Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 31 of 130
Found at i:7809481 original size:19 final size:18
Alignment explanation
Indices: 7809449--7809491 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
7809439 ATAAATTTTG
*
7809449 AAAAATTTTAAAAA-TGTT
1 AAAAATTTAAAAAACT-TT
7809467 AAAAATTTAAGAAAACTTT
1 AAAAATTTAA-AAAACTTT
7809486 AAAAAT
1 AAAAAT
7809492 GAAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 12 0.55
20 1 0.05
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (18 bp):
AAAAATTTAAAAAACTTT
Found at i:7809529 original size:20 final size:20
Alignment explanation
Indices: 7809466--7809529 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 20
7809456 TTAAAAATGT
* * *
7809466 TAAAAAT-TTAAGAAAACTT
1 TAAAAATGTTAAAAAAAATC
*
7809485 TAAAAATG-AAAAAAAAATC
1 TAAAAATGTTAAAAAAAATC
*
7809504 -ACAAAATGTTAATAAAAATC
1 TA-AAAATGTTAAAAAAAATC
7809524 TAAAAA
1 TAAAAA
7809530 ATTAAAGTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
18 1 0.03
19 20 0.57
20 13 0.37
21 1 0.03
ACGTcount: A:0.66, C:0.06, G:0.05, T:0.23
Consensus pattern (20 bp):
TAAAAATGTTAAAAAAAATC
Found at i:7809765 original size:28 final size:29
Alignment explanation
Indices: 7809703--7809767 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
7809693 TTAATCTTAC
*
7809703 AATTTTAATTTTTTTAATATATTTTATGA
1 AATTTTAATTTTTTTAATATATTTTATAA
* * *
7809732 ATTTTTAATTTTTTT-GT-TTTTTTATTAA
1 AATTTTAATTTTTTTAATATATTTTA-TAA
7809760 AATTTTAA
1 AATTTTAA
7809768 AATTTTAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 6 0.20
28 10 0.33
29 14 0.47
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (29 bp):
AATTTTAATTTTTTTAATATATTTTATAA
Found at i:7809873 original size:44 final size:43
Alignment explanation
Indices: 7809790--7809920 Score: 115
Period size: 44 Copynumber: 3.0 Consensus size: 43
7809780 TTTAATTAAA
* * *
7809790 AAATTTTTAGAACATTTAAGATTTTTTAATTTTTTAATTTTCAG
1 AAATTTTAAAAACATTTAAGATTTTTT-ATTTTTAAATTTTCAG
*
7809834 AAATTTTAAAAACTTTTAAGACTTTTTT-TTTTATAAATTTTC--
1 AAATTTTAAAAACATTTAAGA-TTTTTTATTTT-TAAATTTTCAG
* * * *
7809876 ATATTTTAAAAAATATTTTAGATTTTTTAATTTTCTAAAATTTCA
1 AAATTTT-AAAAACATTTAAGATTTTTT-ATTTT-TAAATTTTCA
7809921 AAAAAATTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
42 12 0.17
43 15 0.21
44 38 0.54
45 6 0.08
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.54
Consensus pattern (43 bp):
AAATTTTAAAAACATTTAAGATTTTTTATTTTTAAATTTTCAG
Found at i:7809910 original size:35 final size:34
Alignment explanation
Indices: 7809869--7809944 Score: 82
Period size: 35 Copynumber: 2.2 Consensus size: 34
7809859 TTTTTTTATA
* *
7809869 AATTTTC-ATATTTTAAAAAATATTTTAGATTTTTT
1 AATTTTCAAAATTTCAAAAAA-A-TTTAGATTTTTT
*
7809904 AATTTTCTAAAATTTCAAAAAAATTTAGGTTTTTT
1 AATTTTC-AAAATTTCAAAAAAATTTAGATTTTTT
*
7809939 ATTTTT
1 AATTTT
7809945 ATTTTCATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
35 23 0.66
36 1 0.03
37 11 0.31
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (34 bp):
AATTTTCAAAATTTCAAAAAAATTTAGATTTTTT
Found at i:7810017 original size:18 final size:18
Alignment explanation
Indices: 7809978--7810035 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 18
7809968 TGAATAATTT
* **
7809978 TTTTTAATTTTAAGAAAA
1 TTTTTATTTTTATTAAAA
7809996 -TTTTATTTTTATTAAAA
1 TTTTTATTTTTATTAAAA
7810013 TTTTTATTGTTT-TTGAAAA
1 TTTTTATT-TTTATT-AAAA
7810032 TTTT
1 TTTT
7810036 AAAATTTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 14 0.41
18 9 0.26
19 11 0.32
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TTTTTATTTTTATTAAAA
Found at i:7810036 original size:18 final size:18
Alignment explanation
Indices: 7809991--7810036 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
7809981 TTAATTTTAA
7809991 GAAAATTTTATTTTTATT
1 GAAAATTTTATTTTTATT
7810009 -AAAATTTTTATTGTTT-TT
1 GAAAA-TTTTATT-TTTATT
7810027 GAAAATTTTA
1 GAAAATTTTA
7810037 AAATTTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.16
18 14 0.56
19 7 0.28
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.59
Consensus pattern (18 bp):
GAAAATTTTATTTTTATT
Found at i:7810183 original size:28 final size:25
Alignment explanation
Indices: 7810145--7810223 Score: 70
Period size: 28 Copynumber: 3.0 Consensus size: 25
7810135 TTTTTATTTT
*
7810145 TTTTTATAAATTTTTAAATTATTTCAGA
1 TTTTTAAAAATTTTTAAATT-TTT-A-A
7810173 TTTTTAAAAATTAATTTAAAATTTTTAA
1 TTTTTAAAAATT--TTT-AAATTTTTAA
* *
7810201 -TTTTAAAATTTTTTAAAATTTTA
1 TTTTTAAAAATTTTTAAATTTTTA
7810224 TTTGAACTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
24 8 0.18
25 3 0.07
27 10 0.22
28 12 0.27
29 1 0.02
30 6 0.13
31 5 0.11
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (25 bp):
TTTTTAAAAATTTTTAAATTTTTAA
Found at i:7810185 original size:20 final size:21
Alignment explanation
Indices: 7810147--7810200 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
7810137 TTTATTTTTT
7810147 TTTATAAATTTTT--AAATT-A
1 TTTA-AAATTTTTAAAAATTAA
* *
7810166 TTTCAGATTTTTAAAAATTAA
1 TTTAAAATTTTTAAAAATTAA
7810187 TTTAAAATTTTTAA
1 TTTAAAATTTTTAA
7810201 TTTTAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 7 0.25
19 3 0.11
20 5 0.18
21 13 0.46
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
TTTAAAATTTTTAAAAATTAA
Found at i:7810200 original size:14 final size:15
Alignment explanation
Indices: 7810183--7810213 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7810173 TTTTTAAAAA
7810183 TTAA-TTTAAAATTT
1 TTAATTTTAAAATTT
7810197 TTAATTTTAAAATTT
1 TTAATTTTAAAATTT
7810212 TT
1 TT
7810214 TAAAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTAATTTTAAAATTT
Found at i:7812930 original size:2 final size:2
Alignment explanation
Indices: 7812923--7812954 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7812913 GCCAACCATA
7812923 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7812955 GATGATGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7836217 original size:21 final size:21
Alignment explanation
Indices: 7836179--7836218 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7836169 AGCTTCACTA
*
7836179 TCAGCTCGTTCACCTTTTTTC
1 TCAGCTCGATCACCTTTTTTC
*
7836200 TCAGCTCGATC-TCTTTTTT
1 TCAGCTCGATCACCTTTTTT
7836219 GTGGAACACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.10, C:0.30, G:0.10, T:0.50
Consensus pattern (21 bp):
TCAGCTCGATCACCTTTTTTC
Found at i:7858335 original size:20 final size:20
Alignment explanation
Indices: 7858312--7858353 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
7858302 AGAGAAAGAA
7858312 CTGCGACTTTGTAGAACCTC
1 CTGCGACTTTGTAGAACCTC
7858332 CTGCGACTTTGTAGAACCTC
1 CTGCGACTTTGTAGAACCTC
7858352 CT
1 CT
7858354 AGTAATGTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.31
Consensus pattern (20 bp):
CTGCGACTTTGTAGAACCTC
Found at i:7873531 original size:18 final size:18
Alignment explanation
Indices: 7873495--7873532 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7873485 AGGAGCAGAA
*
7873495 GAAGAAGAAGATGATGAT
1 GAAGAAGAAGACGATGAT
7873513 GAAGAAGGAAGACGA-GAT
1 GAAGAA-GAAGACGATGAT
7873531 GA
1 GA
7873533 GTTTGAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.50, C:0.03, G:0.37, T:0.11
Consensus pattern (18 bp):
GAAGAAGAAGACGATGAT
Found at i:7881262 original size:13 final size:13
Alignment explanation
Indices: 7881244--7881268 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7881234 TCTTTGTTGC
7881244 GAAGTACAGATGT
1 GAAGTACAGATGT
7881257 GAAGTACAGATG
1 GAAGTACAGATG
7881269 CTGGATGTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.32, T:0.20
Consensus pattern (13 bp):
GAAGTACAGATGT
Found at i:7899135 original size:20 final size:19
Alignment explanation
Indices: 7899110--7899147 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7899100 TATCTTCGAT
7899110 TTGCAGCCTTTGCTTTTTAG
1 TTGCAG-CTTTGCTTTTTAG
*
7899130 TTGCAGTTTTGCTTTTTA
1 TTGCAGCTTTGCTTTTTA
7899148 ATTGATAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.11, C:0.16, G:0.18, T:0.55
Consensus pattern (19 bp):
TTGCAGCTTTGCTTTTTAG
Found at i:7899267 original size:21 final size:21
Alignment explanation
Indices: 7899243--7899282 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7899233 TTTTTCATGT
7899243 ATTATTAAT-TATTAGGTTTTA
1 ATTATTAATGTA-TAGGTTTTA
*
7899264 ATTATTTATGTATAGGTTT
1 ATTATTAATGTATAGGTTT
7899283 ATTGAAGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (21 bp):
ATTATTAATGTATAGGTTTTA
Found at i:7903858 original size:20 final size:20
Alignment explanation
Indices: 7903833--7903873 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7903823 ATAAAATTGC
7903833 TAATAAATAATAAAATTTAT
1 TAATAAATAATAAAATTTAT
* *
7903853 TAATAAGTAATAAATTTTAT
1 TAATAAATAATAAAATTTAT
7903873 T
1 T
7903874 TATGATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TAATAAATAATAAAATTTAT
Found at i:7905065 original size:18 final size:18
Alignment explanation
Indices: 7905036--7905071 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
7905026 TATGTATTTT
7905036 TTTTTAATATTATGAATAA
1 TTTTTAATATTAT-AATAA
7905055 TTTTTAA-ATTATAATAA
1 TTTTTAATATTATAATAA
7905072 AATATTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 5 0.29
19 7 0.41
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTTTAATATTATAATAA
Found at i:7905086 original size:31 final size:31
Alignment explanation
Indices: 7905051--7905146 Score: 99
Period size: 31 Copynumber: 3.2 Consensus size: 31
7905041 AATATTATGA
7905051 ATAATTTTTAAATTATAATAAAATATTTAAT
1 ATAATTTTTAAATTATAATAAAATATTTAAT
* *
7905082 ATAATATTTAAAATT-TAA-AAACT-TTTAAT
1 ATAAT-TTTTAAATTATAATAAAATATTTAAT
* * * * *
7905111 ATAATATTTAAATTATGATATATTAATTAAT
1 ATAATTTTTAAATTATAATAAAATATTTAAT
7905142 ATAAT
1 ATAAT
7905147 ATATAAAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
28 7 0.13
29 13 0.25
30 7 0.13
31 18 0.34
32 8 0.15
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (31 bp):
ATAATTTTTAAATTATAATAAAATATTTAAT
Found at i:7906540 original size:22 final size:24
Alignment explanation
Indices: 7906514--7906563 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 24
7906504 TGATATATAA
*
7906514 TTTATTTAAAT-ATAT-TAAAATT
1 TTTATTAAAATAATATATAAAATT
*
7906536 TTTATTAAAATAATATATAATATT
1 TTTATTAAAATAATATATAAAATT
7906560 TTTA
1 TTTA
7906564 AAATTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.42
23 4 0.17
24 10 0.42
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTATTAAAATAATATATAAAATT
Found at i:7906564 original size:21 final size:19
Alignment explanation
Indices: 7906506--7906567 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 19
7906496 AATTGTTTTG
7906506 ATATATAATTTATTT-AAAT
1 ATATATAATTT-TTTAAAAT
*
7906525 ATATTAAAATTTTTATTAAAAT
1 ATA-TATAA-TTTT-TTAAAAT
7906547 AATATATAATATTTTTAAAAT
1 -ATATATAAT-TTTTTAAAAT
7906568 TTTAAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
19 3 0.09
20 5 0.14
21 13 0.37
22 11 0.31
23 3 0.09
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATATAATTTTTTAAAAT
Found at i:7909007 original size:16 final size:14
Alignment explanation
Indices: 7908977--7909020 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 14
7908967 TTATAAGAGA
7908977 TAATATTTAAATTT
1 TAATATTTAAATTT
7908991 TAATATTTATCAATTT
1 TAATATTTA--AATTT
*
7909007 TTATATTTTAAATT
1 TAATA-TTTAAATT
7909021 ATGGTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 9 0.35
15 4 0.15
16 9 0.35
17 4 0.15
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (14 bp):
TAATATTTAAATTT
Found at i:7910523 original size:24 final size:25
Alignment explanation
Indices: 7910479--7910525 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
7910469 ATTTTATATG
**
7910479 TTTTAAAATTTTAATTAATGTATTT
1 TTTTAAAAAATTAATTAATGTATTT
7910504 TTTTAAAAAATTAATT-ATGTAT
1 TTTTAAAAAATTAATTAATGTAT
7910526 ATATTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (25 bp):
TTTTAAAAAATTAATTAATGTATTT
Found at i:7911972 original size:2 final size:2
Alignment explanation
Indices: 7911965--7911993 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7911955 AGCCCCATTC
7911965 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7911994 AAACAAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7920650 original size:2 final size:2
Alignment explanation
Indices: 7920643--7920673 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7920633 AAAAGAAACA
7920643 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7920674 GTTATTGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7921661 original size:21 final size:22
Alignment explanation
Indices: 7921636--7921676 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7921626 GAGTTACGAT
* *
7921636 AAAAGT-GTTTTTTTTTTTTTA
1 AAAAGTAGTATTTATTTTTTTA
7921657 AAAAGTAGTATTTATTTTTT
1 AAAAGTAGTATTTATTTTTT
7921677 GAATGGATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (22 bp):
AAAAGTAGTATTTATTTTTTTA
Found at i:7927720 original size:2 final size:2
Alignment explanation
Indices: 7927713--7927746 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7927703 ACACCTGGGG
7927713 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7927747 AAGAAGAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7932304 original size:21 final size:21
Alignment explanation
Indices: 7932278--7932322 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
7932268 ATCAATATAA
*
7932278 AAATATAATTTTTA-TTTTATT
1 AAATAT-ATTTATAGTTTTATT
7932299 AAATATATTTATAGTTTTATT
1 AAATATATTTATAGTTTTATT
7932320 AAA
1 AAA
7932323 ATTTTAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
AAATATATTTATAGTTTTATT
Found at i:7936914 original size:43 final size:43
Alignment explanation
Indices: 7936866--7936947 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
7936856 ATAGTAAGTC
* *
7936866 GTCTTACTCTGAGTATATGATCATATGGCCACTTGTGTTAGTT
1 GTCTTACTATGAGTATATGATCATATAGCCACTTGTGTTAGTT
*
7936909 GTCTTAGTATGAGTATATGATCATATAGCCACTTGTGTT
1 GTCTTACTATGAGTATATGATCATATAGCCACTTGTGTT
7936948 TTGGCCTGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (43 bp):
GTCTTACTATGAGTATATGATCATATAGCCACTTGTGTTAGTT
Found at i:7944469 original size:33 final size:38
Alignment explanation
Indices: 7944396--7944474 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
7944386 AAAATTTTCA
7944396 ATTAATTTTAACGTCGAACATAATAATATATTGATTTG
1 ATTAATTTTAACGTCGAACATAATAATATATTGATTTG
7944434 ATTAATTTTAACGTCGAACATAATAATATATTGATTTG
1 ATTAATTTTAACGTCGAACATAATAATATATTGATTTG
7944472 ATT
1 ATT
7944475 TTGTTCGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (38 bp):
ATTAATTTTAACGTCGAACATAATAATATATTGATTTG
Found at i:7945168 original size:15 final size:16
Alignment explanation
Indices: 7945145--7945174 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7945135 TCACTTTTTT
7945145 AAATATTTAATAAATA
1 AAATATTTAATAAATA
7945161 AAAT-TTTAATAAAT
1 AAATATTTAATAAAT
7945175 TTTATCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATATTTAATAAATA
Found at i:7947465 original size:3 final size:3
Alignment explanation
Indices: 7947457--7947503 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
7947447 GTTTTTCTTG
7947457 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7947504 CAACACCTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7947977 original size:2 final size:2
Alignment explanation
Indices: 7947970--7947999 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7947960 CACTATACAG
7947970 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7948000 TACGTTAGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7950687 original size:2 final size:2
Alignment explanation
Indices: 7950680--7950716 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7950670 AGGATTTTCA
7950680 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7950717 TTTTAGGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:7955010 original size:43 final size:43
Alignment explanation
Indices: 7954962--7955043 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
7954952 ATAGTAAGTC
* *
7954962 GTCTTACTCTGAGTATATGATCATATGGCCACTTGTGTTAGTT
1 GTCTTACTATGAGTATATGATCATATAGCCACTTGTGTTAGTT
*
7955005 GTCTTAGTATGAGTATATGATCATATAGCCACTTGTGTT
1 GTCTTACTATGAGTATATGATCATATAGCCACTTGTGTT
7955044 TTGGCCTGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (43 bp):
GTCTTACTATGAGTATATGATCATATAGCCACTTGTGTTAGTT
Found at i:7963246 original size:15 final size:16
Alignment explanation
Indices: 7963223--7963252 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7963213 TCAATTTTTT
7963223 AAATATTTAATAAATA
1 AAATATTTAATAAATA
7963239 AAAT-TTTAATAAAT
1 AAATATTTAATAAAT
7963253 TTTATCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATATTTAATAAATA
Found at i:7963545 original size:20 final size:20
Alignment explanation
Indices: 7963513--7963571 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 20
7963503 TTTTTTATCA
*
7963513 TTTTTTTT-CTATTTACTTT
1 TTTTTTTTAATATTTACTTT
*
7963532 TTTTTTTTAATATTTA-TAT
1 TTTTTTTTAATATTTACTTT
* *
7963551 ATTTTTATAATATTTTACTTT
1 TTTTTTTTAATA-TTTACTTT
7963572 AAGACAAACT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
19 20 0.62
20 10 0.31
21 2 0.06
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTTTTTAATATTTACTTT
Found at i:7965520 original size:3 final size:3
Alignment explanation
Indices: 7965512--7965555 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7965502 ATAGTTTTTC
7965512 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7965556 CAACACCTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7966023 original size:2 final size:2
Alignment explanation
Indices: 7966016--7966065 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
7966006 CACTATACAG
7966016 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7966058 GA GA GA GA
1 GA GA GA GA
7966066 TACGTTAGCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7971090 original size:191 final size:192
Alignment explanation
Indices: 7970766--7971136 Score: 672
Period size: 191 Copynumber: 1.9 Consensus size: 192
7970756 ATCCACTGCA
* * * *
7970766 AAAATGAAGCTGAAAATGGATAATCAAAAACTAGTGCAGATCTCTCATGGTCATACCAAAGAGAC
1 AAAATGAAGATGAAAATGGACAATAAAAAACTAGTGCAGATCTCCCATGGTCATACCAAAGAGAC
*
7970831 ATAAAAGCATGAAAAAGATCAGTATTATACTTTTGACATTTAATTACCTTACTATCAATGTAATT
66 ATAAAAGCATGAAAAAGACCAGTATTATACTTTTGACATTTAATTACCTTACTATCAATGTAATT
*
7970896 TTAAAAGCAGGAGACTGCTTTTAATTGTCAATTATATGTCA-GAAAAAAACAGTTTTAAGGG
131 TTAAAAGCAGGAGACTGCTTTTAATTGTCAATTATATGACAGGAAAAAAACAGTTTTAAGGG
7970957 AAAATGAAGATGAAAATGGACAATAAAAAACTAGTGCAGATCTCCCATGGTCATACCAAAGAGAC
1 AAAATGAAGATGAAAATGGACAATAAAAAACTAGTGCAGATCTCCCATGGTCATACCAAAGAGAC
*
7971022 ATAAGAGCATGAAAAAGACCAGTATTATACTTTTGACATTTAATTACCTTACTATCAATGTAATT
66 ATAAAAGCATGAAAAAGACCAGTATTATACTTTTGACATTTAATTACCTTACTATCAATGTAATT
7971087 TTAAAAGCAGGAGACTGCTTTTAATTGTCAATTATATGACAGGAAAAAAA
131 TTAAAAGCAGGAGACTGCTTTTAATTGTCAATTATATGACAGGAAAAAAA
7971137 AAAAACAATT
Statistics
Matches: 172, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
191 164 0.95
192 8 0.05
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (192 bp):
AAAATGAAGATGAAAATGGACAATAAAAAACTAGTGCAGATCTCCCATGGTCATACCAAAGAGAC
ATAAAAGCATGAAAAAGACCAGTATTATACTTTTGACATTTAATTACCTTACTATCAATGTAATT
TTAAAAGCAGGAGACTGCTTTTAATTGTCAATTATATGACAGGAAAAAAACAGTTTTAAGGG
Found at i:7990420 original size:7 final size:7
Alignment explanation
Indices: 7990408--7990433 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7990398 ATATATTTTG
7990408 AAATTTA
1 AAATTTA
7990415 AAATTTA
1 AAATTTA
7990422 AAATTTA
1 AAATTTA
7990429 AAATT
1 AAATT
7990434 ATTAAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
AAATTTA
Found at i:7990446 original size:10 final size:10
Alignment explanation
Indices: 7990426--7990478 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
7990416 AATTTAAAAT
7990426 TTAAA-ATTA
1 TTAAATATTA
7990435 TTAAATATTA
1 TTAAATATTA
*
7990445 TTAAA-ATGA
1 TTAAATATTA
7990454 TTTAAAT-TTA
1 -TTAAATATTA
*
7990464 TCAAATATTA
1 TTAAATATTA
7990474 -TAAAT
1 TTAAAT
7990479 TAATTAAACT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 17 0.47
10 19 0.53
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (10 bp):
TTAAATATTA
Found at i:7990473 original size:36 final size:37
Alignment explanation
Indices: 7990417--7990486 Score: 85
Period size: 36 Copynumber: 1.9 Consensus size: 37
7990407 GAAATTTAAA
7990417 ATTTAAAATTTAAAATTATTA-AATATT-ATTAAAATG
1 ATTTAAAATTTAAAATTATTATAA-ATTAATTAAAATG
7990453 ATTT-AAATTTATCAAA-TATTATAAATTAATTAAA
1 ATTTAAAATTTA--AAATTATTATAAATTAATTAAA
7990487 CTAAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
35 7 0.23
36 12 0.40
37 11 0.37
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (37 bp):
ATTTAAAATTTAAAATTATTATAAATTAATTAAAATG
Found at i:7993408 original size:53 final size:51
Alignment explanation
Indices: 7993351--7993522 Score: 131
Period size: 51 Copynumber: 3.3 Consensus size: 51
7993341 TTGGGTCAAA
7993351 TTAGAAATATTTTTTTGTTTTGAATTTTTAAATTCTTCACCATTTGGCCTTAT
1 TTAGAAATATTTTTTT-TTTTGAATTTTTAAATT-TTCACCATTTGGCCTTAT
** * ** *
7993404 TTAG-AAT-TTTTTTATTTTTTTATTTCTAAAATTTTCACCATTT-GAATCGAT
1 TTAGAAATATTTTTT-TTTTTGAATTT-TTAAATTTTCACCATTTGGCCT-TAT
** * *
7993455 TTAGAAATATTTTCTTTTTCAGAATTTCTAGATTTTCCACCATTTGGGCC-TAT
1 TTAGAAATATTTT-TTTTTTTGAATTTTTAAATTTT-CACCATTT-GGCCTTAT
*
7993508 TTA-AAA-ATTTCTTTT
1 TTAGAAATATTTTTTTT
7993523 ATCTTTTTTT
Statistics
Matches: 93, Mismatches: 17, Indels: 21
0.71 0.13 0.16
Matches are distributed among these distances:
50 6 0.06
51 34 0.37
52 22 0.24
53 28 0.30
54 2 0.02
55 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.08, T:0.53
Consensus pattern (51 bp):
TTAGAAATATTTTTTTTTTTGAATTTTTAAATTTTCACCATTTGGCCTTAT
Found at i:7993440 original size:104 final size:107
Alignment explanation
Indices: 7993332--7993531 Score: 250
Period size: 104 Copynumber: 1.9 Consensus size: 107
7993322 TATCTAATTA
** ** *
7993332 TTTCACCATTTGGGTCAAATTAGAAATATTTT-TTTGTTTTGAATTTTTAAATTCTT-CACCATT
1 TTTCACCATTTGAATCAAATTAGAAATATTTTCTTT-TTCAGAATTTCTAAATT-TTCCACCATT
*
7993395 T-GGCCTTATTT-AGAATTT-TTTTAT-TTTTTTATTTCTAAAAT
64 TGGGCC-TATTTAAAAATTTCTTTTATCTTTTTTATTTCTAAAAT
* * *
7993436 TTTCACCATTTGAATCGATTTAGAAATATTTTCTTTTTCAGAATTTCTAGATTTTCCACCATTTG
1 TTTCACCATTTGAATCAAATTAGAAATATTTTCTTTTTCAGAATTTCTAAATTTTCCACCATTTG
7993501 GGCCTATTTAAAAATTTCTTTTATCTTTTTT
66 GGCCTATTTAAAAATTTCTTTTATCTTTTTT
7993532 TTTTATTTTT
Statistics
Matches: 81, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
103 2 0.02
104 54 0.67
105 13 0.16
106 6 0.07
107 6 0.07
ACGTcount: A:0.26, C:0.13, G:0.09, T:0.53
Consensus pattern (107 bp):
TTTCACCATTTGAATCAAATTAGAAATATTTTCTTTTTCAGAATTTCTAAATTTTCCACCATTTG
GGCCTATTTAAAAATTTCTTTTATCTTTTTTATTTCTAAAAT
Found at i:7993473 original size:51 final size:49
Alignment explanation
Indices: 7993332--7993473 Score: 124
Period size: 52 Copynumber: 2.8 Consensus size: 49
7993322 TATCTAATTA
* *
7993332 TTTCACCATTTGGGTCAAATTAGAAATATTTTTTTGTTTTGAATTTTTAAAT
1 TTTCACCATTT-GGTCAATTTAGAAATATTTTTTT-TTTT-AATTTTAAAAT
* * * *
7993384 TCTTCACCATTTGGCCTTATTTAG-AATTTTTTTATTTTTTTATTTCTAAAAT
1 T-TTCACCATTTGGTC-AATTTAGAAATATTTTT-TTTTTTAATTT-TAAAAT
* * *
7993436 TTTCACCATTTGAATCGATTTAGAAATATTTTCTTTTT
1 TTTCACCATTTG-GTCAATTTAGAAATATTTTTTTTTT
7993474 CAGAATTTCT
Statistics
Matches: 73, Mismatches: 11, Indels: 13
0.75 0.11 0.13
Matches are distributed among these distances:
51 26 0.36
52 30 0.41
53 17 0.23
ACGTcount: A:0.26, C:0.11, G:0.08, T:0.54
Consensus pattern (49 bp):
TTTCACCATTTGGTCAATTTAGAAATATTTTTTTTTTTAATTTTAAAAT
Found at i:7993957 original size:29 final size:27
Alignment explanation
Indices: 7993924--7993992 Score: 81
Period size: 29 Copynumber: 2.6 Consensus size: 27
7993914 CTAATCATGC
7993924 AAAATACTAAAAAAGATAAACACATAAA
1 AAAATACTAAAAAAGATAAACACA-AAA
*
7993952 TAAAATACTAAATAAA-ATAAATACAAAA
1 -AAAATACTAAA-AAAGATAAACACAAAA
7993980 AAAA-AC-AAAAAAG
1 AAAATACTAAAAAAG
7993993 GCTCAACTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
24 3 0.08
25 3 0.08
26 2 0.05
27 4 0.11
28 3 0.08
29 19 0.51
30 3 0.08
ACGTcount: A:0.74, C:0.09, G:0.03, T:0.14
Consensus pattern (27 bp):
AAAATACTAAAAAAGATAAACACAAAA
Found at i:7996921 original size:7 final size:8
Alignment explanation
Indices: 7996904--7996931 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7996894 ATTCTCAAAA
7996904 TTTATTTT
1 TTTATTTT
7996912 TTTATTTT
1 TTTATTTT
7996920 TTTATTTT
1 TTTATTTT
7996928 TTTA
1 TTTA
7996932 AAATTTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTATTTT
Found at i:7997624 original size:15 final size:16
Alignment explanation
Indices: 7997600--7997637 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7997590 ACTTATTATG
*
7997600 TTTTTATGTT-TCTAT
1 TTTTTTTGTTCTCTAT
7997615 TTTTTTTGTTCTCTAT
1 TTTTTTTGTTCTCTAT
7997631 TTTTTTT
1 TTTTTTT
7997638 CCTCTTTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.08, C:0.08, G:0.05, T:0.79
Consensus pattern (16 bp):
TTTTTTTGTTCTCTAT
Found at i:7997824 original size:16 final size:16
Alignment explanation
Indices: 7997803--7997841 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
7997793 CTATTCTTCC
7997803 ATTTTTTTCATTTTTT
1 ATTTTTTTCATTTTTT
*
7997819 ATTTTTTTTATTTTTT
1 ATTTTTTTCATTTTTT
7997835 ATTTTTT
1 ATTTTTT
7997842 AATTAACCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.85
Consensus pattern (16 bp):
ATTTTTTTCATTTTTT
Found at i:8002811 original size:20 final size:21
Alignment explanation
Indices: 8002788--8002826 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
8002778 TTTCTAGAAC
*
8002788 TCAATATAGTTTTT-AAAAAA
1 TCAACATAGTTTTTGAAAAAA
*
8002808 TCAACATATTTTTTGAAAA
1 TCAACATAGTTTTTGAAAA
8002827 TATATTTTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (21 bp):
TCAACATAGTTTTTGAAAAAA
Found at i:8004083 original size:5 final size:6
Alignment explanation
Indices: 8004068--8004093 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8004058 AATCATTTGC
8004068 TTTTTA TTTTTA TTTTTA TTTTTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TT
8004094 CACTTTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:8004422 original size:15 final size:15
Alignment explanation
Indices: 8004404--8004438 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8004394 TTTGTTTTAA
8004404 TTTTTTCATAAATAT
1 TTTTTTCATAAATAT
**
8004419 TTTTTTCATTTATAT
1 TTTTTTCATAAATAT
8004434 TTTTT
1 TTTTT
8004439 AAATGTAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTTCATAAATAT
Found at i:8004602 original size:17 final size:16
Alignment explanation
Indices: 8004576--8004621 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
8004566 TCATGCTAGT
* *
8004576 TTTTTTTTTTTTTTTA
1 TTTTTCTTTTTTATTA
8004592 CTTTTTCTTTTTCTATTA
1 -TTTTTCTTTTT-TATTA
8004610 TTTTTCTTTTTT
1 TTTTTCTTTTTT
8004622 GGATCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 1 0.04
17 21 0.81
18 4 0.15
ACGTcount: A:0.07, C:0.09, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTCTTTTTTATTA
Found at i:8005084 original size:13 final size:13
Alignment explanation
Indices: 8005066--8005095 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
8005056 TTGCTTTTTT
8005066 TTTTCTATTATTA
1 TTTTCTATTATTA
8005079 TTTTCTATTATTA
1 TTTTCTATTATTA
8005092 TTTT
1 TTTT
8005096 TTCTTATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTCTATTATTA
Found at i:8007795 original size:27 final size:26
Alignment explanation
Indices: 8007740--8007798 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
8007730 TTTTTGAGGC
*
8007740 TTTTTATTTTTATTTTTTTAATTAGAT
1 TTTTTATTTTTATTTTTTT-ATTAAAT
*
8007767 TTTTTCTTTTTCATTTTATTT-TTAAAT
1 TTTTTATTTTT-ATTTT-TTTATTAAAT
8007794 TTTTT
1 TTTTT
8007799 TGTTCTTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 20 0.71
28 5 0.18
29 3 0.11
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.76
Consensus pattern (26 bp):
TTTTTATTTTTATTTTTTTATTAAAT
Found at i:8018008 original size:42 final size:42
Alignment explanation
Indices: 8017948--8018043 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
8017938 GAAAAAAGCA
* *
8017948 AAGAATAGTTTTGGAGAGATTGAAGGCAAAAG-GTGCAAATTTG
1 AAGAAAAG-TTTGGAGAGATTGAAGGC-AAAGTATGCAAATTTG
* * *
8017991 AAGAAGAGTTTGGAGAGATTGATGGCCAAGTATGCAAATTTG
1 AAGAAAAGTTTGGAGAGATTGAAGGCAAAGTATGCAAATTTG
*
8018033 ATGAAAAGTTT
1 AAGAAAAGTTT
8018044 TAGAGTTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
41 3 0.07
42 36 0.78
43 7 0.15
ACGTcount: A:0.39, C:0.05, G:0.29, T:0.27
Consensus pattern (42 bp):
AAGAAAAGTTTGGAGAGATTGAAGGCAAAGTATGCAAATTTG
Found at i:8020233 original size:34 final size:35
Alignment explanation
Indices: 8020189--8020272 Score: 102
Period size: 34 Copynumber: 2.5 Consensus size: 35
8020179 TTACACAAAA
*
8020189 TTTCAAAAATAAATATT-TAAAAAGTCATA-AATTT
1 TTTCGAAAATAAAT-TTATAAAAAGTCATATAATTT
*
8020223 TTTCGAAAATAAATTTATAAACAGTCATATAATTT
1 TTTCGAAAATAAATTTATAAAAAGTCATATAATTT
* *
8020258 ATT-GAAAATAGATTT
1 TTTCGAAAATAAATTT
8020273 TCGAAAACCT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
33 2 0.05
34 35 0.80
35 7 0.16
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (35 bp):
TTTCGAAAATAAATTTATAAAAAGTCATATAATTT
Found at i:8021000 original size:22 final size:21
Alignment explanation
Indices: 8020975--8021046 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
8020965 TATTTATCTT
*
8020975 TTTTTAAAATGTTTTAAAATTA
1 TTTTTAAAAT-ATTTAAAATTA
** *
8020997 TTTTTTTAATATTTAAAATTC
1 TTTTTAAAATATTTAAAATTA
* *
8021018 TTTTCTAAAAATATTTTATA-TA
1 TTTT-T-AAAATATTTAAAATTA
8021040 TTTTTAA
1 TTTTTAA
8021047 TATTAAAAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
20 2 0.05
21 14 0.36
22 14 0.36
23 9 0.23
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (21 bp):
TTTTTAAAATATTTAAAATTA
Found at i:8028051 original size:12 final size:13
Alignment explanation
Indices: 8028032--8028063 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8028022 TTTTTGTGTG
8028032 TTTT-TTTATTTA
1 TTTTATTTATTTA
8028044 -TTTATTTATTTA
1 TTTTATTTATTTA
8028056 TTTTATTT
1 TTTTATTT
8028064 TTATAATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.17
12 8 0.44
13 7 0.39
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTATTTATTTA
Found at i:8030071 original size:12 final size:12
Alignment explanation
Indices: 8030056--8030080 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8030046 AAGTTTAAAG
8030056 TTGATATTAATA
1 TTGATATTAATA
8030068 TTGATATTAATA
1 TTGATATTAATA
8030080 T
1 T
8030081 ATATTTGGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TTGATATTAATA
Found at i:8030543 original size:15 final size:16
Alignment explanation
Indices: 8030508--8030552 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
8030498 GGATGCATGC
*
8030508 ATTTAATTAAAAATAT
1 ATTTAATAAAAAATAT
*
8030524 TTTTAATAAAAAATA-
1 ATTTAATAAAAAATAT
8030539 ATTTACATAAAAAA
1 ATTTA-ATAAAAAA
8030553 GAAATAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTTAATAAAAAATAT
Found at i:8031490 original size:13 final size:13
Alignment explanation
Indices: 8031474--8031501 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8031464 AATGATACAT
8031474 AAAAAATAAAAAA
1 AAAAAATAAAAAA
8031487 AAAAAATAAAAAA
1 AAAAAATAAAAAA
8031500 AA
1 AA
8031502 GATCAGGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (13 bp):
AAAAAATAAAAAA
Found at i:8032889 original size:10 final size:10
Alignment explanation
Indices: 8032874--8032905 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
8032864 ATCTATTTGC
8032874 TAAATATATA
1 TAAATATATA
8032884 TAAATATATA
1 TAAATATATA
*
8032894 TATATATATA
1 TAAATATATA
8032904 TA
1 TA
8032906 GGGTACGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TAAATATATA
Found at i:8036055 original size:15 final size:15
Alignment explanation
Indices: 8036037--8036067 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8036027 TTTTTTTTTA
*
8036037 GGATTTTCTTTTTGG
1 GGATCTTCTTTTTGG
8036052 GGATCTTCTTTTTGG
1 GGATCTTCTTTTTGG
8036067 G
1 G
8036068 TTACCTCTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.10, G:0.29, T:0.55
Consensus pattern (15 bp):
GGATCTTCTTTTTGG
Found at i:8042026 original size:11 final size:11
Alignment explanation
Indices: 8041995--8042027 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8041985 ATGGGACGTG
8041995 AATTCCATGCA
1 AATTCCATGCA
*
8042006 AGTT-CATGCA
1 AATTCCATGCA
8042016 AATTCCATGCA
1 AATTCCATGCA
8042027 A
1 A
8042028 GATTAGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.27
Consensus pattern (11 bp):
AATTCCATGCA
Found at i:8045525 original size:23 final size:25
Alignment explanation
Indices: 8045473--8045534 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 25
8045463 TTACTCAATA
*
8045473 AAAAT-AAATAAATAATAAAAGTCATT
1 AAAATAAAATAAATAATAAAA--CATG
8045499 AAAATAAAATAAATAA-AAAA-ATG
1 AAAATAAAATAAATAATAAAACATG
8045522 AAAATAAAATAAA
1 AAAATAAAATAAA
8045535 AATCTTTAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 15 0.44
26 9 0.26
27 10 0.29
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (25 bp):
AAAATAAAATAAATAATAAAACATG
Found at i:8045563 original size:43 final size:41
Alignment explanation
Indices: 8045469--8045582 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 41
8045459 TAAATTACTC
*
8045469 AATAAAAAT-AAATAAATAATAAAAGTCATTAAAATAAAATA
1 AATAAAAATAAAATAAA-AATAAAAATCATTAAAATAAAATA
*
8045510 AATAAAAAAATGAAAAT-AAAATAAAAATCTTTAAAATATAAAATA
1 AAT--AAAAAT-AAAATAAAAATAAAAATCATT-AAA-ATAAAATA
8045555 AATAAAAATAAAATCAAAAAATAAAAAT
1 AATAAAAATAAAAT--AAAAATAAAAAT
8045583 AAAATGGAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 14
0.79 0.03 0.18
Matches are distributed among these distances:
41 3 0.05
42 5 0.08
43 23 0.37
44 5 0.08
45 26 0.42
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.23
Consensus pattern (41 bp):
AATAAAAATAAAATAAAAATAAAAATCATTAAAATAAAATA
Found at i:8046471 original size:10 final size:11
Alignment explanation
Indices: 8046458--8046524 Score: 65
Period size: 10 Copynumber: 6.5 Consensus size: 11
8046448 TAATAATGTA
8046458 ATAATTA-AAT
1 ATAATTATAAT
8046468 ATAA-TATAAT
1 ATAATTATAAT
*
8046478 ATAA-TATACT
1 ATAATTATAAT
*
8046488 AT-ACTATAAT
1 ATAATTATAAT
8046498 AATAA-TATAAT
1 -ATAATTATAAT
8046509 ATAA-TATAAT
1 ATAATTATAAT
8046519 ATAATT
1 ATAATT
8046525 TACTGTACTA
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
9 3 0.06
10 37 0.74
11 9 0.18
12 1 0.02
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (11 bp):
ATAATTATAAT
Found at i:8046473 original size:5 final size:5
Alignment explanation
Indices: 8046465--8046523 Score: 91
Period size: 5 Copynumber: 11.6 Consensus size: 5
8046455 GTAATAATTA
* *
8046465 AATAT AATAT AATAT AATAT ACTAT ACTAT AATAAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AAT-AT AATAT AATAT AATAT
8046516 AATAT AAT
1 AATAT AAT
8046524 TTACTGTACT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
5 46 0.90
6 5 0.10
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:8046490 original size:41 final size:39
Alignment explanation
Indices: 8046421--8046542 Score: 120
Period size: 41 Copynumber: 2.9 Consensus size: 39
8046411 GGAAAGAAAA
* *
8046421 AAATATTAAGATAATAATAATAGACTATA-ATAATGTAATAATT
1 AAATA-TAATATAAT-ATAATATACTATACATAA--TAATAA-T
8046464 AAATATAATATAATATAATATACTATACTATAATAATAAT
1 AAATATAATATAATATAATATACTATAC-ATAATAATAAT
* * *
8046504 ATAATATAATATAATATAATTTACTGTACTATAGTAATA
1 A-AATATAATATAATATAATATACTATAC-ATAATAATA
8046543 TAATACTAGT
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
40 2 0.03
41 52 0.73
42 8 0.11
43 9 0.13
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (39 bp):
AAATATAATATAATATAATATACTATACATAATAATAAT
Found at i:8046496 original size:46 final size:43
Alignment explanation
Indices: 8046444--8046547 Score: 131
Period size: 41 Copynumber: 2.4 Consensus size: 43
8046434 ATAATAATAG
8046444 ACTATAATAATGTAATAATTAAATATAATATAATATAATATACTAT
1 ACTATAATAAT-TAATAA-T-AATATAATATAATATAATATACTAT
* *
8046490 ACTATAATAA-TAAT-ATAATATAATATAATATAATTTACTGT
1 ACTATAATAATTAATAATAATATAATATAATATAATATACTAT
*
8046531 ACTATAGTAATATAATA
1 ACTATAATAAT-TAATA
8046548 CTAGTCACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
41 32 0.62
42 1 0.02
43 5 0.10
44 4 0.08
46 10 0.19
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (43 bp):
ACTATAATAATTAATAATAATATAATATAATATAATATACTAT
Found at i:8046577 original size:15 final size:15
Alignment explanation
Indices: 8046559--8046600 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
8046549 TAGTCACAAT
*
8046559 AATAAAATAATAACA
1 AATAAAAAAATAACA
*
8046574 AATAATAAAAAT-ACT
1 AATAA-AAAAATAACA
8046589 AATAAAAAAATA
1 AATAAAAAAATA
8046601 GTAATAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 6 0.26
15 12 0.52
16 5 0.22
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (15 bp):
AATAAAAAAATAACA
Found at i:8046578 original size:10 final size:9
Alignment explanation
Indices: 8046556--8046614 Score: 50
Period size: 8 Copynumber: 6.3 Consensus size: 9
8046546 TACTAGTCAC
8046556 AATAAT-AA
1 AATAATAAA
8046564 AATAATAACA
1 AATAATAA-A
8046574 AATAATAAAA
1 AATAAT-AAA
8046584 ATACTAATAAA
1 A-A-TAATAAA
**
8046595 AA-AATAGT
1 AATAATAAA
8046603 AATAATAAA
1 AATAATAAA
8046612 AAT
1 AAT
8046615 TAACCCAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
8 12 0.29
9 8 0.20
10 10 0.24
11 7 0.17
12 4 0.10
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (9 bp):
AATAATAAA
Found at i:8046593 original size:30 final size:29
Alignment explanation
Indices: 8046558--8046614 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
8046548 CTAGTCACAA
*
8046558 TAATAAAATAATAACAAATAATAAAAATAC
1 TAATAAAAAAAT-ACAAATAATAAAAATAC
**
8046588 TAATAAAAAAATAGTAATAATAAAAAT
1 TAATAAAAAAATACAAATAATAAAAAT
8046615 TAACCCAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (29 bp):
TAATAAAAAAATACAAATAATAAAAATAC
Found at i:8047079 original size:55 final size:55
Alignment explanation
Indices: 8046981--8047289 Score: 200
Period size: 55 Copynumber: 5.6 Consensus size: 55
8046971 GAATGACCAA
* * *
8046981 GATTGAACCACAAATCTTG-AAAATGATCTGGAT-AGAG-TCAAGATCGAAAGATCGG
1 GATTGAACTACAAGTC-TGAAAAATGATTTGGATCA-AGCT-AAGATCGAAAGATCGG
* *
8047036 GATTGAA-TCACAAGTCTGAAAAATGATTTGGATCAAGCTAAGATCAAAAGATGGG
1 GATTGAACT-ACAAGTCTGAAAAATGATTTGGATCAAGCTAAGATCGAAAGATCGG
* * ** * * * * * *
8047091 GATTGAACTACAAGTCTAAAAAACTAACCTAGA-CTAAGTTGAGGT-TAAACGATCGA
1 GATTGAACTACAAGTCTGAAAAA-TGATTTGGATC-AAGCTAAGATCGAAA-GATCGG
* * * * ** * * *
8047147 GATTGAACTACAAGTTTGGAAAACGATATGGATTGAGCTAAGATCGAATGACCAG
1 GATTGAACTACAAGTCTGAAAAATGATTTGGATCAAGCTAAGATCGAAAGATCGG
* * ** * * *
8047202 GATTGAA-TCACAACTTTGAAAAATGATTTGGATGGAGCTGAGATCGAAAAATCGA
1 GATTGAACT-ACAAGTCTGAAAAATGATTTGGATCAAGCTAAGATCGAAAGATCGG
**
8047257 GATTGAACTGTAAGTCTGAAAAATGATTTGGAT
1 GATTGAACTACAAGTCTGAAAAATGATTTGGAT
8047290 GAAGTCGAGA
Statistics
Matches: 193, Mismatches: 49, Indels: 24
0.73 0.18 0.09
Matches are distributed among these distances:
54 3 0.02
55 148 0.77
56 42 0.22
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (55 bp):
GATTGAACTACAAGTCTGAAAAATGATTTGGATCAAGCTAAGATCGAAAGATCGG
Found at i:8047152 original size:166 final size:166
Alignment explanation
Indices: 8046980--8047279 Score: 390
Period size: 166 Copynumber: 1.8 Consensus size: 166
8046970 CGAATGACCA
* * * *
8046980 AGATTGAACCACAAATCTT-GAAAATGATCTGGATAGAG-TCAAGATCGAAAGATCGGGATTGAA
1 AGATTGAACCACAAAT-TTGGAAAACGATATGGATAGAGCT-AAGATCGAAAGACCAGGATTGAA
* * *
8047043 TCACAAGTCTGAAAAATGATTTGGATCAAGCTAAGATC-AAAAGATGGGGATTGAACTACAAGTC
64 TCACAACTCTGAAAAATGATTTGGATCAAGCTAAGATCGAAAA-ATCGAGATTGAACTACAAGTC
8047107 TAAAAAACTAACCTAGACTAAGTTGAGGTTAAACGATCG
128 TAAAAAACTAACCTAGACTAAGTTGAGGTTAAACGATCG
* * * *
8047146 AGATTGAACTACAAGTTTGGAAAACGATATGGATTGAGCTAAGATCGAATGACCAGGATTGAATC
1 AGATTGAACCACAAATTTGGAAAACGATATGGATAGAGCTAAGATCGAAAGACCAGGATTGAATC
* ** * ** *
8047211 ACAACTTTGAAAAATGATTTGGATGGAGCTGAGATCGAAAAATCGAGATTGAACTGTAAGTCTGA
66 ACAACTCTGAAAAATGATTTGGATCAAGCTAAGATCGAAAAATCGAGATTGAACTACAAGTCTAA
8047276 AAAA
131 AAAA
8047280 TGATTTGGAT
Statistics
Matches: 113, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
165 2 0.02
166 106 0.94
167 5 0.04
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.24
Consensus pattern (166 bp):
AGATTGAACCACAAATTTGGAAAACGATATGGATAGAGCTAAGATCGAAAGACCAGGATTGAATC
ACAACTCTGAAAAATGATTTGGATCAAGCTAAGATCGAAAAATCGAGATTGAACTACAAGTCTAA
AAAACTAACCTAGACTAAGTTGAGGTTAAACGATCG
Found at i:8058621 original size:5 final size:5
Alignment explanation
Indices: 8058611--8058700 Score: 89
Period size: 5 Copynumber: 18.0 Consensus size: 5
8058601 TAAAAGTCAG
* **
8058611 TAAAA TAAAA T-AAA T-AAA TAAAC TCAAAA TAAAA TAAAA -AACT TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA T-AAAA TAAAA TAAAA TAAAA TAAAA
8058659 TAGAAA -ATAAA TAAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TA-AAA TA-AAA T-AAAA TAAAA TAAAA TAAAA TAAAA TAAAA
8058701 AGAAAACCTG
Statistics
Matches: 72, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
4 10 0.14
5 50 0.69
6 11 0.15
7 1 0.01
ACGTcount: A:0.76, C:0.03, G:0.01, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:8058680 original size:15 final size:15
Alignment explanation
Indices: 8058586--8058699 Score: 78
Period size: 15 Copynumber: 7.5 Consensus size: 15
8058576 TTGCTTAGTA
8058586 AAAATAAATAAATAAT
1 AAAATAAATAAA-AAT
* *
8058602 AAAAGTCAGT-AAAAT
1 AAAA-TAAATAAAAAT
8058617 AAAATAAAT--AAAT
1 AAAATAAATAAAAAT
*
8058630 AAACTCAAA-ATAAAAT
1 AAAAT-AAATA-AAAAT
* *
8058646 AAAA-AACTTAAAATAG
1 AAAATAA-ATAAAA-AT
8058662 AAAATAAATAAAAAT
1 AAAATAAATAAAAAT
8058677 AAAATAAA-ATAAAAT
1 AAAATAAATA-AAAAT
8058692 AAAATAAA
1 AAAATAAA
8058700 AAGAAAACCT
Statistics
Matches: 78, Mismatches: 10, Indels: 21
0.72 0.09 0.19
Matches are distributed among these distances:
13 8 0.10
14 9 0.12
15 32 0.41
16 24 0.31
17 5 0.06
ACGTcount: A:0.74, C:0.04, G:0.03, T:0.20
Consensus pattern (15 bp):
AAAATAAATAAAAAT
Found at i:8058705 original size:41 final size:41
Alignment explanation
Indices: 8058622--8058706 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 41
8058612 AAAATAAAAT
* **
8058622 AAATAAATAAACTCAAAATAAAATAAAAAACTTAAAATAGA
1 AAATAAATAAAATCAAAATAAAATAAAAAAAATAAAATAGA
8058663 AAATAAATAAAAAT-AAAATAAAATAAAATAAAATAAAA-AGA
1 AAATAAAT-AAAATCAAAATAAAATAAAA-AAAATAAAATAGA
8058704 AAA
1 AAA
8058707 CCTGCGATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
41 28 0.72
42 11 0.28
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (41 bp):
AAATAAATAAAATCAAAATAAAATAAAAAAAATAAAATAGA
Found at i:8059556 original size:3 final size:3
Alignment explanation
Indices: 8059543--8059633 Score: 66
Period size: 3 Copynumber: 31.3 Consensus size: 3
8059533 AAATTTAAAA
* * *
8059543 AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT -AC AAT -AT AAT AA- ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** *
8059588 ATAT TAT ACC AAT AAT AAT -AT AAT AAAT AAT GAT AAT AAT -AT AAT
1 A-AT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
8059633 A
1 A
8059634 TGATATAATC
Statistics
Matches: 67, Mismatches: 14, Indels: 14
0.71 0.15 0.15
Matches are distributed among these distances:
2 8 0.12
3 55 0.82
4 4 0.06
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8059703 original size:18 final size:18
Alignment explanation
Indices: 8059692--8059727 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8059682 ATAATACTAG
8059692 TAAC-AATAATAAAATAA
1 TAACAAATAATAAAATAA
8059709 TAACAAATAATAAAA-AA
1 TAACAAATAATAAAATAA
8059726 TA
1 TA
8059728 CTAATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (18 bp):
TAACAAATAATAAAATAA
Found at i:8073318 original size:21 final size:19
Alignment explanation
Indices: 8073270--8073319 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 19
8073260 GTGCTTAATA
*
8073270 TACATATGTTTATGTATGCT
1 TACATATG-TTATATATGCT
8073290 TA-AT-TGTTATATATGCT
1 TACATATGTTATATATGCT
8073307 CTAACATATGTTA
1 -T-ACATATGTTA
8073320 GTTGAGTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 10 0.40
18 3 0.12
19 3 0.12
20 4 0.16
21 5 0.20
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.48
Consensus pattern (19 bp):
TACATATGTTATATATGCT
Found at i:8078919 original size:11 final size:11
Alignment explanation
Indices: 8078905--8078949 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
8078895 GAAGAAGAGG
8078905 AAAGAGAAAAA
1 AAAGAGAAAAA
8078916 AAAGAGAAAAA
1 AAAGAGAAAAA
8078927 AAA-AGAAAACA
1 AAAGAGAAAA-A
8078938 AAAGA-AAAAA
1 AAAGAGAAAAA
8078948 AA
1 AA
8078950 CACCCACAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
10 9 0.28
11 22 0.69
12 1 0.03
ACGTcount: A:0.84, C:0.02, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAGAGAAAAA
Found at i:8078925 original size:10 final size:10
Alignment explanation
Indices: 8078905--8078948 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
8078895 GAAGAAGAGG
8078905 AAAGAGAAAAA
1 AAAGAG-AAAA
8078916 AAAGAGAAAA
1 AAAGAGAAAA
*
8078926 AAAAAGAAAA
1 AAAGAGAAAA
8078936 CAAA-AGAAAA
1 -AAAGAGAAAA
8078946 AAA
1 AAA
8078949 ACACCCACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 3 0.10
10 19 0.61
11 9 0.29
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAGAGAAAA
Found at i:8080309 original size:14 final size:14
Alignment explanation
Indices: 8080290--8080319 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8080280 TCTGGCATCT
8080290 TTATGACATTTTAA
1 TTATGACATTTTAA
8080304 TTATGACATTTTAA
1 TTATGACATTTTAA
8080318 TT
1 TT
8080320 TTTTAACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (14 bp):
TTATGACATTTTAA
Found at i:8082283 original size:189 final size:189
Alignment explanation
Indices: 8082046--8082441 Score: 467
Period size: 189 Copynumber: 2.1 Consensus size: 189
8082036 TTGAATGGGG
* * * * **
8082046 TTATTCAATGCATTTGT-AGCCAAAAATACCTTGAATAATCCCTTGAAAAAACTAAAAAATGCTA
1 TTATTCAAGGCATTT-TCTGCCAAAAATACCTCGAATAATCCCTTGAAAAAACCAAAAAACACTA
* ** ** *
8082110 GAAGAAA-GGATCAAACCTATGACCTTATAGTTAACAACTGTATCTAT-TAACTGATTGAGCTAT
65 -AAAAAAGGGATCAAACCTACAACCTTATAGTTAACAACTGTATCT-TCTAACCAATTGAGCTAC
* * * * *
8082173 TCTAGTATTTTTATAATTAAAAGGTATTATTTAGATTAAGAATAATCCATTCTGGGA-TGAGA
128 TCCAATATTTTTATAATTAAAAGGTATTATTTAGACTAAGAATAATCCACTCTGGGACAG-GA
* * *
8082235 TTATTTAAGGTATTTTCTGCCAAAAATACCTCGAATAATCCCTTGAAAAACCCAAAAAACACTAA
1 TTATTCAAGGCATTTTCTGCCAAAAATACCTCGAATAATCCCTTGAAAAAACCAAAAAACACTAA
* * * * *
8082300 AAAAAGGGATCGAGCCTACAACCTTATAGTTAACAATTGTATGTTCTAACCAATTGAGTTACTCC
66 AAAAAGGGATCAAACCTACAACCTTATAGTTAACAACTGTATCTTCTAACCAATTGAGCTACTCC
* * * *
8082365 AATGTTTTTATAATTGAAAGGTATTATTTAGACTAAGAATGATCCCCTCTGGGACAGGA
131 AATATTTTTATAATTAAAAGGTATTATTTAGACTAAGAATAATCCACTCTGGGACAGGA
8082424 TTATTCAAGGCATTTTCT
1 TTATTCAAGGCATTTTCT
8082442 CTGGGACAGG
Statistics
Matches: 172, Mismatches: 31, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
188 7 0.04
189 164 0.95
190 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.33
Consensus pattern (189 bp):
TTATTCAAGGCATTTTCTGCCAAAAATACCTCGAATAATCCCTTGAAAAAACCAAAAAACACTAA
AAAAAGGGATCAAACCTACAACCTTATAGTTAACAACTGTATCTTCTAACCAATTGAGCTACTCC
AATATTTTTATAATTAAAAGGTATTATTTAGACTAAGAATAATCCACTCTGGGACAGGA
Found at i:8082453 original size:29 final size:29
Alignment explanation
Indices: 8082411--8082470 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
8082401 GAATGATCCC
8082411 CTCTGGGACAGGATTATTCAAGGCATTTT
1 CTCTGGGACAGGATTATTCAAGGCATTTT
8082440 CTCTGGGACAGGATTATTCAAGGCATTTT
1 CTCTGGGACAGGATTATTCAAGGCATTTT
8082469 CT
1 CT
8082471 ACCAAAAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.35
Consensus pattern (29 bp):
CTCTGGGACAGGATTATTCAAGGCATTTT
Found at i:8082608 original size:217 final size:218
Alignment explanation
Indices: 8082233--8082656 Score: 537
Period size: 217 Copynumber: 1.9 Consensus size: 218
8082223 TCTGGGATGA
* * * *
8082233 GATTATTTAAGGTATTTTCTGCCAAAAATACCTCGAATAATCCCTTGAAAAACCCAAAAAACACT
1 GATTATTCAAGGCATTTTCTACCAAAAATACCTCGAATAATCCCTTAAAAAACCCAAAAAACACT
* * * * * * *
8082298 AAAAAAAGGGATCGAGCCTACAACCTTATAGTTAACAATTGTATGTTCTAACCAATTGAGTTACT
66 AAAAAAAGGGATCAAACCTACAACCTTACAGTTAACAATTGTATGCTATAACCAATTAAGCTACT
* * * *
8082363 CCAATGTTTTTATAATTGAAAGGTATTATTTAGACTAAGAATGATCCCCTCTGGGACAGGATTAT
131 CCAATGTTTTTATAATTAAAAGGTATTATTTAGACTAAGAATAATCCCCTATGAGACAGGATTAT
*
8082428 TCAAGGCATTTTCTCTGGGACAG
196 TCAAGACATTTTCTCTGGGACAG
* * *
8082451 GATTATTCAAGGCATTTTCTACCAAAAATGCCTTC-AATAATCCCTTAAAAAATCTAAAAAA-AC
1 GATTATTCAAGGCATTTTCTACCAAAAATACC-TCGAATAATCCCTTAAAAAACCCAAAAAACAC
** * * * * * *
8082514 TAAAATTAGGGATTAAACTTACAACCTTACGGTTAATAATTGTATGCTATAATCGATTAAGCTAC
65 TAAAAAAAGGGATCAAACCTACAACCTTACAGTTAACAATTGTATGCTATAACCAATTAAGCTAC
* * **
8082579 TCCAGTGTTTTTATAATTAAAATGTATTATTTAGACTAAGAATAATCCCCTATGAGATGGGATTA
130 TCCAATGTTTTTATAATTAAAAGGTATTATTTAGACTAAGAATAATCCCCTATGAGACAGGATTA
*
8082644 TTCATGACATTTT
195 TTCAAGACATTTT
8082657 TTGTCAAAAA
Statistics
Matches: 173, Mismatches: 32, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
217 120 0.69
218 51 0.29
219 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.33
Consensus pattern (218 bp):
GATTATTCAAGGCATTTTCTACCAAAAATACCTCGAATAATCCCTTAAAAAACCCAAAAAACACT
AAAAAAAGGGATCAAACCTACAACCTTACAGTTAACAATTGTATGCTATAACCAATTAAGCTACT
CCAATGTTTTTATAATTAAAAGGTATTATTTAGACTAAGAATAATCCCCTATGAGACAGGATTAT
TCAAGACATTTTCTCTGGGACAG
Found at i:8091871 original size:13 final size:13
Alignment explanation
Indices: 8091853--8091880 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8091843 AGACTTTTAA
8091853 TAAATAAATAATT
1 TAAATAAATAATT
8091866 TAAATAAATAATT
1 TAAATAAATAATT
8091879 TA
1 TA
8091881 CCAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TAAATAAATAATT
Found at i:8095095 original size:21 final size:21
Alignment explanation
Indices: 8095027--8095095 Score: 52
Period size: 21 Copynumber: 3.1 Consensus size: 21
8095017 TGAATAGACC
*
8095027 ATAAAATTAAAAATA-ATTATG
1 ATAAAATTAAAATTAGA-TATG
* *
8095048 ATAATAATATTAAATGCTAGA-ACG
1 ATAA-AAT-TAAAAT--TAGATATG
8095072 ATAAAATTAAAATTAGATATG
1 ATAAAATTAAAATTAGATATG
8095093 ATA
1 ATA
8095096 TGAGATAGGC
Statistics
Matches: 37, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
20 4 0.11
21 9 0.24
22 8 0.22
23 7 0.19
24 6 0.16
25 2 0.05
26 1 0.03
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.32
Consensus pattern (21 bp):
ATAAAATTAAAATTAGATATG
Found at i:8096818 original size:7 final size:6
Alignment explanation
Indices: 8096795--8096869 Score: 57
Period size: 6 Copynumber: 11.7 Consensus size: 6
8096785 AAATTTCTAG
8096795 AAAATA ATAAA-A AAAATTA AAAATA AAATGAGTA AATAA-A ATAAAT-
1 AAAATA A-AAATA AAAA-TA AAAATA AAA--A-TA AA-AATA A-AAATA
8096841 AAAATA AAAATA AAAATA AAATATA AAAA
1 AAAATA AAAATA AAAATA AAA-ATA AAAA
8096870 AACCTGTAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 22
0.73 0.00 0.28
Matches are distributed among these distances:
5 7 0.12
6 29 0.50
7 15 0.26
8 2 0.03
9 4 0.07
10 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:8096836 original size:5 final size:5
Alignment explanation
Indices: 8096800--8096863 Score: 51
Period size: 5 Copynumber: 11.8 Consensus size: 5
8096790 TCTAGAAAAT
8096800 AATAA AA-AA AATTAAA AATAA AATGAGTA AATAA AAT-A AATAA AATAAA
1 AATAA AATAA AA-T-AA AATAA AAT-A--A AATAA AATAA AATAA AAT-AA
8096849 AATAAA AATAA AATA
1 AAT-AA AATAA AATA
8096864 TAAAAAAACC
Statistics
Matches: 51, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
4 8 0.16
5 21 0.41
6 13 0.25
7 5 0.10
8 4 0.08
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:8096868 original size:13 final size:13
Alignment explanation
Indices: 8096803--8096869 Score: 63
Period size: 13 Copynumber: 5.3 Consensus size: 13
8096793 AGAAAATAAT
8096803 AAAA-AAAAT-TA
1 AAAATAAAATATA
8096814 AAAATAAAATGAGT-
1 AAAATAAAAT-A-TA
*
8096828 -AAATAAAATAAA
1 AAAATAAAATATA
8096840 TAAAATAAAA-ATA
1 -AAAATAAAATATA
8096853 AAAATAAAATATA
1 AAAATAAAATATA
8096866 AAAA
1 AAAA
8096870 AACCTGTAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
11 4 0.09
12 15 0.33
13 18 0.39
14 8 0.17
15 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (13 bp):
AAAATAAAATATA
Found at i:8096868 original size:33 final size:34
Alignment explanation
Indices: 8096793--8096855 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
8096783 TAAAATTTCT
8096793 AGAAAAT--AATAAAAAAAATTAAAAATAAAATG
1 AGAAAATAAAATAAAAAAAATTAAAAATAAAATG
* *
8096825 AGTAAATAAAATAAATAAAA-TAAAAATAAAA
1 AGAAAATAAAATAAAAAAAATTAAAAATAAAA
8096856 ATAAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 6 0.22
33 11 0.41
34 10 0.37
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (34 bp):
AGAAAATAAAATAAAAAAAATTAAAAATAAAATG
Found at i:8097756 original size:19 final size:19
Alignment explanation
Indices: 8097714--8097761 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
8097704 CAACAACAAC
**
8097714 AATAATAATAATAATGTGA
1 AATAATAATAATAATGACA
* *
8097733 TATAATACTAATAATGACA
1 AATAATAATAATAATGACA
*
8097752 AATAAAAATA
1 AATAATAATA
8097762 CAATAATATT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.29
Consensus pattern (19 bp):
AATAATAATAATAATGACA
Found at i:8097824 original size:25 final size:25
Alignment explanation
Indices: 8097764--8097825 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
8097754 TAAAAATACA
*
8097764 ATAATATTAATATGATATAATATATT
1 ATAATA-TAATATGATATAATATATG
*
8097790 ATACTATAATATGATATAATA-ATG
1 ATAATATAATATGATATAATATATG
*
8097814 CTAATAGTAATA
1 ATAATA-TAATA
8097826 ATAATATACT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 6 0.19
25 20 0.65
26 5 0.16
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.40
Consensus pattern (25 bp):
ATAATATAATATGATATAATATATG
Found at i:8098175 original size:60 final size:60
Alignment explanation
Indices: 8098103--8098299 Score: 175
Period size: 60 Copynumber: 3.3 Consensus size: 60
8098093 AAGTCGAGAT
* * *
8098103 TGAATGATTGGGATGATGTCACGAGTCTGAGAGTGACTAAGACCAAGTCGAGGTC-ATAAA
1 TGAATGACTGGGATGATGTCACGAGTCTGAGAATGACCAAGACCAAGTCGAGGTCGA-AAA
* * *
8098163 TGAATGACTGGGATGATGTCGCAC-A-TCTGAGAATGACCAAGACTAATTCGAGGTCGAAGA
1 TGAATGACTGGGATGATGT--CACGAGTCTGAGAATGACCAAGACCAAGTCGAGGTCGAAAA
* ** * ** * ** * * *
8098223 TGAATGACTGAGACAATGTCGCGAGTCTGAGAACAACTAAGACTGAGTCAAGTTCGAAGA
1 TGAATGACTGGGATGATGTCACGAGTCTGAGAATGACCAAGACCAAGTCGAGGTCGAAAA
*
8098283 TGAATGACTGAGATGAT
1 TGAATGACTGGGATGAT
8098300 ACCGCGAGTT
Statistics
Matches: 113, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
58 2 0.02
59 1 0.01
60 105 0.93
61 2 0.02
62 3 0.03
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.22
Consensus pattern (60 bp):
TGAATGACTGGGATGATGTCACGAGTCTGAGAATGACCAAGACCAAGTCGAGGTCGAAAA
Found at i:8109153 original size:37 final size:37
Alignment explanation
Indices: 8109107--8109191 Score: 88
Period size: 37 Copynumber: 2.3 Consensus size: 37
8109097 AAAGAAAGAC
*
8109107 AAATGAATAATTAAA-CAAGTATACA-TAATGAAAAGGA
1 AAATAAATAATTAAACCAA-TATA-AGTAATGAAAAGGA
*
8109144 AAATAAATAA-TAAAGCCAATATAAGTAATGAAAGGGA
1 AAATAAATAATTAAA-CCAATATAAGTAATGAAAAGGA
*
8109181 ATA-AAATAATT
1 AAATAAATAATT
8109192 TCAAATTTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
36 11 0.27
37 27 0.66
38 3 0.07
ACGTcount: A:0.60, C:0.05, G:0.13, T:0.22
Consensus pattern (37 bp):
AAATAAATAATTAAACCAATATAAGTAATGAAAAGGA
Found at i:8109190 original size:18 final size:19
Alignment explanation
Indices: 8109126--8109190 Score: 62
Period size: 18 Copynumber: 3.5 Consensus size: 19
8109116 ATTAAACAAG
* *
8109126 TATACATAATGAAAAGGAA
1 TATAAATAATGAAAGGGAA
* **
8109145 AATAAATAAT-AAAGCCAA
1 TATAAATAATGAAAGGGAA
*
8109163 TATAAGTAATGAAAGGGAA
1 TATAAATAATGAAAGGGAA
8109182 TA-AAATAAT
1 TATAAATAAT
8109191 TTCAAATTTA
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
18 19 0.54
19 16 0.46
ACGTcount: A:0.60, C:0.05, G:0.14, T:0.22
Consensus pattern (19 bp):
TATAAATAATGAAAGGGAA
Found at i:8110096 original size:9 final size:9
Alignment explanation
Indices: 8110082--8110161 Score: 54
Period size: 9 Copynumber: 8.2 Consensus size: 9
8110072 AAATTTCTAT
*
8110082 AAAAAATCA
1 AAAAAATAA
8110091 AAAAAATAA
1 AAAAAATAA
8110100 TAAAAAATTAAA
1 -AAAAAA-T-AA
8110112 AATAAAATGAGTA
1 AA-AAAAT-A--A
8110125 AAAAAATAA
1 AAAAAATAA
*
8110134 ATAAAATAA
1 AAAAAATAA
*
8110143 AATAAA-AA
1 AAAAAATAA
*
8110151 TAAAAATAA
1 AAAAAATAA
8110160 AA
1 AA
8110162 TGAAAAAAGA
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
8 6 0.11
9 24 0.43
10 6 0.11
11 6 0.11
12 11 0.20
13 3 0.05
ACGTcount: A:0.79, C:0.01, G:0.03, T:0.17
Consensus pattern (9 bp):
AAAAAATAA
Found at i:8110115 original size:44 final size:43
Alignment explanation
Indices: 8110067--8110164 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 43
8110057 AAAATAGGTG
** *
8110067 AAATAAAATTTCTATAAAAAATCAAA-AAAATAATAA-AAAATTAA
1 AAATAAAATGACTA-AAAAAAT-AAATAAAATAA-AATAAAAATAA
*
8110111 AAATAAAATGAGTAAAAAAATAAATAAAATAAAATAAAAATAA
1 AAATAAAATGACTAAAAAAATAAATAAAATAAAATAAAAATAA
8110154 AAATAAAATGA
1 AAATAAAATGA
8110165 AAAAAGAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
42 5 0.10
43 32 0.67
44 11 0.23
ACGTcount: A:0.73, C:0.02, G:0.03, T:0.21
Consensus pattern (43 bp):
AAATAAAATGACTAAAAAAATAAATAAAATAAAATAAAAATAA
Found at i:8110143 original size:17 final size:17
Alignment explanation
Indices: 8110084--8110161 Score: 56
Period size: 17 Copynumber: 4.5 Consensus size: 17
8110074 ATTTCTATAA
8110084 AAAATCAAAAAAAT-AAT
1 AAAAT-AAAAAAATAAAT
8110101 AAAA-AATTAAAAATAAA-
1 AAAATAA--AAAAATAAAT
* *
8110118 ATGAGTAAAAAAATAAAT
1 A-AAATAAAAAAATAAAT
*
8110136 AAAATAAAATAA-AAAT
1 AAAATAAAAAAATAAAT
8110152 AAAAATAAAA
1 -AAAATAAAA
8110162 TGAAAAAAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
15 2 0.04
16 4 0.08
17 37 0.76
18 4 0.08
19 2 0.04
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.18
Consensus pattern (17 bp):
AAAATAAAAAAATAAAT
Found at i:8110155 original size:43 final size:43
Alignment explanation
Indices: 8110082--8110164 Score: 125
Period size: 43 Copynumber: 1.9 Consensus size: 43
8110072 AAATTTCTAT
*
8110082 AAAAAATCAAAAAAATAATAAAAAATTAAAAATAAAATGAGTA
1 AAAAAATCAAAAAAATAATAAAAAAATAAAAATAAAATGAGTA
8110125 AAAAAAT-AAATAAAATAA-AATAAAAATAAAAATAAAATGA
1 AAAAAATCAAA-AAAATAATAA-AAAAATAAAAATAAAATGA
8110165 AAAAAGAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
42 5 0.14
43 32 0.86
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.18
Consensus pattern (43 bp):
AAAAAATCAAAAAAATAATAAAAAAATAAAAATAAAATGAGTA
Found at i:8110162 original size:17 final size:17
Alignment explanation
Indices: 8110092--8110168 Score: 68
Period size: 17 Copynumber: 4.3 Consensus size: 17
8110082 AAAAAATCAA
*
8110092 AAAAATAATAAA-AAATT
1 AAAAATAA-AAATAAAAT
*
8110109 AAAAATAAAATGAGTAAAAA
1 AAAAATAAAA--A-TAAAAT
8110129 AATAAAT-AAAATAAAAT
1 AA-AAATAAAAATAAAAT
8110146 AAAAATAAAAATAAAAT
1 AAAAATAAAAATAAAAT
8110163 GAAAAA
1 -AAAAA
8110169 AGAAAAACCT
Statistics
Matches: 50, Mismatches: 3, Indels: 13
0.76 0.05 0.20
Matches are distributed among these distances:
16 6 0.12
17 25 0.50
18 7 0.14
20 8 0.16
21 4 0.08
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (17 bp):
AAAAATAAAAATAAAAT
Found at i:8110167 original size:6 final size:5
Alignment explanation
Indices: 8110084--8110167 Score: 50
Period size: 5 Copynumber: 15.8 Consensus size: 5
8110074 ATTTCTATAA
*
8110084 AAAAT CAAA- AAAAT AATAA- AAAATT AAAAAT AAAAT GAGTAAA- AAAAT
1 AAAAT AAAAT AAAAT AA-AAT AAAA-T -AAAAT AAAAT -A--AAAT AAAAT
8110132 -AAAT AAAAT AAAAT AAAAAT AAAAAT AAAAT GAAAA
1 AAAAT AAAAT AAAAT -AAAAT -AAAAT AAAAT -AAAA
8110168 AAGAAAAACC
Statistics
Matches: 65, Mismatches: 2, Indels: 23
0.72 0.02 0.26
Matches are distributed among these distances:
4 12 0.18
5 26 0.40
6 20 0.31
7 4 0.06
8 3 0.05
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:8110167 original size:12 final size:11
Alignment explanation
Indices: 8110093--8110168 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
8110083 AAAAATCAAA
8110093 AAAATAATAAA-
1 AAAATAA-AAAT
*
8110104 AAATTAAAAAT
1 AAAATAAAAAT
*
8110115 AAAATGAGTAAA-
1 AAAAT-A-AAAAT
8110127 AAAAT--AAAT
1 AAAATAAAAAT
8110136 AAAAT-AAAAT
1 AAAATAAAAAT
8110146 AAAAATAAAAAT
1 -AAAATAAAAAT
8110158 AAAATGAAAAA
1 AAAAT-AAAAA
8110169 AGAAAAACCT
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
8 3 0.06
9 5 0.09
10 7 0.13
11 20 0.37
12 16 0.30
13 3 0.06
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:8110175 original size:6 final size:6
Alignment explanation
Indices: 8110092--8110161 Score: 58
Period size: 6 Copynumber: 11.7 Consensus size: 6
8110082 AAAAAATCAA
* *
8110092 AAAAAT AATAA- AAAATT AAAAAT AAAATGAGT AAAAA- AATAAAT -AAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA--A-T AAAAAT AA-AAAT AAAAAT
8110141 -AAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAA
8110162 TGAAAAAAGA
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
5 14 0.26
6 32 0.60
7 1 0.02
8 1 0.02
9 5 0.09
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:8111135 original size:5 final size:5
Alignment explanation
Indices: 8111118--8111185 Score: 50
Period size: 5 Copynumber: 13.2 Consensus size: 5
8111108 TAAAAATACA
* * * *
8111118 ATAAT ATTAAT ATGAT ATAAT ATATT ATACT ATAAT ATGAT AT-A- ATAAT
1 ATAAT A-TAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
8111167 ACTAAT AGTAAT AATAAT A
1 A-TAAT A-TAAT -ATAAT A
8111186 CACTATTATA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
3 2 0.04
4 2 0.04
5 28 0.55
6 18 0.35
7 1 0.02
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:8111204 original size:3 final size:3
Alignment explanation
Indices: 8111026--8111185 Score: 129
Period size: 3 Copynumber: 55.3 Consensus size: 3
8111016 AAAAAAAGTA
8111026 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
8111074 AAT AAT AAT -GT GAT -AT AAT ACT AAT AAT GAAA AAT AAA AAT -AC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
* * * * *
8111117 AAT AAT ATT AAT -AT GAT -AT AAT ATAT TAT ACT -AT AAT -AT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* *
8111159 -AT AAT AAT ACT AAT AGT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8111186 CACTATTATA
Statistics
Matches: 127, Mismatches: 20, Indels: 20
0.76 0.12 0.12
Matches are distributed among these distances:
2 13 0.10
3 110 0.87
4 4 0.03
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:8115069 original size:79 final size:79
Alignment explanation
Indices: 8114867--8115160 Score: 216
Period size: 79 Copynumber: 3.7 Consensus size: 79
8114857 AAGAAATGGC
* * * * * ** * *
8114867 TTTGTGATAGCCAATATGTTTTAACACAGTAAAAATGTGACGTATTGAA-GCACATTGAGTGTAT
1 TTTGTGTTAGCCCATATGTCTTAACGCAATAAAAATGTGACACACT-AAGGCATATTGAGTGTAT
*** *
8114931 CAATAGAAAATAAGG
65 TGGTAGAAAATAGGG
* * * * * ** *
8114946 TCTGTGTTAG-TCATATGCCTTAACGTAATAAAGATGTGGTACACTAAGACATATTGAGTGTATT
1 TTTGTGTTAGCCCATATGTCTTAACGCAATAAAAATGTGACACACTAAGGCATATTGAGTGTATT
*
8115010 GGTAGAAAATTGGG
66 GGTAGAAAATAGGG
* * * ** *
8115024 TTTGTGTTAGCCCATATGTCTTAATGCAATAAAAATGTGACACACTAAGGTA-AGTTAAGCATGT
1 TTTGTGTTAGCCCATATGTCTTAACGCAATAAAAATGTGACACACTAAGGCATA-TTGAGTGTAT
*
8115088 TGGTAGAAAATGGGG
65 TGGTAGAAAATAGGG
* * ** * * * *
8115103 TTTATGTTAGTCCATATGTAGTAACGCAATAAAGATGTGGCGCACTAAGGCGTATTGA
1 TTTGTGTTAGCCCATATGTCTTAACGCAATAAAAATGTGACACACTAAGGCATATTGA
8115161 ACATGTTAGC
Statistics
Matches: 163, Mismatches: 48, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
77 2 0.01
78 55 0.34
79 105 0.64
80 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (79 bp):
TTTGTGTTAGCCCATATGTCTTAACGCAATAAAAATGTGACACACTAAGGCATATTGAGTGTATT
GGTAGAAAATAGGG
Found at i:8115386 original size:55 final size:55
Alignment explanation
Indices: 8115290--8115394 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
8115280 GCCGTATTGA
* * * *
8115290 GTGCACAGGGCATGTTGGGTGTATGGGCGTAGTGCCTTAATGTAATAAGAAAGTG
1 GTGCACAAGGCATGTTGAGTGTATGGGCATAGTGCCTTAATGCAATAAGAAAGTG
*
8115345 GTGCACAAGGCATGTTGAGTGTATTGGCATAAGAT-CC-TAATGCAATAAGA
1 GTGCACAAGGCATGTTGAGTGTATGGGCAT-AG-TGCCTTAATGCAATAAGA
8115395 TGGCATGTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
55 38 0.88
56 4 0.09
57 1 0.02
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.27
Consensus pattern (55 bp):
GTGCACAAGGCATGTTGAGTGTATGGGCATAGTGCCTTAATGCAATAAGAAAGTG
Found at i:8116193 original size:18 final size:19
Alignment explanation
Indices: 8116151--8116193 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
8116141 AGCCAAATAT
* *
8116151 GTAATTTGAAAGTATACAA
1 GTAATTAGAAAGTAAACAA
8116170 GT-ATTAGAAAGTAAACAA
1 GTAATTAGAAAGTAAACAA
8116188 -TAATTA
1 GTAATTA
8116194 AAGATGCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 1 0.05
18 18 0.86
19 2 0.10
ACGTcount: A:0.51, C:0.05, G:0.14, T:0.30
Consensus pattern (19 bp):
GTAATTAGAAAGTAAACAA
Found at i:8122708 original size:2 final size:2
Alignment explanation
Indices: 8122701--8122729 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8122691 TACAAAGGTT
8122701 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
8122730 GCTGAAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8124094 original size:1 final size:1
Alignment explanation
Indices: 8124090--8124119 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
8124080 TTTTTTTTTT
8124090 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
8124120 AACAAGATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:8133373 original size:49 final size:49
Alignment explanation
Indices: 8133301--8133398 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
8133291 AGACAAAAGT
* *
8133301 AAGACTCTAATATATCTCGAGGATTAGAAAATAAAACATTAATCTCAGC
1 AAGACTCTAATAAACCTCGAGGATTAGAAAATAAAACATTAATCTCAGC
*
8133350 AAGACTCTAATAAACCTCTAGGATTAGAAAATAAAACATTAATCTCAGC
1 AAGACTCTAATAAACCTCGAGGATTAGAAAATAAAACATTAATCTCAGC
8133399 TCAAAAAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (49 bp):
AAGACTCTAATAAACCTCGAGGATTAGAAAATAAAACATTAATCTCAGC
Found at i:8135078 original size:3 final size:3
Alignment explanation
Indices: 8135070--8135118 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
8135060 AAGTAATTAA
*
8135070 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8135118 A
1 A
8135119 GTTATTATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8138667 original size:22 final size:22
Alignment explanation
Indices: 8138641--8138683 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
8138631 TGTATATTTA
*
8138641 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
8138663 TATTTGTATCCCTAGAATTAA
1 TATTTGTATCCCTAGAATTAA
8138684 AAACAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.44
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:8145263 original size:3 final size:3
Alignment explanation
Indices: 8145255--8145287 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
8145245 TACTCGTAAA
8145255 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8145288 GTAGCGCAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Done.