTGAAGGTA--TTTTTTTACAGAAAATACCTTCAATAATC
* * ** *
6891923 CTTTATATTTTTATTAGGTAAATATCAGTGAAGGTAGTTTTCTACAAAAAATGCATTCAATAATC
64 CTCTATATTTTTATCAGAAAAATATCAGTGAAGGCAGTTTTCTACAAAAAATGCATTCAATAATC
* * * * * *
6891988 TTCTTAAATTTTGACAATGATATTATTATAGGCGTTTTTTACTAAAAACGTCTTCATTAATCCCT
129 -TCTTAAATTTTAACAATGAGATTATTATAGGCATTTTTTACTAAAAACGTCATCACTAATCCAT
* * ** * *
6892053 TGAAATTTTTTGAATGAATTTATTAAAGGTATTTTTTTGCAGAAAACACGTTCAATAATACCATC
193 TCAAATTTTTTAAAAAAATTTATTAAAGGTATTTTTTTGCAGAAAACACCTTCAATAATACCATA
* **
6892118 AATTTCTATAAGGAGAATATTAATGAAAGTGATTTTCTATCAAAAATACCTTTGATAATCCTCTT
258 AATTTCTATAAGGAGAATATTAATGAAAGTGATTTTCTATCAAAAACACCTTCAATAATCCTCTT
** * *
6892183 AAAATTTGATGAGTAGATTATTATAAGCATTTTTTACTACAAACACATTTACTAATT
323 AAAATTTGATGAAAAAATTATTAGAAGCATTTTTTACTACAAACACATTTACTAATT
* * * * *
6892240 CCCTTAAATTTTTTGAAA-AAATTTATTGAAGGTA-TTTTTTGCATAATATGCCTTCAATAATCC
1 CCCTCAAATTTTTT-AAAGAAATTTATTGAAGGTATTTTTTTACAGAAAATACCTTCAATAATCC
* **
6892303 TCTCTATTTTTATCAGAAAAATATCAGTGAAGGCAGTTTTCTACAAAAAAATGTTGTTTTCAATA
65 TCTATATTTTTATCAGAAAAATATCAGTGAAGGCAGTTTTCTAC-AAAAAA---TGCATTCAATA
* *
6892368 ATC-CGTTAAAATTTTAACTATGAGATTATTATAGGCATTTTTTACTAAAAATGTCATCACTAAT
126 ATCTC-TT-AAATTTTAACAATGAGATTATTATAGGCATTTTTTACTAAAAACGTCATCACTAAT
* * * * ** * *
6892432 CCATTCAAATTTTTTTAAAAAAATTTATTGAAGG-CTTTTTTTGTATAGTACGCCTTCAATAATC
189 CCATTCAAA-TTTTTTAAAAAAATTTATTAAAGGTATTTTTTTGCAGAAAACACCTTCAATAATA
* * * *
6892496 CTCTTAAATTT-TAATGAGGAG-AT-TT-TTGAAAGT-ATTTT-TGA-CTAAAAACGCCTTCAAT
253 C-CATAAATTTCT-ATAAGGAGAATATTAATGAAAGTGATTTTCT-ATC-AAAAACACCTTCAAT
** *
6892554 AATCTCCTCTTTAAAATTTTTTTAAAAAATTATT-GAAGACATTTTTT
314 AA--TCCTC-TTAAAATTTGATGAAAAAATTATTAGAAG-CATTTTTT
6892601 TACAAAACGC
Statistics
Matches: 295, Mismatches: 50, Indels: 31
0.78 0.13 0.08
Matches are distributed among these distances:
379 65 0.22
380 25 0.08
381 8 0.03
382 40 0.14
383 123 0.42
384 34 0.12
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (379 bp):
CCCTCAAATTTTTTAAAGAAATTTATTGAAGGTATTTTTTTACAGAAAATACCTTCAATAATCCT
CTATATTTTTATCAGAAAAATATCAGTGAAGGCAGTTTTCTACAAAAAATGCATTCAATAATCTC
TTAAATTTTAACAATGAGATTATTATAGGCATTTTTTACTAAAAACGTCATCACTAATCCATTCA
AATTTTTTAAAAAAATTTATTAAAGGTATTTTTTTGCAGAAAACACCTTCAATAATACCATAAAT
TTCTATAAGGAGAATATTAATGAAAGTGATTTTCTATCAAAAACACCTTCAATAATCCTCTTAAA
ATTTGATGAAAAAATTATTAGAAGCATTTTTTACTACAAACACATTTACTAATT
Found at i:6898917 original size:23 final size:23
Alignment explanation
Indices: 6898878--6898930 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
6898868 AAGGGAGGGG
*
6898878 AAAAAAAGGAAAGGAAA-GGACAA
1 AAAAAAAGGAAAGGAAACAGA-AA
*
6898901 AAAAAAAGTAATA-GAAACAGAAA
1 AAAAAAAGGAA-AGGAAACAGAAA
6898924 AAAAAAA
1 AAAAAAA
6898931 TTTTGTTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.75, C:0.04, G:0.17, T:0.04
Consensus pattern (23 bp):
AAAAAAAGGAAAGGAAACAGAAA
Found at i:6903566 original size:21 final size:22
Alignment explanation
Indices: 6903537--6903577 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
6903527 GGGTTTTGAT
*
6903537 TTTAGGGTTTAGAAATTTTTTA
1 TTTAGGGTTTAGAAAGTTTTTA
*
6903559 TTTA-GGTTTTGAAAGTTTT
1 TTTAGGGTTTAGAAAGTTTT
6903578 GGGGTTTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (22 bp):
TTTAGGGTTTAGAAAGTTTTTA
Found at i:6903605 original size:15 final size:15
Alignment explanation
Indices: 6903523--6903696 Score: 81
Period size: 15 Copynumber: 11.3 Consensus size: 15
6903513 GTATGGAAGG
6903523 TTTAGGGTTTTG-AT
1 TTTAGGGTTTTGAAT
*
6903537 TTTAGGGTTTAGAAATTT
1 TTTAGGGTTTTG-AA--T
*
6903555 TTTATTTAGGTTTTGAAAGT
1 TTTA---GGGTTTTG-AA-T
* *
6903575 TTT-GGGGTTTGGAT
1 TTTAGGGTTTTGAAT
6903589 TTTAGGGTTTTGAAT
1 TTTAGGGTTTTGAAT
* ** *
6903604 TTAAAAGTTTAG-AT
1 TTTAGGGTTTTGAAT
*
6903618 TTTAGGGTTTTGGAT
1 TTTAGGGTTTTGAAT
* * *
6903633 TTCAGGGGTTTGGAT
1 TTTAGGGTTTTGAAT
*
6903648 TTTAAGGTTTT-AGAT
1 TTTAGGGTTTTGA-AT
*
6903663 TTTAAGGGTTTAGAAAT
1 TTT-AGGGTTTTG-AAT
6903680 TTT-GGGTTTTG-AT
1 TTTAGGGTTTTGAAT
6903693 TTTA
1 TTTA
6903697 ATTTATTTTT
Statistics
Matches: 120, Mismatches: 26, Indels: 28
0.69 0.15 0.16
Matches are distributed among these distances:
13 5 0.04
14 25 0.21
15 53 0.44
16 13 0.11
17 5 0.04
18 6 0.05
20 4 0.03
21 9 0.08
ACGTcount: A:0.22, C:0.01, G:0.26, T:0.51
Consensus pattern (15 bp):
TTTAGGGTTTTGAAT
Found at i:6903695 original size:30 final size:30
Alignment explanation
Indices: 6903579--6903697 Score: 118
Period size: 30 Copynumber: 4.0 Consensus size: 30
6903569 GAAAGTTTTG
* *
6903579 GGGTTTGGATTTTAGGGTTTT-GAATTTAA
1 GGGTTTAGATTTTAGGGTTTTAGATTTTAA
** * * *
6903608 AAGTTTAGATTTTAGGGTTTTGGATTTCAG
1 GGGTTTAGATTTTAGGGTTTTAGATTTTAA
* *
6903638 GGGTTTGGATTTTAAGGTTTTAGATTTTAA
1 GGGTTTAGATTTTAGGGTTTTAGATTTTAA
6903668 GGGTTTAGAAATTTT-GGGTTTT-GATTTTAA
1 GGGTTTAG--ATTTTAGGGTTTTAGATTTTAA
6903698 TTTATTTTTT
Statistics
Matches: 72, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
29 18 0.25
30 43 0.60
31 6 0.08
32 5 0.07
ACGTcount: A:0.23, C:0.01, G:0.28, T:0.49
Consensus pattern (30 bp):
GGGTTTAGATTTTAGGGTTTTAGATTTTAA
Found at i:6905852 original size:91 final size:87
Alignment explanation
Indices: 6905663--6905934 Score: 287
Period size: 88 Copynumber: 3.1 Consensus size: 87
6905653 TGTTCGAAGA
* * * * * ** * *
6905663 TCTTACAGAATCGA-CTGGGACAACACCGCAAGTCAAAAAATAAAGAATCAATCAAAATATCACC
1 TCTTATAGAATCGATC-GAGACAACACCGTAAGTCAAAAAATAAAAAATAAATCAGGACAACACC
* *
6905727 GCAAATCAAAATTATGCCTAAAGG
65 GCGAATCAAAATTATGCC-AGAGG
* * * * *
6905751 TTTTATAGAATCGATCGGGACAATACCGTAAGTCAAAAAATAAAAAA-AAATCGATTGGGATAAT
1 TCTTATAGAATCGATCGAGACAACACCGTAAGTCAAAAAATAAAAAATAAATC-A---GGACAAC
* *
6905815 ACTGCGAATCAAAATTATGTCCAGAGA
62 ACCGCGAATCAAAATTATG-CCAGAGG
*
6905842 TCTTATAGAATCGATCGAGACAACACCGTAAGTCAAAAAATAAAAAATCAATCAGGACAACACCG
1 TCTTATAGAATCGATCGAGACAACACCGTAAGTCAAAAAATAAAAAATAAATCAGGACAACACCG
6905907 CGAATCAAAATTATGCCCAGAGG
66 CGAATCAAAATTATG-CCAGAGG
6905930 TCTTA
1 TCTTA
6905935 GAAATCATAT
Statistics
Matches: 154, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
87 4 0.03
88 75 0.49
89 1 0.01
91 68 0.44
92 6 0.04
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.21
Consensus pattern (87 bp):
TCTTATAGAATCGATCGAGACAACACCGTAAGTCAAAAAATAAAAAATAAATCAGGACAACACCG
CGAATCAAAATTATGCCAGAGG
Found at i:6905998 original size:110 final size:110
Alignment explanation
Indices: 6905839--6906044 Score: 342
Period size: 110 Copynumber: 1.9 Consensus size: 110
6905829 TTATGTCCAG
* *
6905839 AGATCTTATAGAATCGATCGAGACAACACCGTAAGTCAAAAAATAAAAAATCAATC-AGGACAAC
1 AGATCTTACAGAATCGATCGAGACAACACCGCAAGTCAAAAAATAAAAAATCAATCGA-GACAAC
6905903 ACCGCGAATCAAAATTATGCCCAGAGGTCTTAGAAATCATATCCGA
65 ACCGCGAATCAAAATTATGCCCAGAGGTCTTAGAAATCATATCCGA
* * *
6905949 AGATCTTACAGAATCGATCGGGACAACACCGCAAGTTAAAAAATAAAAAATCGATCGAGACAACA
1 AGATCTTACAGAATCGATCGAGACAACACCGCAAGTCAAAAAATAAAAAATCAATCGAGACAACA
*
6906014 CCGCGAATCAAAATTATGCCCGGAGGTCTTA
66 CCGCGAATCAAAATTATGCCCAGAGGTCTTA
6906045 CAGAATCGAT
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
110 88 0.99
111 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.18
Consensus pattern (110 bp):
AGATCTTACAGAATCGATCGAGACAACACCGCAAGTCAAAAAATAAAAAATCAATCGAGACAACA
CCGCGAATCAAAATTATGCCCAGAGGTCTTAGAAATCATATCCGA
Found at i:6906055 original size:198 final size:198
Alignment explanation
Indices: 6905757--6906241 Score: 573
Period size: 198 Copynumber: 2.4 Consensus size: 198
6905747 AAGGTTTTAT
* * * * * *
6905757 AGAATCGATCGGGACAATACCGTAAGTCAAAAAATAAAAAAAAATCGATTGGGATAATACTGCGA
1 AGAATCGATCGGGACAACACCGCAAGTCAAAAAAT---AAAAAATCGATTGAGACAACACCGCGA
* * * * * *
6905822 ATCAAAATTATGTCCAGAGATCTTATAGAATCGATCGAGACAACACCGTAAGTCAAAAAATAAAA
63 ATCAAAATTATGCCCGGAGGTCTTACAGAATCGATCGAAACAACACCGCAAGTCAAAAAATAAAA
* * * * *
6905887 AATCAATCAGGACAACACCGCGAATCAAAATTATGCCCAGA-GGTCTTAGAA-ATCATATCCG-A
128 AATCAATCAGAACAACACCACAAATCAAAATTATGCAC-GATGGTCTTA-AAGATCATACCCGAA
6905949 AGATCTTAC
191 AG-TCTTAC
* *
6905958 AGAATCGATCGGGACAACACCGCAAGTTAAAAAATAAAAAATCGATCGAGACAACACCGCGAATC
1 AGAATCGATCGGGACAACACCGCAAGTCAAAAAATAAAAAATCGATTGAGACAACACCGCGAATC
*
6906023 AAAATTATGCCCGGAGGTCTTACAGAATCGATCGAAATAACACCGCAAGTCAAAAAATAAAAAAT
66 AAAATTATGCCCGGAGGTCTTACAGAATCGATCGAAACAACACCGCAAGTCAAAAAATAAAAAAT
* * * *
6906088 CGATCAGAACAATACTACAAATCAAAATTATGCACGATGGTCTTAAAGATTATACCCGAAAGTCT
131 CAATCAGAACAACACCACAAATCAAAATTATGCACGATGGTCTTAAAGATCATACCCGAAAGTCT
6906153 TAC
196 TAC
* * * * * * * * **
6906156 AAAATC-AACAGGATAACATCGCGAGTCAAAAAATAAAAAATCGATTAAGACAACATCGTAAATC
1 AGAATCGATCGGGACAACACCGCAAGTCAAAAAATAAAAAATCGATTGAGACAACACCGCGAATC
*
6906220 AAAATTATGCCTGGAGGTCTTA
66 AAAATTATGCCCGGAGGTCTTA
6906242 AAGATTATGC
Statistics
Matches: 244, Mismatches: 37, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
197 72 0.30
198 137 0.56
199 3 0.01
201 32 0.13
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.20
Consensus pattern (198 bp):
AGAATCGATCGGGACAACACCGCAAGTCAAAAAATAAAAAATCGATTGAGACAACACCGCGAATC
AAAATTATGCCCGGAGGTCTTACAGAATCGATCGAAACAACACCGCAAGTCAAAAAATAAAAAAT
CAATCAGAACAACACCACAAATCAAAATTATGCACGATGGTCTTAAAGATCATACCCGAAAGTCT
TAC
Found at i:6906066 original size:88 final size:88
Alignment explanation
Indices: 6905952--6906120 Score: 250
Period size: 88 Copynumber: 1.9 Consensus size: 88
6905942 TATCCGAAGA
** *
6905952 TCTTACAGAATCGATCGGGACAACACCGCAAGTTAAAAAATAAAAAATCGATC-GAGACAACACC
1 TCTTACAGAATCGATCGAAACAACACCGCAAGTCAAAAAATAAAAAATCGATCAGA-ACAACACC
* *
6906016 GCGAATCAAAATTATGCCCGGAGG
65 ACAAATCAAAATTATGCCCGGAGG
* * *
6906040 TCTTACAGAATCGATCGAAATAACACCGCAAGTCAAAAAATAAAAAATCGATCAGAACAATACTA
1 TCTTACAGAATCGATCGAAACAACACCGCAAGTCAAAAAATAAAAAATCGATCAGAACAACACCA
6906105 CAAATCAAAATTATGC
66 CAAATCAAAATTATGC
6906121 ACGATGGTCT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 70 0.97
89 2 0.03
ACGTcount: A:0.46, C:0.21, G:0.15, T:0.18
Consensus pattern (88 bp):
TCTTACAGAATCGATCGAAACAACACCGCAAGTCAAAAAATAAAAAATCGATCAGAACAACACCA
CAAATCAAAATTATGCCCGGAGG
Found at i:6906262 original size:109 final size:109
Alignment explanation
Indices: 6906026--6906263 Score: 272
Period size: 109 Copynumber: 2.2 Consensus size: 109
6906016 GCGAATCAAA
* *
6906026 ATTATGCCCGGAGGTCTTACAGAATCGATCGAAATAACACCGCAAGTCAAAAAATAAAAAATCGA
1 ATTATGCCCGGAGGTCTTACAAAATCGAACGAAATAACACCGCAAGTCAAAAAATAAAAAATCGA
* *
6906091 TCAGAACAATACTACAAATCAAAATTATGCACGATGGTCTTAAAG
66 TAAGAACAACACTA-AAATCAAAATTATGCACGATGGTCTTAAAG
* * * * * *
6906136 ATTATACCCGAAAGTCTTACAAAATC-AAC-AGGATAACATCGCGAGTCAAAAAATAAAAAATCG
1 ATTATGCCCGGAGGTCTTACAAAATCGAACGA-AATAACACCGCAAGTCAAAAAATAAAAAATCG
6906199 ATTAAG-ACAACATCGT-AAATCAAAATTATGC-CTGGA-GGTCTTAAAG
65 A-TAAGAACAACA-C-TAAAATCAAAATTATGCAC--GATGGTCTTAAAG
*
6906245 ATTATGCCTGGAGGTCTTA
1 ATTATGCCCGGAGGTCTTA
6906264 GAAATCATGC
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
108 2 0.02
109 77 0.71
110 28 0.26
111 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.23
Consensus pattern (109 bp):
ATTATGCCCGGAGGTCTTACAAAATCGAACGAAATAACACCGCAAGTCAAAAAATAAAAAATCGA
TAAGAACAACACTAAAATCAAAATTATGCACGATGGTCTTAAAG
Found at i:6906273 original size:22 final size:21
Alignment explanation
Indices: 6906220--6906273 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 21
6906210 ATCGTAAATC
6906220 AAAATTATGCCTGGAGGTCTT
1 AAAATTATGCCTGGAGGTCTT
6906241 AAAGATTATGCCTGGAGGTCTT
1 AAA-ATTATGCCTGGAGGTCTT
*
6906263 AGAAATCATGC
1 A-AAATTATGC
6906274 TCGAAGGTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 3 0.10
22 25 0.83
23 2 0.07
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (21 bp):
AAAATTATGCCTGGAGGTCTT
Found at i:6906454 original size:132 final size:132
Alignment explanation
Indices: 6906126--6906488 Score: 365
Period size: 132 Copynumber: 2.8 Consensus size: 132
6906116 TATGCACGAT
* * * * * *
6906126 GGTCTTA-AAGATTATACCCGAA-AGTCTTACAAAATCAACAG-GATAACATCGCGAGTCAAAAA
1 GGTCTTAGAA-ATCATACCCGAAGA-TCTTACAAAATCGACTGAGACAACACCGCAAGTCAAAAA
*** * * ** *
6906188 ATAAAAAATCGATTAAGACAACATCGTAAATCAAAATTATGCCTGGAGGTCTTAAAGATTATGCC
64 ATAAAAAATCGATCGGGATAACACCGCGAATCAAAATAATGCCTGGAGGTCTTAAAGATTATGCC
6906253 TGGA
129 TGGA
* * * * * * * *
6906257 GGTCTTAGAAATCATGCTCGAAGGTCTTACAGAATCGACTGGGACAACACCGCATGTCGAGAAAT
1 GGTCTTAGAAATCATACCCGAAGATCTTACAAAATCGACTGAGACAACACCGCAAGTCAAAAAAT
* *
6906322 AAAGAATCGATCGGGATAACACCGCGAATCAAAATAATGCTTGGAGGTCTTAAAGATTATGCCTG
66 AAAAAATCGATCGGGATAACACCGCGAATCAAAATAATGCCTGGAGGTCTTAAAGATTATGCCTG
6906387 GA
131 GA
* * ** * *
6906389 GGTCTTAGAAATCATACCCGAAGATCTTTCAAAATCGA-TCGAGATAACATTGTAAGTTAAAAAA
1 GGTCTTAGAAATCATACCCGAAGATCTTACAAAATCGACT-GAGACAACACCGCAAGTCAAAAAA
* * * *
6906453 TAAAAAATTGATTGGTATAACACCGCGAATTAAAAT
65 TAAAAAATCGATCGGGATAACACCGCGAATCAAAAT
6906489 TATACTCGAA
Statistics
Matches: 186, Mismatches: 42, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
131 31 0.17
132 155 0.83
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (132 bp):
GGTCTTAGAAATCATACCCGAAGATCTTACAAAATCGACTGAGACAACACCGCAAGTCAAAAAAT
AAAAAATCGATCGGGATAACACCGCGAATCAAAATAATGCCTGGAGGTCTTAAAGATTATGCCTG
GA
Found at i:6906571 original size:88 final size:87
Alignment explanation
Indices: 6906397--6906666 Score: 292
Period size: 88 Copynumber: 3.1 Consensus size: 87
6906387 GAGGTCTTAG
* * * * * *
6906397 AAATCATACCCGAAGATCTTTCAAAATCGATCGAGATAACATTGTAAGTTAAAAAATAAAAAATT
1 AAATTATA-CCGAAGATCTTACAGAATCGATCGGGATAACATCGTAAGTTAAAAAATAAAAAATC
* *
6906462 GATTG-GTATAACACCGCGAATTA
65 GATTGAG-ATAACATCGTGAATTA
* *
6906485 AAATTATACTCGAAAATCTTACAGAATCGATCGGGATAACATCGTAAGTAAAAAAATAAAAAATC
1 AAATTATAC-CGAAGATCTTACAGAATCGATCGGGATAACATCGTAAGTTAAAAAATAAAAAATC
*
6906550 GATTGAGATAATATCGTGAATTA
65 GATTGAGATAACATCGTGAATTA
* * * * * * **
6906573 AAATTATGCCTGGAGATCTTACAGAATC-AACTGGACAACACCACAAGTTAAAAAATAAAAAATC
1 AAATTATACC-GAAGATCTTACAGAATCGATCGGGATAACATCGTAAGTTAAAAAATAAAAAATC
* * *
6906637 GATCGAGATAACATCGTGTATCA
65 GATTGAGATAACATCGTGAATTA
6906660 AAATTAT
1 AAATTAT
6906667 GCCTGGAGGT
Statistics
Matches: 154, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
87 57 0.37
88 96 0.62
89 1 0.01
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.25
Consensus pattern (87 bp):
AAATTATACCGAAGATCTTACAGAATCGATCGGGATAACATCGTAAGTTAAAAAATAAAAAATCG
ATTGAGATAACATCGTGAATTA
Found at i:6906665 original size:87 final size:88
Alignment explanation
Indices: 6906442--6906680 Score: 277
Period size: 87 Copynumber: 2.7 Consensus size: 88
6906432 ATAACATTGT
* * * * * *
6906442 AAGTTAAAAAATAAAAAATTGATTG-GTATAACACCGCGAATTAAAATTAT-ACTCGAAAATCTT
1 AAGTTAAAAAATAAAAAATCGATTGAG-ATAACATCGTGAATTAAAATTATGCCT-GGAGATCTT
* * * **
6906505 ACAGAATCGATCGGGATAACATCGT
64 ACAGAATCGAACGGGACAACACCAC
* *
6906530 AAGTAAAAAAATAAAAAATCGATTGAGATAATATCGTGAATTAAAATTATGCCTGGAGATCTTAC
1 AAGTTAAAAAATAAAAAATCGATTGAGATAACATCGTGAATTAAAATTATGCCTGGAGATCTTAC
*
6906595 AGAATC-AACTGGACAACACCAC
66 AGAATCGAACGGGACAACACCAC
* * * *
6906617 AAGTTAAAAAATAAAAAATCGATCGAGATAACATCGTGTATCAAAATTATGCCTGGAGGTCTTA
1 AAGTTAAAAAATAAAAAATCGATTGAGATAACATCGTGAATTAAAATTATGCCTGGAGATCTTA
6906681 AAAATTTACT
Statistics
Matches: 129, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
87 68 0.53
88 58 0.45
89 3 0.02
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.25
Consensus pattern (88 bp):
AAGTTAAAAAATAAAAAATCGATTGAGATAACATCGTGAATTAAAATTATGCCTGGAGATCTTAC
AGAATCGAACGGGACAACACCAC
Found at i:6906686 original size:22 final size:22
Alignment explanation
Indices: 6906659--6906729 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 22
6906649 ATCGTGTATC
6906659 AAAATTATGCCTGGAGGTCTTA
1 AAAATTATGCCTGGAGGTCTTA
* *
6906681 AAAATT-TACTTGGAGGTCTTA
1 AAAATTATGCCTGGAGGTCTTA
* * **
6906702 GAAATCATGCCCAGAGGTCTTA
1 AAAATTATGCCTGGAGGTCTTA
6906724 CAAAAT
1 -AAAAT
6906730 CGATCGAGAC
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
21 17 0.45
22 17 0.45
23 4 0.11
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (22 bp):
AAAATTATGCCTGGAGGTCTTA
Found at i:6906768 original size:131 final size:130
Alignment explanation
Indices: 6906605--6906942 Score: 387
Period size: 131 Copynumber: 2.6 Consensus size: 130
6906595 AGAATCAACT
* *
6906605 GGACAACACCACAAGTTAAAAAATAAAAAATCGATCGAGATAACATCGTGTATCAAAATTATGCC
1 GGACAACA-CACAAGTTAAAAAATAAAGAATCGATCGAGATAACATCGTGAATCAAAATTATGCC
* *
6906670 TGGAGGTCTTAAAAATT-TACTTGGAGGTCTTAGAAATCATGC-CCAGAGGTCTTACAAAATCGA
65 TGGAGGTCTTAAAAATTATACTCGGAGATCTTAGAAATCAT-CTCCAGAGGTCTTACAAAATCGA
6906733 TC
129 TC
* * *
6906735 GAGACAACATCACAAGTTGAAAAATAAAGAATCGATC-AGGATAACATCGTAAATCAAAAATATG
1 G-GACAACA-CACAAGTTAAAAAATAAAGAATCGATCGA-GATAACATCGTGAATCAAAATTATG
* * * * * * *
6906799 TCTGGAGGTCTTAGAGATTATGCTCGGAGATCTTAGAGATCATCTCCGGAGGTCTTACAAAATTG
63 CCTGGAGGTCTTAAAAATTATACTCGGAGATCTTAGAAATCATCTCCAGAGGTCTTACAAAATCG
*
6906864 ATT
128 ATC
* * * * * *
6906867 GGAATAACACTGCAAGTCAAAAAATAAAGAATCGATTGGGATAA-ATTGTGAATCAAAATTATGC
1 GG-ACAACAC-ACAAGTTAAAAAATAAAGAATCGATCGAGATAACATCGTGAATCAAAATTATGC
*
6906931 CCGGAGGTCTTA
64 CTGGAGGTCTTA
6906943 CAGAATCGAC
Statistics
Matches: 174, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
130 2 0.01
131 100 0.57
132 72 0.41
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.25
Consensus pattern (130 bp):
GGACAACACACAAGTTAAAAAATAAAGAATCGATCGAGATAACATCGTGAATCAAAATTATGCCT
GGAGGTCTTAAAAATTATACTCGGAGATCTTAGAAATCATCTCCAGAGGTCTTACAAAATCGATC
Found at i:6906807 original size:438 final size:438
Alignment explanation
Indices: 6906150--6907016 Score: 1041
Period size: 438 Copynumber: 2.0 Consensus size: 438
6906140 TACCCGAAAG
* * * * *
6906150 TCTTACAAAATCAACAGGATAACATCGCGAGTCAAAAAATAAAAAATCGATTAAGACAACATCGT
1 TCTTACAAAATCAACAGGACAACACCACAAGTCAAAAAATAAAAAATCGATCAAGACAACATCGT
* * *
6906215 AAATCAAAATTATGCCTGGAGGTCTTAAAGATTATGCCTGGAGGTCTTAGAAATCATGCTCGAAG
66 AAATCAAAATTATGCCTGGAGGTCTTAAAAATTATACCTGGAGGTCTTAGAAATCATGCCCGAAG
* * * * * *
6906280 GTCTTACAGAATCGACTGGGACAACACCGCATGTCGAGAAATAAAGAATCGATCGGGATAACACC
131 GTCTTACAAAATCGACTGAGACAACACCACAAGTCGAAAAATAAAGAATCGATCAGGATAACACC
* *
6906345 GCGAATCAAAATAATGCTTGGAGGTCTTAAAGATTATGC-CTGGAGGTCTTAGAAATCATAC-CC
196 GCAAATCAAAATAATGCTTGGAGGTCTTAAAGATTATGCTC-GGAGATCTTAGAAATCAT-CTCC
* * * * * *
6906408 GAAGATCTTTCAAAATCGATC-GAGATAACATTGTAAGTTAAAAAATAAAAAATTGATTGGTATA
259 GAAGATCTTACAAAATCGATCGGA-ATAACACTGCAAGTCAAAAAATAAAAAATCGATTGGGATA
* * * * * *
6906472 ACACCGCGAATTAAAATTATACTCGAAAATCTTACAGAATCGA-TCGGGATAACATCGTAAGTAA
323 A-ACCGCGAATCAAAATTATACCCGAAAATCTTACAGAATCGACT-AGGACAACACCGCAAGTAA
* * * *
6906536 AAAAATAAAAAATCGATTGAGATAATATCGTGAATTAAAATTATGCCTGGAGA
386 AAAAATAAAAAATCGATCGAGATAACATCGCGAATCAAAATTATGCCTGGAGA
* * * * *
6906589 TCTTACAGAATCAACTGGACAACACCACAAGTTAAAAAATAAAAAATCGATCGAGATAACATCGT
1 TCTTACAAAATCAACAGGACAACACCACAAGTCAAAAAATAAAAAATCGATCAAGACAACATCGT
** *
6906654 GTATCAAAATTATGCCTGGAGGTCTTAAAAATT-TACTTGGAGGTCTTAGAAATCATGCCC-AGA
66 AAATCAAAATTATGCCTGGAGGTCTTAAAAATTATACCTGGAGGTCTTAGAAATCATGCCCGA-A
* *
6906717 GGTCTTACAAAATCGA-TCGAGACAACATCACAAGTTGAAAAATAAAGAATCGATCAGGATAACA
130 GGTCTTACAAAATCGACT-GAGACAACACCACAAGTCGAAAAATAAAGAATCGATCAGGATAACA
* * * *
6906781 TCGTAAATCAAAA-ATATG-TCTGGAGGTCTTAGAGATTATGCTCGGAGATCTTAGAGATCATCT
194 CCGCAAATCAAAATA-ATGCT-TGGAGGTCTTAAAGATTATGCTCGGAGATCTTAGAAATCATCT
* * * * *
6906844 CCGGAGGTCTTACAAAATTGATTGGAATAACACTGCAAGTCAAAAAATAAAGAATCGATTGGGAT
257 CCGAAGATCTTACAAAATCGATCGGAATAACACTGCAAGTCAAAAAATAAAAAATCGATTGGGAT
** * * * ** *
6906909 AAATTGTGAATCAAAATTATGCCCGGAGGTCTTACAGAATCGACTAGGACAACACCGCAAGTCAA
322 AAACCGCGAATCAAAATTATACCCGAAAATCTTACAGAATCGACTAGGACAACACCGCAAGTAAA
* *
6906974 AAAATAAAGAATCGATCGGGATAACATCGCGAATCAAAATTAT
387 AAAATAAAAAATCGATCGAGATAACATCGCGAATCAAAATTAT
6907017 TCTCGGAGGT
Statistics
Matches: 359, Mismatches: 61, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
437 89 0.25
438 182 0.51
439 88 0.25
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (438 bp):
TCTTACAAAATCAACAGGACAACACCACAAGTCAAAAAATAAAAAATCGATCAAGACAACATCGT
AAATCAAAATTATGCCTGGAGGTCTTAAAAATTATACCTGGAGGTCTTAGAAATCATGCCCGAAG
GTCTTACAAAATCGACTGAGACAACACCACAAGTCGAAAAATAAAGAATCGATCAGGATAACACC
GCAAATCAAAATAATGCTTGGAGGTCTTAAAGATTATGCTCGGAGATCTTAGAAATCATCTCCGA
AGATCTTACAAAATCGATCGGAATAACACTGCAAGTCAAAAAATAAAAAATCGATTGGGATAAAC
CGCGAATCAAAATTATACCCGAAAATCTTACAGAATCGACTAGGACAACACCGCAAGTAAAAAAA
TAAAAAATCGATCGAGATAACATCGCGAATCAAAATTATGCCTGGAGA
Found at i:6906827 original size:22 final size:22
Alignment explanation
Indices: 6906802--6906855 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
6906792 AAATATGTCT
*
6906802 GGAGGTCTTAGAGATTATGCT-C
1 GGAGGTCTTAGAGATCAT-CTCC
*
6906824 GGAGATCTTAGAGATCATCTCC
1 GGAGGTCTTAGAGATCATCTCC
6906846 GGAGGTCTTA
1 GGAGGTCTTA
6906856 CAAAATTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (22 bp):
GGAGGTCTTAGAGATCATCTCC
Found at i:6906995 original size:87 final size:88
Alignment explanation
Indices: 6906844--6907035 Score: 255
Period size: 87 Copynumber: 2.2 Consensus size: 88
6906834 GAGATCATCT
* * * * *
6906844 CCGGAGGTCTTACAAAATTGATTGGAATAACACTGCAAGTCAAAAAATAAAGAATCGATTGGGAT
1 CCGGAGGTCTTACAAAATCGATAGGAACAACACCGCAAGTCAAAAAATAAAGAATCGATCGGGAT
* *
6906909 AA-ATTGTGAATCAAAATTATGC
66 AACATCGCGAATCAAAATTATGC
*
6906931 CCGGAGGTCTTACAGAATCGACTAGG-ACAACACCGCAAGTCAAAAAATAAAGAATCGATCGGGA
1 CCGGAGGTCTTACAAAATCGA-TAGGAACAACACCGCAAGTCAAAAAATAAAGAATCGATCGGGA
*
6906995 TAACATCGCGAATCAAAATTATTC
65 TAACATCGCGAATCAAAATTATGC
* *
6907019 TCGGAGGTTTTA-AAAAT
1 CCGGAGGTCTTACAAAAT
6907036 TATGCTCAGA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
87 61 0.67
88 30 0.33
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (88 bp):
CCGGAGGTCTTACAAAATCGATAGGAACAACACCGCAAGTCAAAAAATAAAGAATCGATCGGGAT
AACATCGCGAATCAAAATTATGC
Found at i:6907036 original size:22 final size:23
Alignment explanation
Indices: 6907008--6907058 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
6906998 CATCGCGAAT
* * *
6907008 CAAAATTATTCTCGGAGGTTTTA
1 CAAAATTATGCTCAGAGGTCTTA
6907031 -AAAATTATGCTCAGAGGTCTTA
1 CAAAATTATGCTCAGAGGTCTTA
6907053 CAAAAT
1 CAAAAT
6907059 CGATCGAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (23 bp):
CAAAATTATGCTCAGAGGTCTTA
Found at i:6907412 original size:128 final size:128
Alignment explanation
Indices: 6907239--6907672 Score: 527
Period size: 128 Copynumber: 3.4 Consensus size: 128
6907229 AGAAAGTAAC
* ** * * *
6907239 ATCTTTGAATGCTCCT-TTAATCAGAGGTCTGTG-ATCTTTGAAATTTTAAAAATATTTTATCTG
1 ATCTTTGAATGCTCCTCCTAATCAGAGG-CAATGAAACTTTAAAATTTTAAAAATATTTTATCCG
* * * *
6907302 AAACTGTTAAAAGTTGTGCCCAGAGGCTTTAGAGATTACGCCCGGAGGTCTTACAAATCTCAAA
65 AAAATCTTGAAAGTTGTGCCCAAAGGCTTTAGAGATTACGCCCGGAGGTCTTACAAATCTCAAA
* *
6907366 ATCTTTGAATGCTCCTCCTAATCAGAGGCAATGAAACTTTAAAATTTTGAAAATATTTTGTCCGA
1 ATCTTTGAATGCTCCTCCTAATCAGAGGCAATGAAACTTTAAAATTTTAAAAATATTTTATCCGA
** * * * * *
6907431 AGGTCTTGAAAGTTATGCCCAAAAG-TATTAGAGATTATGCCTGGAAGTCTTACAAATCTCAAA
66 AAATCTTGAAAGTTGTGCCCAAAGGCT-TTAGAGATTACGCCCGGAGGTCTTACAAATCTCAAA
* * * * *
6907494 ATCTTTGAATGCTCTTCCTAATCAGAGGCAATGAAACTTTAAAAATTT-AAAATCTTTTACCCAA
1 ATCTTTGAATGCTCCTCCTAATCAGAGGCAATGAAACTTTAAAATTTTAAAAATATTTTATCCGA
* * *
6907558 AAATCTTGAAAGTTGTGCCCAAAGGCTTTAGAGATTACGTCCAGAGGTCTTACAAATCTTAAA
66 AAATCTTGAAAGTTGTGCCCAAAGGCTTTAGAGATTACGCCCGGAGGTCTTACAAATCTCAAA
* * * *
6907621 ATCTTTAAATGTTCCTCCCAATTAGAGGCAATGAAACTTTGAAAA-TTTAAAA
1 ATCTTTGAATGCTCCTCCTAATCAGAGGCAATGAAACTTT-AAAATTTTAAAA
6907673 TTGAAATCTC
Statistics
Matches: 262, Mismatches: 39, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
127 121 0.46
128 141 0.54
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33
Consensus pattern (128 bp):
ATCTTTGAATGCTCCTCCTAATCAGAGGCAATGAAACTTTAAAATTTTAAAAATATTTTATCCGA
AAATCTTGAAAGTTGTGCCCAAAGGCTTTAGAGATTACGCCCGGAGGTCTTACAAATCTCAAA
Found at i:6908013 original size:26 final size:26
Alignment explanation
Indices: 6907956--6908016 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
6907946 TGCAAATGTA
*
6907956 AATGATGCAAATGCAAATGTCTTTCT
1 AATGATGCAAATGCAAATGTCCTTCT
**
6907982 TGTGATGCAAATGCAAATGTCCCTT-T
1 AATGATGCAAATGCAAATGT-CCTTCT
6908008 AATGATGCA
1 AATGATGCA
6908017 CGAGCAAGTC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (26 bp):
AATGATGCAAATGCAAATGTCCTTCT
Found at i:6909066 original size:13 final size:13
Alignment explanation
Indices: 6909048--6909072 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6909038 GGTACATATT
6909048 TTCTCTATTTTTC
1 TTCTCTATTTTTC
6909061 TTCTCTATTTTT
1 TTCTCTATTTTT
6909073 TTAGATTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (13 bp):
TTCTCTATTTTTC
Found at i:6910150 original size:13 final size:14
Alignment explanation
Indices: 6910132--6910161 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
6910122 TTTTATTTTG
6910132 TTTTG-TTTTGTTT
1 TTTTGTTTTTGTTT
6910145 TTTTGTTTTTGTTT
1 TTTTGTTTTTGTTT
6910159 TTT
1 TTT
6910162 GAAATCTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (14 bp):
TTTTGTTTTTGTTT
Found at i:6914405 original size:18 final size:19
Alignment explanation
Indices: 6914377--6914413 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
6914367 GAATTTGAGA
6914377 AAAATCTTTTTTTTTTTTG
1 AAAATCTTTTTTTTTTTTG
6914396 AAAA-CTTTTTTTTTTTTG
1 AAAATCTTTTTTTTTTTTG
6914414 CTTGTTGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (19 bp):
AAAATCTTTTTTTTTTTTG
Found at i:6916232 original size:30 final size:29
Alignment explanation
Indices: 6916198--6916312 Score: 126
Period size: 30 Copynumber: 3.9 Consensus size: 29
6916188 TAGGGCTTGA
*
6916198 ATTTTAGGGTATCGAAAGTTTAGGGTTTTG
1 ATTTTAGGGT-TTGAAAGTTTAGGGTTTTG
*
6916228 ATTTTAGGGTTTGAAGATTTTAGGGTTTTG
1 ATTTTAGGGTTTGAA-AGTTTAGGGTTTTG
* ** *
6916258 GTTTTAAAGTTTG-ATGTTTAGGGTTTTG
1 ATTTTAGGGTTTGAAAGTTTAGGGTTTTG
*
6916286 ATTTTAGGGTTTAGAAA-TTTTGGGTTT
1 ATTTTAGGGTTT-GAAAGTTTAGGGTTT
6916313 AGGTTTCGAA
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
28 21 0.30
29 15 0.21
30 34 0.49
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.50
Consensus pattern (29 bp):
ATTTTAGGGTTTGAAAGTTTAGGGTTTTG
Done.