Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 30 of 130
Found at i:7641353 original size:21 final size:22
Alignment explanation
Indices: 7641309--7641355 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
7641299 TCTTTTTTTA
*
7641309 TTTTATTTTTATTTTCTAATTT
1 TTTTATTTTTATTTTCTAACTT
7641331 TTTTA-TTTTATTTT-TAACCTT
1 TTTTATTTTTATTTTCTAA-CTT
7641352 TTTT
1 TTTT
7641356 GTTATTTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 3 0.13
21 15 0.65
22 5 0.22
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTATTTTTATTTTCTAACTT
Found at i:7647433 original size:1 final size:1
Alignment explanation
Indices: 7647427--7647452 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
7647417 AACTAAACTG
7647427 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
7647453 GCACAAGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7654798 original size:18 final size:18
Alignment explanation
Indices: 7654752--7654799 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
7654742 AAACCGGAGA
*
7654752 AAATATCTC-TTTATAGT
1 AAATATCTCTTTTAAAGT
* *
7654769 CAATACCATCTTTTAAAGT
1 AAATATC-TCTTTTAAAGT
7654788 AAATATCTCTTT
1 AAATATCTCTTT
7654800 ATAGTCAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 5 0.21
18 7 0.29
19 12 0.50
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.44
Consensus pattern (18 bp):
AAATATCTCTTTTAAAGT
Found at i:7654799 original size:36 final size:37
Alignment explanation
Indices: 7654752--7654829 Score: 122
Period size: 39 Copynumber: 2.1 Consensus size: 37
7654742 AAACCGGAGA
7654752 AAATATCTCTTTATAGTC-AATACCATCTTTTAAAGT
1 AAATATCTCTTTATAGTCAAATACCATCTTTTAAAGT
*
7654788 AAATATCTCTTTATAGTCAATAATACCATCTTTTTAAGT
1 AAATATCTCTTTATAGTC-A-AATACCATCTTTTAAAGT
7654827 AAA
1 AAA
7654830 GCCTTTGACA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
36 18 0.47
39 20 0.53
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.41
Consensus pattern (37 bp):
AAATATCTCTTTATAGTCAAATACCATCTTTTAAAGT
Found at i:7654809 original size:17 final size:17
Alignment explanation
Indices: 7654753--7654809 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 17
7654743 AACCGGAGAA
7654753 AATATCTCTTTATAGTC
1 AATATCTCTTTATAGTC
* * *
7654770 AATACCATCTTTTAAAGTA
1 AATATC-TC-TTTATAGTC
7654789 AATATCTCTTTATAGTC
1 AATATCTCTTTATAGTC
7654806 AATA
1 AATA
7654810 ATACCATCTT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
17 16 0.50
18 4 0.12
19 12 0.38
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (17 bp):
AATATCTCTTTATAGTC
Found at i:7658384 original size:30 final size:31
Alignment explanation
Indices: 7658324--7658387 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 31
7658314 TAAGTTTAAT
*
7658324 TTATTTTGTCTTTCATTTTTTATGCAATCTTTA
1 TTATTTTGTCTTTAATTTTTTAT--AATCTTTA
7658357 TTATTTT-TCTTTAA-TTTTTATATATCTTTA
1 TTATTTTGTCTTTAATTTTTTATA-ATCTTTA
7658387 T
1 T
7658388 ATATATTCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 1 0.03
30 8 0.28
31 7 0.24
32 6 0.21
33 7 0.24
ACGTcount: A:0.20, C:0.09, G:0.03, T:0.67
Consensus pattern (31 bp):
TTATTTTGTCTTTAATTTTTTATAATCTTTA
Found at i:7659357 original size:17 final size:17
Alignment explanation
Indices: 7659335--7659369 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7659325 AAAAATTATT
7659335 AAATTAAAATAATATAA
1 AAATTAAAATAATATAA
* *
7659352 AAATTAAATTTATATAA
1 AAATTAAAATAATATAA
7659369 A
1 A
7659370 GCATAATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATTAAAATAATATAA
Found at i:7667038 original size:53 final size:53
Alignment explanation
Indices: 7666976--7667084 Score: 164
Period size: 53 Copynumber: 2.1 Consensus size: 53
7666966 GGTAAGACTC
* * ** *
7666976 TTTATTTCATAGTTCTGTTTGGGGGACAATATGGTTTATGCACAGTACATTCT
1 TTTATTTCATAGTTCTGTATGGGGGACAATATAGTTTACACAAAGTACATTCT
*
7667029 TTTATTTCATTGTTCTGTATGGGGGACAATATAGTTTACACAAAGTACATTCT
1 TTTATTTCATAGTTCTGTATGGGGGACAATATAGTTTACACAAAGTACATTCT
7667082 TTT
1 TTT
7667085 TTGTAGTCCA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (53 bp):
TTTATTTCATAGTTCTGTATGGGGGACAATATAGTTTACACAAAGTACATTCT
Found at i:7667329 original size:2 final size:2
Alignment explanation
Indices: 7667322--7667355 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7667312 TTGTAGTTAT
7667322 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7667356 CTCCCTGCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7672078 original size:18 final size:18
Alignment explanation
Indices: 7672045--7672079 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7672035 ACCATGGGCC
*
7672045 TCCTCTACCACTTCCACG
1 TCCTCTACCACGTCCACG
*
7672063 TCCTCTACCTCGTCCAC
1 TCCTCTACCACGTCCAC
7672080 CACGTCCTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.51, G:0.06, T:0.29
Consensus pattern (18 bp):
TCCTCTACCACGTCCACG
Found at i:7680940 original size:2 final size:2
Alignment explanation
Indices: 7680933--7680961 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7680923 TAATCAAAGG
7680933 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
7680962 TTACGAGAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7681742 original size:21 final size:22
Alignment explanation
Indices: 7681718--7681764 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 22
7681708 TATATATACA
**
7681718 TATAAATTAGTTTTTTAAAA-T
1 TATAAATTAAATTTTTAAAATT
*
7681739 TAT-ATTTAAATTTTTAAAATT
1 TATAAATTAAATTTTTAAAATT
7681760 TATAA
1 TATAA
7681765 CATATAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 13 0.62
21 7 0.33
22 1 0.05
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TATAAATTAAATTTTTAAAATT
Found at i:7683238 original size:21 final size:21
Alignment explanation
Indices: 7683214--7683264 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
7683204 ATTATTAATT
* *
7683214 TTAATTTTATTGTTATAATAA
1 TTAATTTTATTATTATAACAA
*
7683235 TTAATTTTATTATTATTACAA
1 TTAATTTTATTATTATAACAA
7683256 TTAATTTTA
1 TTAATTTTA
7683265 ATATCACTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TTAATTTTATTATTATAACAA
Found at i:7683265 original size:27 final size:24
Alignment explanation
Indices: 7683168--7683266 Score: 64
Period size: 24 Copynumber: 4.1 Consensus size: 24
7683158 TATCCAATTC
* *
7683168 AATTATTATTATTGTATTTAA-TTT
1 AATT-TTATTATTATAATTAATTTT
* * *
7683192 AAATATA-TATTTATTATTAATTTT
1 AATTTTATTA-TTATAATTAATTTT
*
7683216 AATTTTATTGTTATAA-TAA--TT
1 AATTTTATTATTATAATTAATTTT
7683237 AATTTTATTATTATTACAATTAATTTT
1 AATTTTATTATTA-T--AATTAATTTT
7683264 AAT
1 AAT
7683267 ATCACTACTA
Statistics
Matches: 56, Mismatches: 10, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
21 14 0.25
22 3 0.05
23 12 0.21
24 18 0.32
25 4 0.07
27 5 0.09
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (24 bp):
AATTTTATTATTATAATTAATTTT
Found at i:7688015 original size:13 final size:13
Alignment explanation
Indices: 7687997--7688023 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7687987 TCTTAAACTC
7687997 ATCTCATTACCTA
1 ATCTCATTACCTA
7688010 ATCTCATTACCTA
1 ATCTCATTACCTA
7688023 A
1 A
7688024 AAAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (13 bp):
ATCTCATTACCTA
Found at i:7688845 original size:18 final size:18
Alignment explanation
Indices: 7688810--7688843 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7688800 TATTCTGTAA
*
7688810 TTTTTTCAAAGTCATTTC
1 TTTTTTCAAAGTAATTTC
7688828 TTTTTTC-AAGTAATTT
1 TTTTTTCAAAGTAATTT
7688844 TCACATATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTTTTCAAAGTAATTTC
Found at i:7692161 original size:7 final size:8
Alignment explanation
Indices: 7692145--7692169 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7692135 TAAAATTTTT
7692145 AATTCAAA
1 AATTCAAA
7692153 AATTCAAA
1 AATTCAAA
7692161 AATTCAAA
1 AATTCAAA
7692169 A
1 A
7692170 CATATAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (8 bp):
AATTCAAA
Found at i:7692594 original size:20 final size:21
Alignment explanation
Indices: 7692538--7692609 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
7692528 CAAAATTGTG
* *
7692538 TAAAAGTTTAAATGA-AATATT
1 TAAAATTTTAAATAATAATA-T
**
7692559 TAAAATTTTATGTAATAATAT
1 TAAAATTTTAAATAATAATAT
* *
7692580 T-AAATTTTAAATAATTATTT
1 TAAAATTTTAAATAATAATAT
7692600 TAAAATTTTA
1 TAAAATTTTA
7692610 TTGTAAAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 16 0.39
21 21 0.51
22 4 0.10
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (21 bp):
TAAAATTTTAAATAATAATAT
Found at i:7696550 original size:2 final size:2
Alignment explanation
Indices: 7696543--7696571 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7696533 TGATAAAGTC
7696543 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7696572 GAGAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7698268 original size:17 final size:17
Alignment explanation
Indices: 7698246--7698280 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7698236 CATACTTTTA
*
7698246 TATATTTTTAATACAAT
1 TATATTTCTAATACAAT
*
7698263 TATATTTCTAGTACAAT
1 TATATTTCTAATACAAT
7698280 T
1 T
7698281 GATCATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (17 bp):
TATATTTCTAATACAAT
Found at i:7702298 original size:27 final size:27
Alignment explanation
Indices: 7702268--7702320 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
7702258 AGTTATACTA
* * *
7702268 AAATAGTTATTTGTAATGAATGAACAG
1 AAATAATTATTTATAATGAATAAACAG
*
7702295 AAATAATTGTTTATAATGAATAAACA
1 AAATAATTATTTATAATGAATAAACA
7702321 AACATAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.49, C:0.04, G:0.13, T:0.34
Consensus pattern (27 bp):
AAATAATTATTTATAATGAATAAACAG
Found at i:7702449 original size:20 final size:21
Alignment explanation
Indices: 7702413--7702453 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
7702403 GTTATGACTA
*
7702413 TTTATCATATAATAATTATTT
1 TTTATCAAATAATAATTATTT
7702434 TTTATCAAAT-ATAATTATTT
1 TTTATCAAATAATAATTATTT
7702454 AAAATATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTATCAAATAATAATTATTT
Found at i:7707774 original size:17 final size:17
Alignment explanation
Indices: 7707733--7707774 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
7707723 TATTTTAATT
7707733 TTTTAAATAAATTTTTA
1 TTTTAAATAAATTTTTA
* **
7707750 CTCAAAATAAATTTTTA
1 TTTTAAATAAATTTTTA
7707767 TTTTAAAT
1 TTTTAAAT
7707775 CAAAGATATT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTTAAATAAATTTTTA
Found at i:7707837 original size:32 final size:30
Alignment explanation
Indices: 7707799--7707877 Score: 97
Period size: 32 Copynumber: 2.6 Consensus size: 30
7707789 TTATATTAAG
*
7707799 AATTTATTTAAATATAAATT-AACAGTTTTAA
1 AATTTATTTAAATATAAATTCAA-AG-TTGAA
* *
7707830 AATTTTATTTAAATAAAAATTCAAAGTTGAT
1 AA-TTTATTTAAATATAAATTCAAAGTTGAA
7707861 AATTTATTTAAATATAA
1 AATTTATTTAAATATAA
7707878 TAAAAATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
30 14 0.33
31 7 0.17
32 19 0.45
33 2 0.05
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (30 bp):
AATTTATTTAAATATAAATTCAAAGTTGAA
Found at i:7709955 original size:233 final size:232
Alignment explanation
Indices: 7709547--7710026 Score: 834
Period size: 233 Copynumber: 2.1 Consensus size: 232
7709537 TCTTTATTTC
* *
7709547 TATATTTTAAAAGAAAAACAAGAATACTTTTTGAACCTACTGTTGAGGTGTGAACAGGGAAAAAA
1 TATA-TTTAAAAGAAAAACAAGAATACTTTTTGAACCTACTATTGAGGTGTGAACAGAGAAAAAA
*
7709612 AAAACATGAACATTATTTTAAATACAGCAGCAGCAGGACGTCGGGTGTTTAAGGTGGACACGTCG
65 AAAACATGAACATTATTTTAAATACAGAAGCAGCAGGACGTCGGGTGTTTAAGGTGGACACGTCG
*
7709677 AGACACGGTTTAGAATAAGTAGAAAAAAGTCCTTTGGAACCAAACATTAACGCTAGAAAGAAACT
130 AGACACGGTTTAGAATAAGTAGAAAAAAGTCCTTTGGAACCAAACATCAACGCTAGAAAGAAACT
*
7709742 GCCTGGAACTGCAATTTGAATGATTTAATTATAGCGCA
195 GCCTGGAACTGCAATTTGAATGATTTAATTATAGCACA
*
7709780 TATATTTAAAAGAAAAACGAGAATACTTTTTGAACCTACTATTGAGGTGTGAACAGAGAAAAAAC
1 TATATTTAAAAGAAAAACAAGAATACTTTTTGAACCTACTATTGAGGTGTGAACAGAGAAAAAA-
* *
7709845 AAAACATGAACATTATTTTAAGTGCAGAAGCAGCAGGACGTCGGGTGTTTAAGGTGGACACGTCG
65 AAAACATGAACATTATTTTAAATACAGAAGCAGCAGGACGTCGGGTGTTTAAGGTGGACACGTCG
*
7709910 AGACACGGTTTAGAATAAGTAGAAAAAAGTCCTTTGGAGCCAAACATCAACGCTAGAAAGAAACT
130 AGACACGGTTTAGAATAAGTAGAAAAAAGTCCTTTGGAACCAAACATCAACGCTAGAAAGAAACT
* *
7709975 GCCTGGAACTGTAATTTGAATGATTTAATTATAGCATA
195 GCCTGGAACTGCAATTTGAATGATTTAATTATAGCACA
*
7710013 TATATTTATAAGAA
1 TATATTTAAAAGAA
7710027 GTGAGTAAAA
Statistics
Matches: 234, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
232 57 0.24
233 177 0.76
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (232 bp):
TATATTTAAAAGAAAAACAAGAATACTTTTTGAACCTACTATTGAGGTGTGAACAGAGAAAAAAA
AAACATGAACATTATTTTAAATACAGAAGCAGCAGGACGTCGGGTGTTTAAGGTGGACACGTCGA
GACACGGTTTAGAATAAGTAGAAAAAAGTCCTTTGGAACCAAACATCAACGCTAGAAAGAAACTG
CCTGGAACTGCAATTTGAATGATTTAATTATAGCACA
Found at i:7713973 original size:21 final size:21
Alignment explanation
Indices: 7713944--7713986 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7713934 TCAACCTATA
*
7713944 TCAATTTCAGGACCAATAATC
1 TCAAATTCAGGACCAATAATC
*
7713965 TCAAATTCAGTACCAATAATC
1 TCAAATTCAGGACCAATAATC
7713986 T
1 T
7713987 TTCCTCTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (21 bp):
TCAAATTCAGGACCAATAATC
Found at i:7720286 original size:22 final size:23
Alignment explanation
Indices: 7720243--7720286 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
7720233 TGTTAACAAA
** *
7720243 TATTTTATAAAATATTATAATTC
1 TATTTTATAAAATAAAAAAATTC
7720266 TATTTT-TAAAATAAAAAAATT
1 TATTTTATAAAATAAAAAAATT
7720287 AAAAGTACAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TATTTTATAAAATAAAAAAATTC
Found at i:7720318 original size:30 final size:30
Alignment explanation
Indices: 7720283--7720342 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
7720273 AAAATAAAAA
*
7720283 AATTAAAAGTACATTGATAAAATTT-AATAT
1 AATTAAAAGTACAATGAT-AAATTTCAATAT
*
7720313 AATTAAAAGTATAATGATAAATTTCAATAT
1 AATTAAAAGTACAATGATAAATTTCAATAT
7720343 TAAATCATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (30 bp):
AATTAAAAGTACAATGATAAATTTCAATAT
Found at i:7722573 original size:387 final size:386
Alignment explanation
Indices: 7721010--7724035 Score: 2215
Period size: 387 Copynumber: 7.8 Consensus size: 386
7721000 AATAAAATAG
* * * * * *
7721010 GATGATAATCATCTTATATTATGTTTGATTTGTATATAAAGAGAAGGATAATGATTGTAAGGAAG
1 GATGATAATTATCTTATATTATGTTTGATTTGTATTTAAAGAAAAAGAT-AGGATTATAA-GAAG
* * * * * ** *
7721075 -ATTAAT-ATTCTCTTGGCATAGGATTATTCAATTTTTCTAAAGTGTAGAGAATTATTTTTAATC
64 AATTAATCATCCTCTTGGTATAAGATAATTTAATCCTTCCAAAGTGTAGAGAATTATTTTTAATC
* * *
7721138 TATGAGATTAAACTTACATGTCCAATTATACCTTTAAAAATTATATCAATAATTTAAATTATATA
129 TATGAGATTAAACTTATATGTCCTATTATACCTTTAAAAATTATATCAATAATTTAAATTGTATA
* ** *
7721203 AATTTTTAAAAAGGATAATTTTGAC-AAATAAATAAATCATTTTAT-TCTAATCATTGCATACAT
194 AA-TTTTAAAAAGGATAATTTTGACTAAA-AAATAAATTATCCTATAT-TAATCATTGCACACAT
* * * * * * *
7721266 CAAACACAAAAT-AGAATGTCATTATTTAATTTAATCATATTTATAGTATTATTTTATCCTATTT
256 CAAACATAAAATAAG-ATGACATTATTTAATTTAATCTTA-TTATAATATTATCTTATCTTATCT
* * * * * * * * *
7721330 TATTATAATATTGTGTACCAAACATTATCTTAGATAATGTTTGATGCATAAGATTA-ATGATAGG
319 TATCATAATCTTGTATACCAAACATGACCTTAGGTCATGTTTGATGCATAAGATGATA-GATATG
*
7721394 AAAT
383 ATAT
* * * * * * * * *
7721398 GATGATAATTATCATATATCATGTTTGA-TTATATTTAGAGAGAAGGATAGTGATTGTAAAAAAA
1 GATGATAATTATCTTATATTATGTTTGATTTGTATTTAAAGAAAAAGATAG-GATTATAAGAAGA
* * * * * ** * *
7721462 ATTAAT-ATCCTCTTAGCATAGGATTATTCAATTTTTTCTAAGT-TAAGAGAATTATTTTTAATC
65 ATTAATCATCCTCTTGGTATAAGATAATTTAATCCTTCCAAAGTGT-AGAGAATTATTTTTAATC
* * * *
7721525 CAT-AGTATTAAACTTATATGT-CAATTATACCCTTAAAAATTATATCAATAATTTAAATTATAT
129 TATGAG-ATTAAACTTATATGTCCTATTATACCTTTAAAAATTATATCAATAATTTAAATTGTAT
* * * * ** **
7721588 AAACTTTGAGAAAGGATAATTTTGA-GAAATAAATAAATTATCTTATCCTAATCATTGCATGCAT
193 AAA-TTTTAAAAAGGATAATTTTGACTAAA-AAATAAATTATCCTATATTAATCATTGCACACAT
* * * * * * * * *
7721652 GAAATACAAAATAAAATGATATTATTTAATCTAACCCTATTTATAATATTATCTTATCTTATCAT
256 CAAACATAAAATAAGATGACATTATTTAATTTAATCTTA-TTATAATATTATCTTATCTTATCTT
* ** * * *
7721717 ATC-T--T-GTGTATCACCAAACATGTTCTTAAGTTATGTTT-A-GTCA-ATAGAATGATGGATA
320 ATCATAATCTTGTAT-ACCAAACATGACCTTAGGTCATGTTTGATG-CATA-AG-ATGATAGATA
* *
7721775 GGATAA
381 TGATAT
* * * * * * ** *
7721781 AATGATGATCATCATATATTATGTTTTATTTGTATCTAAAGAAAGGGATAGGATTATAAGAAGGA
1 GATGATAATTATCTTATATTATGTTTGATTTGTATTTAAAGAAAAAGATAGGATTATAAGAAGAA
* * * * * * *
7721846 TT-ATCATCATTTTGCTAT-AGAATAATTCAATCTTTTCAAAGT-TGAGAGGATTATTTTTAATC
66 TTAATCATCCTCTTGGTATAAG-ATAATTTAATCCTTCCAAAGTGT-AGAGAATTATTTTTAATC
* * * * *
7721908 TATGAGATTGAATTTATATGTCAT-TTATACCTTTAAAAATTATATTAATAACTTAAATTGTATA
129 TATGAGATTAAACTTATATGTCCTATTATACCTTTAAAAATTATATCAATAATTTAAATTGTATA
* * * * * *
7721972 AACTTTGAAAAAGGATAATTTTGATTAATAAATAAATTATCGTATCA-TAATCCTTGCACATATC
194 AA-TTTTAAAAAGGATAATTTTGACTAAAAAATAAATTATCCTAT-ATTAATCATTGCACACATC
* * ** * * * * *
7722036 AAACATAAGATAGGATGGTATTATTTAATATAATCATATTCATAATATTATTTTATCCTATCCTA
257 AAACATAAAATAAGATGACATTATTTAATTTAATCTTATT-ATAATATTATCTTATCTTATCTTA
* * * * *
7722101 TCATAATCTTGTGTACCAAATATGACCTTAGGTCATGTTTGGTGTATAAGATGATGGATATGATA
321 TCATAATCTTGTATACCAAACATGACCTTAGGTCATGTTTGATGCATAAGATGATAGATATGATA
7722166 -
386 T
* * * * ** *
7722166 GTACGATAATTATTTTATATTATGTTTGGTTTGTATTTAATTGAAAAAGATAGGATTACGAGGAG
1 G-ATGATAATTATCTTATATTATGTTTGATTTGTATTTAA-AGAAAAAGATAGGATTATAAGAAG
* *
7722231 AATT-GTCATCCTCTTGGTATAAGATAATTTAATCCTTCCAAAATGTAGAGAATTATTTTTAATC
64 AATTAATCATCCTCTTGGTATAAGATAATTTAATCCTTCCAAAGTGTAGAGAATTATTTTTAATC
*
7722295 TATGAGATTAAACTTATATGTCCTATTCTACCTTTAAAAATTATATCAATAATTTAAATTGTATA
129 TATGAGATTAAACTTATATGTCCTATTATACCTTTAAAAATTATATCAATAATTTAAATTGTATA
* * *
7722360 AATTTTAAAGAAGAATAATTTTGACTAAAAAATAAATTATCCAATATTAATTC-TTGCCCACATC
194 AATTTTAAA-AAGGATAATTTTGACTAAAAAATAAATTATCCTATATTAA-TCATTGCACACATC
* * * * * * *
7722424 AAACATAAGATAGGATAAGATTATTTAATCTAATCTTATTCATAATGTTATCTTATCTTATTTTA
257 AAACATAAAATAAGATGACATTATTTAATTTAATCTTATT-ATAATATTATCTTATCTTATCTTA
* * *
7722489 TCA-AATCTTGTTTACCAAACATGACCTTAGGTCATGTTTGATGTATACGATGATAGATATGATA
321 TCATAATCTTGTATACCAAACATGACCTTAGGTCATGTTTGATGCATAAGATGATAGATATGATA
7722553 T
386 T
* * * * *
7722554 GAT-ACTAATTATCTTATATTATATTTGATTTGTATATAAAGAAAGAGATAAGATTGTAAGAATG
1 GATGA-TAATTATCTTATATTATGTTTGATTTGTATTTAAAGAAAAAGATAGGATTATAAGAA-G
* * * * * *
7722618 -ATTAATCATCCTCTTGATATAGGATGATTTAATCATTTCAAAGTAG-AGAGGATTATTTTTAAT
64 AATTAATCATCCTCTTGGTATAAGATAATTTAATCCTTCCAAAGT-GTAGAGAATTATTTTTAAT
* *
7722681 CTATGAGATTGAACTTATATGTCCTATTATACTTTTAAAAATTATATCAATAATTTAAATTGTAT
128 CTATGAGATTAAACTTATATGTCCTATTATACCTTTAAAAATTATATCAATAATTTAAATTGTAT
* * * * * * * * * * *
7722746 AAATGTGAAAAATGATAATTTTAACCAATAAATAAATTATTCTATCA-TAATCCTTACATATATC
193 AAATTTTAAAAAGGATAATTTTGACTAAAAAATAAATTATCCTAT-ATTAATCATTGCACACATC
* * * * * *
7722810 AAACATAAAATAAGATGACATTATTCAATTTAATTCTAAGTATAATATCATCATATTTTAT-TGT
257 AAACATAAAATAAGATGACATTATTTAATTTAA-TCTTATTATAATATTATCTTATCTTATCT-T
* * * * ** * * *
7722874 ATCATAATCTTATATATCAAACA-CATCCTT-GGATCATATACGATGCATAGGATGATGGATAAG
320 ATCATAATCTTGTATACCAAACATGA-CCTTAGG-TCATGTTTGATGCATAAGATGATAGATATG
7722937 ATAT
383 ATAT
* * * * *
7722941 GATGATAATTAT-TCTACATTATGTTTGATTTGTATTTAAAGAAAATGATAGGATTACAAGGAGG
1 GATGATAATTATCT-TATATTATGTTTGATTTGTATTTAAAGAAAAAGATAGGATTATAAGAAGA
* * * * *
7723005 ATTAATCATCATCTTGGTATAGGATAATTTAATTCTCCCAAAGTGGAGATG-ATTATTTTTAATC
65 ATTAATCATCCTCTTGGTATAAGATAATTTAATCCTTCCAAAGTGTAGA-GAATTATTTTTAATC
* * * ** * * * * *
7723069 CATAAGATTGAACTTACGTGTCATATTCTA-CTATTAAAAACTACATTAATAA-TTAAATTGTAT
129 TATGAGATTAAACTTATATGTCCTATTATACCT-TTAAAAATTATATCAATAATTTAAATTGTAT
* * * * * * * *
7723132 AAACTTTAAAGAATGATAATTTTAATTAATAAATAAATTATCCTATTTTAATCATTACACATATC
193 AAATTTTAAA-AAGGATAATTTTGACTAAAAAATAAATTATCCTATATTAATCATTGCACACATC
* * * *
7723197 AAACATAAGATAAGATGACATTATTTAATTTAATCATAATTATAATATCATCTTATCTTATCCTA
257 AAACATAAAATAAGATGACATTATTTAATTTAATC-TTATTATAATATTATCTTATCTTATCTTA
* * * * * * **
7723262 TTATAATCTTGTATACCAAACAT-ATACTTAGGTCATATTTGGTACATAGGATGATAGATAAAAT
321 TCATAATCTTGTATACCAAACATGA-CCTTAGGTCATGTTTGATGCATAAGATGATAGATATGAT
7723326 A-
385 AT
* * * * * * * *
7723327 GAATGATACTCAT-TATTTATTATGTTTGATTTGCATATAAAGAAAATGATAGAATCATAAGGAA
1 G-ATGATAATTATCT-TATATTATGTTTGATTTGTATTTAAAGAAAAAGATAGGATTATAA-GAA
* ** * * * * *
7723391 G-ATTAATCATCTTCTTAATATAAGATGATTAAATCCTCCCAAAGTGGAAAGAATTATTTTTAAA
63 GAATTAATCATCCTCTTGGTATAAGATAATTTAATCCTTCCAAAGTGTAGAGAATTATTTTT-AA
* * * * * *
7723455 TCCATGAGATTAAACTTACATGTCATATTATATCATTAAAAATTACATCAATAATTTAAATTGTA
127 TCTATGAGATTAAACTTATATGTCCTATTATACCTTTAAAAATTATATCAATAATTTAAATTGTA
* * * * * *
7723520 TAAATTTTGAGGAACGG-TAATCTTGA-TCAATAAATAAATTATCCTATCA-TGATCATTGCATA
192 TAAATTTT-A-AAAAGGATAATTTTGACT-AAAAAATAAATTATCCTAT-ATTAATCATTGCACA
* * * * * *
7723582 TA-CAAACACAAGATATGAT-AGCAATATTTAATTTAATCCTATTTATAATATTA---T-T-TTA
253 CATCAAACATAAAATAAGATGA-CATTATTTAATTTAATCTTA-TTATAATATTATCTTATCTTA
* * * * **
7723640 TCTTATTATAATCTTATGTACCAAATACAT--CCTTAGATTTTGTTTTGATGCA-AATGATGATA
316 TCTTATCATAATCTTGTATACC-AA-ACATGACCTTAGGTCATG-TTTGATGCATAA-GATGATA
* *
7723702 GATAGGATAG
377 GATATGATAT
* * * * * * **
7723712 GATGATAATCATCATATATTATATTTGATTTGTATCTAATG-----GATAAGATTGCAAGGAAG-
1 GATGATAATTATCTTATATTATGTTTGATTTGTATTTAAAGAAAAAGATAGGATTATAA-GAAGA
* * * * * * * * *
7723771 ATTAATCATCTTTTTGATATAGGATGATTCACTTC-TCTCAAAGTAG-AGAGGATTATTTTTAAT
65 ATTAATCATCCTCTTGGTATAAGATAATTTAATCCTTC-CAAAGT-GTAGAGAATTATTTTTAAT
* * * * * ** *
7723834 TTATGAAATTAAATTTACATGTCCTGTTATACCTTTAAAAATTACGTTAATAATTTAAATTGTAT
128 CTATGAGATTAAACTTATATGTCCTATTATACCTTTAAAAATTATATCAATAATTTAAATTGTAT
* * * ** * *
7723899 AAACTTTGAGAAAGGATAATTTTGA-TCAATAAATAAATTATTTTATCTTAATTC-TTGTACACA
193 AAA-TTTTAAAAAGGATAATTTTGACT-AAAAAATAAATTATCCTATATTAA-TCATTGCACACA
* * * * * * * * *
7723962 TTAAACATAAAATAAGAAGATATTATTTATTTTAATCCTATTTATAATATCATGTTATCCTATTT
255 TCAAACATAAAATAAGATGACATTATTTAATTTAATCTTA-TTATAATATTATCTTATCTTATCT
*
7724027 TATTATAAT
319 TATCATAAT
7724036 TTTATATGCC
Statistics
Matches: 2162, Mismatches: 386, Indels: 184
0.79 0.14 0.07
Matches are distributed among these distances:
377 5 0.00
378 98 0.05
379 105 0.05
380 2 0.00
381 2 0.00
382 15 0.01
383 296 0.14
384 91 0.04
385 10 0.00
386 355 0.16
387 854 0.40
388 267 0.12
389 58 0.03
390 3 0.00
391 1 0.00
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (386 bp):
GATGATAATTATCTTATATTATGTTTGATTTGTATTTAAAGAAAAAGATAGGATTATAAGAAGAA
TTAATCATCCTCTTGGTATAAGATAATTTAATCCTTCCAAAGTGTAGAGAATTATTTTTAATCTA
TGAGATTAAACTTATATGTCCTATTATACCTTTAAAAATTATATCAATAATTTAAATTGTATAAA
TTTTAAAAAGGATAATTTTGACTAAAAAATAAATTATCCTATATTAATCATTGCACACATCAAAC
ATAAAATAAGATGACATTATTTAATTTAATCTTATTATAATATTATCTTATCTTATCTTATCATA
ATCTTGTATACCAAACATGACCTTAGGTCATGTTTGATGCATAAGATGATAGATATGATAT
Found at i:7722778 original size:774 final size:767
Alignment explanation
Indices: 7720971--7724009 Score: 2655
Period size: 774 Copynumber: 3.9 Consensus size: 767
7720961 TTTTAGATAT
* * ** *
7720971 TTAGGTCATCTTTGATGTATAGGATTATTA-ATAAAATAGGATGATAATCATCTTATATTATGTT
1 TTAGGTCATGTTTGATGTATAGGATGA-TAGATATGATATGATGATAATCATCTTATATTATGTT
* * **
7721035 TGATTTGTATATAAAGAGAAG-GATAATGATTGTAAGGAAGATTAAT-ATTCTCTTGGCATAGGA
65 TGATTTGTATATAAAGA-AAGAGATAA-GATTATAAGGAAGATTAATCATCCTCTTGATATAGGA
*
7721098 TTATTCAAT-TTTTCTAAAGTGTAGAGAATTATTTTTAATCTATGAGATTAAACTTACATGTCCA
128 TGATTCAATCTTTTC-AAAGTG-AGAGAATTATTTTTAATCTATGAGATTAAACTTACATGT-CA
* *
7721162 -ATTATACCTTTAAAAATTATATCAATAATTTAAATTATATAAATTTTTAAAAAGGATAATTTTG
190 TATTATACCTTTAAAAATTATATCAATAATTTAAATTGTATAAATTTTGAAAAAGGATAATTTTG
* * * * * *
7721226 ACAAATAAATAAATCATTTTATTC-TAATCATTGCATACATCAAACACAAAATAGAATGTCATTA
255 ACCAATAAATAAATTA-TCTA-TCATAATCATTGCATATATCAAACACAAAATAGGATGGCATTA
* * * *
7721290 TTTAATTTAATCATATTTATAGTATTATTTTATCCTATTTTATTATAATATTGTGTACCAAACAT
318 TTTAATTTAATCATATTTATAATATTATTTTATCCTATTCTATCATAATCTTGTGTACCAAACAT
* * * * * * * * *
7721355 TATCTTAGATAATGTTTGATGCATAAGATTAAT-GATAGGAAATGATGATAATTATCATATATCA
383 CACCTTAGGTCATGTTTGATGCATAAGA-TGATGGATAAGATATGATGATAATTATTATATATTA
* * * * ** ** * * *
7721419 TGTTT-GATTATATTTAGAGAGAAGGATAGTGATTGTAAAAAAAATTAAT-ATCCTCTTAGCATA
447 TGTTTGGTTTGTATTTA-AGAAAAAGATAG-GATTACAAGGAGAATTAATCATCCTCTTGGTATA
* * * * *
7721482 GGATTATTCAATTTTTTCTAAGT-TAAGAGAATTATTTTTAATCCATAGTATTAAACTTATATGT
510 GGATAATTTAATTCTTCCAAAGTGT-AGAGAATTATTTTTAATCCATAG-ATTAAACTTATATGT
* * * * *
7721546 -CAATTATACCCTTAAAAATTATATCAATAATTTAAATTATATAAACTTTGAGAA-AGGATAATT
573 CCTATTCTACCTTTAAAAATTATATCAATAATTTAAATTGTATAAACTTT-A-AAGAAGATAATT
* * ** ** * * * * * *
7721609 TTGAGAAATAAATAAATTATCTTATCCTAATCATTGCATGCATGAAATACAAAATAAAATGATAT
636 TTGATAAA-AAATAAATTATCCTATATTAATCATTGCACACATCAAACATAAGATAAGATGACAT
* * *
7721674 TATTTAATCTAACCCTATTTATAA--TA--TTATCTTATCTTATCATATCTTGTGTATCACCAAA
700 TATTTAATCTAATCTTA-TTATAATTTATCTTATCTTATCTTATCAAATCTTGT-T-T-ACCAAA
**
7721735 CATGTTC
761 CATGAAC
* * * * * ** * *
7721742 TTAAGTTATGTTT-A-GTCAATAGAATGATGGATAGGATAAAATGATGATCATCATATATTATGT
1 TTAGGTCATGTTTGATGT--ATAGGATGATAGATATGATATGATGATAATCATCTTATATTATGT
* * * * * * * *
7721805 TTTATTTGTATCTAAAGAAAGGGATAGGATTATAA-GAAGGATT-ATCATCATTTTGCTATAGAA
64 TTGATTTGTATATAAAGAAAGAGATAAGATTATAAGGAA-GATTAATCATCCTCTTGATATAGGA
* * * * *
7721868 TAATTCAATCTTTTCAAAGTTGAGAGGATTATTTTTAATCTATGAGATTGAATTTATATGTCAT-
128 TGATTCAATCTTTTCAAAG-TGAGAGAATTATTTTTAATCTATGAGATTAAACTTACATGTCATA
* * * *
7721932 TTATACCTTTAAAAATTATATTAATAACTTAAATTGTATAAACTTTGAAAAAGGATAATTTTGAT
192 TTATACCTTTAAAAATTATATCAATAATTTAAATTGTATAAATTTTGAAAAAGGATAATTTTGAC
* * * * * *
7721997 TAATAAATAAATTATCGTATCATAATCCTTGCACATATCAAACATAAGATAGGATGGTATTATTT
257 CAATAAATAAATTATC-TATCATAATCATTGCATATATCAAACACAAAATAGGATGGCATTATTT
* * * * *
7722062 AATATAATCATATTCATAATATTATTTTATCCTATCCTATCATAATCTTGTGTACCAAATATGAC
321 AATTTAATCATATTTATAATATTATTTTATCCTATTCTATCATAATCTTGTGTACCAAACATCAC
* * * * *
7722127 CTTAGGTCATGTTTGGTGTATAAGATGATGGATATGATA-GTACGATAATTATTTTATATTATGT
386 CTTAGGTCATGTTTGATGCATAAGATGATGGATAAGATATG-ATGATAATTATTATATATTATGT
* * *
7722191 TTGGTTTGTATTTAATTGAAAAAGATAGGATTACGAGGAGAATT-GTCATCCTCTTGGTATAAGA
450 TTGGTTTGTATTTAA--GAAAAAGATAGGATTACAAGGAGAATTAATCATCCTCTTGGTATAGGA
* * *
7722255 TAATTTAATCCTTCCAAAATGTAGAGAATTATTTTTAATCTATGAGATTAAACTTATATGTCCTA
513 TAATTTAATTCTTCCAAAGTGTAGAGAATTATTTTTAATCCAT-AGATTAAACTTATATGTCCTA
*
7722320 TTCTACCTTTAAAAATTATATCAATAATTTAAATTGTATAAATTTTAAAGAAGAATAATTTTGAC
577 TTCTACCTTTAAAAATTATATCAATAATTTAAATTGTATAAACTTTAAAGAAG-ATAATTTTGA-
* * * * *
7722385 TAAAAAATAAATTATCCAATATTAATTC-TTGCCCACATCAAACATAAGATAGGATAAGATTATT
640 TAAAAAATAAATTATCCTATATTAA-TCATTGCACACATCAAACATAAGATAAGATGACATTATT
* *
7722449 TAATCTAATCTTATTCATAATGTTATCTTATCTTATTTTATCAAATCTTGTTTACCAAACATGAC
704 TAATCTAATCTTATT-ATAAT-TTATCTTATCTTATCTTATCAAATCTTGTTTACCAAACATGAA
7722514 C
767 C
* * *
7722515 TTAGGTCATGTTTGATGTATACGATGATAGATATGATATGAT-ACTAATTATCTTATATTATATT
1 TTAGGTCATGTTTGATGTATAGGATGATAGATATGATATGATGA-TAATCATCTTATATTATGTT
*
7722579 TGATTTGTATATAAAGAAAGAGATAAGATTGTAA-GAATGATTAATCATCCTCTTGATATAGGAT
65 TGATTTGTATATAAAGAAAGAGATAAGATTATAAGGAA-GATTAATCATCCTCTTGATATAGGAT
* * * * * *
7722643 GATTTAATCATTTCAAAGTAGAGAGGATTATTTTTAATCTATGAGATTGAACTTATATGTCCTAT
129 GATTCAATCTTTTCAAAGT-GAGAGAATTATTTTTAATCTATGAGATTAAACTTACATGTCATAT
* * * *
7722708 TATACTTTTAAAAATTATATCAATAATTTAAATTGTATAAA-TGTGAAAAATGATAATTTTAACC
193 TATACCTTTAAAAATTATATCAATAATTTAAATTGTATAAATTTTGAAAAAGGATAATTTTGACC
* * * * * *
7722772 AATAAATAAATTATTCTATCATAATCCTTACATATATCAAACATAAAATAAGATGACATTATTCA
258 AATAAATAAATTA-TCTATCATAATCATTGCATATATCAAACACAAAATAGGATGGCATTATTTA
** * ** ** * * * *
7722837 ATTTAATTC-TAAGTATAATATCATCATATTTTATTGTATCATAATCTTATATATCAAACA-CAT
322 ATTTAA-TCATATTTATAATATTATTTTATCCTATTCTATCATAATCTTGTGTACCAAACATCA-
* ** * * *
7722900 CCTT-GGATCATATACGATGCATAGGATGATGGATAAGATATGATGATAATTATTCTACATTATG
385 CCTTAGG-TCATGTTTGATGCATAAGATGATGGATAAGATATGATGATAATTATTATATATTATG
* * * *
7722964 TTTGATTTGTATTTAAAGAAAATGATAGGATTACAAGGAGGATTAATCATCATCTTGGTATAGGA
449 TTTGGTTTGTATTT-AAGAAAAAGATAGGATTACAAGGAGAATTAATCATCCTCTTGGTATAGGA
* * * ** *
7723029 TAATTTAATTCTCCCAAAGTGGAGATG-ATTATTTTTAATCCATAAGATTGAACTTACGTGTCAT
513 TAATTTAATTCTTCCAAAGTGTAGA-GAATTATTTTTAATCCAT-AGATTAAACTTATATGTCCT
* * * *
7723093 ATTCTA-CTATTAAAAACTACATTAATAA-TTAAATTGTATAAACTTTAAAGAATGATAATTTTA
576 ATTCTACCT-TTAAAAATTATATCAATAATTTAAATTGTATAAACTTTAAAGAA-GATAATTTTG
* * * *
7723156 ATTAATAAATAAATTATCCTATTTTAATCATTACACATATCAAACATAAGATAAGATGACATTAT
639 A-TAAAAAATAAATTATCCTATATTAATCATTGCACACATCAAACATAAGATAAGATGACATTAT
* * * * * *
7723221 TTAATTTAATCATAATTATAATATCATCTTATCTTATCCTATTATAATCTTGTATACCAAACAT-
703 TTAATCTAATC-TTATTATAAT-TTATCTTATCTTATCTTATCA-AATCTTGTTTACCAAACATG
7723285 ATAC
765 A-AC
* * ** ** * *
7723289 TTAGGTCATATTTGGTACATAGGATGATAGATAAAATA-GAATGATACTCAT-TATTTATTATGT
1 TTAGGTCATGTTTGATGTATAGGATGATAGATATGATATG-ATGATAATCATCT-TATATTATGT
* * * * *
7723352 TTGATTTGCATATAAAGAAA-ATGAT-AGAATCATAAGGAAGATTAATCATCTTCTTAATATAAG
64 TTGATTTGTATATAAAGAAAGA-GATAAG-ATTATAAGGAAGATTAATCATCCTCTTGATATAGG
* * ** * *
7723415 ATGATTAAATCCTCCCAAAGTGGAAAGAATTATTTTTAAATCCATGAGATTAAACTTACATGTCA
127 ATGATTCAATCTTTTCAAAGT-GAGAGAATTATTTTT-AATCTATGAGATTAAACTTACATGTCA
* * * * * *
7723480 TATTATATCATTAAAAATTACATCAATAATTTAAATTGTATAAATTTTGAGGAACGG-TAATCTT
190 TATTATACCTTTAAAAATTATATCAATAATTTAAATTGTATAAATTTTGA-AAAAGGATAATTTT
* * * * * *
7723544 GATCAATAAATAAATTATCCTATCATGATCATTGCATATA-CAAACACAAGATATGATAGCAATA
254 GACCAATAAATAAATTAT-CTATCATAATCATTGCATATATCAAACACAAAATAGGATGGCATTA
* * * *
7723608 TTTAATTTAATCCTATTTATAATATTATTTTAT-C---T-TATTATAATCTTATGTACCAAATA-
318 TTTAATTTAATCATATTTATAATATTATTTTATCCTATTCTATCATAATCTTGTGTACCAAACAT
* ** * * * * *
7723667 CATCCTTAGATTTTGTTTTGATGCA-AATGATGATAGATAGGATAGGATGATAATCATCATATAT
383 CA-CCTTAGGTCATG-TTTGATGCATAA-GATGATGGATAAGATATGATGATAATTATTATATAT
* * * * * * * *
7723731 TATATTTGATTTGTATCTAATG-----GATAAGATTGCAAGGA-AGATTAATCATCTTTTTGATA
445 TATGTTTGGTTTGTATTTAA-GAAAAAGATAGGATTACAAGGAGA-ATTAATCATCCTCTTGGTA
* * * * ** * * *
7723790 TAGGATGATTCACTTC-TCTCAAAGTAG-AGAGGATTATTTTTAATTTATGAAATTAAATTTACA
508 TAGGATAATTTAATTCTTC-CAAAGT-GTAGAGAATTATTTTTAATCCAT-AGATTAAACTTATA
* * ** * *
7723853 TGTCCTGTTATACCTTTAAAAATTACGTTAATAATTTAAATTGTATAAACTTTGAGAA-AGGATA
570 TGTCCTATTCTACCTTTAAAAATTATATCAATAATTTAAATTGTATAAACTTT-A-AAGAAGATA
* ** * * * * *
7723917 ATTTTGATCAATAAATAAATTATTTTATCTTAATTC-TTGTACACATTAAACATAAAATAAGAAG
633 ATTTTGAT-AAAAAATAAATTATCCTATATTAA-TCATTGCACACATCAAACATAAGATAAGATG
* * * *
7723981 ATATTATTTATTTTAATCCTATTTATAAT
696 ACATTATTTAATCTAATCTTA-TTATAAT
7724010 ATCATGTTAT
Statistics
Matches: 1856, Mismatches: 336, Indels: 156
0.79 0.14 0.07
Matches are distributed among these distances:
765 2 0.00
766 104 0.06
767 97 0.05
768 11 0.01
769 227 0.12
770 192 0.10
771 249 0.13
772 8 0.00
773 243 0.13
774 495 0.27
775 160 0.09
776 65 0.04
777 3 0.00
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (767 bp):
TTAGGTCATGTTTGATGTATAGGATGATAGATATGATATGATGATAATCATCTTATATTATGTTT
GATTTGTATATAAAGAAAGAGATAAGATTATAAGGAAGATTAATCATCCTCTTGATATAGGATGA
TTCAATCTTTTCAAAGTGAGAGAATTATTTTTAATCTATGAGATTAAACTTACATGTCATATTAT
ACCTTTAAAAATTATATCAATAATTTAAATTGTATAAATTTTGAAAAAGGATAATTTTGACCAAT
AAATAAATTATCTATCATAATCATTGCATATATCAAACACAAAATAGGATGGCATTATTTAATTT
AATCATATTTATAATATTATTTTATCCTATTCTATCATAATCTTGTGTACCAAACATCACCTTAG
GTCATGTTTGATGCATAAGATGATGGATAAGATATGATGATAATTATTATATATTATGTTTGGTT
TGTATTTAAGAAAAAGATAGGATTACAAGGAGAATTAATCATCCTCTTGGTATAGGATAATTTAA
TTCTTCCAAAGTGTAGAGAATTATTTTTAATCCATAGATTAAACTTATATGTCCTATTCTACCTT
TAAAAATTATATCAATAATTTAAATTGTATAAACTTTAAAGAAGATAATTTTGATAAAAAATAAA
TTATCCTATATTAATCATTGCACACATCAAACATAAGATAAGATGACATTATTTAATCTAATCTT
ATTATAATTTATCTTATCTTATCTTATCAAATCTTGTTTACCAAACATGAAC
Found at i:7724770 original size:13 final size:13
Alignment explanation
Indices: 7724746--7724782 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7724736 ATATTATTTA
7724746 TTTTTATATAAAT
1 TTTTTATATAAAT
7724759 TATTTT-TATAAAT
1 T-TTTTATATAAAT
7724772 TTTTTAT-TAAA
1 TTTTTATATAAA
7724783 AAATTTACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 8 0.36
13 10 0.45
14 4 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTTATATAAAT
Found at i:7725867 original size:30 final size:29
Alignment explanation
Indices: 7725831--7725903 Score: 92
Period size: 30 Copynumber: 2.5 Consensus size: 29
7725821 GACGCCTGGC
* *
7725831 TAATATTATAAAATGGTTATTTTATTTTTT
1 TAATATTATAAAATGATTATTTTA-TCTTT
*
7725861 TAATATTGTAAAATGATTATTTTATCTTT
1 TAATATTATAAAATGATTATTTTATCTTT
**
7725890 TAATAAAATAAAAT
1 TAATATTATAAAAT
7725904 AAACTAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 15 0.41
30 22 0.59
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.52
Consensus pattern (29 bp):
TAATATTATAAAATGATTATTTTATCTTT
Found at i:7725901 original size:29 final size:30
Alignment explanation
Indices: 7725838--7725903 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
7725828 GGCTAATATT
* * **
7725838 ATAAAATGGTTATTTTATTTTTTTAATATT
1 ATAAAATGATTATTTTATTCTTTTAATAAA
*
7725868 GTAAAATGATTATTTTA-TCTTTTAATAAA
1 ATAAAATGATTATTTTATTCTTTTAATAAA
7725897 ATAAAAT
1 ATAAAAT
7725904 AAACTAAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 15 0.50
30 15 0.50
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.52
Consensus pattern (30 bp):
ATAAAATGATTATTTTATTCTTTTAATAAA
Found at i:7725932 original size:14 final size:15
Alignment explanation
Indices: 7725909--7725937 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7725899 AAAATAAACT
7725909 AAAATGTTAAAAATA
1 AAAATGTTAAAAATA
7725924 AAAAT-TTAAAAATA
1 AAAATGTTAAAAATA
7725938 TATTAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
AAAATGTTAAAAATA
Found at i:7726002 original size:149 final size:148
Alignment explanation
Indices: 7725701--7726002 Score: 313
Period size: 149 Copynumber: 2.0 Consensus size: 148
7725691 TAAAATAATT
* * * ** *
7725701 ATTTTATTTTTTTCAATATTATAAAATGATAATTTAAACCTTTAATAAGATAATATATTAATTTT
1 ATTTTATTTTTTTCAATATTATAAAATGATAATTTAAACCTTTAATAAAATAATAAACTAAAATG
* * *
7725766 TTAATAATAAAAAATTTAAAATAATATTAAAAGAATTTCTAAAGGATTATACCTTGACGCCTGGC
66 TTAAAAATAAAAAATTTAAAATAATATTAAAAGAATTCCTAAAGGATTATACCTTGACACCTGGC
* * ***
7725831 TAATATTATAAAATGGTT
131 TAACATCATAAAATGACC
* * * * *
7725849 ATTTTATTTTTTT-AATATTGTAAAATGATTATTTTATCTTTTAATAAAATAAAATAAACTAAAA
1 ATTTTATTTTTTTCAATATTATAAAATGATAATTTAAACCTTTAATAAAAT--AATAAACTAAAA
* **
7725913 TGTTAAAAAT-AAAAATTTAAAA-ATATATTAAAATAATTCCTAAAAGGATTATATTTTGACACC
64 TGTTAAAAATAAAAAATTTAAAATA-ATATTAAAAGAATTCCT-AAAGGATTATACCTTGACACC
** * *
7725976 TGTTTAACATCATTAAATTACC
127 TGGCTAACATCATAAAATGACC
7725998 ATTTT
1 ATTTT
7726003 GTCCCTTTCA
Statistics
Matches: 124, Mismatches: 26, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
147 32 0.26
148 40 0.32
149 52 0.42
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.42
Consensus pattern (148 bp):
ATTTTATTTTTTTCAATATTATAAAATGATAATTTAAACCTTTAATAAAATAATAAACTAAAATG
TTAAAAATAAAAAATTTAAAATAATATTAAAAGAATTCCTAAAGGATTATACCTTGACACCTGGC
TAACATCATAAAATGACC
Found at i:7732474 original size:19 final size:20
Alignment explanation
Indices: 7732437--7732478 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
7732427 TGAATTTAAT
*
7732437 TATATATTTTATTAGTTTTTA
1 TATATATTTTA-TAATTTTTA
7732458 TATATATTTTA-AATTTTTA
1 TATATATTTTATAATTTTTA
7732477 TA
1 TA
7732479 AAATAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
21 11 0.55
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TATATATTTTATAATTTTTA
Found at i:7732521 original size:20 final size:21
Alignment explanation
Indices: 7732496--7732550 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 21
7732486 ATAATTATTT
*
7732496 TATATTAAAATTTAT-TTAAA
1 TATATTAAAAATTATATTAAA
7732516 TATATTAAAAATTATATTAAAA
1 TATATTAAAAATTATATT-AAA
7732538 TAATATATAAAAA
1 T-ATAT-TAAAAA
7732551 ATAAAAATTC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 14 0.47
21 2 0.07
22 4 0.13
23 4 0.13
24 6 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TATATTAAAAATTATATTAAA
Found at i:7732533 original size:12 final size:12
Alignment explanation
Indices: 7732495--7732552 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 12
7732485 AATAATTATT
7732495 TTATATT-AAAA
1 TTATATTAAAAA
*
7732506 TT-TATT-TAAA
1 TTATATTAAAAA
7732516 -TATATTAAAAA
1 TTATATTAAAAA
7732527 TTATATTAAAATA
1 TTATATTAAAA-A
* *
7732540 ATATATAAAAAA
1 TTATATTAAAAA
7732552 T
1 T
7732553 AAAAATTCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
9 1 0.03
10 11 0.29
11 5 0.13
12 11 0.29
13 10 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
TTATATTAAAAA
Found at i:7734053 original size:23 final size:23
Alignment explanation
Indices: 7734023--7734076 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
7734013 CTTTCAAGGG
7734023 TTTTCTATATGTGTTTATATTTA
1 TTTTCTATATGTGTTTATATTTA
7734046 TTTTCTATATGTGTTTATATTTA
1 TTTTCTATATGTGTTTATATTTA
7734069 TTTTCTAT
1 TTTTCTAT
7734077 TAAAAAAGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.20, C:0.06, G:0.07, T:0.67
Consensus pattern (23 bp):
TTTTCTATATGTGTTTATATTTA
Found at i:7736216 original size:25 final size:24
Alignment explanation
Indices: 7736160--7736215 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
7736150 ATTAATTTTC
7736160 TTAATTTTCTTTAAAAACATATTT
1 TTAATTTTCTTTAAAAACATATTT
7736184 TTAATTTTCTTTAAAAACATATTT
1 TTAATTTTCTTTAAAAACATATTT
7736208 TTAATTTT
1 TTAATTTT
7736216 TAGTAAGCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (24 bp):
TTAATTTTCTTTAAAAACATATTT
Found at i:7738218 original size:22 final size:21
Alignment explanation
Indices: 7738176--7738222 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
7738166 AACTTTATAT
7738176 TTTTTTTTAGCAATTTTTTTCC
1 TTTTTTTTAGCAATTTTTTT-C
7738198 TTTTTTTTA-C-ATCTTTCTTTC
1 TTTTTTTTAGCAAT-TTT-TTTC
7738219 TTTT
1 TTTT
7738223 CTTCAGCCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
20 2 0.09
21 9 0.39
22 12 0.52
ACGTcount: A:0.11, C:0.15, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTTTTTAGCAATTTTTTTC
Found at i:7739045 original size:145 final size:144
Alignment explanation
Indices: 7738749--7739290 Score: 590
Period size: 145 Copynumber: 3.7 Consensus size: 144
7738739 TTAAAATACA
* * * * * * *
7738749 AAAAATCATGAAATATTATAAAATTAAAATCTGAAAAGTTTCATGAAAATCCAAGCTTGAAAAAG
1 AAAAATCATAAAATATTATGAAATTAAGATTTAAAAAGTTTCATAAAAAT-CAAGCTAGAAAAAG
* * * * *
7738814 -CTAAATTACGAAAATACCCCTATAAGG-TATTCTAGTAATTTCACATTTTTGAGGGTACAACTA
65 TC-AAATTATGAAAATACCCTTATAAGGATATTTTAGTAATTTCACATTTTTCAGGGTACTACTA
7738877 TGATTTCAAATGCACT
129 TGATTTCAAATGCACT
* * *
7738893 AAAAATTATAAAATATTATGAAATTAAGATTTAAAAAGTTTCATAAAAATCAGAGCTAGGAAAGG
1 AAAAATCATAAAATATTATGAAATTAAGATTTAAAAAGTTTCATAAAAATCA-AGCTAGAAAAAG
* * * *
7738958 TCAAATTATGAAAATACCATTAT-AGGAAAATTTTAGTAATTTCACATTTCTCAGGGTGCTACTA
65 TCAAATTATGAAAATACCCTTATAAGG-ATATTTTAGTAATTTCACATTTTTCAGGGTACTACTA
*
7739022 TGATTTCAAATGCACC
129 TGATTTCAAATGCACT
* * *
7739038 AAAAATTATGAAATATTATGAAATTAAGATTTAAAAAGTTTCATAAAAATTCAAGCTCGAAAAAG
1 AAAAATCATAAAATATTATGAAATTAAGATTTAAAAAGTTTCATAAAAA-TCAAGCTAGAAAAAG
* * * * *
7739103 TTAAATTATGAAAATACCCTTATAAGGATATTTTTGTAATTTTATATTTTTCGGGGTACTACTAT
65 TCAAATTATGAAAATACCCTTATAAGGATATTTTAGTAATTTCACATTTTTCAGGGTACTACTAT
**
7739168 GATTTCAAATATACT
130 GATTTCAAATGCACT
* ** ** *
7739183 AAAAATCATAAAAATATTATGAAATTAAGGTTTGGAAAGTTTCATGAAATTTCAAGCTTAGAAAC
1 AAAAATCAT-AAAATATTATGAAATTAAGATTTAAAAAGTTTCAT-AAAAATCAAGC-TAGAAAA
* * * * * *
7739248 A-CCAAATTAT-AAAAGTACCTTTATAGGGGTATATTGGTAATTT
63 AGTCAAATTATGAAAA-TACCCTTATAAGGATATTTTAGTAATTT
7739291 TGCACTTTCT
Statistics
Matches: 336, Mismatches: 52, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
143 5 0.01
144 70 0.21
145 179 0.53
146 73 0.22
147 9 0.03
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.33
Consensus pattern (144 bp):
AAAAATCATAAAATATTATGAAATTAAGATTTAAAAAGTTTCATAAAAATCAAGCTAGAAAAAGT
CAAATTATGAAAATACCCTTATAAGGATATTTTAGTAATTTCACATTTTTCAGGGTACTACTATG
ATTTCAAATGCACT
Found at i:7739425 original size:20 final size:21
Alignment explanation
Indices: 7739397--7739435 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
7739387 AATCGACCCT
7739397 AGTTCTATTC-ATTTTGATTA
1 AGTTCTATTCGATTTTGATTA
*
7739417 AGTTTTATTCGATTTTGAT
1 AGTTCTATTCGATTTTGAT
7739436 CAGAGTTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.23, C:0.08, G:0.13, T:0.56
Consensus pattern (21 bp):
AGTTCTATTCGATTTTGATTA
Found at i:7739806 original size:37 final size:37
Alignment explanation
Indices: 7739765--7739848 Score: 114
Period size: 37 Copynumber: 2.3 Consensus size: 37
7739755 TTTTAACTTG
* **
7739765 TTTGAAAATTGCTTACCTTAAACAGAGGCTTTAAAAC
1 TTTGAAAATTGCTCACCCCAAACAGAGGCTTTAAAAC
* * *
7739802 TTTGAAAATAGCTCCCCCCAAACAGAGGCTTTGAAAC
1 TTTGAAAATTGCTCACCCCAAACAGAGGCTTTAAAAC
7739839 TTTGAAAATT
1 TTTGAAAATT
7739849 TAAAATATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (37 bp):
TTTGAAAATTGCTCACCCCAAACAGAGGCTTTAAAAC
Found at i:7740025 original size:105 final size:102
Alignment explanation
Indices: 7739835--7740387 Score: 479
Period size: 105 Copynumber: 5.3 Consensus size: 102
7739825 AGAGGCTTTG
* * * * * * *
7739835 AAACTTTGAAAATTTAAAATATTTTGCTTAAAGGTCTTGAAGATTAT-ACTCGGAGGTCTTATAA
1 AAACTTTAAAAATTTAAAATGTTTTGCTTGAAGGTTTTGAAGATTATGTC-CGAAGGTCTTACAA
* ** * * **
7739899 AACTTAAAATCTTTGAATGCTCTTCTCAATCAAAGGCGTT
65 ATCTCGACATCTTTGAATGCTCCTC-CAAT-AAAGGTATT
*
7739939 AATTCTTTAAAAATTTAAAATGTTTTGCTTGAAGGTTTTGAAGATTATGTCCGAAGGTCTTACAA
1 AA-ACTTTAAAAATTTAAAATGTTTTGCTTGAAGGTTTTGAAGATTATGTCCGAAGGTCTTACAA
* *
7740004 ATCTCGACATCTTCGAATGCTCATCCTAATAAGAGGTATT
65 ATCTCGACATCTTTGAATGCTCCTCC-AATAA-AGGTATT
* ** * *
7740044 AAAACTTTAAAACTTTAAAATAG-TTTGCTCAAAGGTTTT-AGAGATTA-GGCCTAGAGGTCTTA
1 -AAACTTTAAAAATTTAAAAT-GTTTTGCTTGAAGGTTTTGA-AGATTATGTCCGA-AGGTCTTA
* *
7740106 CAAATATCAACATCTTTGAATGCTCCTGCCAATAAAAGGTATT
62 CAAATCTCGACATCTTTGAATGCTCCT-CCAAT-AAAGGTATT
* ** * *
7740149 GAAACTTTAAAAATTTAAAATGTTTTGCCTGGGGGTTCTT-AGAGATTATGTCTGAAGGTCTTAT
1 -AAACTTTAAAAATTTAAAATGTTTTGCTTGAAGGTT-TTGA-AGATTATGTCCGAAGGTCTTAC
7740213 AAATCTCGACATCTTTGAATGCTCCTCCTAATAAGAGGTATT
63 AAATCTCGACATCTTTGAATGCTCCTCC-AATAA-AGGTATT
* * ** * * * ** *
7740255 AAAACTTTGAAAATTTAAAATGGTTTGCCCGGAGGTCTTGGAGATTATG-CCTGAATATTTTACA
1 -AAACTTTAAAAATTTAAAATGTTTTGCTTGAAGGTTTTGAAGATTATGTCC-GAAGGTCTTACA
* * *
7740319 AATCTCGACATCTTTGAATACTCCTCCCAATCAGAGGTAATG
64 AATCTCGACATCTTTGAATGCTCCT-CCAAT-AAAGGT-ATT
7740361 AAACTTTAAAAATTTAAAATGGTTTTG
1 AAACTTTAAAAATTTAAAAT-GTTTTG
7740388 GAAATATATA
Statistics
Matches: 372, Mismatches: 56, Indels: 40
0.79 0.12 0.09
Matches are distributed among these distances:
104 12 0.03
105 256 0.69
106 101 0.27
107 3 0.01
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (102 bp):
AAACTTTAAAAATTTAAAATGTTTTGCTTGAAGGTTTTGAAGATTATGTCCGAAGGTCTTACAAA
TCTCGACATCTTTGAATGCTCCTCCAATAAAGGTATT
Found at i:7740238 original size:106 final size:105
Alignment explanation
Indices: 7739943--7740387 Score: 524
Period size: 105 Copynumber: 4.2 Consensus size: 105
7739933 GGCGTTAATT
*
7739943 CTTTAAAAATTTAAAATGTTTTGCTTGAAGGTTTT-GAAGATTATGTCC-GAAGGTCTTACAAAT
1 CTTTAAAAATTTAAAATGTTTTGCCTGAAGGTTTTAG-AGATTATG-CCTGAAGGTCTTACAAAT
* *
7740006 CTCGACATCTTCGAATGCTCATCCTAATAAGAGGTATTAAAA
64 CTCGACATCTTTGAATGCTCCTCCTAATAAGAGGTATTAAAA
* * *
7740048 CTTTAAAACTTTAAAATAG-TTTG-CTCAAAGGTTTTAGAGATTAGGCCT-AGAGGTCTTACAAA
1 CTTTAAAAATTTAAAAT-GTTTTGCCT-GAAGGTTTTAGAGATTATGCCTGA-AGGTCTTACAAA
* * * *
7740110 TATCAACATCTTTGAATGCTCCTGCC-AATAAAAGGTATTGAAA
63 TCTCGACATCTTTGAATGCTCCT-CCTAATAAGAGGTATTAAAA
** * *
7740153 CTTTAAAAATTTAAAATGTTTTGCCTGGGGGTTCTTAGAGATTATGTCTGAAGGTCTTATAAATC
1 CTTTAAAAATTTAAAATGTTTTGCCTGAAGGTT-TTAGAGATTATGCCTGAAGGTCTTACAAATC
7740218 TCGACATCTTTGAATGCTCCTCCTAATAAGAGGTATTAAAA
65 TCGACATCTTTGAATGCTCCTCCTAATAAGAGGTATTAAAA
* * * * * * ** *
7740259 CTTTGAAAATTTAAAATGGTTTGCCCGGAGGTCTTGGAGATTATGCCTGAATATTTTACAAATCT
1 CTTTAAAAATTTAAAATGTTTTGCCTGAAGGTTTTAGAGATTATGCCTGAAGGTCTTACAAATCT
* * * * *
7740324 CGACATCTTTGAATACTCCTCCCAATCAGAGGTAATGAAA
66 CGACATCTTTGAATGCTCCTCCTAATAAGAGGTATTAAAA
7740364 CTTTAAAAATTTAAAATGGTTTTG
1 CTTTAAAAATTTAAAAT-GTTTTG
7740388 GAAATATATA
Statistics
Matches: 289, Mismatches: 39, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
104 5 0.02
105 184 0.64
106 99 0.34
107 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (105 bp):
CTTTAAAAATTTAAAATGTTTTGCCTGAAGGTTTTAGAGATTATGCCTGAAGGTCTTACAAATCT
CGACATCTTTGAATGCTCCTCCTAATAAGAGGTATTAAAA
Found at i:7740257 original size:211 final size:210
Alignment explanation
Indices: 7739943--7740387 Score: 608
Period size: 211 Copynumber: 2.1 Consensus size: 210
7739933 GGCGTTAATT
*
7739943 CTTTAAAAATTTAAAATGTTTTGCTTGAAGGTTTTGAAGATTATGTCCGAAGGTCTTACAAATCT
1 CTTTAAAAATTTAAAATGTTTTGCCTGAAGGTTTTGAAGATTATGTCCGAAGGTCTTACAAATCT
7740008 CGACATCTTCGAATGCTCATCCTAATAAGAGGTATTAAAACTTT-AAAACTTTAAAATAGTTTGC
66 CGACATCTTCGAATGCTCATCCTAATAAGAGGTATTAAAACTTTGAAAA-TTTAAAATAGTTTGC
* * * * *
7740072 TCAAAGGTTTTAGAGATTAGGCCT-AGAGGTCTTACAAATATCAACATCTTTGAATGCTCCTGCC
130 CCAAAGGTCTTAGAGATTAGGCCTGA-AGATCTTACAAATATCAACATCTTTGAATACTCCTCCC
*
7740136 AATAAAAGGTATTGAAA
194 AATAAAAGGTAATGAAA
** * *
7740153 CTTTAAAAATTTAAAATGTTTTGCCTGGGGGTTCTT-AGAGATTATGTCTGAAGGTCTTATAAAT
1 CTTTAAAAATTTAAAATGTTTTGCCTGAAGGTT-TTGA-AGATTATGTCCGAAGGTCTTACAAAT
* * *
7740217 CTCGACATCTTTGAATGCTCCTCCTAATAAGAGGTATTAAAACTTTGAAAATTTAAAATGGTTTG
64 CTCGACATCTTCGAATGCTCATCCTAATAAGAGGTATTAAAACTTTGAAAATTTAAAATAGTTTG
** * * * * * *
7740282 CCCGGAGGTCTTGGAGATTATGCCTGAATATTTTACAAATCTCGACATCTTTGAATACTCCTCCC
129 CCCAAAGGTCTTAGAGATTAGGCCTGAAGATCTTACAAATATCAACATCTTTGAATACTCCTCCC
* *
7740347 AATCAGAGGTAATGAAA
194 AATAAAAGGTAATGAAA
7740364 CTTTAAAAATTTAAAATGGTTTTG
1 CTTTAAAAATTTAAAAT-GTTTTG
7740388 GAAATATATA
Statistics
Matches: 206, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
210 31 0.15
211 164 0.80
212 11 0.05
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (210 bp):
CTTTAAAAATTTAAAATGTTTTGCCTGAAGGTTTTGAAGATTATGTCCGAAGGTCTTACAAATCT
CGACATCTTCGAATGCTCATCCTAATAAGAGGTATTAAAACTTTGAAAATTTAAAATAGTTTGCC
CAAAGGTCTTAGAGATTAGGCCTGAAGATCTTACAAATATCAACATCTTTGAATACTCCTCCCAA
TAAAAGGTAATGAAA
Found at i:7740913 original size:41 final size:41
Alignment explanation
Indices: 7740853--7740931 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
7740843 AATGTGAGTG
** * * *
7740853 ATGCAAATGTGAATGTCTTTCTTGTGATATATATGTAAGCA
1 ATGCAAATGCAAATATCTTTCTTATGATATAAATGTAAGCA
* *
7740894 ATGCAAATGCAAATATCTTTTTTATGATGTAAATGTAA
1 ATGCAAATGCAAATATCTTTCTTATGATATAAATGTAA
7740932 ATGCAAATGT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.39
Consensus pattern (41 bp):
ATGCAAATGCAAATATCTTTCTTATGATATAAATGTAAGCA
Found at i:7740935 original size:32 final size:32
Alignment explanation
Indices: 7740893--7740956 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
7740883 ATATGTAAGC
* *
7740893 AATGCAAATGCAAATATCTTTTTTATGATGTA
1 AATGCAAATGCAAATATCTTTCTCATGATGTA
* *
7740925 AATGTAAATGCAAATGTCTTTCTCATGATGTA
1 AATGCAAATGCAAATATCTTTCTCATGATGTA
7740957 CCTACAAGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (32 bp):
AATGCAAATGCAAATATCTTTCTCATGATGTA
Found at i:7741025 original size:43 final size:43
Alignment explanation
Indices: 7740977--7741059 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
7740967 CGAATACGAT
*
7740977 TGATACAAATACGAATATCTTTTTTTTGTGATGCAGATGCTAG
1 TGATACAAATACGAATATCTTTTTTTTGTGATGCAAATGCTAG
* *
7741020 TGATACTAATACGAATATTTTTTTTTTGTGATGCAAATGC
1 TGATACAAATACGAATATCTTTTTTTTGTGATGCAAATGC
7741060 AAGTAATGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (43 bp):
TGATACAAATACGAATATCTTTTTTTTGTGATGCAAATGCTAG
Found at i:7741086 original size:43 final size:44
Alignment explanation
Indices: 7740989--7741087 Score: 107
Period size: 43 Copynumber: 2.3 Consensus size: 44
7740979 ATACAAATAC
* * *
7740989 GAATATCTTTTTTTTGTGATGCAGATGCTAGTGATACTAATACGA
1 GAAT-TCTTTTTTTTGTGATGCAAATGCAAGTAATACTAATACGA
*
7741034 -ATATT-TTTTTTTTGTGATGCAAATGCAAGTAATGC-AA-ACGA
1 GA-ATTCTTTTTTTTGTGATGCAAATGCAAGTAATACTAATACGA
7741075 GAATGTCTTTTTT
1 GAAT-TCTTTTTT
7741088 ATAATGTAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
41 6 0.13
42 4 0.09
43 32 0.70
44 2 0.04
45 2 0.04
ACGTcount: A:0.29, C:0.10, G:0.18, T:0.42
Consensus pattern (44 bp):
GAATTCTTTTTTTTGTGATGCAAATGCAAGTAATACTAATACGA
Found at i:7741089 original size:171 final size:173
Alignment explanation
Indices: 7740909--7741219 Score: 419
Period size: 171 Copynumber: 1.8 Consensus size: 173
7740899 AATGCAAATA
* * * *
7740909 TCTTTTTTATGATGTAAATGTAAATGCAAATGTCTTTCTCATGATGTACCTACAAGTACGAATAC
1 TCTTTTTTATAATGTAAATGTAAATGCAAATGTCTTTCTCATAATGCACATACAAGTACGAATAC
* * * * *
7740974 GATTGATACAAATACGAATATC-TTTTTTTTGTGATGCAGATGCTAGTGATACTAATACGAATAT
66 AAGTGATACAAATACGAATATCTTTTTTTTTGTGATACAGATGCAAGTGATACAAATACGAATAT
7741038 -TTTTTTTTTGTGATGCAAATGCAAGTAATGCAAACGAGAATG
131 CTTTTTTTTTGTGATGCAAATGCAAGTAATGCAAACGAGAATG
* * * * *
7741080 TCTTTTTTATAATGTAAATGTGAATGCAAATGTCTTTTTCATAATGCACATGCAAGTATGAATGC
1 TCTTTTTTATAATGTAAATGTAAATGCAAATGTCTTTCTCATAATGCACATACAAGTACGAATAC
* * * * * * *
7741145 AAGTGATGCAAATATGAATATCTTTTTTTTTTTTATATAGATGCAAGTGATGCAAATATGAATAT
66 AAGTGATACAAATACGAATATCTTTTTTTTTGTGATACAGATGCAAGTGATACAAATACGAATAT
7741210 CTTTTTTTTT
131 CTTTTTTTTT
7741220 TTTATATAGA
Statistics
Matches: 117, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
171 74 0.63
172 34 0.29
173 9 0.08
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.41
Consensus pattern (173 bp):
TCTTTTTTATAATGTAAATGTAAATGCAAATGTCTTTCTCATAATGCACATACAAGTACGAATAC
AAGTGATACAAATACGAATATCTTTTTTTTTGTGATACAGATGCAAGTGATACAAATACGAATAT
CTTTTTTTTTGTGATGCAAATGCAAGTAATGCAAACGAGAATG
Found at i:7741261 original size:44 final size:44
Alignment explanation
Indices: 7741141--7741245 Score: 210
Period size: 44 Copynumber: 2.4 Consensus size: 44
7741131 GCAAGTATGA
7741141 ATGCAAGTGATGCAAATATGAATATCTTTTTTTTTTTTATATAG
1 ATGCAAGTGATGCAAATATGAATATCTTTTTTTTTTTTATATAG
7741185 ATGCAAGTGATGCAAATATGAATATCTTTTTTTTTTTTATATAG
1 ATGCAAGTGATGCAAATATGAATATCTTTTTTTTTTTTATATAG
7741229 ATGCAAGTGATGCAAAT
1 ATGCAAGTGATGCAAAT
7741246 GCAAATATTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (44 bp):
ATGCAAGTGATGCAAATATGAATATCTTTTTTTTTTTTATATAG
Found at i:7741268 original size:37 final size:38
Alignment explanation
Indices: 7741215--7741296 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 38
7741205 AATATCTTTT
* * *
7741215 TTTTTTTTATATAGATGCAAGTGATGCAAATGCAAATA
1 TTTTTTTTATACAGATGCAAGCGATACAAATGCAAATA
*
7741253 TTTTTTTT-TACAGATGCAAGCGATACAAATGCGAATA
1 TTTTTTTTATACAGATGCAAGCGATACAAATGCAAATA
7741290 TTTTTTT
1 TTTTTTT
7741297 ATGATGTAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 32 0.80
38 8 0.20
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (38 bp):
TTTTTTTTATACAGATGCAAGCGATACAAATGCAAATA
Found at i:7741451 original size:128 final size:127
Alignment explanation
Indices: 7741290--7741625 Score: 306
Period size: 127 Copynumber: 2.7 Consensus size: 127
7741280 AATGCGAATA
* ** * * * *
7741290 TTTTTTTATGATGTAG--ATGAATGCAAATATCTTTCTTATGATGTA-CCTGTAAGTACGAATAT
1 TTTTTTTATGATGCAGATATGAATATAAATGTCTTTCTTATGATGCAGAC-GTAAGTACGAATAC
* * * * * ** * *
7741352 GAGTGATACAAATACGAATATCTTTTTTTTTGTTATGCAAATACAAGTGATGTAAATGTGAAAGT
65 AAATGATACAAATACAAATAT-ATTTCTCATG--ATGCAAATACAAGTAATGCAAATGTGAAAGT
7741417 -
127 C
*
7741417 TTTTTTGT-T-ATGCAGATATGAATATAAATGTCTTTCTTATGATGCAGACGTAAGTACGAATGC
1 TTTTTT-TATGATGCAGATATGAATATAAATGTCTTTCTTATGATGCAGACGTAAGTACGAATAC
* ** * *
7741480 AAATGATGCAAATGTAAATATATTTCTCATGATGCAGATACAAGTAATGCAAATGTGAATGTC
65 AAATGATACAAATACAAATATATTTCTCATGATGCAAATACAAGTAATGCAAATGTGAAAGTC
* * * ** * * *
7741543 TTTTTTTATGATGCAGATGTGAATATAAATGTCCTTCTTATGATGCATATATAAGTATGAATGCG
1 TTTTTTTATGATGCAGATATGAATATAAATGTCTTTCTTATGATGCAGACGTAAGTACGAATACA
*
7741608 AATGATGCAAATACAAAT
66 AATGATACAAATACAAAT
7741626 GTCCTTTTTG
Statistics
Matches: 171, Mismatches: 31, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
125 28 0.16
126 12 0.07
127 77 0.45
128 53 0.31
129 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.38
Consensus pattern (127 bp):
TTTTTTTATGATGCAGATATGAATATAAATGTCTTTCTTATGATGCAGACGTAAGTACGAATACA
AATGATACAAATACAAATATATTTCTCATGATGCAAATACAAGTAATGCAAATGTGAAAGTC
Found at i:7741588 original size:127 final size:125
Alignment explanation
Indices: 7741386--7741619 Score: 335
Period size: 127 Copynumber: 1.9 Consensus size: 125
7741376 TTTTTTTGTT
* * *
7741386 ATGCAAATACAAGTGATGTAAATGTGAAAGTTTTTTTGTTATGCAGATATGAATATAAATGTCTT
1 ATGCAAATACAAGTAATGCAAATGTGAAAGTTTTTTTGTTATGCAGATATGAATATAAATGTCCT
*
7741451 TCTTATGATGCAGACGTAAGTACGAATGCAAATGATGCAAATGTAAATATATTTCTCATG
66 TCTTATGATGCAGACATAAGTACGAATGCAAATGATGCAAATGTAAATATATTTCTCATG
* * *
7741511 ATGCAGATACAAGTAATGCAAATGTGAATGTCTTTTTT-TATGATGCAGATGTGAATATAAATGT
1 ATGCAAATACAAGTAATGCAAATGTGAAAGT-TTTTTTGT-T-ATGCAGATATGAATATAAATGT
* * * *
7741575 CCTTCTTATGATGCATATATAAGTATGAATGCGAATGATGCAAAT
63 CCTTCTTATGATGCAGACATAAGTACGAATGCAAATGATGCAAAT
7741620 ACAAATGTCC
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
125 28 0.29
126 7 0.07
127 60 0.63
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (125 bp):
ATGCAAATACAAGTAATGCAAATGTGAAAGTTTTTTTGTTATGCAGATATGAATATAAATGTCCT
TCTTATGATGCAGACATAAGTACGAATGCAAATGATGCAAATGTAAATATATTTCTCATG
Found at i:7741640 original size:127 final size:124
Alignment explanation
Indices: 7741378--7741641 Score: 314
Period size: 127 Copynumber: 2.1 Consensus size: 124
7741368 AATATCTTTT
* * *
7741378 TTTTTGTTATGCAAATACAAGTGATGTAAATGTGAAAGTTTTTTTGTTATGCAGATATGAATATA
1 TTTTTGTGATGCAAATACAAGTAATGCAAATGTGAAAGTTTTTTTGTTATGCAGATATGAATATA
* * **
7741443 AATGTCTTTCTTATGATGCAGACGTAAGTACGAATGCAAATGATGCAAATGTAAATATA
66 AATGTCCTTCTTATGATGCAGACATAAGTACGAATGCAAATGATGCAAATACAAATATA
** * * *
7741502 TTTCTCATGATGCAGATACAAGTAATGCAAATGTGAATGTCTTTTTT-TATGATGCAGATGTGAA
1 TTT-TTGTGATGCAAATACAAGTAATGCAAATGTGAAAGT-TTTTTTGT-T-ATGCAGATATGAA
* * * * * *
7741566 TATAAATGTCCTTCTTATGATGCATATATAAGTATGAATGCGAATGATGCAAATACAAATGTCC
62 TATAAATGTCCTTCTTATGATGCAGACATAAGTACGAATGCAAATGATGCAAATACAAATAT-A
7741630 TTTTTGTGATGC
1 TTTTTGTGATGC
7741642 TGATGCTAAT
Statistics
Matches: 115, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
124 3 0.03
125 30 0.26
126 7 0.06
127 72 0.63
128 3 0.03
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (124 bp):
TTTTTGTGATGCAAATACAAGTAATGCAAATGTGAAAGTTTTTTTGTTATGCAGATATGAATATA
AATGTCCTTCTTATGATGCAGACATAAGTACGAATGCAAATGATGCAAATACAAATATA
Found at i:7741804 original size:68 final size:69
Alignment explanation
Indices: 7741732--7742010 Score: 221
Period size: 68 Copynumber: 4.1 Consensus size: 69
7741722 TTGAGCTTAA
* * * *
7741732 CTTTGGGTGCCAGCAAAGCTGGGCTTAAAATTTTTATCAGGTGTTTGGTAAA-TTGGCTTAAAAT
1 CTTTGGGTGCCAGCTAAGCTAGGCTTAAAATTTTTATCAGGTATTAGGTAAACTTGGCTTAAAAT
7741796 CTTT
66 CTTT
* * * *
7741800 CTTTGAGAGCCAGCTAAGCTAGGCTTCAAAATCTTTATCAGGTATTAGGTAAACTTTGCTTAAAA
1 CTTTGGGTGCCAGCTAAGCTAGGCTT-AAAATTTTTATCAGGTATTAGGTAAACTTGGCTTAAAA
7741865 TCTTT
65 TCTTT
* * * * * *
7741870 -TTTGGGTGTC-GGTAAGCTAGGCTTAAAATTTTCATTAAAGG--TTAGATAAACTAGGCTT-AA
1 CTTTGGGTGCCAGCTAAGCTAGGCTTAAAATTTTTA-T-CAGGTATTAGGTAAACTTGGCTTAAA
7741930 AT-TTT
64 ATCTTT
* * * * * * * * * * * * *
7741935 CATTGGGAGCCAACTAAACTAAGCTTTAAAATTTTCATTAAGTGTCAAGTAAACTGGGTTTAAAA
1 CTTTGGGTGCCAGCTAAGCTAGGC-TTAAAATTTTTATCAGGTATTAGGTAAACTTGGCTTAAAA
*
7742000 TTTTT
65 TCTTT
7742005 CTTTGG
1 CTTTGG
7742011 TGTAAGATAA
Statistics
Matches: 167, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
65 3 0.02
66 13 0.08
67 31 0.19
68 60 0.36
69 37 0.22
70 23 0.14
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (69 bp):
CTTTGGGTGCCAGCTAAGCTAGGCTTAAAATTTTTATCAGGTATTAGGTAAACTTGGCTTAAAAT
CTTT
Found at i:7741852 original size:69 final size:68
Alignment explanation
Indices: 7741740--7741898 Score: 196
Period size: 69 Copynumber: 2.3 Consensus size: 68
7741730 AACTTTGGGT
* * * * *
7741740 GCCAGCAAAGCTGGGCTTAAAATTTTTATCAGGTGTTTGGTAAA-TTGGCTTAAAATCTTTCTTT
1 GCCAGCTAAGCTAGGCTTAAAATCTTTATCAGGTATTAGGTAAACTTGGCTTAAAATCTTT-TTT
7741804 GAGA
65 GAGA
*
7741808 GCCAGCTAAGCTAGGCTTCAAAATCTTTATCAGGTATTAGGTAAACTTTGCTTAAAATCTTTTTT
1 GCCAGCTAAGCTAGGCTT-AAAATCTTTATCAGGTATTAGGTAAACTTGGCTTAAAATCTTTTTT
* *
7741873 GGGT
65 GAGA
* *
7741877 GTC-GGTAAGCTAGGCTTAAAAT
1 GCCAGCTAAGCTAGGCTTAAAAT
7741899 TTTCATTAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
67 5 0.06
68 29 0.37
69 30 0.38
70 15 0.19
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.36
Consensus pattern (68 bp):
GCCAGCTAAGCTAGGCTTAAAATCTTTATCAGGTATTAGGTAAACTTGGCTTAAAATCTTTTTTG
AGA
Found at i:7741998 original size:102 final size:101
Alignment explanation
Indices: 7741892--7742345 Score: 375
Period size: 102 Copynumber: 4.4 Consensus size: 101
7741882 TAAGCTAGGC
* * * **
7741892 TTAAAATTTTCATTAAAGGTTAGATAAACTAGGCTTAAATTTTCATTGGGAGCCAACTAAACTAA
1 TTAAAATTTTCATT-AGGGTCAGATAAACTAGGCTTAAATTTTCATTGAGAGCCAACTAAACTGG
*
7741957 GCTTTAAAATTTTCATTAAGTG-TCAAGTAAACTGGGT
65 GCTTTAAAATCTTCATTAAGTGCT-AAGTAAACTGGGT
* * * * *
7741994 TTAAAATTTTTC-TTTGGTGTAAGATAAATTGGGCTTAAAATTTCATT-AGAGGCCAGA-TAAAC
1 TTAAAA-TTTTCATTAGG-GTCAGATAAACTAGGCTTAAATTTTCATTGAGA-GCCA-ACTAAAC
* * * * * *
7742056 TGGGC-TCAAAATCTTTA-TCAGTTGCTAGGTAAATTGGGC
62 TGGGCTTTAAAATCTTCATTAAG-TGCTAAGTAAACTGGGT
* * * * * * * *
7742095 TTAAAATTTTTATTAGGGACCATATAAACTCGGCTTAAATTTTTACTGAGAGCCAGCTAAGCTGG
1 TTAAAATTTTCATTAGGG-TCAGATAAACTAGGCTTAAATTTTCATTGAGAGCCAACTAAACTGG
* * *
7742160 GCTTTAAAATCTTCATTAGGTGC-CAGATAAATTGGGT
65 GCTTTAAAATCTTCATTAAGTGCTAAG-TAAACTGGGT
* * * * *
7742197 TAAAAATTTTCATCAAGGGTCAAATAAATTAGGCTTAAATTTTCATTGAGAGCTAACTAAACTGG
1 TTAAAATTTTCAT-TAGGGTCAGATAAACTAGGCTTAAATTTTCATTGAGAGCCAACTAAACTGG
* *
7742262 GCTTTAAAATCTTCATCAAGTGCTAGGTAAACTGGGT
65 GCTTTAAAATCTTCATTAAGTGCTAAGTAAACTGGGT
* * * * *
7742299 TTAAAATCTTT-ATCAGGTGCCAGATAAATTGGGTTTAAAATTTTCAT
1 TTAAAAT-TTTCATTAGG-GTCAGATAAACTAGGCTT-AAATTTTCAT
7742346 CAGGGGCTGG
Statistics
Matches: 276, Mismatches: 58, Indels: 35
0.75 0.16 0.09
Matches are distributed among these distances:
100 8 0.03
101 71 0.26
102 171 0.62
103 26 0.09
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (101 bp):
TTAAAATTTTCATTAGGGTCAGATAAACTAGGCTTAAATTTTCATTGAGAGCCAACTAAACTGGG
CTTTAAAATCTTCATTAAGTGCTAAGTAAACTGGGT
Found at i:7742057 original size:67 final size:68
Alignment explanation
Indices: 7741960--7742472 Score: 229
Period size: 68 Copynumber: 7.6 Consensus size: 68
7741950 AAACTAAGCT
* * * * * **
7741960 TTAAAATTTTCATTAAGTGTCAAG-TAAACTGGGTTTAAAATTTTTCTTTGGTG-TAAGATAAAT
1 TTAAAATTTTCATT-AGGGACCAGATAAACTGGGCTTAAAATTTTTATCAGGTGCT-AGATAAAT
7742023 TGGGC
64 TGGGC
* * * *
7742028 TTAAAA-TTTCATTAGAGG-CCAGATAAACTGGGCTCAAAATCTTTATCAGTTGCTAGGTAAATT
1 TTAAAATTTTCATTAG-GGACCAGATAAACTGGGCTTAAAATTTTTATCAGGTGCTAGATAAATT
7742091 GGGC
65 GGGC
* * * * * * * **
7742095 TTAAAATTTTTATTAGGGACCATATAAACTCGGCTT-AAATTTTTA-CTGAGAGCCAGCTAAGCT
1 TTAAAATTTTCATTAGGGACCAGATAAACTGGGCTTAAAATTTTTATCAG-GTGCTAGATAAATT
7742158 GGGC
65 GGGC
* * * *
7742162 TTTAAAATCTTCATTAGGTG-CCAGATAAATTGGG-TTAAAAATTTTCATCAAGG-G-TCAAATA
1 -TTAAAATTTTCATTAGG-GACCAGATAAACTGGGCTT-AAAATTTTTATC-AGGTGCT-AGATA
*
7742223 AATTAGGC
61 AATTGGGC
* * * * * *
7742231 TT-AAATTTTCATT-GAGAGCTA-ACTAAACTGGGCTTTAAAATCTTCATCAAGTGCTAGGTAAA
1 TTAAAATTTTCATTAGGGA-CCAGA-TAAACTGGGC-TTAAAATTTTTATCAGGTGCTAGATAAA
* *
7742293 CTGGGT
63 TTGGGC
* * * * * *
7742299 TTAAAATCTTT-ATCAGGTG-CCAGATAAATTGGGTTTAAAATTTTCATCAGGGGCTGGATAAAT
1 TTAAAAT-TTTCATTAGG-GACCAGATAAACTGGGCTTAAAATTTTTATCAGGTGCTAGATAAAT
*
7742362 TAGG-
64 TGGGC
* * * * ** * * *
7742366 TTTAAATTTTCACTA-AGAGCCAGCTAAGTTGGGCTTTAAAATCTTCT-TCAGGTACTAGGTAAA
1 TTAAAATTTTCATTAGGGA-CCAGATAAACTGGGC-TTAAAAT-TTTTATCAGGTGCTAGATAAA
* *
7742429 CTAGGC
63 TTGGGC
* * *
7742435 TTAAAATCTTTCTTTAGTG-CCA-AGTAAACTAGGCTTAA
1 TTAAAAT-TTTCATTAGGGACCAGA-TAAACTGGGCTTAA
7742473 CTTTTTGTAT
Statistics
Matches: 331, Mismatches: 80, Indels: 68
0.69 0.17 0.14
Matches are distributed among these distances:
65 2 0.01
66 12 0.04
67 114 0.34
68 132 0.40
69 55 0.17
70 13 0.04
71 3 0.01
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (68 bp):
TTAAAATTTTCATTAGGGACCAGATAAACTGGGCTTAAAATTTTTATCAGGTGCTAGATAAATTG
GGC
Found at i:7742132 original size:203 final size:204
Alignment explanation
Indices: 7741915--7742311 Score: 468
Period size: 203 Copynumber: 2.0 Consensus size: 204
7741905 TAAAGGTTAG
* * *
7741915 ATAAACTAGGCTTAAATTTTCATTGGGAGCCAACTAAACTAAGCTTTAAAATTTTCATTAAGTGT
1 ATAAACTAGGCTTAAATTTTCACTGAGAGCCAACTAAACTAAGCTTTAAAATCTTCATTAAGTG-
* ** *
7741980 CAAG-TAAACTGGGTTTAAAATTTT--TCTTTGGTGT-AAGATAAATTGGGCTTAAAATTTCATT
65 CAAGATAAACTGGGTTAAAAATTTTCATC-AAGG-GTCAA-ATAAATTAGGCTTAAAATTTCATT
* *
7742041 -AGAGGCCAGA-TAAACTGGGC-TCAAAATCTTTATC-AGTTGCTAGGTAAATTGGGCTTAAAAT
127 GAGA-GCCA-ACTAAACTGGGCTTCAAAATCTTCATCAAG-TGCTAGGTAAACTGGGCTTAAAAT
*
7742102 TTTTATTAGGGACCAT
189 CTTTATTAGGGACCAT
* * * * ** *
7742118 ATAAACTCGGCTTAAATTTTTACTGAGAGCCAGCTAAGCTGGGCTTTAAAATCTTCATTAGGTGC
1 ATAAACTAGGCTTAAATTTTCACTGAGAGCCAACTAAACTAAGCTTTAAAATCTTCATTAAGTGC
* * *
7742183 CAGATAAATTGGGTTAAAAATTTTCATCAAGGGTCAAATAAATTAGGCTTAAATTTTCATTGAGA
66 AAGATAAACTGGGTTAAAAATTTTCATCAAGGGTCAAATAAATTAGGCTTAAAATTTCATTGAGA
* * *
7742248 GCTAACTAAACTGGGCTTTAAAATCTTCATCAAGTGCTAGGTAAACTGGGTTTAAAATCTTTAT
131 GCCAACTAAACTGGGCTTCAAAATCTTCATCAAGTGCTAGGTAAACTGGGCTTAAAATCTTTAT
7742312 CAGGTGCCAG
Statistics
Matches: 163, Mismatches: 23, Indels: 15
0.81 0.11 0.07
Matches are distributed among these distances:
202 4 0.02
203 109 0.67
204 46 0.28
205 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (204 bp):
ATAAACTAGGCTTAAATTTTCACTGAGAGCCAACTAAACTAAGCTTTAAAATCTTCATTAAGTGC
AAGATAAACTGGGTTAAAAATTTTCATCAAGGGTCAAATAAATTAGGCTTAAAATTTCATTGAGA
GCCAACTAAACTGGGCTTCAAAATCTTCATCAAGTGCTAGGTAAACTGGGCTTAAAATCTTTATT
AGGGACCAT
Found at i:7742348 original size:34 final size:34
Alignment explanation
Indices: 7741959--7742418 Score: 194
Period size: 34 Copynumber: 13.6 Consensus size: 34
7741949 TAAACTAAGC
* * * *
7741959 TTTAAAATTTTCATTAAGTGTCA-AGTAAACTGGG
1 TTTAAAATTTTCATCAGGTGCCAGA-TAAATTGGG
** **
7741993 TTTAAAATTTTTC-TTTGGTGTAAGATAAATTGGG
1 TTTAAAA-TTTTCATCAGGTGCCAGATAAATTGGG
* * *
7742027 CTTAAAA-TTTCATTAGAG-GCCAGATAAACTGGG
1 TTTAAAATTTTCATCAG-GTGCCAGATAAATTGGG
* * * * *
7742060 CTCAAAATCTTT-ATCAGTTGCTAGGTAAATTGGG
1 TTTAAAAT-TTTCATCAGGTGCCAGATAAATTGGG
* * * * * *
7742094 CTTAAAATTTTTATTAGG-GACCATATAAACTCGG
1 TTTAAAATTTTCATCAGGTG-CCAGATAAATTGGG
* * * * * **
7742128 CTT-AAATTTTTA-CTGAGAGCCAGCTAAGCTGGG
1 TTTAAAATTTTCATCAG-GTGCCAGATAAATTGGG
* *
7742161 CTTTAAAATCTTCATTAGGTGCCAGATAAATTGGG
1 -TTTAAAATTTTCATCAGGTGCCAGATAAATTGGG
* * * *
7742196 TTAAAAATTTTCATCAAGG-GTCAAATAAATTAGG
1 TTTAAAATTTTCATC-AGGTGCCAGATAAATTGGG
* * * * *
7742230 CTT-AAATTTTCAT-TGAGAGCTA-ACTAAACTGGG
1 TTTAAAATTTTCATCAG-GTGCCAGA-TAAATTGGG
* * * * *
7742263 CTTTAAAATCTTCATCAAGTGCTAGGTAAACTGGG
1 -TTTAAAATTTTCATCAGGTGCCAGATAAATTGGG
7742298 TTTAAAATCTTT-ATCAGGTGCCAGATAAATTGGG
1 TTTAAAAT-TTTCATCAGGTGCCAGATAAATTGGG
* ** *
7742332 TTTAAAATTTTCATCAGGGGCTGGATAAATTAGG
1 TTTAAAATTTTCATCAGGTGCCAGATAAATTGGG
* * * *
7742366 TTT-AAATTTTCA-CTAAGAGCCAGCTAAGTTGGG
1 TTTAAAATTTTCATC-AGGTGCCAGATAAATTGGG
* *
7742399 CTTTAAAATCTTCTTCAGGT
1 -TTTAAAATTTTCATCAGGT
7742419 ACTAGGTAAA
Statistics
Matches: 321, Mismatches: 77, Indels: 55
0.71 0.17 0.12
Matches are distributed among these distances:
31 1 0.00
32 8 0.02
33 88 0.27
34 156 0.49
35 66 0.21
36 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (34 bp):
TTTAAAATTTTCATCAGGTGCCAGATAAATTGGG
Found at i:7742385 original size:136 final size:136
Alignment explanation
Indices: 7742156--7742445 Score: 393
Period size: 136 Copynumber: 2.1 Consensus size: 136
7742146 GCCAGCTAAG
* *
7742156 CTGGGCTTTAAAATCTTCATTAGGTGCCAGATAAATTGGGTTAAAAATTTTCATCAAGGGTCAAA
1 CTGGG-TTTAAAATCTTTATCAGGTGCCAGATAAATTGGGTTAAAAATTTTCATCAAGGGTCAAA
* * * *
7742221 TAAATTAGGCTTAAATTTTCATTGAGAGCTAACTAAACTGGGCTTTAAAATCTTCATCAAGTGCT
65 TAAATTAGGCTTAAATTTTCACTAAGAGCCAACTAAACTGGGCTTTAAAATCTTCATCAAGTACT
7742286 AGGTAAA
130 AGGTAAA
* * **
7742293 CTGGGTTTAAAATCTTTATCAGGTGCCAGATAAATTGGGTTTAAAATTTTCATC-AGGGGCTGGA
1 CTGGGTTTAAAATCTTTATCAGGTGCCAGATAAATTGGGTTAAAAATTTTCATCAAGGGTC-AAA
* * ** * *
7742357 TAAATTAGGTTTAAATTTTCACTAAGAGCCAGCTAAGTTGGGCTTTAAAATCTTCTTCAGGTACT
65 TAAATTAGGCTTAAATTTTCACTAAGAGCCAACTAAACTGGGCTTTAAAATCTTCATCAAGTACT
7742422 AGGTAAA
130 AGGTAAA
* *
7742429 CTAGGCTTAAAATCTTT
1 CTGGGTTTAAAATCTTT
7742446 CTTTAGTGCC
Statistics
Matches: 134, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
135 5 0.04
136 124 0.93
137 5 0.04
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (136 bp):
CTGGGTTTAAAATCTTTATCAGGTGCCAGATAAATTGGGTTAAAAATTTTCATCAAGGGTCAAAT
AAATTAGGCTTAAATTTTCACTAAGAGCCAACTAAACTGGGCTTTAAAATCTTCATCAAGTACTA
GGTAAA
Found at i:7742441 original size:34 final size:34
Alignment explanation
Indices: 7742401--7742472 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
7742391 AAGTTGGGCT
* *
7742401 TTAAAATC-TTCTTCAGGTACTAGGTAAACTAGGC
1 TTAAAATCTTTCTTCA-GTACCAAGTAAACTAGGC
* *
7742435 TTAAAATCTTTCTTTAGTGCCAAGTAAACTAGGC
1 TTAAAATCTTTCTTCAGTACCAAGTAAACTAGGC
7742469 TTAA
1 TTAA
7742473 CTTTTTGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 27 0.82
35 6 0.18
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (34 bp):
TTAAAATCTTTCTTCAGTACCAAGTAAACTAGGC
Found at i:7742689 original size:21 final size:22
Alignment explanation
Indices: 7742643--7742721 Score: 92
Period size: 22 Copynumber: 3.6 Consensus size: 22
7742633 TTTTTTTTAA
* *
7742643 CTAATTTGAGCTTATGTGCCAA
1 CTAATCTGAGCTTATGTGCCAG
*
7742665 CTAATCTGAGCTTGT-TGCCAG
1 CTAATCTGAGCTTATGTGCCAG
7742686 CTAAAT-TG-GACTTATGTGCCAG
1 CT-AATCTGAG-CTTATGTGCCAG
7742708 CTAATCTGAGCTTA
1 CTAATCTGAGCTTA
7742722 AGACTTGATT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
20 1 0.02
21 16 0.33
22 30 0.62
23 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (22 bp):
CTAATCTGAGCTTATGTGCCAG
Found at i:7742792 original size:32 final size:31
Alignment explanation
Indices: 7742756--7742832 Score: 73
Period size: 31 Copynumber: 2.5 Consensus size: 31
7742746 TAGGCTTATG
*
7742756 GCCAGCTAAACTAGGTTTAAATATTCACCAAT
1 GCCAGCTAAACTAGGCTTAAAT-TTCACCAAT
* * * * **
7742788 GCCAGATAAGCTGGGCTTAACTTTCATTAAT
1 GCCAGCTAAACTAGGCTTAAATTTCACCAAT
*
7742819 GCCAACTAAACTAG
1 GCCAGCTAAACTAG
7742833 ATTTCATGCT
Statistics
Matches: 34, Mismatches: 11, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
31 17 0.50
32 17 0.50
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (31 bp):
GCCAGCTAAACTAGGCTTAAATTTCACCAAT
Found at i:7751932 original size:19 final size:19
Alignment explanation
Indices: 7751894--7751937 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7751884 ATCAAAAAAA
* *
7751894 TTTTTTAACATTTATTTAT
1 TTTTTTAAAATTTATATAT
*
7751913 TTTTTTAAAATTTCTATAT
1 TTTTTTAAAATTTATATAT
7751932 TATTTT
1 T-TTTT
7751938 CAATCTATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTTAAAATTTATATAT
Found at i:7755966 original size:61 final size:62
Alignment explanation
Indices: 7755909--7756116 Score: 196
Period size: 63 Copynumber: 3.4 Consensus size: 62
7755899 CCAAAAATGC
*
7755909 TTTAAATAATCCTTTTTAAAATTTATCAAAAG-ATTATTTAAGG-ATTTTTATCTAAAAATG
1 TTTAAATAATCCTTTTTAAAATTTATCAAAAGAATTATTTAAGGCATTTTTATCTAAAAACG
* ** * * *
7755969 TTGTAAATAATGCTTTTTAAAAAATAT-AAAAGAATTATTTAAGGCATTTTTGGTCCAAAAACAC
1 TT-TAAATAATCCTTTTTAAAATTTATCAAAAGAATTATTTAAGGCATTTTT-ATCTAAAAAC-G
* * ** * **
7756033 ATTAAATAGTCCCCTTTAAAATTTATC-AATGAATTATTTAAGGTGTTTTTAGTCT-AAAACG
1 TTTAAATAATCCTTTTTAAAATTTATCAAAAGAATTATTTAAGGCATTTTTA-TCTAAAAACG
7756094 TCTTAAATAAT-C-TTTTAAAATTT
1 T-TTAAATAATCCTTTTTAAAATTT
7756117 TTTGAAGGGC
Statistics
Matches: 117, Mismatches: 23, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
60 17 0.15
61 33 0.28
62 19 0.16
63 47 0.40
64 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (62 bp):
TTTAAATAATCCTTTTTAAAATTTATCAAAAGAATTATTTAAGGCATTTTTATCTAAAAACG
Found at i:7756370 original size:190 final size:188
Alignment explanation
Indices: 7756158--7756506 Score: 477
Period size: 190 Copynumber: 1.8 Consensus size: 188
7756148 AAAAAATATC
* * ** ** * *
7756158 TTAAATAATATCTTTTAATTTTTTGTACTGTATTATTTAAAACTTTTTTTTTACT-AAAAACACT
1 TTAAATAATACCTTTTAATTTTTTGGACCATATTATTT--AACTCATTTTTTACTAAAAAAAAAT
* * *
7756222 -TTAAATAATCCCTTTCATTATTTATAATATTTAAGAGATAAAATATAAAACAACCAGAGTAGTT
64 CTTAAATAATCCCTTTCATTATTTATAAGATTTAAGAGATAAAATATAAAA-AA-CAGAATAGCT
*
7756286 TAATTAGTCAGAGTATATGGTTATTAACCATAAAGTCGTAGGTTTGATCTTTTTTCTAGCAT
127 TAATTAGTCAGAGAATATGGTTATTAACCATAAAGTCGTAGGTTTGATCTTTTTTCTAGCAT
*
7756348 TTAAATAATACCTTTTAATTTTTTGGACCATATTATTTAAGTCATTTTTTACTAAAAAAAAATCT
1 TTAAATAATACCTTTTAATTTTTTGGACCATATTATTTAACTCATTTTTTACTAAAAAAAAATCT
* * * *
7756413 TAAATAATCTCTTTCATTATTTATAAGATTTAAGATATAAAATATAAAAAATAGAATAGCTTAGT
66 TAAATAATCCCTTTCATTATTTATAAGATTTAAGAGATAAAATATAAAAAACAGAATAGCTTAAT
* *
7756478 TAGTTAGAGAATATGGTTATTAATCATAA
131 TAGTCAGAGAATATGGTTATTAACCATAA
7756507 GGTCATAAAT
Statistics
Matches: 138, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
188 48 0.35
189 9 0.07
190 81 0.59
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (188 bp):
TTAAATAATACCTTTTAATTTTTTGGACCATATTATTTAACTCATTTTTTACTAAAAAAAAATCT
TAAATAATCCCTTTCATTATTTATAAGATTTAAGAGATAAAATATAAAAAACAGAATAGCTTAAT
TAGTCAGAGAATATGGTTATTAACCATAAAGTCGTAGGTTTGATCTTTTTTCTAGCAT
Found at i:7759727 original size:30 final size:29
Alignment explanation
Indices: 7759656--7759750 Score: 93
Period size: 31 Copynumber: 3.1 Consensus size: 29
7759646 ATATTTTTAC
* * *
7759656 TATATTTAGATAAATTTTTAAATTTTAATT
1 TATATTAAAATAAA-TTTTAATTTTTAATT
* *
7759686 TGTATCCAAAATAAATCTTTAATTTTTAATT
1 TATAT-TAAAATAAAT-TTTAATTTTTAATT
7759717 TATATTAAAATAAAATTTTAATCTTTT-ATT
1 TATATTAAAAT-AAATTTTAAT-TTTTAATT
7759747 TATA
1 TATA
7759751 CCTAAATATA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
30 23 0.43
31 31 0.57
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (29 bp):
TATATTAAAATAAATTTTAATTTTTAATT
Found at i:7759744 original size:31 final size:31
Alignment explanation
Indices: 7759628--7759750 Score: 103
Period size: 30 Copynumber: 4.1 Consensus size: 31
7759618 TTTGTCACTT
* * * *
7759628 TATTTAAATAAAATTTTTATATTTTTA-CTA
1 TATTAAAATAAAATTTTAATATTTTAATTTA
* * * *
7759658 TATTTAGATAAATTTTTAA-ATTTTAATTTG
1 TATTAAAATAAAATTTTAATATTTTAATTTA
*
7759688 TATCCAAAAT-AAATCTTTAAT-TTTTAATTTA
1 TAT-TAAAATAAAAT-TTTAATATTTTAATTTA
*
7759719 TATTAAAATAAAATTTTAATCTTTT-ATTTA
1 TATTAAAATAAAATTTTAATATTTTAATTTA
7759749 TA
1 TA
7759751 CCTAAATATA
Statistics
Matches: 75, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
29 6 0.08
30 41 0.55
31 28 0.37
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (31 bp):
TATTAAAATAAAATTTTAATATTTTAATTTA
Found at i:7770405 original size:79 final size:79
Alignment explanation
Indices: 7770311--7770468 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
7770301 ATTAAACAGT
7770311 AACTTAAATAAACAATGTCTTCAATCTATCCCATAGTCCATAACATATATTTAAAATAGCAAAAT
1 AACTTAAATAAACAATGTCTTCAATCTATCCCATAGTCCATAACATATATTTAAAATAGCAAAAT
7770376 AATTTATAAATATC
66 AATTTATAAATATC
7770390 AACTTAAATAAACAATGTCTTCAATCTATCCCATAGTCCATAACATATATTTAAAATAGCAAAAT
1 AACTTAAATAAACAATGTCTTCAATCTATCCCATAGTCCATAACATATATTTAAAATAGCAAAAT
7770455 AATTTATAAATATC
66 AATTTATAAATATC
7770469 CAAGTTAACA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (79 bp):
AACTTAAATAAACAATGTCTTCAATCTATCCCATAGTCCATAACATATATTTAAAATAGCAAAAT
AATTTATAAATATC
Found at i:7770630 original size:25 final size:25
Alignment explanation
Indices: 7770565--7770616 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
7770555 TCAATGTATT
7770565 TAAAATAAATAAATAAAAATAAGAA
1 TAAAATAAATAAATAAAAATAAGAA
7770590 TAAAATAAATAAATAAAAATAAGAA
1 TAAAATAAATAAATAAAAATAAGAA
7770615 TA
1 TA
7770617 TGAATGTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (25 bp):
TAAAATAAATAAATAAAAATAAGAA
Found at i:7771470 original size:22 final size:23
Alignment explanation
Indices: 7771427--7771479 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
7771417 TATGATGATC
* **
7771427 ATATTATTTTTTATCATTATAA-
1 ATATTATTTATTATCAGCATAAT
*
7771449 ATATTATTTATTATTAGCATAAT
1 ATATTATTTATTATCAGCATAAT
*
7771472 CTATTATT
1 ATATTATT
7771480 GTATGTTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.57
Consensus pattern (23 bp):
ATATTATTTATTATCAGCATAAT
Found at i:7773364 original size:22 final size:22
Alignment explanation
Indices: 7773321--7773377 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7773311 TTTTTTCAAG
*
7773321 TTAATTTAA-TTTTCTACAAAT
1 TTAATTTAAGTTTTCAACAAAT
7773342 TTAATTTAAGTTTTCAAGC-AAT
1 TTAATTTAAGTTTTCAA-CAAAT
* *
7773364 TTAAATTATGTTTT
1 TTAATTTAAGTTTT
7773378 GATTTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 9 0.29
22 21 0.68
23 1 0.03
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (22 bp):
TTAATTTAAGTTTTCAACAAAT
Found at i:7773715 original size:6 final size:6
Alignment explanation
Indices: 7773704--7773732 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7773694 GAGTGAAGTT
7773704 TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
7773733 GTTAATTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:7782309 original size:2 final size:2
Alignment explanation
Indices: 7782297--7782330 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
7782287 GAGTCAAGCG
*
7782297 CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7782331 AAAAAAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:7784257 original size:13 final size:14
Alignment explanation
Indices: 7784224--7784270 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
7784214 TTTATTAAAC
**
7784224 AAGAAAAAAAAGAA
1 AAGAAAAAAAAGCG
7784238 AAGAAAAAAAAGCG
1 AAGAAAAAAAAGCG
7784252 AA-AAAAAAAAGCG
1 AAGAAAAAAAAGCG
*
7784265 GAGAAA
1 AAGAAA
7784271 CAGAAATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 12 0.41
14 17 0.59
ACGTcount: A:0.77, C:0.04, G:0.19, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAAAGCG
Found at i:7785401 original size:27 final size:28
Alignment explanation
Indices: 7785351--7785411 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
7785341 AAAATAAAAA
*
7785351 TTAATATATCTAATTTTATTATTTACTT
1 TTAATATATCTAATTTTATCATTTACTT
* *
7785379 TTAATATAT-TAGTTTTATCATTTTCTT
1 TTAATATATCTAATTTTATCATTTACTT
7785406 TTAATA
1 TTAATA
7785412 AACAAATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 21 0.70
28 9 0.30
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.61
Consensus pattern (28 bp):
TTAATATATCTAATTTTATCATTTACTT
Found at i:7785538 original size:6 final size:6
Alignment explanation
Indices: 7785527--7785580 Score: 69
Period size: 6 Copynumber: 9.5 Consensus size: 6
7785517 AAGATGATTA
*
7785527 TTTATT TTTATT TTTATT TTTATT TTTA-T TTT-TT TATATT TTTA-T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
7785572 GTTATT TTT
1 TTTATT TTT
7785581 TGGTATTAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 11 0.27
6 30 0.73
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:7785544 original size:12 final size:12
Alignment explanation
Indices: 7785527--7785580 Score: 69
Period size: 11 Copynumber: 4.8 Consensus size: 12
7785517 AAGATGATTA
7785527 TTTATTTTTATT
1 TTTATTTTTATT
7785539 TTTATTTTTATT
1 TTTATTTTTATT
7785551 TTTA-TTTT-TT
1 TTTATTTTTATT
*
7785561 TATATTTTTA-T
1 TTTATTTTTATT
*
7785572 GTTATTTTT
1 TTTATTTTT
7785581 TGGTATTAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
10 5 0.14
11 16 0.43
12 16 0.43
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (12 bp):
TTTATTTTTATT
Found at i:7785566 original size:28 final size:27
Alignment explanation
Indices: 7785524--7785580 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
7785514 TTAAAGATGA
*
7785524 TTATTTATTTTTATTTTTATTTTTATTT
1 TTATTTATTTTTATTTTTA-TGTTATTT
7785552 TTATTT-TTTTATATTTTTATGTTATTT
1 TTATTTATTTT-TATTTTTATGTTATTT
7785579 TT
1 TT
7785581 TGGTATTAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 13 0.48
28 14 0.52
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.81
Consensus pattern (27 bp):
TTATTTATTTTTATTTTTATGTTATTT
Found at i:7785581 original size:21 final size:21
Alignment explanation
Indices: 7785537--7785581 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
7785527 TTTATTTTTA
*
7785537 TTTTTATTTTTATTTTTATTT
1 TTTTTATTTTTATTGTTATTT
7785558 TTTTATATTTTTA-TGTTATTT
1 TTTT-TATTTTTATTGTTATTT
7785579 TTT
1 TTT
7785582 GGTATTAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (21 bp):
TTTTTATTTTTATTGTTATTT
Found at i:7785587 original size:21 final size:22
Alignment explanation
Indices: 7785541--7785587 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
7785531 TTTTTATTTT
* *
7785541 TATTTTTATTTTTATTTTTTTA
1 TATTTTTATTGTTATTTTTTGA
*
7785563 TATTTTTA-TGTTATTTTTTGG
1 TATTTTTATTGTTATTTTTTGA
7785584 TATT
1 TATT
7785588 AGAAAGTGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (22 bp):
TATTTTTATTGTTATTTTTTGA
Found at i:7787743 original size:24 final size:24
Alignment explanation
Indices: 7787711--7787759 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
7787701 TGGAAACACT
*
7787711 TAATTCGAACTATTTATACATATG
1 TAATTCGAACTATTTATACAAATG
7787735 TAATTCGAACTATTTATACAAATG
1 TAATTCGAACTATTTATACAAATG
7787759 T
1 T
7787760 GATGGAGAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (24 bp):
TAATTCGAACTATTTATACAAATG
Found at i:7789950 original size:79 final size:81
Alignment explanation
Indices: 7789859--7790019 Score: 290
Period size: 82 Copynumber: 2.0 Consensus size: 81
7789849 AAACCAAAAA
*
7789859 CAAAACCCTTAAAATCCCCTCTTTTATG-TTTTTTTTTT-CTAAACTTTTTGGTGAATTTTATTG
1 CAAAACCCTTAAAATCCCCTCTTTTATGTTTTTTTTTTTACTAAACTTTTTGGTGAATTCTATTG
7789922 TTAATGACGCTTGATT
66 TTAATGACGCTTGATT
7789938 CAAAACCCTTAAAATCCCCTCTTTTATGTTTTTTTTTTTAACTAAACTTTTTGGTGAATTCTATT
1 CAAAACCCTTAAAATCCCCTCTTTTATGTTTTTTTTTTT-ACTAAACTTTTTGGTGAATTCTATT
7790003 GTTAATGACGCTTGATT
65 GTTAATGACGCTTGATT
7790020 GCTGAAAATT
Statistics
Matches: 78, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
79 28 0.36
80 10 0.13
82 40 0.51
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (81 bp):
CAAAACCCTTAAAATCCCCTCTTTTATGTTTTTTTTTTTACTAAACTTTTTGGTGAATTCTATTG
TTAATGACGCTTGATT
Found at i:7793121 original size:12 final size:13
Alignment explanation
Indices: 7793104--7793136 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7793094 TAATTATAAT
7793104 TTGATTATGAT-A
1 TTGATTATGATGA
7793116 TTGATTATGATGA
1 TTGATTATGATGA
*
7793129 TTAATTAT
1 TTGATTAT
7793137 TTAATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
TTGATTATGATGA
Found at i:7794508 original size:2 final size:2
Alignment explanation
Indices: 7794497--7794530 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
7794487 AATACGATTT
*
7794497 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7794531 GAGGGTGAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:7794991 original size:28 final size:29
Alignment explanation
Indices: 7794950--7795010 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
7794940 TTTTATTTCA
*
7794950 AAAATAAATATAAA-AAAATACTTAAAATT
1 AAAATAAATATAAATAAAATA-TAAAAATT
*
7794979 AAAAT-AATATAAATCAAATATAAAAATT
1 AAAATAAATATAAATAAAATATAAAAATT
7795007 AAAA
1 AAAA
7795011 ATTTTAGAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 19 0.66
29 10 0.34
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.26
Consensus pattern (29 bp):
AAAATAAATATAAATAAAATATAAAAATT
Found at i:7798199 original size:16 final size:16
Alignment explanation
Indices: 7798173--7798205 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7798163 CACAATAATC
7798173 ACATAAATTTCACAAAA
1 ACATAAATTTC-CAAAA
7798190 ACAT-AATTTCCAAAA
1 ACATAAATTTCCAAAA
7798205 A
1 A
7798206 ATACCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 6 0.38
17 4 0.25
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (16 bp):
ACATAAATTTCCAAAA
Found at i:7798206 original size:16 final size:17
Alignment explanation
Indices: 7798154--7798205 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 17
7798144 AAATTCAACG
7798154 ATAAATTTACACAATAATCAC
1 ATAAATTT-CACAA-AA--AC
7798175 ATAAATTTCACAAAAAC
1 ATAAATTTCACAAAAAC
7798192 AT-AATTTC-CAAAAA
1 ATAAATTTCACAAAAA
7798206 ATACCTTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
15 6 0.19
16 6 0.19
17 4 0.13
19 2 0.06
20 5 0.16
21 8 0.26
ACGTcount: A:0.56, C:0.17, G:0.00, T:0.27
Consensus pattern (17 bp):
ATAAATTTCACAAAAAC
Found at i:7800399 original size:21 final size:22
Alignment explanation
Indices: 7800375--7800419 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
7800365 CTTTATTTTT
* *
7800375 TTAAAATTTTCT-TTAAATTTA
1 TTAAAATTTTATGTTAAAATTA
7800396 TT-AAATTTTATGTTAAAATTA
1 TTAAAATTTTATGTTAAAATTA
7800417 TTA
1 TTA
7800420 TTAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
TTAAAATTTTATGTTAAAATTA
Found at i:7800700 original size:30 final size:31
Alignment explanation
Indices: 7800639--7800708 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 31
7800629 AAATGGTTTA
* * *
7800639 GAAGCGGTTCAGGTAAATTTTTTTGCAATAT
1 GAAGCGGTTCAAGCAAATTTTTTTACAATAT
*
7800670 GAAGCGGTTCAAGCAAA-TTTTTTACGATAT
1 GAAGCGGTTCAAGCAAATTTTTTTACAATAT
7800700 GAAGCGGTT
1 GAAGCGGTT
7800709 TGACCGGTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
30 20 0.57
31 15 0.43
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.34
Consensus pattern (31 bp):
GAAGCGGTTCAAGCAAATTTTTTTACAATAT
Found at i:7802012 original size:43 final size:42
Alignment explanation
Indices: 7801954--7802145 Score: 159
Period size: 43 Copynumber: 4.5 Consensus size: 42
7801944 TAAATGTTTG
* * * * * **
7801954 ACAACTTGTAAAAATTTAAAAGGAATCTTTAAGCAGAGGCTCA
1 ACAACTTTTGAAAATTTAAAAGG-CTCTTTAAGTAAAAACTCA
* * *
7801997 ACAACTTTTGAAAATTTAAAAGGTTCCTTAAGTAAAAACTCG
1 ACAACTTTTGAAAATTTAAAAGGCTCTTTAAGTAAAAACTCA
* ** *
7802039 ACAACTTTTAAAAATTTAAAAGGCTCTTCTAAGTAAAAGTTTA
1 ACAACTTTTGAAAATTTAAAAGGCTCTT-TAAGTAAAAACTCA
** * * * * *
7802082 GTAACTTTTGAAATTTTAAATGGCTCTTTGAAGTAGAGACTTA
1 ACAACTTTTGAAAATTTAAAAGGCTCTTT-AAGTAAAAACTCA
*
7802125 ACAACTTTTGAAAACTTAAAA
1 ACAACTTTTGAAAATTTAAAA
7802146 TATTCTGCTT
Statistics
Matches: 117, Mismatches: 30, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
42 38 0.32
43 79 0.68
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.32
Consensus pattern (42 bp):
ACAACTTTTGAAAATTTAAAAGGCTCTTTAAGTAAAAACTCA
Found at i:7803113 original size:10 final size:10
Alignment explanation
Indices: 7803098--7803128 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
7803088 TATATCTATA
*
7803098 TTTTTTCTCT
1 TTTTTTTTCT
7803108 TTTTTTTTCT
1 TTTTTTTTCT
7803118 TTTTTTTTCT
1 TTTTTTTTCT
7803128 T
1 T
7803129 ATTCTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:7803115 original size:12 final size:13
Alignment explanation
Indices: 7803098--7803150 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 13
7803088 TATATCTATA
7803098 TTTTTTCTC-TT-
1 TTTTTTCTCTTTC
7803109 TTTTTT-TCTTT-
1 TTTTTTCTCTTTC
7803120 TTTTTTCT-TATTC
1 TTTTTTCTCT-TTC
7803133 TTTTTTC-CTTTC
1 TTTTTTCTCTTTC
7803145 TTTTTT
1 TTTTTT
7803151 TTAAGCAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
10 2 0.05
11 15 0.41
12 12 0.32
13 8 0.22
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTCTCTTTC
Found at i:7806567 original size:27 final size:27
Alignment explanation
Indices: 7806535--7806598 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
7806525 AAAAAATCAC
7806535 TTTTATTTTTTAAAAAAATGAAAAAAA
1 TTTTATTTTTTAAAAAAATGAAAAAAA
* * **
7806562 TTTTATTTATTATAAAAATGTTAAAAA
1 TTTTATTTTTTAAAAAAATGAAAAAAA
*
7806589 TTAT-TTTTTT
1 TTTTATTTTTT
7806599 GGTTAAAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (27 bp):
TTTTATTTTTTAAAAAAATGAAAAAAA
Found at i:7807792 original size:11 final size:10
Alignment explanation
Indices: 7807776--7807972 Score: 103
Period size: 9 Copynumber: 20.4 Consensus size: 10
7807766 TAAGGAATTC
7807776 AAAAAATTCTT
1 AAAAAATT-TT
7807787 AAAAAA-TTT
1 AAAAAATTTT
**
7807796 AAAAAA-TAA
1 AAAAAATTTT
*
7807805 AAAACAATTCT
1 AAAA-AATTTT
*
7807816 AAAAAATATT
1 AAAAAATTTT
*
7807826 -ATAAATTTT
1 AAAAAATTTT
7807835 AAAAAA-TTT
1 AAAAAATTTT
*
7807844 -AAAAACTTT
1 AAAAAATTTT
7807853 AAAAAA-TTT
1 AAAAAATTTT
* *
7807862 AAAACAAATCT
1 AAAA-AATTTT
7807873 --AAAATTTT
1 AAAAAATTTT
*
7807881 AAAAAAATTCT
1 -AAAAAATTTT
*
7807892 -AAATATTTT
1 AAAAAATTTT
*
7807901 AAAAGA-TTT
1 AAAAAATTTT
7807910 -AAAAATTTT
1 AAAAAATTTT
* *
7807919 -AAAAACTTC
1 AAAAAATTTT
7807928 AAAAAATTTT
1 AAAAAATTTT
* **
7807938 AAAAACTTCA
1 AAAAAATTTT
* *
7807948 AAAAAAATTC
1 AAAAAATTTT
7807958 AAAATAATTTT
1 AAAA-AATTTT
7807969 AAAA
1 AAAA
7807973 TTTTTTTAAA
Statistics
Matches: 142, Mismatches: 30, Indels: 28
0.71 0.15 0.14
Matches are distributed among these distances:
8 13 0.09
9 55 0.39
10 46 0.32
11 28 0.20
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.32
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:7807799 original size:19 final size:18
Alignment explanation
Indices: 7807777--7807942 Score: 118
Period size: 19 Copynumber: 8.8 Consensus size: 18
7807767 AAGGAATTCA
7807777 AAAAATTCTTAAAAAATTT
1 AAAAATT-TTAAAAAATTT
* **
7807796 AAAAAATAAAAAACAATTCT
1 AAAAATTTTAAAA-AATT-T
* * *
7807816 AAAAAATATTATAAATTTT
1 -AAAAATTTTAAAAAATTT
* *
7807835 AAAAAATTTAAAAACTTT
1 AAAAATTTTAAAAAATTT
* *
7807853 AAAAAATTTAAAACAAATCT
1 -AAAAATTTTAAA-AAATTT
7807873 -AAAATTTTAAAAAAATTCT
1 AAAAATTTT-AAAAAATT-T
* *
7807892 AAATATTTTAAAAGATTT
1 AAAAATTTTAAAAAATTT
* *
7807910 AAAAATTTTAAAAACTTCA
1 AAAAATTTTAAAAAATT-T
7807929 AAAAATTTTAAAAA
1 AAAAATTTTAAAAA
7807943 CTTCAAAAAA
Statistics
Matches: 113, Mismatches: 25, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
18 44 0.39
19 46 0.41
20 15 0.13
21 8 0.07
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.33
Consensus pattern (18 bp):
AAAAATTTTAAAAAATTT
Found at i:7807800 original size:49 final size:48
Alignment explanation
Indices: 7807747--7807886 Score: 137
Period size: 49 Copynumber: 2.9 Consensus size: 48
7807737 TGTTATCATA
**
7807747 AAAAATTAAAAAACAATTCTAAGGAAT-TCAAAAAATTCTTAAAAAATTT
1 AAAAATTAAAAAACAATTCTAAAAAATAT-AAAAAATT-TTAAAAAATTT
* * *
7807796 AAAAAATAAAAAACAATTCTAAAAAATATTATAAATTTTAAAAAATTT
1 AAAAATTAAAAAACAATTCTAAAAAATATAAAAAATTTTAAAAAATTT
* **
7807844 AAAAACTT-TAAAA-AATT-TAAAACAA-ATCTAAAATTTTAAAAAA
1 AAAAA-TTAAAAAACAATTCTAAAA-AATATAAAAAATTTTAAAAAA
7807887 ATTCTAAATA
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
46 20 0.26
47 6 0.08
48 20 0.26
49 31 0.40
50 1 0.01
ACGTcount: A:0.63, C:0.06, G:0.01, T:0.29
Consensus pattern (48 bp):
AAAAATTAAAAAACAATTCTAAAAAATATAAAAAATTTTAAAAAATTT
Found at i:7807889 original size:57 final size:55
Alignment explanation
Indices: 7807771--7807962 Score: 138
Period size: 57 Copynumber: 3.4 Consensus size: 55
7807761 AATTCTAAGG
** * *
7807771 AATTC-AAAAAATTCTTAAAAAATTTAAAAAATAAAAAACAATTCTAAAAAATATTATA
1 AATTCTAAAAAA-T-TT-AAAAATTTAAAAAATTTAAAACAAATCT-AAAAATATTAAA
* *
7807829 AATTTTAAAAAATTTAAAAACTTTAAAAAATTTAAAACAAATCT-AAAATTTTAAAAA
1 AATTCTAAAAAATTTAAAAA-TTTAAAAAATTTAAAACAAATCTAAAAATATT--AAA
* * * ** * *
7807886 AATTCTAAATATTTTAAAAGATTTAAAAATTTTAAAA-ACTTCAAAAAATTTTAAA
1 AATTCTAAAAAATTTAAAA-ATTTAAAAAATTTAAAACAAATCTAAAAATATTAAA
* * *
7807941 AACTTCAAAAAAAATTCAAAAT
1 AA-TTCTAAAAAATTTAAAAAT
7807963 AATTTTAAAA
Statistics
Matches: 109, Mismatches: 18, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
55 14 0.13
56 20 0.18
57 63 0.58
58 6 0.06
59 6 0.06
ACGTcount: A:0.60, C:0.07, G:0.01, T:0.32
Consensus pattern (55 bp):
AATTCTAAAAAATTTAAAAATTTAAAAAATTTAAAACAAATCTAAAAATATTAAA
Found at i:7807961 original size:9 final size:9
Alignment explanation
Indices: 7807771--7807952 Score: 123
Period size: 9 Copynumber: 19.2 Consensus size: 9
7807761 AATTCTAAGG
*
7807771 AATTCAAAA
1 AATTTAAAA
7807780 AATTCTTAAAA
1 AA-T-TTAAAA
7807791 AATTTAAAA
1 AATTTAAAA
**
7807800 AATAAAAAA
1 AATTTAAAA
7807809 CAATTCTAAAA
1 -AATT-TAAAA
*
7807820 AATATTATAA
1 AAT-TTAAAA
*
7807830 ATTTTAAAA
1 AATTTAAAA
7807839 AATTTAAAA
1 AATTTAAAA
*
7807848 ACTTTAAAA
1 AATTTAAAA
7807857 AATTTAAAACA
1 AATTT-AAA-A
*
7807868 AATCT-AAA
1 AATTTAAAA
*
7807876 ATTTTAAAAA
1 AATTT-AAAA
*
7807886 AATTCTAAAT
1 AATT-TAAAA
*
7807896 ATTTTAAAA
1 AATTTAAAA
*
7807905 GATTTAAAA
1 AATTTAAAA
*
7807914 ATTTTAAAA
1 AATTTAAAA
* *
7807923 ACTTCAAAA
1 AATTTAAAA
7807932 AATTTTAAAA
1 AA-TTTAAAA
* *
7807942 ACTTCAAAA
1 AATTTAAAA
7807951 AA
1 AA
7807953 AATTCAAAAT
Statistics
Matches: 133, Mismatches: 29, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
8 4 0.03
9 75 0.56
10 36 0.27
11 18 0.14
ACGTcount: A:0.60, C:0.07, G:0.01, T:0.32
Consensus pattern (9 bp):
AATTTAAAA
Found at i:7807961 original size:19 final size:19
Alignment explanation
Indices: 7807917--7807961 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
7807907 TTTAAAAATT
**
7807917 TTAAAAACTTCAAAAAATT
1 TTAAAAACTTCAAAAAAAA
7807936 TTAAAAACTTCAAAAAAAA
1 TTAAAAACTTCAAAAAAAA
7807955 TTCAAAA
1 TT-AAAA
7807962 TAATTTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.62, C:0.11, G:0.00, T:0.27
Consensus pattern (19 bp):
TTAAAAACTTCAAAAAAAA
Found at i:7808078 original size:26 final size:26
Alignment explanation
Indices: 7808042--7808154 Score: 77
Period size: 26 Copynumber: 4.2 Consensus size: 26
7808032 AATTTCAAAT
* *
7808042 AAATATACAAAAA-TAAAAAATTTTTA
1 AAATATTCAAAAATTAAAAAA-TATTA
*
7808068 AAATATTCAAAAATTTAAAAATATTA
1 AAATATTCAAAAATTAAAAAATATTA
* *
7808094 AAAAATTCTAAAAACTTTAAAAAT-TTCA
1 AAATATTC-AAAAA-TTAAAAAATATT-A
* * *
7808122 AAAAATTTGAAAAACTTCAAAAAAAATTA
1 AAATA-TTCAAAAA-TT-AAAAAATATTA
7808151 AAAT
1 AAAT
7808155 CTTAAAAGAA
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
26 23 0.32
27 13 0.18
28 23 0.32
29 11 0.15
30 2 0.03
ACGTcount: A:0.63, C:0.06, G:0.01, T:0.30
Consensus pattern (26 bp):
AAATATTCAAAAATTAAAAAATATTA
Found at i:7808088 original size:18 final size:17
Alignment explanation
Indices: 7808057--7808125 Score: 68
Period size: 18 Copynumber: 3.8 Consensus size: 17
7808047 TACAAAAATA
*
7808057 AAAAATTTTTAAAATATT
1 AAAAA-TTTAAAAATATT
7808075 CAAAAATTTAAAAATATT
1 -AAAAATTTAAAAATATT
7808093 AAAAAATTCTAAAAACT-TT
1 -AAAAATT-TAAAAA-TATT
7808112 AAAAATTTCAAAAA
1 AAAAATTT-AAAAA
7808126 ATTTGAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.02
18 30 0.67
19 13 0.29
20 1 0.02
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAAATTTAAAAATATT
Found at i:7808105 original size:19 final size:19
Alignment explanation
Indices: 7808055--7808153 Score: 87
Period size: 19 Copynumber: 5.3 Consensus size: 19
7808045 TATACAAAAA
* *
7808055 TAAAAAATTTTTAAAATAT
1 TAAAAAATTCTAAAAATAT
*
7808074 TCAAAAATT-TAAAAATAT
1 TAAAAAATTCTAAAAATAT
7808092 TAAAAAATTCTAAAAACT-T
1 TAAAAAATTCTAAAAA-TAT
* *
7808111 TAAAAATTTCAAAAAAT-T
1 TAAAAAATTCTAAAAATAT
* * *
7808129 TGAAAAACTTCAAAAAAAAT
1 T-AAAAAATTCTAAAAATAT
7808149 TAAAA
1 TAAAA
7808154 TCTTAAAAGA
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
18 19 0.28
19 47 0.68
20 3 0.04
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (19 bp):
TAAAAAATTCTAAAAATAT
Found at i:7808107 original size:9 final size:8
Alignment explanation
Indices: 7808064--7808135 Score: 63
Period size: 9 Copynumber: 8.0 Consensus size: 8
7808054 ATAAAAAATT
7808064 TTTAAAATA
1 TTTAAAA-A
*
7808073 TTCAAAAA
1 TTTAAAAA
7808081 TTTAAAAA
1 TTTAAAAA
7808089 TATTAAAAAA
1 T-TT-AAAAA
7808099 TTCTAAAAA
1 TT-TAAAAA
7808108 CTTTAAAAA
1 -TTTAAAAA
7808117 TTTCAAAAAA
1 TTT--AAAAA
7808127 TTTGAAAAA
1 TTT-AAAAA
7808136 CTTCAAAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
8 12 0.22
9 25 0.46
10 17 0.31
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (8 bp):
TTTAAAAA
Found at i:7808117 original size:28 final size:29
Alignment explanation
Indices: 7808084--7808153 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 29
7808074 TCAAAAATTT
*
7808084 AAAAATATTAAAAAATTCT-AAAAACTT-T
1 AAAAATATTAAAAAATT-TGAAAAACTTCA
7808112 AAAAAT-TTCAAAAAATTTGAAAAACTTCA
1 AAAAATATT-AAAAAATTTGAAAAACTTCA
*
7808141 AAAAAAATTAAAA
1 AAAAATATTAAAA
7808154 TCTTAAAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
27 3 0.08
28 22 0.61
29 9 0.25
30 2 0.06
ACGTcount: A:0.64, C:0.07, G:0.01, T:0.27
Consensus pattern (29 bp):
AAAAATATTAAAAAATTTGAAAAACTTCA
Found at i:7808134 original size:10 final size:9
Alignment explanation
Indices: 7808055--7808145 Score: 69
Period size: 10 Copynumber: 9.8 Consensus size: 9
7808045 TATACAAAAA
7808055 TAAAAAATT
1 TAAAAAATT
**
7808064 TTTAAAATAT
1 TAAAAAAT-T
*
7808074 TCAAAAATT
1 TAAAAAATT
7808083 T-AAAAATAT
1 TAAAAAAT-T
7808092 TAAAAAATT
1 TAAAAAATT
*
7808101 CTAAAAACTT
1 -TAAAAAATT
7808111 T-AAAAATT
1 TAAAAAATT
7808119 TCAAAAAATT
1 T-AAAAAATT
*
7808129 TGAAAAACTT
1 T-AAAAAATT
*
7808139 CAAAAAA
1 TAAAAAA
7808146 AATTAAAATC
Statistics
Matches: 66, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
8 13 0.20
9 17 0.26
10 36 0.55
ACGTcount: A:0.60, C:0.07, G:0.01, T:0.32
Consensus pattern (9 bp):
TAAAAAATT
Found at i:7808286 original size:21 final size:21
Alignment explanation
Indices: 7808261--7808310 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
7808251 AGAAAATACT
7808261 AAAATTTTCTAAA-ATT-AATAA
1 AAAATTTT-TAAATATTCAA-AA
*
7808282 AAAATTCTTAAATATTCAAAA
1 AAAATTTTTAAATATTCAAAA
7808303 AAAATTTT
1 AAAATTTT
7808311 AATTTCTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 4 0.16
21 19 0.76
22 2 0.08
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAATTTTTAAATATTCAAAA
Found at i:7808294 original size:29 final size:29
Alignment explanation
Indices: 7808241--7808303 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
7808231 TTTAGTTTCA
*
7808241 AAAAATTATAAGAAAATACTAAAATTTTC
1 AAAAATTATAAGAAAATACTAAAATATTC
* * *
7808270 TAAAATTAATAA-AAAATTCTTAAATATTC
1 AAAAATT-ATAAGAAAATACTAAAATATTC
7808299 AAAAA
1 AAAAA
7808304 AAATTTTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (29 bp):
AAAAATTATAAGAAAATACTAAAATATTC
Found at i:7808399 original size:10 final size:10
Alignment explanation
Indices: 7808386--7808410 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7808376 AAAAATTCTC
7808386 AAAATTTATA
1 AAAATTTATA
7808396 AAAATTTATA
1 AAAATTTATA
7808406 AAAAT
1 AAAAT
7808411 ACAATTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAATTTATA
Found at i:7808511 original size:9 final size:9
Alignment explanation
Indices: 7808499--7808805 Score: 119
Period size: 9 Copynumber: 32.0 Consensus size: 9
7808489 AAAAATTTCA
7808499 AGAATTTTT
1 AGAATTTTT
7808508 AGAATTTTT
1 AGAATTTTT
7808517 AGAAAATTTTT
1 AG--AATTTTT
7808528 A-AAGTTTTT
1 AGAA-TTTTT
*
7808537 AAAAATTTTT
1 -AGAATTTTT
*
7808547 AAAAGTTTTT
1 AGAA-TTTTT
* *
7808557 ATAATTATGT
1 AGAATT-TTT
*
7808567 A-ATTTTTTT
1 AGA-ATTTTT
7808576 AAGAACTTTTT
1 -AGAA-TTTTT
7808587 A-AATTTTT
1 AGAATTTTT
7808595 ---ATTTTT
1 AGAATTTTT
*
7808601 -GATTTTTT
1 AGAATTTTT
*
7808609 AAATATTTTT
1 AGA-ATTTTT
*
7808619 AAAAATTTACTTT
1 -AGAA-TT--TTT
7808632 AGAATTTTT
1 AGAATTTTT
*
7808641 AGATATTTTG
1 AGA-ATTTTT
*
7808651 AAAATTTGTT
1 AGAATTT-TT
7808661 AGAATTTTT
1 AGAATTTTT
*
7808670 AATAATTTTCT
1 -AGAATTTT-T
7808681 AGAATTTTTTT
1 AGAA--TTTTT
7808692 AG-ATTTTT
1 AGAATTTTT
7808700 AGAATTTTT
1 AGAATTTTT
*
7808709 AAAATTTTT
1 AGAATTTTT
7808718 AGAATTTTT
1 AGAATTTTT
*
7808727 A-ATTTTGTT
1 AGAATTT-TT
**
7808736 TTAATTTTAT
1 AGAATTTT-T
*
7808746 GAAGATTTTTT
1 --AGAATTTTT
*
7808757 AAAATTATGTT
1 AGAATT-T-TT
7808768 AGAATTTTT
1 AGAATTTTT
**
7808777 TTAATTTTT
1 AGAATTTTT
*
7808786 AAAAATTTGTT
1 -AGAATTT-TT
7808797 AGAATTTTT
1 AGAATTTTT
7808806 TTAGAATTTC
Statistics
Matches: 232, Mismatches: 31, Indels: 70
0.70 0.09 0.21
Matches are distributed among these distances:
6 6 0.03
8 23 0.10
9 81 0.35
10 70 0.30
11 37 0.16
12 12 0.05
13 3 0.01
ACGTcount: A:0.35, C:0.01, G:0.08, T:0.57
Consensus pattern (9 bp):
AGAATTTTT
Found at i:7808536 original size:10 final size:10
Alignment explanation
Indices: 7808503--7808557 Score: 60
Period size: 10 Copynumber: 5.6 Consensus size: 10
7808493 ATTTCAAGAA
*
7808503 TTTTTAGAA-
1 TTTTTAAAAG
*
7808512 TTTTTAGAAAA
1 TTTTTA-AAAG
7808523 TTTTT-AAAG
1 TTTTTAAAAG
*
7808532 TTTTTAAAAA
1 TTTTTAAAAG
7808542 TTTTTAAAAG
1 TTTTTAAAAG
7808552 TTTTTA
1 TTTTTA
7808558 TAATTATGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
9 14 0.36
10 20 0.51
11 5 0.13
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (10 bp):
TTTTTAAAAG
Found at i:7808618 original size:32 final size:32
Alignment explanation
Indices: 7808604--7808728 Score: 94
Period size: 29 Copynumber: 4.2 Consensus size: 32
7808594 TATTTTTGAT
7808604 TTTTTAAATATTTTTAAAAATTTACTTTAGAA
1 TTTTTAAATATTTTTAAAAATTTACTTTAGAA
* * *
7808636 TTTTTAGATA-TTTTGAAAATTT--GTTAGAA
1 TTTTTAAATATTTTTAAAAATTTACTTTAGAA
* *
7808665 TTTTT-AATAATTTTCT-AGAATTT-TTTTAG-A
1 TTTTTAAAT-ATTTT-TAAAAATTTACTTTAGAA
*
7808695 TTTTTAGA-ATTTTT-AAAA-TT--TTTAGAA
1 TTTTTAAATATTTTTAAAAATTTACTTTAGAA
7808722 TTTTTAA
1 TTTTTAA
7808729 TTTTGTTTTA
Statistics
Matches: 78, Mismatches: 9, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
26 5 0.06
27 9 0.12
28 6 0.08
29 17 0.22
30 15 0.19
31 17 0.22
32 9 0.12
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (32 bp):
TTTTTAAATATTTTTAAAAATTTACTTTAGAA
Found at i:7808671 original size:51 final size:47
Alignment explanation
Indices: 7808604--7808718 Score: 124
Period size: 51 Copynumber: 2.3 Consensus size: 47
7808594 TATTTTTGAT
*
7808604 TTTTTAAATATTTTTAAAAATTTACTTTAGAA-TTTTTAGATATTTTGAAAA
1 TTTTTAAA-ATTTTTAAAAATTT--TCTAGAATTTTTTAGAT-TTTT-AAAA
* * *
7808655 TTTGTTAGAATTTTTAATAATTTTCTAGAATTTTTTTAGATTTTTAGAA
1 TTT-TTAAAATTTTTAAAAATTTTCTAGAA-TTTTTTAGATTTTTAAAA
7808704 TTTTTAAAATTTTTA
1 TTTTTAAAATTTTTA
7808719 GAATTTTTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
48 11 0.20
49 12 0.21
50 4 0.07
51 25 0.45
52 4 0.07
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (47 bp):
TTTTTAAAATTTTTAAAAATTTTCTAGAATTTTTTAGATTTTTAAAA
Found at i:7808786 original size:29 final size:28
Alignment explanation
Indices: 7808663--7808808 Score: 118
Period size: 29 Copynumber: 5.0 Consensus size: 28
7808653 AATTTGTTAG
7808663 AATTTTTAATAATTT-TCTAGAATTTTTTT
1 AATTTTTAA-AATTTGT-TAGAATTTTTTT
* * **
7808692 AGATTTTTAGAATTT-TTAAAATTTTTAG
1 A-ATTTTTAAAATTTGTTAGAATTTTTTT
* ** **
7808720 AATTTTT-AATTTTGTTTTAATTTTATGA
1 AATTTTTAAAATTTGTTAGAATTTT-TTT
7808748 AGATTTTTTAAAATTATGTTAGAATTTTTTT
1 A-A-TTTTTAAAATT-TGTTAGAATTTTTTT
7808779 AATTTTTAAAAATTTGTTAGAATTTTTTT
1 AATTTTT-AAAATTTGTTAGAATTTTTTT
7808808 A
1 A
7808809 GAATTTCTTA
Statistics
Matches: 94, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
26 4 0.04
27 14 0.15
28 12 0.13
29 29 0.31
30 19 0.20
31 6 0.06
32 10 0.11
ACGTcount: A:0.33, C:0.01, G:0.08, T:0.59
Consensus pattern (28 bp):
AATTTTTAAAATTTGTTAGAATTTTTTT
Found at i:7808804 original size:20 final size:18
Alignment explanation
Indices: 7808501--7808805 Score: 149
Period size: 20 Copynumber: 15.9 Consensus size: 18
7808491 AAATTTCAAG
7808501 AATTTTTAGAATTTTTAGAA
1 AATTTTTAGAATTTTT--AA
7808521 AATTTTTA-AAGTTTTTAAA
1 AATTTTTAGAA-TTTTT-AA
* *
7808540 AATTTTTAAAAGTTTTTAT
1 AATTTTTAGAA-TTTTTAA
* *
7808559 AATTATGTA-ATTTTTTTAA
1 AATT-TTTAGA-ATTTTTAA
7808578 GAACTTTTTA-AATTTTT--
1 -AA-TTTTTAGAATTTTTAA
*
7808595 -ATTTTT-GATTTTTTAA
1 AATTTTTAGAATTTTTAA
* *
7808611 ATATTTTTAAAAATTTACTTTAG
1 A-ATTTTT-AGAA-TT--TTTAA
*
7808634 AATTTTTAGATATTTTGAA
1 AATTTTTAGA-ATTTTTAA
7808653 AATTTGTTAGAATTTTTAA
1 AATTT-TTAGAATTTTTAA
*
7808672 TAATTTTCTAGAATTTTTTTA
1 -AATTTT-TAGAA-TTTTTAA
*
7808693 GATTTTTAGAATTTTTAA
1 AATTTTTAGAATTTTTAA
7808711 AATTTTTAGAATTTTT-A
1 AATTTTTAGAATTTTTAA
* **
7808728 ATTTTGTTTTAATTTTATGAA
1 AATTT-TTAGAATTTT-T-AA
* * *
7808749 GATTTTTTAAAATTATGTTAG
1 -AATTTTTAGAATT-T-TTAA
**
7808770 AATTTTTTTAATTTTTAAA
1 AATTTTTAGAATTTTT-AA
7808789 AATTTGTTAGAATTTTT
1 AATTT-TTAGAATTTTT
7808806 TTAGAATTTC
Statistics
Matches: 224, Mismatches: 31, Indels: 60
0.71 0.10 0.19
Matches are distributed among these distances:
14 11 0.05
15 1 0.00
17 5 0.02
18 37 0.17
19 58 0.26
20 70 0.31
21 22 0.10
22 14 0.06
23 6 0.03
ACGTcount: A:0.34, C:0.01, G:0.08, T:0.57
Consensus pattern (18 bp):
AATTTTTAGAATTTTTAA
Found at i:7809454 original size:10 final size:9
Alignment explanation
Indices: 7809387--7809491 Score: 58
Period size: 9 Copynumber: 11.8 Consensus size: 9
7809377 AAGAAAATCA
*
7809387 TAAAAAGTT
1 TAAAAATTT
7809396 T-AAAATTT
1 TAAAAATTT
* *
7809404 TAAAAAATC
1 TAAAAATTT
7809413 TAAAATATTT
1 TAAAA-ATTT
* *
7809423 AAAAAAATTA
1 -TAAAAATTT
7809433 TAAAAA---
1 TAAAAATTT
*
7809439 -ATAAATTT
1 TAAAAATTT
7809447 TGAAAAATTT
1 T-AAAAATTT
*
7809457 TAAAAATGT
1 TAAAAATTT
7809466 TAAAAATTT
1 TAAAAATTT
* *
7809475 AAGAAAACTT
1 TA-AAAATTT
7809485 TAAAAAT
1 TAAAAAT
7809492 GAAAAAAAAA
Statistics
Matches: 71, Mismatches: 16, Indels: 18
0.68 0.15 0.17
Matches are distributed among these distances:
5 4 0.06
8 7 0.10
9 36 0.51
10 20 0.28
11 4 0.06
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (9 bp):
TAAAAATTT
Done.