Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 33 of 130
Found at i:8489027 original size:16 final size:16
Alignment explanation
Indices: 8489006--8489036 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8488996 TGCATAGCAT
8489006 GCATTGAATTTCACAC
1 GCATTGAATTTCACAC
*
8489022 GCATTGCATTTCACA
1 GCATTGAATTTCACA
8489037 TAACATATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (16 bp):
GCATTGAATTTCACAC
Found at i:8489356 original size:42 final size:43
Alignment explanation
Indices: 8489307--8489408 Score: 136
Period size: 42 Copynumber: 2.4 Consensus size: 43
8489297 CAATTTACCT
* *
8489307 TCAAAGTTCTATTGCCTT-TATTTAGATAAGCCATTTATTTTC
1 TCAAAGTTCTGTTGCCTTCTATTTAGAGAAGCCATTTATTTTC
* * *
8489349 TCAAAGTTCTGCT-ACTTCTATTTAGAGGAGCCATTTATTTTC
1 TCAAAGTTCTGTTGCCTTCTATTTAGAGAAGCCATTTATTTTC
8489391 TCAAAAGTTCTGTTGCCT
1 TC-AAAGTTCTGTTGCCT
8489409 CTGTTTATAG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.06
42 35 0.70
43 10 0.20
44 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.44
Consensus pattern (43 bp):
TCAAAGTTCTGTTGCCTTCTATTTAGAGAAGCCATTTATTTTC
Found at i:8489421 original size:43 final size:42
Alignment explanation
Indices: 8489307--8489429 Score: 124
Period size: 42 Copynumber: 3.0 Consensus size: 42
8489297 CAATTTACCT
** * * **
8489307 TCAAAGTTCTATTGCCTTTATTTAGATAAGCCATTTATTTTC
1 TCAAAGTTCTGCTACCTCTATTTAGAGGAGCCATTTATTTTC
*
8489349 TCAAAGTTCTGCTACTTCTATTTAGAGGAGCCATTTATTTTC
1 TCAAAGTTCTGCTACCTCTATTTAGAGGAGCCATTTATTTTC
* * * *
8489391 TCAAAAGTTCTGTTGCCTCTGTTTATAGGAG-C-TTTATTT
1 TC-AAAGTTCTGCTACCTCTATTTAGAGGAGCCATTTATTT
8489430 ATTTTAAAAG
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 7 0.10
42 38 0.56
43 23 0.34
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.46
Consensus pattern (42 bp):
TCAAAGTTCTGCTACCTCTATTTAGAGGAGCCATTTATTTTC
Found at i:8489451 original size:42 final size:43
Alignment explanation
Indices: 8489405--8489684 Score: 289
Period size: 42 Copynumber: 6.5 Consensus size: 43
8489395 AAGTTCTGTT
*
8489405 GCCTCTGTTTATAGGAGCTTTATTTA-TTTTAAAAGTCATTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTTAAAAGTCATTGA
* * *
8489447 GCCTCTGTTTAGAGGAGTTTTATTTATTTTTTCAAAGTCGTTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTA-TTTTTAAAAGTCATTGA
* * *
8489491 GCCTCTGTTTAGATGAGC--AATTTACTTTTCAAAAGTCATTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTA-TTTTTAAAAGTCATTGA
* * * ** *
8489533 GCCTTTGCTTAGAGAAGCTTTATTTA-TTTTAAAAGTTGTTTA
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTTAAAAGTCATTGA
*
8489575 GCCTCTGTTTAAAGGAGCTTTATTTATTTTTCAAAAGTCATTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTT-AAAAGTCATTGA
* * * ** *
8489619 GCCTCTGCTTAGAGGAGCTTTGTTTATTTTACTCAAAGTTGTTAA
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTT--TAAAAGTCATTGA
**
8489664 GCCTCTACTTAGAGGAGCTTT
1 GCCTCTGTTTAGAGGAGCTTT
8489685 GATCAAAATT
Statistics
Matches: 195, Mismatches: 35, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
42 91 0.47
43 4 0.02
44 71 0.36
45 28 0.14
46 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (43 bp):
GCCTCTGTTTAGAGGAGCTTTATTTATTTTTAAAAGTCATTGA
Found at i:8489525 original size:86 final size:86
Alignment explanation
Indices: 8489405--8489669 Score: 322
Period size: 86 Copynumber: 3.1 Consensus size: 86
8489395 AAGTTCTGTT
* * * *
8489405 GCCTCTGTTTATAGGAGCTTTATTTATTTT-AAAAGTCATTGAGCCTCTGTTTAGAGGAGTTTTA
1 GCCTCTGTTTAAAGGAGC-TAATTTATTTTCAAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTA
* *
8489469 TTTATTTTTTCAAAGTCGTTGA
65 TTTATTTTTTCAAAGTTGTTAA
* * * *
8489491 GCCTCTGTTTAGATGAGC-AATTTACTTTTCAAAAGTCATTGAGCCTTTGCTTAGAGAAGCTTTA
1 GCCTCTGTTTAAAGGAGCTAATTTA-TTTTCAAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTA
* *
8489555 TTTA--TTTTAAAAGTTGTTTA
65 TTTATTTTTTCAAAGTTGTTAA
*
8489575 GCCTCTGTTTAAAGGAGCTTTATTTATTTTTCAAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTT
1 GCCTCTGTTTAAAGGAGC-TAATTTA-TTTTCAAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTT
* *
8489640 GTTTATTTTACTCAAAGTTGTTAA
64 ATTTATTTT-TTCAAAGTTGTTAA
8489664 GCCTCT
1 GCCTCT
8489670 ACTTAGAGGA
Statistics
Matches: 152, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
84 34 0.22
85 4 0.03
86 95 0.62
88 2 0.01
89 17 0.11
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.44
Consensus pattern (86 bp):
GCCTCTGTTTAAAGGAGCTAATTTATTTTCAAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTAT
TTATTTTTTCAAAGTTGTTAA
Found at i:8489901 original size:6 final size:6
Alignment explanation
Indices: 8489892--8489935 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
8489882 TTATTTTTCT
*
8489892 TTTTAA TTTTAA TTTTAA -TTTAA TTTTAT TTTTAA TTTT-A TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
8489936 TCATTATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
5 10 0.29
6 25 0.71
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (6 bp):
TTTTAA
Found at i:8489915 original size:17 final size:17
Alignment explanation
Indices: 8489893--8489935 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
8489883 TATTTTTCTT
8489893 TTTAATTTTAATTTTAA
1 TTTAATTTTAATTTTAA
*
8489910 TTTAATTTTATTTTTAA
1 TTTAATTTTAATTTTAA
*
8489927 TTTTATTTT
1 TTTAATTTT
8489936 TCATTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTAATTTTAATTTTAA
Found at i:8489936 original size:6 final size:6
Alignment explanation
Indices: 8489882--8490053 Score: 53
Period size: 6 Copynumber: 27.2 Consensus size: 6
8489872 TAATATGGGC
* * * * * *
8489882 TTATTT TTCTTT TTAATT TTAATT TTA-AT TTAATT TTATTT TTAATT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
* * * * * * *
8489929 TTATTT TTCATTA TTATTA TGATTA TTATTAT TTATCTA TTAATA TT-TTT
1 TTATTT TT-ATTT TTATTT TTATTT TTATT-T TTAT-TT TTATTT TTATTT
* * * *
8489979 TTATTTAT TTATCTA TTATTAT TT-TTT TTAGTTAT CTATTA ATATATT
1 TTA-TT-T TTAT-TT TTATT-T TTATTT TTA-TT-T TTATTT TTAT-TT
*
8490027 TTATTAT TTATCTA TTATTT TTATTT T
1 TTATT-T TTAT-TT TTATTT TTATTT T
8490054 AATCTTTTTT
Statistics
Matches: 126, Mismatches: 25, Indels: 30
0.70 0.14 0.17
Matches are distributed among these distances:
5 10 0.08
6 68 0.54
7 38 0.30
8 10 0.08
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.69
Consensus pattern (6 bp):
TTATTT
Found at i:8489936 original size:12 final size:12
Alignment explanation
Indices: 8489882--8489946 Score: 69
Period size: 12 Copynumber: 5.4 Consensus size: 12
8489872 TAATATGGGC
**
8489882 TTATTTTTCTTT
1 TTATTTTTAATT
*
8489894 TTAATTTTAATT
1 TTATTTTTAATT
*
8489906 TTA-ATTTAATT
1 TTATTTTTAATT
8489917 TTATTTTTAATT
1 TTATTTTTAATT
*
8489929 TTATTTTTCATT
1 TTATTTTTAATT
8489941 ATTATT
1 -TTATT
8489947 ATGATTATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
11 10 0.22
12 30 0.67
13 5 0.11
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (12 bp):
TTATTTTTAATT
Found at i:8489946 original size:3 final size:3
Alignment explanation
Indices: 8489938--8490051 Score: 63
Period size: 3 Copynumber: 36.0 Consensus size: 3
8489928 TTTATTTTTC
* * *
8489938 ATT ATT ATT ATG ATT ATT ATT ATTT ATCT ATT AAT ATT -TT TTT ATTT
1 ATT ATT ATT ATT ATT ATT ATT A-TT AT-T ATT ATT ATT ATT ATT A-TT
* * *
8489985 ATTT ATCT ATT ATT ATT TTT TTT AGTT ATCT ATT AAT A-T ATT -TT ATT
1 A-TT AT-T ATT ATT ATT ATT ATT A-TT AT-T ATT ATT ATT ATT ATT ATT
*
8490032 ATTT ATCT ATT ATT TTT ATT
1 A-TT AT-T ATT ATT ATT ATT
8490052 TTAATCTTTT
Statistics
Matches: 90, Mismatches: 10, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
2 6 0.07
3 56 0.62
4 28 0.31
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8489986 original size:26 final size:26
Alignment explanation
Indices: 8489957--8490043 Score: 112
Period size: 24 Copynumber: 3.5 Consensus size: 26
8489947 ATGATTATTA
8489957 TTATTTATCTATTAATATTTTTTTAT
1 TTATTTATCTATTAATATTTTTTTAT
*
8489983 TTATTTATCTATT-AT-TATTTTT-T
1 TTATTTATCTATTAATATTTTTTTAT
* *
8490006 TTAGTTATCTATTAATA-TATTTTA-
1 TTATTTATCTATTAATATTTTTTTAT
8490030 TTATTTATCTATTA
1 TTATTTATCTATTA
8490044 TTTTTATTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
23 13 0.25
24 25 0.47
25 2 0.04
26 13 0.25
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.67
Consensus pattern (26 bp):
TTATTTATCTATTAATATTTTTTTAT
Found at i:8489998 original size:43 final size:41
Alignment explanation
Indices: 8489950--8490052 Score: 107
Period size: 47 Copynumber: 2.3 Consensus size: 41
8489940 TATTATTATG
*
8489950 ATTATTATTATTTATCTATTAATATTTTTTTATTTATTTATCT
1 ATTATTATTATTTATCTATTAATA-TATTTTA-TTATTTATCT
*
8489993 ATTATTATTTTTTTTAGTTATCTATTAATATATTTTATTATTTATCT
1 ATTATTA------TTATTTATCTATTAATATATTTTATTATTTATCT
*
8490040 ATTATTTTTATTT
1 ATTATTATTATTT
8490053 TAATCTTTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
41 5 0.10
43 7 0.14
47 16 0.32
48 6 0.12
49 16 0.32
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (41 bp):
ATTATTATTATTTATCTATTAATATATTTTATTATTTATCT
Found at i:8490003 original size:23 final size:23
Alignment explanation
Indices: 8489942--8490052 Score: 106
Period size: 23 Copynumber: 4.9 Consensus size: 23
8489932 TTTTTCATTA
*
8489942 TTAT-TATGATTATTATTATTTAT
1 TTATCTATTATTATT-TTATTTAT
* * *
8489965 CTAT-TAATATTTTTTTATTTAT
1 TTATCTATTATTATTTTATTTAT
* *
8489987 TTATCTATTATTATTTTTTTTAG
1 TTATCTATTATTATTTTATTTAT
8490010 TTATCTATTAATATATTTTA-TTAT
1 TTATCTATT-AT-TATTTTATTTAT
8490034 TTATCTATTA-T-TTTTATTT
1 TTATCTATTATTATTTTATTT
8490053 TAATCTTTTT
Statistics
Matches: 73, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
20 5 0.07
21 3 0.04
22 11 0.15
23 34 0.47
24 14 0.19
25 6 0.08
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.68
Consensus pattern (23 bp):
TTATCTATTATTATTTTATTTAT
Found at i:8490017 original size:49 final size:47
Alignment explanation
Indices: 8489926--8490054 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 47
8489916 TTTATTTTTA
* *
8489926 ATTTTATT-TTTCAT-TATTATTATGATTATTATTATTTATCTATTAATATT
1 ATTTTATTATTT-ATCTATTATTAT--TT-TTTTTAGTTATCTATTAATA-T
*
8489976 TTTTTATTTATTTATCTATTATTATTTTTTTTAGTTATCTATTAATAT
1 ATTTTA-TTATTTATCTATTATTATTTTTTTTAGTTATCTATTAATAT
*
8490024 ATTTTATTATTTATCTATTATT-TTTATTTTA
1 ATTTTATTATTTATCTATTATTATTTTTTTTA
8490055 ATCTTTTTTC
Statistics
Matches: 71, Mismatches: 5, Indels: 10
0.83 0.06 0.12
Matches are distributed among these distances:
46 8 0.11
47 16 0.23
48 6 0.08
49 18 0.25
50 7 0.10
51 4 0.06
52 12 0.17
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (47 bp):
ATTTTATTATTTATCTATTATTATTTTTTTTAGTTATCTATTAATAT
Found at i:8490033 original size:20 final size:20
Alignment explanation
Indices: 8490003--8490051 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
8489993 ATTATTATTT
8490003 TTTTTAGTTATCTAT-TAATA
1 TTTTTA-TTATCTATCTAATA
* *
8490023 TATTTTATTATTTATCTATTA
1 T-TTTTATTATCTATCTAATA
8490044 TTTTTATT
1 TTTTTATT
8490052 TTAATCTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTTATTATCTATCTAATA
Found at i:8490910 original size:5 final size:5
Alignment explanation
Indices: 8490900--8490960 Score: 65
Period size: 5 Copynumber: 12.6 Consensus size: 5
8490890 CGTTTTGATT
* *
8490900 TTTTA TTTTA TTTTA TTTTA TTTTA GTTTA TTTT- CTTTA TTTT- TTTATA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT-TA
*
8490949 TATT- TTTTA TTT
1 TTTTA TTTTA TTT
8490961 ATGTGTTTGT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
4 9 0.20
5 35 0.76
6 2 0.04
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:8491014 original size:9 final size:10
Alignment explanation
Indices: 8490993--8491021 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
8490983 ATTTTGTATG
8490993 AATAAATAAA
1 AATAAATAAA
8491003 AATAAA-AAA
1 AATAAATAAA
8491012 AATAAATAAA
1 AATAAATAAA
8491022 TTTTTAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (10 bp):
AATAAATAAA
Found at i:8491185 original size:61 final size:60
Alignment explanation
Indices: 8491120--8491318 Score: 239
Period size: 61 Copynumber: 3.3 Consensus size: 60
8491110 TTTGAAGAAA
*
8491120 GTTGAAAGTATCAATTTTCTTCAAAAATAAAAGTGTGTTTAAAAAAATATTTTTA-GAAAAG
1 GTTGAAAGTATCAATTTTCTT-GAAAATAAAAGTGTGTTT-AAAAAATATTTTTAGGAAAAG
* * *
8491181 GTTGAAAGTATCAATTTCCCTTGAAAATAAAAGTGT-TCTAAAAAATATTTTTGAGGAAAAA
1 GTTGAAAGTATCAATTT-TCTTGAAAATAAAAGTGTGTTTAAAAAATATTTTT-AGGAAAAG
* *
8491242 GTTGAAAGTATCAATTTTTCCTTGAAAATAAAA-T-TG-TTAAAAAGTATTTTGAGGAAAAG
1 GTTGAAAGTATCAA-TTTT-CTTGAAAATAAAAGTGTGTTTAAAAAATATTTTTAGGAAAAG
*
8491301 G-TAAAAGTATCAATTTTC
1 GTTGAAAGTATCAATTTTC
8491319 CTCGAAAACA
Statistics
Matches: 122, Mismatches: 10, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
56 1 0.01
57 4 0.03
58 11 0.09
59 21 0.17
60 16 0.13
61 50 0.41
62 19 0.16
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.35
Consensus pattern (60 bp):
GTTGAAAGTATCAATTTTCTTGAAAATAAAAGTGTGTTTAAAAAATATTTTTAGGAAAAG
Found at i:8493472 original size:11 final size:10
Alignment explanation
Indices: 8493436--8493481 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
8493426 TATGCAAGAA
8493436 AAAAGAAAGC
1 AAAAGAAAGC
8493446 AAAA-AAAGC
1 AAAAGAAAGC
*
8493455 TAAAGAAAGC
1 AAAAGAAAGC
8493465 AAAAAGAAA--
1 -AAAAGAAAGC
8493474 AAAAGAAA
1 AAAAGAAA
8493482 AAAAAAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
8 8 0.25
9 8 0.25
10 9 0.28
11 7 0.22
ACGTcount: A:0.76, C:0.07, G:0.15, T:0.02
Consensus pattern (10 bp):
AAAAGAAAGC
Found at i:8493478 original size:19 final size:19
Alignment explanation
Indices: 8493434--8493497 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
8493424 CTTATGCAAG
8493434 AAAAAAGAAAGCAAAAA-A
1 AAAAAAGAAAGCAAAAAGA
**
8493452 AGCTAAAGAAAGCAAAAAGA
1 A-AAAAAGAAAGCAAAAAGA
**
8493472 AAAAAAGAAAAAAAAAAGA
1 AAAAAAGAAAGCAAAAAGA
*
8493491 AGAAAAG
1 AAAAAAG
8493498 CCATGTTTTG
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
18 1 0.03
19 34 0.92
20 2 0.05
ACGTcount: A:0.78, C:0.05, G:0.16, T:0.02
Consensus pattern (19 bp):
AAAAAAGAAAGCAAAAAGA
Found at i:8495206 original size:67 final size:68
Alignment explanation
Indices: 8495123--8495276 Score: 186
Period size: 67 Copynumber: 2.3 Consensus size: 68
8495113 CATAATCTCA
* * ** ** *
8495123 AAGACCTCTAGGCATGATCTTTTAAGTTTTATGAGCATAATCACCAAGTCCTCCGAGCATGAT-T
1 AAGACCTCAAAGCATGATCTTTTAAGTCCTACAAGCATAATCACCAAGTCCTCCAAGCATGATCT
8495187 TAT
66 TAT
* *
8495190 AAGACCTCAAAGCATGATCTTTTACGTCCTCCAAGCATAATCACCAAGTCCTCCAAGCATGATCT
1 AAGACCTCAAAGCATGATCTTTTAAGTCCTACAAGCATAATCACCAAGTCCTCCAAGCATGATCT
*
8495255 TTT
66 TAT
*
8495258 AAGTCCTCTAAA-CATGATC
1 AAGACCTC-AAAGCATGATC
8495277 ACCAAGTTCT
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
67 54 0.73
68 17 0.23
69 3 0.04
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (68 bp):
AAGACCTCAAAGCATGATCTTTTAAGTCCTACAAGCATAATCACCAAGTCCTCCAAGCATGATCT
TAT
Found at i:8495225 original size:23 final size:23
Alignment explanation
Indices: 8495168--8495276 Score: 105
Period size: 23 Copynumber: 4.8 Consensus size: 23
8495158 CATAATCACC
* *
8495168 AAGTCCTCCGAGCATGAT-TTAT
1 AAGTCCTCCAAGCATGATCTTTT
* *
8495190 AAGACCTCAAAGCATGATCTTTT
1 AAGTCCTCCAAGCATGATCTTTT
* * ***
8495213 ACGTCCTCCAAGCATAATC-ACC
1 AAGTCCTCCAAGCATGATCTTTT
8495235 AAGTCCTCCAAGCATGATCTTTT
1 AAGTCCTCCAAGCATGATCTTTT
* *
8495258 AAGTCCTCTAAACATGATC
1 AAGTCCTCCAAGCATGATC
8495277 ACCAAGTTCT
Statistics
Matches: 67, Mismatches: 18, Indels: 3
0.76 0.20 0.03
Matches are distributed among these distances:
22 32 0.48
23 35 0.52
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (23 bp):
AAGTCCTCCAAGCATGATCTTTT
Found at i:8495298 original size:45 final size:45
Alignment explanation
Indices: 8495194--8495283 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 45
8495184 ATTTATAAGA
* * *
8495194 CCTCAAAGCATGATCTTTTACGTCCTCCAAGCATAATCACCAAGT
1 CCTCCAAGCATGATCTTTTAAGTCCTCCAAACATAATCACCAAGT
* *
8495239 CCTCCAAGCATGATCTTTTAAGTCCTCTAAACATGATCACCAAGT
1 CCTCCAAGCATGATCTTTTAAGTCCTCCAAACATAATCACCAAGT
8495284 TCTTTAGACA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (45 bp):
CCTCCAAGCATGATCTTTTAAGTCCTCCAAACATAATCACCAAGT
Found at i:8495363 original size:22 final size:23
Alignment explanation
Indices: 8495312--8495366 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
8495302 AAAACTTCCG
**
8495312 AGCATAATCTTTTAAGTCCTTCA
1 AGCATAATCTCCTAAGTCCTTCA
* *
8495335 AGTATAATCTCCTAA-TCTTTCA
1 AGCATAATCTCCTAAGTCCTTCA
8495357 AGCATAATCT
1 AGCATAATCT
8495367 ATAAGACCTC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (23 bp):
AGCATAATCTCCTAAGTCCTTCA
Found at i:8496381 original size:10 final size:10
Alignment explanation
Indices: 8496366--8496390 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8496356 TCATTTGATT
8496366 TTTTGGAAAA
1 TTTTGGAAAA
8496376 TTTTGGAAAA
1 TTTTGGAAAA
8496386 TTTTG
1 TTTTG
8496391 AATTTTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (10 bp):
TTTTGGAAAA
Found at i:8496446 original size:19 final size:19
Alignment explanation
Indices: 8496387--8496436 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
8496377 TTTGGAAAAT
8496387 TTTGAATTTTTTCATTAAA
1 TTTGAATTTTTTCATTAAA
8496406 TTTGAATTTTTTCATTAAA
1 TTTGAATTTTTTCATTAAA
8496425 TTTGAATTTTTT
1 TTTGAATTTTTT
8496437 GATGATATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.62
Consensus pattern (19 bp):
TTTGAATTTTTTCATTAAA
Found at i:8496954 original size:23 final size:23
Alignment explanation
Indices: 8496914--8496968 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
8496904 TTTTTCTCTA
*
8496914 TTTTATTTTTTTTATTATATGAG
1 TTTTATTTTTTATATTATATGAG
*
8496937 TTTTATTTATTTAT-TTATTTGAG
1 TTTTATTT-TTTATATTATATGAG
* *
8496960 ATATATTTT
1 TTTTATTTT
8496969 GCTTGATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 1 0.04
23 22 0.81
24 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (23 bp):
TTTTATTTTTTATATTATATGAG
Found at i:8497844 original size:14 final size:14
Alignment explanation
Indices: 8497825--8497854 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8497815 AGATATATTT
8497825 TTAATAAAAAAAAA
1 TTAATAAAAAAAAA
*
8497839 TTAATAAAAAATAA
1 TTAATAAAAAAAAA
8497853 TT
1 TT
8497855 GTAAGCCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
TTAATAAAAAAAAA
Found at i:8507419 original size:3 final size:3
Alignment explanation
Indices: 8507413--8507476 Score: 52
Period size: 3 Copynumber: 23.7 Consensus size: 3
8507403 TCATCATTGG
* * *
8507413 TAT TAT TTT TA- TAT TA- TAT TA- TAT TAT TAT T-T T-T TGT TA- TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8507455 TA- TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
8507477 GTACTATAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
2 14 0.27
3 38 0.73
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8507443 original size:6 final size:6
Alignment explanation
Indices: 8507413--8507476 Score: 52
Period size: 5 Copynumber: 11.8 Consensus size: 6
8507403 TCATCATTGG
* * *
8507413 TATTAT TTTTA- TATTA- TATTA- TATTAT TATT-T T-TTGT TA-TAG
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
8507455 TA-TAT TATTAT TATTAT TATTA
1 TATTAT TATTAT TATTAT TATTA
8507477 GTACTATAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
4 2 0.04
5 25 0.51
6 22 0.45
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (6 bp):
TATTAT
Found at i:8507463 original size:26 final size:24
Alignment explanation
Indices: 8507413--8507476 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 24
8507403 TCATCATTGG
8507413 TATTATTTTTATATTATATTATAT
1 TATTATTTTTATATTATATTATAT
* *
8507437 TATTATTTTT-TGTTATAGTATAT
1 TATTATTTTTATATTATATTATAT
*
8507460 TATTATTATTATTATTA
1 TATTATTTTTA-TATTA
8507477 GTACTATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 20 0.59
24 10 0.29
25 4 0.12
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (24 bp):
TATTATTTTTATATTATATTATAT
Found at i:8507511 original size:3 final size:3
Alignment explanation
Indices: 8507503--8507546 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8507493 TTATATTTTA
8507503 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
8507547 TTATTATTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:8507551 original size:3 final size:3
Alignment explanation
Indices: 8507545--8507625 Score: 128
Period size: 3 Copynumber: 27.3 Consensus size: 3
8507535 CTACTACTAC
8507545 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
8507593 TAT CAT TAT TAT T-T TAT TTT TAT TAT TTT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8507626 TTTTCTTCAT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
2 2 0.03
3 69 0.97
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:8508534 original size:16 final size:15
Alignment explanation
Indices: 8508510--8508542 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
8508500 TTTTTTTCAT
8508510 TTTTATTTTATTTTC
1 TTTTATTTTATTTTC
8508525 TTTTATTTTTATTTTC
1 TTTTA-TTTTATTTTC
8508541 TT
1 TT
8508543 AACTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTATTTTATTTTC
Found at i:8508534 original size:21 final size:20
Alignment explanation
Indices: 8508495--8508539 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
8508485 AAATCGTAGG
*
8508495 TTTTCTTTTTTTCATTTTTA
1 TTTTATTTTTTTCATTTTTA
*
8508515 TTTTATTTTCTTTTATTTTTA
1 TTTTATTTT-TTTCATTTTTA
8508536 TTTT
1 TTTT
8508540 CTTAACTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.11, C:0.07, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTATTTTTTTCATTTTTA
Found at i:8508549 original size:16 final size:17
Alignment explanation
Indices: 8508515--8508556 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
8508505 TTCATTTTTA
*
8508515 TTTTATTTTCTTTTA-T
1 TTTTATTTTCTTTAATT
8508531 TTTTATTTTC-TTAACTT
1 TTTTATTTTCTTTAA-TT
8508548 TTTTATTTT
1 TTTTATTTT
8508557 TAGTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 3 0.13
16 10 0.43
17 10 0.43
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTTCTTTAATT
Found at i:8508564 original size:15 final size:14
Alignment explanation
Indices: 8508495--8508570 Score: 57
Period size: 15 Copynumber: 5.1 Consensus size: 14
8508485 AAATCGTAGG
*
8508495 TTTTCTTTTTTTCAT
1 TTTTATTTTTTT-AT
8508510 TTTTATTTTATTT-T
1 TTTTATTTT-TTTAT
8508524 CTTTTATTTTTATT-T
1 -TTTTATTTTT-TTAT
* *
8508539 TCTTAACTTTTTTAT
1 T-TTTATTTTTTTAT
8508554 TTTTAGTTTTTTTAT
1 TTTTA-TTTTTTTAT
8508569 TT
1 TT
8508571 AATTTTACTG
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
14 8 0.16
15 39 0.78
16 3 0.06
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.79
Consensus pattern (14 bp):
TTTTATTTTTTTAT
Found at i:8511309 original size:2 final size:2
Alignment explanation
Indices: 8511302--8511367 Score: 53
Period size: 2 Copynumber: 33.0 Consensus size: 2
8511292 CATACTAACA
* * * * *
8511302 AT AT AT AT AC AT AT AT AT AT AT AT TT AT GT GT AT AT AT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
8511344 AT GAG AT AT -T AT AT AT CT AT AT AT
1 AT -AT AT AT AT AT AT AT AT AT AT AT
8511368 TTCTTTTTTA
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
1 1 0.02
2 48 0.96
3 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8514031 original size:73 final size:73
Alignment explanation
Indices: 8513895--8514051 Score: 192
Period size: 73 Copynumber: 2.2 Consensus size: 73
8513885 GTAGGGTGTT
* * * **
8513895 CATGGACACCCCAAAATTTGGAAAATATGAAATTTTAAAAGAAAAAATTTTTCCTGCACCTCCAA
1 CATGGACACCCCAAAAATTGGAAAATATGAAAATTTAAAAGAAAAAATTTTCCCTAAACCTCCAA
8513960 AATTTTCC
66 AATTTTCC
* * *
8513968 CATGGGCACCCCAAAAATTGGAAAATAAT-AAAATTT-AAATAAAACATTTTCCCTAAACACTCC
1 CATGGACACCCCAAAAATTGGAAAAT-ATGAAAATTTAAAAGAAAAAATTTTCCCTAAAC-CTCC
*
8514031 AAACTTTTCC
64 AAAATTTTCC
*
8514041 TATGGACACCC
1 CATGGACACCC
8514052 TTTCAATGAT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
72 17 0.24
73 52 0.73
74 2 0.03
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (73 bp):
CATGGACACCCCAAAAATTGGAAAATATGAAAATTTAAAAGAAAAAATTTTCCCTAAACCTCCAA
AATTTTCC
Found at i:8516499 original size:16 final size:15
Alignment explanation
Indices: 8516466--8516508 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
8516456 TATGTCCTTA
*
8516466 TTCTTTCTCTCTATCT
1 TTCTTTCT-TCTACCT
8516482 TTCTTTCTTCTAACCT
1 TTCTTTCTTCT-ACCT
*
8516498 TTTTTTCTTCT
1 TTCTTTCTTCT
8516509 TTGCTTCTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 3 0.12
16 21 0.88
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.65
Consensus pattern (15 bp):
TTCTTTCTTCTACCT
Found at i:8523522 original size:2 final size:2
Alignment explanation
Indices: 8523515--8523548 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8523505 GCTTTTTGAA
8523515 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8523549 TGGGGAAGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8523880 original size:29 final size:30
Alignment explanation
Indices: 8523834--8523896 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
8523824 TTTTTATAAT
8523834 TTTTTTTATTATACTTT-AATAAATTTTTA
1 TTTTTTTATTATACTTTAAATAAATTTTTA
* **
8523863 TTTTTTTATT-TATTTTTAAATATGTTTTTA
1 TTTTTTTATTATA-CTTTAAATAAATTTTTA
8523893 TTTT
1 TTTT
8523897 AAATAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 2 0.07
29 13 0.45
30 14 0.48
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (30 bp):
TTTTTTTATTATACTTTAAATAAATTTTTA
Found at i:8523988 original size:30 final size:29
Alignment explanation
Indices: 8523916--8524009 Score: 100
Period size: 30 Copynumber: 3.2 Consensus size: 29
8523906 TTTATTTATG
* *
8523916 TTAATAATTTATTTAGGTATAAATTAAAGGA
1 TTAA-AATTTATTTAGATATAAATTAAA-AA
* *
8523947 -TAAAATTTATTTTGATATAAATTAAAAT
1 TTAAAATTTATTTAGATATAAATTAAAAA
* *
8523975 TTAAAATTTTATTTAAATATAAAATAAAAA
1 TTAAAA-TTTATTTAGATATAAATTAAAAA
8524005 TTAAA
1 TTAAA
8524010 GACTAATTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
29 26 0.49
30 27 0.51
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (29 bp):
TTAAAATTTATTTAGATATAAATTAAAAA
Found at i:8524004 original size:24 final size:25
Alignment explanation
Indices: 8523955--8524006 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
8523945 GATAAAATTT
*
8523955 ATTTTGATATAAATTAAAATTTAAA
1 ATTTTGATATAAATTAAAATTAAAA
*
8523980 ATTTT-ATTTAAATATAAAA-TAAAA
1 ATTTTGATATAAAT-TAAAATTAAAA
8524004 ATT
1 ATT
8524007 AAAGACTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
ATTTTGATATAAATTAAAATTAAAA
Found at i:8524484 original size:28 final size:28
Alignment explanation
Indices: 8524451--8524510 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 28
8524441 ATTCATTTTT
8524451 AATTTAAAA-ATTATTATAACTAA-AACAA
1 AATTTAAAAGATTATT-TAACTAATAA-AA
8524479 AATTTAAAAGATTATTTAACTAATAAAA
1 AATTTAAAAGATTATTTAACTAATAAAA
8524507 AATT
1 AATT
8524511 ATTTTCTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 22 0.73
29 8 0.27
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (28 bp):
AATTTAAAAGATTATTTAACTAATAAAA
Found at i:8527544 original size:45 final size:44
Alignment explanation
Indices: 8527473--8527559 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 44
8527463 AGTCAGTCTC
* *
8527473 ATTTTATATTATAGAGTTTATGTCATAAATAATTTTTTAAATTAT
1 ATTTTATATTATAGAGTTAATATCATAAATAA-TTTTTAAATTAT
*
8527518 ATTTTATATTAT-GGGATTAATATCATAAATAATTTTTAAATT
1 ATTTTATATTATAGAG-TTAATATCATAAATAATTTTTAAATT
8527560 GTAATAAGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 12 0.32
45 26 0.68
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (44 bp):
ATTTTATATTATAGAGTTAATATCATAAATAATTTTTAAATTAT
Found at i:8531336 original size:16 final size:15
Alignment explanation
Indices: 8531300--8531353 Score: 53
Period size: 16 Copynumber: 3.7 Consensus size: 15
8531290 ATCATATTCA
8531300 TAATATT-ATTATCATT
1 TAATATTAATTA--ATT
8531316 T-ATATTAATTAATT
1 TAATATTAATTAATT
8531330 ATAATATTAA-TAATT
1 -TAATATTAATTAATT
8531345 TAA-ATTAAT
1 TAATATTAAT
8531354 ATATCAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
13 5 0.15
14 6 0.18
15 11 0.32
16 12 0.35
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TAATATTAATTAATT
Found at i:8531379 original size:29 final size:28
Alignment explanation
Indices: 8531315--8531385 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 28
8531305 TTATTATCAT
* *
8531315 TTATATTAATTAAT-TATAATATTAATA
1 TTATTTTAATTAATATATAAAATTAATA
*
8531342 --ATTTAAATTAATATATCAAAATTAATA
1 TTATTTTAATTAATATAT-AAAATTAATA
*
8531369 TTATTTTAATTAGTATA
1 TTATTTTAATTAATATA
8531386 CATATATCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
25 10 0.29
26 3 0.09
27 9 0.26
29 13 0.37
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (28 bp):
TTATTTTAATTAATATATAAAATTAATA
Found at i:8531521 original size:11 final size:11
Alignment explanation
Indices: 8531507--8531552 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
8531497 ATATGAAATT
8531507 AATATAGTAAA
1 AATATAGTAAA
8531518 AATATAGT-AA
1 AATATAGTAAA
8531528 AATA-AGTAAA
1 AATATAGTAAA
* *
8531538 AATTTATTAAA
1 AATATAGTAAA
8531549 AATA
1 AATA
8531553 ATATAACTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 3 0.10
10 11 0.37
11 16 0.53
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (11 bp):
AATATAGTAAA
Found at i:8531548 original size:20 final size:21
Alignment explanation
Indices: 8531507--8531549 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
8531497 ATATGAAATT
8531507 AATATAGTAAAAATATAGTAA
1 AATATAGTAAAAATATAGTAA
* *
8531528 AATA-AGTAAAAATTTATTAA
1 AATATAGTAAAAATATAGTAA
8531548 AA
1 AA
8531550 ATAATATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (21 bp):
AATATAGTAAAAATATAGTAA
Found at i:8532359 original size:16 final size:14
Alignment explanation
Indices: 8532324--8532407 Score: 63
Period size: 14 Copynumber: 6.2 Consensus size: 14
8532314 CACTTTGATA
8532324 TATTAAT-TTAAAT
1 TATTAATATTAAAT
8532337 TATTAATATTATAAT
1 TATTAATATTA-AAT
*
8532352 TGATTAATA-TAACT
1 T-ATTAATATTAAAT
*
8532366 TA-TAATA--ATAT
1 TATTAATATTAAAT
*
8532377 TATTAATATTATAT
1 TATTAATATTAAAT
*
8532391 TTTTAATAATT-AAT
1 TATTAAT-ATTAAAT
8532405 TAT
1 TAT
8532408 ATATAATAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
11 4 0.07
12 10 0.17
13 8 0.14
14 20 0.34
15 9 0.16
16 7 0.12
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (14 bp):
TATTAATATTAAAT
Found at i:8532461 original size:18 final size:18
Alignment explanation
Indices: 8532438--8532503 Score: 55
Period size: 20 Copynumber: 3.7 Consensus size: 18
8532428 TTAGAGGAAC
8532438 TAAAATATTTTTAAAATT
1 TAAAATATTTTTAAAATT
** **
8532456 T-AAA-ATTTGGAAAAAC
1 TAAAATATTTTTAAAATT
*
8532472 TAAAAAATTTTTAAAATAT
1 TAAAATATTTTTAAAAT-T
8532491 TCAAAATATTTTT
1 T-AAAATATTTTT
8532504 TATATTAGAA
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
16 9 0.26
17 6 0.17
18 9 0.26
19 1 0.03
20 10 0.29
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (18 bp):
TAAAATATTTTTAAAATT
Found at i:8532651 original size:20 final size:21
Alignment explanation
Indices: 8532625--8532680 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
8532615 CAATTGCCAT
*
8532625 ATCAACAAAGTCAATGGC-AC
1 ATCAACATAGTCAATGGCTAC
* * *
8532645 GTCAACATGGCCAATGGCTAC
1 ATCAACATAGTCAATGGCTAC
8532666 ATCAACATAGTCAAT
1 ATCAACATAGTCAAT
8532681 AGCCTTGTCA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (21 bp):
ATCAACATAGTCAATGGCTAC
Found at i:8534063 original size:20 final size:20
Alignment explanation
Indices: 8534040--8534086 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
8534030 AAGAATACAA
*
8534040 AAAATAATAGACAAATAAAT
1 AAAATAATAAACAAATAAAT
* * *
8534060 AAAAGAATAAATAAGTAAAT
1 AAAATAATAAACAAATAAAT
8534080 AAAATAA
1 AAAATAA
8534087 CATATAAATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.19
Consensus pattern (20 bp):
AAAATAATAAACAAATAAAT
Found at i:8534093 original size:20 final size:20
Alignment explanation
Indices: 8534052--8534098 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
8534042 AATAATAGAC
*
8534052 AAATAAATAAAAGAATAAAT
1 AAATAAATAAAAGAACAAAT
* * *
8534072 AAGTAAATAAAATAACATAT
1 AAATAAATAAAAGAACAAAT
8534092 AAATAAA
1 AAATAAA
8534099 AGTAAAATTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.21
Consensus pattern (20 bp):
AAATAAATAAAAGAACAAAT
Found at i:8535759 original size:83 final size:83
Alignment explanation
Indices: 8535651--8535811 Score: 198
Period size: 83 Copynumber: 1.9 Consensus size: 83
8535641 GTTCTAAAAT
** * * * * **
8535651 AAATTCAACTTGAAAGACTTATGAATATTGCTTGGAGGACTTAGAGATTATGTTCGGTGGTCTTA
1 AAATTCAACTTGAAAGACTTATGAATATTGCCCGAAAGACTTAGAGATTATGCTCAGAAGTCTTA
8535716 CAAACCAAACTTTGAAAC
66 CAAACCAAACTTTGAAAC
* * *
8535734 AAATTCAATTTAGAAA-ACTTATGAATCTTGCCCGAAAGATTTAGAGATTATGCTCAGAAGTCTT
1 AAATTCAACTT-GAAAGACTTATGAATATTGCCCGAAAGACTTAGAGATTATGCTCAGAAGTCTT
*
8535798 ACAAATCAAACTTT
65 ACAAACCAAACTTT
8535812 AAAATAGATT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
83 61 0.94
84 4 0.06
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (83 bp):
AAATTCAACTTGAAAGACTTATGAATATTGCCCGAAAGACTTAGAGATTATGCTCAGAAGTCTTA
CAAACCAAACTTTGAAAC
Found at i:8535834 original size:83 final size:82
Alignment explanation
Indices: 8535710--8535988 Score: 235
Period size: 83 Copynumber: 3.4 Consensus size: 82
8535700 ATGTTCGGTG
* * * * * * * * *
8535710 GTCTTACAAACCAAACTTTGAAACAAATTCAATTTAGAAAACTTATGAATCTTGCCCGAAAGATT
1 GTCTTACAAATCAAACTTTAAAATAGATTTAGTTCAAAAAACTTATGAATCTTGTCCGAAAGATT
*
8535775 TAGAGATTATGCTCAGAA
66 TAGAAATTAT-CTCAGAA
* * * *
8535793 GTCTTACAAATCAAACTTTAAAATAGATTTAGTTCAAAAAACTTACGAATCTTGTCTGAAGGACT
1 GTCTTACAAATCAAACTTTAAAATAGATTTAGTTCAAAAAACTTATGAATCTTGTCCGAAAGATT
*
8535858 TAAAAATTA-CATCTA-AA
66 TAGAAATTATC-TC-AGAA
* * * * * *
8535875 GGTCTTATAAATCTAGATTTTAAAATAGATTTAG-TCTAAAAAACTTATAAATTTTATCCGAAAG
1 -GTCTTACAAATC-AAACTTTAAAATAGATTTAGTTC-AAAAAACTTATGAATCTTGTCCGAAAG
*
8535939 ATTTAGTAAATTCATC-CAAAA
63 ATTTAG-AAATT-ATCTCAGAA
*
8535960 GTTTTTA-AAATCAAACTTTAAAATAGATT
1 G-TCTTACAAATCAAACTTTAAAATAGATT
8535989 CAGCTCGGAA
Statistics
Matches: 157, Mismatches: 29, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
81 1 0.01
82 4 0.03
83 88 0.56
84 50 0.32
85 12 0.08
86 1 0.01
87 1 0.01
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (82 bp):
GTCTTACAAATCAAACTTTAAAATAGATTTAGTTCAAAAAACTTATGAATCTTGTCCGAAAGATT
TAGAAATTATCTCAGAA
Found at i:8535971 original size:84 final size:83
Alignment explanation
Indices: 8535793--8535988 Score: 209
Period size: 84 Copynumber: 2.3 Consensus size: 83
8535783 ATGCTCAGAA
* * * * *
8535793 GTCTTACAAATCAAACTTTAAAATAGATTTAGTTCAAAAAACTTACGAATCTTGTCTGAAGGACT
1 GTCTTATAAATCAAACTTTAAAATAGATTTAGTTCAAAAAACTTACAAATCTTATCCGAAAGACT
*
8535858 TAAAAATTACATCTAAAG
66 TAAAAATTACATCAAAAG
* * * *
8535876 GTCTTATAAATCTAGATTTTAAAATAGATTTAG-TCTAAAAAACTTATAAATTTTATCCGAAAGA
1 GTCTTATAAATC-AAACTTTAAAATAGATTTAGTTC-AAAAAACTTACAAATCTTATCCGAAAGA
* *
8535940 TTTAGTAAATT-CATCCAAAAG
64 CTTA-AAAATTACAT-CAAAAG
* *
8535961 TTTTTA-AAATCAAACTTTAAAATAGATT
1 GTCTTATAAATCAAACTTTAAAATAGATT
8535989 CAGCTCGGAA
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
83 28 0.30
84 51 0.55
85 14 0.15
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (83 bp):
GTCTTATAAATCAAACTTTAAAATAGATTTAGTTCAAAAAACTTACAAATCTTATCCGAAAGACT
TAAAAATTACATCAAAAG
Found at i:8537164 original size:15 final size:15
Alignment explanation
Indices: 8537144--8537173 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8537134 AGTCATGAGT
*
8537144 TACTTTTAGAGTTTC
1 TACTTTTAAAGTTTC
8537159 TACTTTTAAAGTTTC
1 TACTTTTAAAGTTTC
8537174 AATCTTACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.53
Consensus pattern (15 bp):
TACTTTTAAAGTTTC
Found at i:8544790 original size:15 final size:15
Alignment explanation
Indices: 8544760--8544797 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
8544750 AAATGAATGA
8544760 AAATAGATAAAAAAAT
1 AAATA-ATAAAAAAAT
*
8544776 AAATAATAAATAAAT
1 AAATAATAAAAAAAT
8544791 AAATAAT
1 AAATAAT
8544798 TACAAACCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (15 bp):
AAATAATAAAAAAAT
Found at i:8546128 original size:104 final size:104
Alignment explanation
Indices: 8545954--8546141 Score: 222
Period size: 104 Copynumber: 1.8 Consensus size: 104
8545944 ATCTTTTAAG
* *
8545954 AAATTATAAAGCTTTCTAATATATTGGTAAAACCTTATTTTAGAAAAATATTGGCCCTTGAATAT
1 AAATTATAAAGCTTTCTAATATATTAGTAAAACCTTATTTTAGAAAAATATTGGCCCTTCAATAT
8546019 ATTGGT-AAGGCTTTTTATTTTTATATATTTGAAATAAATA
66 ATTGGTGAA-GC-TTTTATTTTTATATATTTGAAATAAATA
* * ****
8546059 AAATTAT-AAGTTTTCTAATATATTAGTAAAATCTTATTTTTTTTAAATGATT-G-CCTTCCAAT
1 AAATTATAAAGCTTTCTAATATATTAGTAAAACCTTATTTTAGAAAAAT-ATTGGCCCTT-CAAT
* *
8546121 CTGTTGGTGAAGCTTTTATTT
64 ATATTGGTGAAGCTTTTATTT
8546142 AAAATTTTAT
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
103 12 0.17
104 46 0.66
105 12 0.17
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.46
Consensus pattern (104 bp):
AAATTATAAAGCTTTCTAATATATTAGTAAAACCTTATTTTAGAAAAATATTGGCCCTTCAATAT
ATTGGTGAAGCTTTTATTTTTATATATTTGAAATAAATA
Found at i:8547272 original size:19 final size:21
Alignment explanation
Indices: 8547225--8547272 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
8547215 TTAAAACCAG
*
8547225 ATAAATAAAAGACTAAAATAT
1 ATAAATAAAAGACTAAAATAA
*
8547246 ATATATAAAAGA-T-AAATAA
1 ATAAATAAAAGACTAAAATAA
8547265 ATAAATAA
1 ATAAATAA
8547273 GACAAACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 12 0.50
20 1 0.04
21 11 0.46
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (21 bp):
ATAAATAAAAGACTAAAATAA
Found at i:8549867 original size:70 final size:73
Alignment explanation
Indices: 8549768--8549912 Score: 179
Period size: 71 Copynumber: 2.0 Consensus size: 73
8549758 TCATAGTTTG
* * * * *
8549768 AATAATTATGTTTGAATAAGAAACATTTGTTGAAAACAGTTATGTAA-TAAAAGAGTTACAACTA
1 AATAATTATATTTAAATAAGAAACATTTGTTGAAAACAATTATATAACAAAAAGAGTTACAACTA
8549832 -TTAAATA
66 TTTAAATA
* * * * *
8549839 AATAATTATATTTAAAT-AGAAACGTTTGTTTATAATAATTATATAACAAAAAGAGTTATAACTA
1 AATAATTATATTTAAATAAGAAACATTTGTTGAAAACAATTATATAACAAAAAGAGTTACAACTA
8549903 TTTAAATA
66 TTTAAATA
8549911 AA
1 AA
8549913 CTAACGTGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
70 23 0.37
71 30 0.48
72 9 0.15
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.36
Consensus pattern (73 bp):
AATAATTATATTTAAATAAGAAACATTTGTTGAAAACAATTATATAACAAAAAGAGTTACAACTA
TTTAAATA
Found at i:8551047 original size:21 final size:21
Alignment explanation
Indices: 8551000--8551048 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
8550990 TATTATTGAT
* * *
8551000 TTAATCTTATAATTATAATAT
1 TTAATTTTATAATTAAAATAA
*
8551021 TTAATTTTATTATTAAAATAA
1 TTAATTTTATAATTAAAATAA
8551042 TTAATTT
1 TTAATTT
8551049 CATATTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TTAATTTTATAATTAAAATAA
Found at i:8555198 original size:33 final size:33
Alignment explanation
Indices: 8555156--8555222 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
8555146 TTTTTTTTCG
*
8555156 CCTGCAAATCTCATACTACACTTTATTGCTACA
1 CCTGCAAATCTCATACTACACTTTATTACTACA
* *
8555189 CCTGCAAATCTGATACTACATTTTATTACTACA
1 CCTGCAAATCTCATACTACACTTTATTACTACA
8555222 C
1 C
8555223 TTTAGTGAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (33 bp):
CCTGCAAATCTCATACTACACTTTATTACTACA
Found at i:8558020 original size:109 final size:110
Alignment explanation
Indices: 8557827--8558128 Score: 498
Period size: 109 Copynumber: 2.8 Consensus size: 110
8557817 ATGCCCGCAC
*
8557827 CTAATTTTATGAAATAGGCACTAAACTTAGTAGCTTTTGGAAGTCGCTTGTTAGGTTCTTTAGTT
1 CTAATTTTATGAAATAGGGACTAAACTTAGTAGCTTTTGGAAGTCGCTTGTTAGGTTCTTTAGTT
* *
8557892 CCTATAGCATTATGTGGTCATTACTGCGGTTCTTATGGCCTGCAT
66 CCTATAGCATTATGTGGTCATTACTACGGTTCTTATAGCCTGCAT
* * *
8557937 TTAATTTTATGAAATAGGGACTAAACTTAGTAGC-TTTGGAAGTCGCTTGTCAGGTTCTGTAGTT
1 CTAATTTTATGAAATAGGGACTAAACTTAGTAGCTTTTGGAAGTCGCTTGTTAGGTTCTTTAGTT
*
8558001 CCTATAGCATTATCTGGTCATTACTACGGTTCTTATAGCCTGCAT
66 CCTATAGCATTATGTGGTCATTACTACGGTTCTTATAGCCTGCAT
* * * *
8558046 CTAATTTTATGAAATAGGGACTAAACTTTGCAGCTTTTGGAAGTTGCTTGTTAGGCTCTTTAGTT
1 CTAATTTTATGAAATAGGGACTAAACTTAGTAGCTTTTGGAAGTCGCTTGTTAGGTTCTTTAGTT
8558111 CCTATAGCATTATGTGGT
66 CCTATAGCATTATGTGGT
8558129 AATCACTTCA
Statistics
Matches: 176, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
109 101 0.57
110 75 0.43
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.40
Consensus pattern (110 bp):
CTAATTTTATGAAATAGGGACTAAACTTAGTAGCTTTTGGAAGTCGCTTGTTAGGTTCTTTAGTT
CCTATAGCATTATGTGGTCATTACTACGGTTCTTATAGCCTGCAT
Found at i:8560595 original size:25 final size:25
Alignment explanation
Indices: 8560566--8560617 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
8560556 TACTTAAAAA
*
8560566 TTTAAAATATTAATATTAAATTTTT
1 TTTAAAATATTAATATTAAATATTT
* * *
8560591 TTTAATATTTTAATTTTAAATATTT
1 TTTAAAATATTAATATTAAATATTT
8560616 TT
1 TT
8560618 ATAATTCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
TTTAAAATATTAATATTAAATATTT
Found at i:8560599 original size:23 final size:25
Alignment explanation
Indices: 8560575--8560622 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
8560565 ATTTAAAATA
*
8560575 TTAATATTAAAT-TTTTTTTAATATT
1 TTAATATTAAATATTTTTATAATA-T
*
8560600 TTAATTTTAAATATTTTTATAAT
1 TTAATATTAAATATTTTTATAAT
8560623 TCTACTCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
25 11 0.55
26 9 0.45
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
TTAATATTAAATATTTTTATAATAT
Found at i:8561100 original size:42 final size:43
Alignment explanation
Indices: 8561054--8561163 Score: 105
Period size: 48 Copynumber: 2.4 Consensus size: 43
8561044 TTAATATTTT
8561054 AATAATAAATAATATTATATCATTATTTTAATAATAAAT-AAA
1 AATAATAAATAATATTATATCATTATTTTAATAATAAATGAAA
* * * **
8561096 AATAATAACATATATAATAATATTTTTATTATTTTAATAATTAATGCTA
1 AATAATAA-ATA-AT-AT--TA-TATCATTATTTTAATAATAAATGAAA
8561145 AATAATATAATAATATTAT
1 AATAATA-AATAATATTAT
8561164 TTTCTTAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
42 8 0.15
43 3 0.05
44 3 0.05
45 4 0.07
47 4 0.07
48 21 0.38
49 11 0.20
50 1 0.02
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (43 bp):
AATAATAAATAATATTATATCATTATTTTAATAATAAATGAAA
Found at i:8561362 original size:15 final size:16
Alignment explanation
Indices: 8561323--8561363 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
8561313 AAAATAAAAT
8561323 ATAAATATTTTAATAG
1 ATAAATATTTTAATAG
*
8561339 TACAAATATTTTAATA-
1 -ATAAATATTTTAATAG
8561355 ATAAATATT
1 ATAAATATT
8561364 ACTATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 8 0.36
17 14 0.64
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
ATAAATATTTTAATAG
Found at i:8561404 original size:17 final size:18
Alignment explanation
Indices: 8561371--8561407 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
8561361 ATTACTATTT
8561371 TATTATTAATAAAAATAA
1 TATTATTAATAAAAATAA
8561389 TATT-TTAA-AAATAATAA
1 TATTATTAATAAA-AATAA
8561406 TA
1 TA
8561408 CTAGTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 3 0.17
17 11 0.61
18 4 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TATTATTAATAAAAATAA
Found at i:8561407 original size:20 final size:20
Alignment explanation
Indices: 8561378--8561417 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
8561368 TTTTATTATT
*
8561378 AATAAAAATAATATTTTAAA
1 AATAAAAATAATAGTTTAAA
* *
8561398 AATAATAATACTAGTTTAAA
1 AATAAAAATAATAGTTTAAA
8561418 TATTTTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (20 bp):
AATAAAAATAATAGTTTAAA
Found at i:8561593 original size:25 final size:25
Alignment explanation
Indices: 8561531--8561604 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 25
8561521 TTCTTGAATA
*
8561531 TTAATAATTTTAATAATAAATA-ATT
1 TTAAT-ATTTTAATAATAAATATTTT
8561556 TTAATATACTTTAATAATAAATATTTT
1 TTAATAT--TTTAATAATAAATATTTT
*
8561583 TTAATATTTTAATAGT-AATATT
1 TTAATATTTTAATAATAAATATT
8561605 AATATTATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
24 8 0.18
25 13 0.30
26 14 0.32
27 9 0.20
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (25 bp):
TTAATATTTTAATAATAAATATTTT
Found at i:8565580 original size:25 final size:26
Alignment explanation
Indices: 8565524--8565573 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
8565514 ATAAATAAAT
8565524 AAAATATTTATAAAATATCAAATATC
1 AAAATATTTATAAAATATCAAATATC
8565550 AAAATA-TTAT-AAATATCATAATAT
1 AAAATATTTATAAAATATCA-AATAT
8565574 TTTAATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.35
25 9 0.39
26 6 0.26
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (26 bp):
AAAATATTTATAAAATATCAAATATC
Found at i:8580182 original size:23 final size:23
Alignment explanation
Indices: 8580139--8580185 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8580129 AAGAGATTAC
*
8580139 ATATATTAAGATTTAAATTTTAA
1 ATATATTAAGATATAAATTTTAA
*
8580162 ATATATTAA-ATATAATCTTTTAA
1 ATATATTAAGATATAA-ATTTTAA
8580185 A
1 A
8580186 GATGATTACG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATATATTAAGATATAAATTTTAA
Found at i:8580821 original size:26 final size:26
Alignment explanation
Indices: 8580790--8580847 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 26
8580780 TTTAAACTTG
*
8580790 TTAAATATTCTTTAAAAATAATTGTA
1 TTAAATATTCTTTAAAAATAATGGTA
* * *
8580816 TTAAAT-TTTTTTTAATATAATGGTA
1 TTAAATATTCTTTAAAAATAATGGTA
*
8580841 TGAAATA
1 TTAAATA
8580848 ATTAAAATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (26 bp):
TTAAATATTCTTTAAAAATAATGGTA
Found at i:8581557 original size:24 final size:22
Alignment explanation
Indices: 8581529--8581573 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8581519 CGATACTTAT
*
8581529 AATATTAATATAATTAAAATATAA
1 AATATGAATAT-A-TAAAATATAA
*
8581553 AATATGATTATATAAAATATA
1 AATATGAATATATAAAATATA
8581574 TACATAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.47
23 1 0.05
24 9 0.47
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AATATGAATATATAAAATATAA
Found at i:8582421 original size:2 final size:2
Alignment explanation
Indices: 8582408--8582454 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
8582398 CAAAGCTCAT
* * * *
8582408 TA TA TA TT TA TA TA TA TG TG TG TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8582450 TA TA T
1 TA TA T
8582455 GTAGCTTTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.53
Consensus pattern (2 bp):
TA
Found at i:8584793 original size:14 final size:14
Alignment explanation
Indices: 8584774--8584803 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8584764 TTTTATATAT
8584774 ATATATATATTGTG
1 ATATATATATTGTG
8584788 ATATATATATTGTG
1 ATATATATATTGTG
8584802 AT
1 AT
8584804 TTCTGTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (14 bp):
ATATATATATTGTG
Found at i:8588312 original size:73 final size:73
Alignment explanation
Indices: 8588188--8588326 Score: 226
Period size: 73 Copynumber: 1.9 Consensus size: 73
8588178 TCCCCCTGAT
* * *
8588188 CTCATGGTTTTGTCTTACAAAAGGCGTCTTACAAAGAAGAGATGGTATGAACTCGATGTGGGATT
1 CTCATGGTTTTGTCTTACAAAAGACGCCTCACAAAGAAGAGATGGTATGAACTCGATGTGGGATT
8588253 CTATTGAC
66 CTATTGAC
*
8588261 CTCATGGTTTTGTCTTACAAAAGACGCCTCAC-AAGAAAGAGATGGTGTGAACTCGATGTGGGAT
1 CTCATGGTTTTGTCTTACAAAAGACGCCTCACAAAG-AAGAGATGGTATGAACTCGATGTGGGAT
8588325 TC
65 TC
8588327 AAGACTTCTC
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 3 0.05
73 58 0.95
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (73 bp):
CTCATGGTTTTGTCTTACAAAAGACGCCTCACAAAGAAGAGATGGTATGAACTCGATGTGGGATT
CTATTGAC
Found at i:8594784 original size:34 final size:34
Alignment explanation
Indices: 8594741--8594807 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
8594731 CAAGTTAGTA
8594741 GGAAAATAATATTACTATGTTTACCACGTATAAC
1 GGAAAATAATATTACTATGTTTACCACGTATAAC
*
8594775 GGAAAATAATATTTCTATGTTTACCACGTATAA
1 GGAAAATAATATTACTATGTTTACCACGTATAA
8594808 AAATGTTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (34 bp):
GGAAAATAATATTACTATGTTTACCACGTATAAC
Found at i:8595993 original size:12 final size:12
Alignment explanation
Indices: 8595978--8596002 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8595968 TTTTTATCAA
8595978 TATTTTTTATTT
1 TATTTTTTATTT
8595990 TATTTTTTATTT
1 TATTTTTTATTT
8596002 T
1 T
8596003 TTTGGTTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:8596950 original size:41 final size:41
Alignment explanation
Indices: 8596870--8597025 Score: 190
Period size: 41 Copynumber: 3.8 Consensus size: 41
8596860 TTGTAAACTG
* * * *
8596870 AGAGGCTCAACAACTTTGAGAAA-AATAAATGCTCTTCTAAAC
1 AGAGGCACCACAACTTTGA-AAAGTA-AAATGCTCATCTAAAC
* * *
8596912 A-AGGGTACCATAACTTTGAAAAGTAAAATGCTCCTCTAAAC
1 AGA-GGCACCACAACTTTGAAAAGTAAAATGCTCATCTAAAC
* *
8596953 AGAGGCACCACAACTTTGAAAAATAAAATGCTCATTTAAAC
1 AGAGGCACCACAACTTTGAAAAGTAAAATGCTCATCTAAAC
8596994 AGAGGCACCACAACTTTGAAAAGTAAAATGCT
1 AGAGGCACCACAACTTTGAAAAGTAAAATGCT
8597026 TCTTGACGAT
Statistics
Matches: 99, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
41 84 0.85
42 15 0.15
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.22
Consensus pattern (41 bp):
AGAGGCACCACAACTTTGAAAAGTAAAATGCTCATCTAAAC
Found at i:8597009 original size:82 final size:83
Alignment explanation
Indices: 8596870--8597025 Score: 221
Period size: 82 Copynumber: 1.9 Consensus size: 83
8596860 TTGTAAACTG
* * *
8596870 AGAGGCTCAACAACTTTGAGAAAAATAAATGCTCTTCTAAACAAGGGTACCATAACTTTGAAAAG
1 AGAGGCACAACAACTTTGAGAAAAATAAATGCTCTTCTAAACAAGGGCACCACAACTTTGAAAAG
8596935 TAAAATGCTCCTCTAAAC
66 TAAAATGCTCCTCTAAAC
*
8596953 AGAGGCACCACAACTTT--GAAAAATAAAATGCTCATT-TAAAC-AGAGGCACCACAACTTTGAA
1 AGAGGCACAACAACTTTGAGAAAAAT-AAATGCTC-TTCTAAACAAG-GGCACCACAACTTTGAA
8597014 AAGTAAAATGCT
63 AAGTAAAATGCT
8597026 TCTTGACGAT
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
81 9 0.14
82 40 0.61
83 17 0.26
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.22
Consensus pattern (83 bp):
AGAGGCACAACAACTTTGAGAAAAATAAATGCTCTTCTAAACAAGGGCACCACAACTTTGAAAAG
TAAAATGCTCCTCTAAAC
Found at i:8597315 original size:20 final size:20
Alignment explanation
Indices: 8597277--8597315 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8597267 TCACATCCAA
*
8597277 AAGTTCAAAGCTTCTCATTC
1 AAGTTCAAAGCTTCACATTC
*
8597297 AAGTTCAAAGGTTCACATT
1 AAGTTCAAAGCTTCACATT
8597316 TGACAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
AAGTTCAAAGCTTCACATTC
Found at i:8597474 original size:21 final size:22
Alignment explanation
Indices: 8597447--8597504 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 22
8597437 GGTTTTACAT
*
8597447 CTCAAAGATTCTTATTTGA-AA
1 CTCAAAGATTCTCATTTGAGAA
*
8597468 TTCAAAGATTCTCATTTGAGAA
1 CTCAAAGATTCTCATTTGAGAA
* *
8597490 CTCAAATAGTCTCAT
1 CTCAAAGATTCTCAT
8597505 CAAAAGATTC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
21 17 0.55
22 14 0.45
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAGAA
Found at i:8597824 original size:23 final size:23
Alignment explanation
Indices: 8597798--8597841 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
8597788 TTGGAACAAG
*
8597798 TTTCATCAAC-TGATCATCATTAT
1 TTTCATC-ACTTGATCACCATTAT
8597821 TTTCATCACTTGATCACCATT
1 TTTCATCACTTGATCACCATT
8597842 CATAGGCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.27, C:0.25, G:0.05, T:0.43
Consensus pattern (23 bp):
TTTCATCACTTGATCACCATTAT
Found at i:8598729 original size:21 final size:19
Alignment explanation
Indices: 8598714--8598797 Score: 93
Period size: 19 Copynumber: 4.4 Consensus size: 19
8598704 TTCTTTCATC
8598714 TTTTTTTTTCATTCTTTTA
1 TTTTTTTTTCATTCTTTTA
* *
8598733 TTTTTTTTTCATTTTTTTGC
1 TTTTTTTTTCATTCTTTT-A
*
8598753 TTTCATTTTTTCATTTTTTTA
1 TTT--TTTTTTCATTCTTTTA
8598774 -TTTTTTTT-ATT-TTTTA
1 TTTTTTTTTCATTCTTTTA
8598790 TTTTTTTT
1 TTTTTTTT
8598798 CATCCATTAG
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
16 5 0.09
17 10 0.17
18 6 0.10
19 17 0.29
20 5 0.09
22 15 0.26
ACGTcount: A:0.10, C:0.07, G:0.01, T:0.82
Consensus pattern (19 bp):
TTTTTTTTTCATTCTTTTA
Found at i:8598742 original size:46 final size:42
Alignment explanation
Indices: 8598692--8598801 Score: 100
Period size: 41 Copynumber: 2.5 Consensus size: 42
8598682 TGAATCTTCA
8598692 TTTTCTTTAATTTTCTTTCATCTTTTTTTTTCATTCTTTTATTTTT
1 TTTTCTTT-ATTTTCTTTCATC---TTTTTTCATTCTTTTATTTTT
*
8598738 TTTTCATTT-TTTTGCTTTCA--TTTTTTCATTTTTTTATTTTTT
1 TTTTC-TTTATTTT-CTTTCATCTTTTTTCATTCTTTTA-TTTTT
* *
8598780 TTATTTTTTATTTTTTTTCATC
1 TT-TTCTTTATTTTCTTTCATC
8598802 CATTAGTGAT
Statistics
Matches: 54, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
41 15 0.28
42 15 0.28
43 6 0.11
45 4 0.07
46 11 0.20
47 3 0.06
ACGTcount: A:0.11, C:0.11, G:0.01, T:0.77
Consensus pattern (42 bp):
TTTTCTTTATTTTCTTTCATCTTTTTTCATTCTTTTATTTTT
Found at i:8598750 original size:32 final size:32
Alignment explanation
Indices: 8598688--8598772 Score: 91
Period size: 32 Copynumber: 2.6 Consensus size: 32
8598678 AATTTGAATC
* * *
8598688 TTCATTTTCTTTAATTTTCTTTCATCTTTTT-TT
1 TTCA-TTT-TTTATTTTTTTTTCATCTTTTTGCT
*
8598721 TTCATTCTTTTATTTTTTTTTCATTTTTTTGCT
1 TTCATT-TTTTATTTTTTTTTCATCTTTTTGCT
8598754 TTCATTTTTTCATTTTTTT
1 TTCATTTTTT-ATTTTTTT
8598773 ATTTTTTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
32 25 0.56
33 20 0.44
ACGTcount: A:0.11, C:0.13, G:0.01, T:0.75
Consensus pattern (32 bp):
TTCATTTTTTATTTTTTTTTCATCTTTTTGCT
Found at i:8598796 original size:8 final size:8
Alignment explanation
Indices: 8598716--8598796 Score: 60
Period size: 8 Copynumber: 9.9 Consensus size: 8
8598706 CTTTCATCTT
8598716 TTTTTTTCA
1 TTTTTTT-A
*
8598725 TTCTTTTA
1 TTTTTTTA
8598733 TTTTTTT-
1 TTTTTTTA
8598740 TTCATTTTT-
1 TT--TTTTTA
* *
8598749 TTGCTTTCA
1 TT-TTTTTA
*
8598758 TTTTTTCA
1 TTTTTTTA
8598766 TTTTTTTA
1 TTTTTTTA
8598774 TTTTTTT-
1 TTTTTTTA
8598781 TATTTTTTA
1 T-TTTTTTA
8598790 TTTTTTT
1 TTTTTTT
8598797 TCATCCATTA
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
7 3 0.05
8 41 0.68
9 16 0.27
ACGTcount: A:0.10, C:0.07, G:0.01, T:0.81
Consensus pattern (8 bp):
TTTTTTTA
Found at i:8599197 original size:23 final size:23
Alignment explanation
Indices: 8599153--8599198 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
8599143 TTGTTTATGG
*
8599153 CATTTTCTTTTCTCTCTTTCTTT
1 CATTTTCTTTTCTCTCTCTCTTT
*
8599176 CATTTTGCTTTTCTTTC-CTCTTT
1 CATTTT-CTTTTCTCTCTCTCTTT
8599199 GAGATATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.04, C:0.26, G:0.02, T:0.67
Consensus pattern (23 bp):
CATTTTCTTTTCTCTCTCTCTTT
Found at i:8602353 original size:61 final size:62
Alignment explanation
Indices: 8602224--8602361 Score: 152
Period size: 61 Copynumber: 2.2 Consensus size: 62
8602214 CCTCCATTTG
* * * ** *
8602224 CTAAAATTATTATAATGCCCCTCTTATCATAATTACGAAAATACCCTTAATATTATGTTTTA
1 CTAAAATTACTATAATGCCCCTCTTATCATAACTACGAAAATACCCTTAACATTATAATTGA
* * * * * *
8602286 CCAAAATTACTATAATG-CCTTCTTATCATAACTATGAAAATACCGTTCACATTATAATTGG
1 CTAAAATTACTATAATGCCCCTCTTATCATAACTACGAAAATACCCTTAACATTATAATTGA
*
8602347 TTAAAATTACTATAA
1 CTAAAATTACTATAA
8602362 CACCCTTTAA
Statistics
Matches: 62, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
61 47 0.76
62 15 0.24
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.38
Consensus pattern (62 bp):
CTAAAATTACTATAATGCCCCTCTTATCATAACTACGAAAATACCCTTAACATTATAATTGA
Found at i:8602672 original size:25 final size:26
Alignment explanation
Indices: 8602644--8602700 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
8602634 GAGTAAATAA
*
8602644 AATTACTATAAT-GCCCTCATAACAT
1 AATTACTAAAATAGCCCTCATAACAT
* * *
8602669 AATTACTAAAATATCCCTCTTACCAT
1 AATTACTAAAATAGCCCTCATAACAT
8602695 AATTAC
1 AATTAC
8602701 CCAAAATTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 11 0.41
26 16 0.59
ACGTcount: A:0.40, C:0.25, G:0.02, T:0.33
Consensus pattern (26 bp):
AATTACTAAAATAGCCCTCATAACAT
Found at i:8602862 original size:25 final size:24
Alignment explanation
Indices: 8602834--8602886 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
8602824 AAATTTCTAT
*
8602834 AATACCTTCTAACTATAATTACAAA
1 AATACATT-TAACTATAATTACAAA
* *
8602859 AATACATTTTACTATAATTATAAA
1 AATACATTTAACTATAATTACAAA
8602883 AATA
1 AATA
8602887 TTCTTCAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (24 bp):
AATACATTTAACTATAATTACAAA
Found at i:8604075 original size:31 final size:31
Alignment explanation
Indices: 8604037--8604102 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
8604027 TACCACTCAT
*
8604037 ATTATAATGGGCTAAAATTATTATAATGCCC
1 ATTATAATGGGCTAAAATTATTATAATACCC
8604068 ATTATAATGGGCTAAAATTATTATAATACCC
1 ATTATAATGGGCTAAAATTATTATAATACCC
8604099 ATTA
1 ATTA
8604103 ACCATAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (31 bp):
ATTATAATGGGCTAAAATTATTATAATACCC
Found at i:8604229 original size:587 final size:577
Alignment explanation
Indices: 8602462--8604648 Score: 1998
Period size: 587 Copynumber: 3.8 Consensus size: 577
8602452 TATTGTAACC
** ** * *
8602462 TTTAAGCATAATTATGAAAATACTATTTTGATTGCTTCATAATTT-CTAATTAAATTTTAACATA
1 TTTAAGCATAATTACAAAAATACCCTTTTGATTGCTTCAT-ATTTACTCATTAAATTTTAACATC
**
8602526 CATAAAATAATATAAAATT-A-TCTCATTAGAAATGATCATAATGTCCTTTTAATTACTTGACAA
65 CAT-AAATAATATAAAATTAATTC-CATTAGAAATGATCATAATACCCTTTTAATTACTTGACAA
* * * *
8602589 TTGAATTATATGCATCCAAGTTAACTGTAATACCCATTTTTCTATGAGTAAATAAAATTACTATA
128 TTGAATTACATGCATCCAAATTGACTATAATACCCATTTTTCTATGAGTAAATAAAATTACTATA
* * * *
8602654 ATGCCCTCATAACATAATTACTAAAATATCCCTCTTACCATAATTACCCAAAATTACTATAATGT
193 ATGCCCTCTTAACATAATTACTAAAATACCCCTCTTAACATAATTATCCAAAATTACTATAATGT
** * * * * * * * * *
8602719 TTTTACAATCATAATTATGGAGATACCTTCCCACCATAATATGCCAAAAATACTATAA--CGTCG
258 CCTTACAACCATAATTACGAAAAT-GCTTCCTACCATCATATGCCAAAAATACTATAATGCTTCA
* * * * * *
8602782 TCCTATAAAAATTACAAAAATA-CACTT-TATTATAATTTGCCAAAATTTCTATAATACCTTCTA
322 TCCTATCATAATTACGAAAATATCCCTTATATTATAATTTG-CAAAA-ATATATAATACCTTCTA
* * ** ** * * * * *
8602845 ACTATAATTACAAAAATA-CA-TTTTACTATAAT-TATAAAAATATTCTT-CAGTTATAATTAGT
385 ACCATAATTACGAAAATATCACTCATACTATAATGGCTAAAATTACTATTGCA-TTATAATTGGC
* * * *
8602906 TAAAATTATTATAATACACTCTAATTATAATTACAGAAAAATGC-CCTTTGATTGCTTCATATAA
449 TAAAATTATTATAATACACTCTAACTATAATTATAAAAAAAT-CACTTTTGATTGCTTCATATAA
** * *
8602970 TGCATC-TCTTACCATAATTACAAAAATACCT-TCATATTATAATTGGCCCAATTACTATAATA-
513 TGCATCTTC-TACCATAATTA-TGAAATATCTCTCATATTATAATTGGCCAAATTACTATAATAC
8603032 CA
576 CA
* * * *
8603034 GTTTAAGCATAATTACAAGAGTACCTTTTTTGATTGCTTCATAATTAGTTAATTACTCATTAAAC
1 -TTTAAGCATAATTACAAAAATACC-CTTTTGATTGCTTC---A-TA--T--TTACTCATTAAAT
* * *
8603099 TTTGACATCCATTAAATAATATAACATTAATTCCATTAGAAATGATCGTAATACCCTTTTAATTA
56 TTTAACATCCA-TAAATAATATAAAATTAATTCCATTAGAAATGATCATAATACCCTTTTAATTA
* * * * * * *
8603164 CTTAACAATTGAATTATATGTATTCAAATTGACTGTAATGCCCATCTTT-TATGAGTAAATAAAA
120 CTTGACAATTGAATTACATGCATCCAAATTGACTATAATACCCATTTTTCTATGAGTAAATAAAA
* * * * * * *
8603228 TTATTATAATGCCCTTTTAACATAAGTACTAAAACACCTCTCTT-ACTATAATTGTCTAAAATTA
185 TTACTATAATGCCCTCTTAACATAATTACTAAAATACCCCTCTTAAC-ATAATTATCCAAAATTA
** * * * * * ** * *
8603292 CTATAATACCCTTATAATCTTAATTATGGAAATGCCTTCCTACCATTGTATTCCAAAAATGCTAT
249 CTATAATGTCCTTACAACCATAATTACGAAAATG-CTTCCTACCATCATATGCCAAAAATACTAT
* * * * * *
8603357 AATGC-CCATCTTAACATAATTATGAAAATATCCCTTATATTATAATTTGTCAAAATTTCTATAA
313 AATGCTTCATCCTATCATAATTACGAAAATATCCCTTATATTATAATTTG-CAAAA-ATATATAA
* * ** * * ** * *
8603421 TACCTTTTAACCCATAGTTACGAAAAT-TC-CTGTTATTGTAATTACGAAAA-TACT-TTGGATA
376 TACCTTCTAA-CCATAATTACGAAAATATCACTCATACTATAATGGCTAAAATTACTATT-G-CA
* * *
8603482 TTATAATTGGCTAAAATTACTATATTACACTCTAACTATAATTATAAAAAAAGGTCA-TTTTCAT
438 TTATAATTGGCTAAAATTATTATAATACACTCTAACTATAATTATAAAAAAA--TCACTTTTGAT
* * * *
8603546 TGCTTCATGTAATGCATCTCCTACCATAATTATGAAA-ATACACATCATGTTATAATTGGCCAAA
501 TGCTTCATATAATGCATCTTCTACCATAATTATGAAATAT-CTC-TCATATTATAATTGGCCAAA
* *
8603610 TTACTATAATGCCC
564 TTACTATAATACCA
* ** * * *
8603624 TCTAAGTGTGATTACAAAAATACCCTTTTGATTGCTTCATATTTACTCATTGAATTTTAATATCC
1 TTTAAGCATAATTACAAAAATACCCTTTTGATTGCTTCATATTTACTCATTAAATTTTAACATCC
* * * *
8603689 ATACAACAGTATAAAATTAATTCTATTAGAAATTATCATAATACCCTTTTAATTACTTGACAATT
66 ATA-AATAATATAAAATTAATTCCATTAGAAATGATCATAATACCCTTTTAATTACTTGACAATT
* * * * *
8603754 GAATTACATGTATCCAAATTGACTATAACACCC-TTATTTTTATG-GTTAACTAAAATTACTATT
130 GAATTACATGCATCCAAATTGACTATAATACCCATT-TTTCTATGAG-TAAATAAAATTACTATA
* *
8603817 ATGCCCCTCTTAATATAATTACTAAAATACCCCTCTTAACATTA-TATCCAAAATTACTATAATG
193 ATG-CCCTCTTAACATAATTACTAAAATACCCCTCTTAACATAATTATCCAAAATTACTATAATG
*
8603881 TCCTTACAACCATAATTACGAAAATGCTATCCTACCATCATATGCCAAAATTACTATAATGCTTC
257 TCCTTACAACCATAATTACGAAAATGCT-TCCTACCATCATATGCCAAAAATACTATAATGCTTC
* * ** * *
8603946 -TCTTATCATAATTACGAAAATGTTTCTTATATTATAATTTACAAAAACTATGATAATACCATCT
321 ATCCTATCATAATTACGAAAATATCCCTTATATTATAATTTGCAAAAA-TAT-ATAATACCTTCT
* * * *
8604010 AACCATAATTACGAATATACCACTCATATTATAATGGGCTAAAATTATTATAATGCCCATTATAA
384 AACCATAATTACGAAAATATCACTCATACTATAAT-GGCTAAAATTACTAT--TG--CATTATAA
* * *
8604075 TGGGCTAAAATTATTATAATACCCAT-TAACCATAATTATAAAAAAATACACTTTTGATTGCTTC
444 TTGGCTAAAATTATTATAATACAC-TCTAACTATAATTATAAAAAAAT-CACTTTTGATTGCTTC
* * *
8604139 ATATAATGTC-TCTTCTACTATAATTATGAAATATCTCTCATATTATGATTGGCTAAAATTACTA
507 ATATAATG-CATCTTCTACCATAATTATGAAATATCTCTCATATTATAATTGGC-CAAATTACTA
8604203 TAATACCA
570 TAATACCA
* * * *
8604211 TTTACGCATAATTACAAAAATACTCTTTTGATTACTTCATAATTACTCATTAAATTTTAACATCC
1 TTTAAGCATAATTACAAAAATACCCTTTTGATTGCTTCATATTTACTCATTAAATTTTAACATCC
* ** * **
8604276 ATATAATAATATGAAATTAAACCCCTTAGAAATGATCATAACGCCCTTTTAATTACTTGACAATT
66 ATA-AATAATATAAAATTAATTCCATTAGAAATGATCATAATACCCTTTTAATTACTTGACAATT
* * * * * *
8604341 TACTTACATGCATCAAAATTGACTATAATGCCCATTTTTCTATGATTAACTAAAATTACTATAAT
130 GAATTACATGCATCCAAATTGACTATAATACCCATTTTTCTATGAGTAAATAAAATTACTATAAT
* * * * * * * *
8604406 GCCCCTTTTAACATAATTACTAAAAAACCCATTTTACCATAATT-GCTCAAAGTTACTACAATG-
195 G-CCCTCTTAACATAATTACTAAAATACCCCTCTTAACATAATTATC-CAAAATTACTATAATGT
* * * *
8604469 CCTTTACAACCATAATTACGAAAATGCCCTCCTACTATCATATGCCAAAATTA-TAATATTGCCT
258 CC-TTACAACCATAATTACGAAAATG-CTTCCTACCATCATATGCCAAAAATACT-ATAATG-CT
* * * *
8604533 T--TCCTACCATAATTACGAAAACATCCCTCATATTATAATTTGCTAAAATCACTATAATATCCT
319 TCATCCTATCATAATTACGAAAATATCCCTTATATTATAATTTGCAAAAAT-A-TATAATA-CCT
* *
8604596 T-TAACCATAATTATGAAAATATCACTCATACTATAATTGGCTAAAGTTACTAT
381 TCTAACCATAATTACGAAAATATCACTCATACTATAA-TGGCTAAAATTACTAT
8604649 AATACTCTCT
Statistics
Matches: 1314, Mismatches: 230, Indels: 125
0.79 0.14 0.07
Matches are distributed among these distances:
573 19 0.01
574 13 0.01
577 2 0.00
578 1 0.00
579 4 0.00
580 129 0.10
581 137 0.10
582 193 0.15
583 97 0.07
584 12 0.01
585 40 0.03
586 44 0.03
587 356 0.27
588 209 0.16
589 57 0.04
590 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.37
Consensus pattern (577 bp):
TTTAAGCATAATTACAAAAATACCCTTTTGATTGCTTCATATTTACTCATTAAATTTTAACATCC
ATAAATAATATAAAATTAATTCCATTAGAAATGATCATAATACCCTTTTAATTACTTGACAATTG
AATTACATGCATCCAAATTGACTATAATACCCATTTTTCTATGAGTAAATAAAATTACTATAATG
CCCTCTTAACATAATTACTAAAATACCCCTCTTAACATAATTATCCAAAATTACTATAATGTCCT
TACAACCATAATTACGAAAATGCTTCCTACCATCATATGCCAAAAATACTATAATGCTTCATCCT
ATCATAATTACGAAAATATCCCTTATATTATAATTTGCAAAAATATATAATACCTTCTAACCATA
ATTACGAAAATATCACTCATACTATAATGGCTAAAATTACTATTGCATTATAATTGGCTAAAATT
ATTATAATACACTCTAACTATAATTATAAAAAAATCACTTTTGATTGCTTCATATAATGCATCTT
CTACCATAATTATGAAATATCTCTCATATTATAATTGGCCAAATTACTATAATACCA
Found at i:8604603 original size:61 final size:60
Alignment explanation
Indices: 8604536--8604669 Score: 171
Period size: 61 Copynumber: 2.2 Consensus size: 60
8604526 ATTGCCTTTC
* * *
8604536 CTACCATAATTACGAAAACATCCCTCATATTATAATTTGCTAAAATCACTATAATA-TCCT
1 CTACCATAATTACGAAAACATCACTCATACTATAATTGGCTAAAATCACTATAATACT-CT
* * * * *
8604596 TTAACCATAATTATGAAAATATCACTCATACTATAATTGGCTAAAGTTACTATAATACTCT
1 CT-ACCATAATTACGAAAACATCACTCATACTATAATTGGCTAAAATCACTATAATACTCT
8604657 CTACCATAATTAC
1 CTACCATAATTAC
8604670 AAGAAATGTC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
60 11 0.18
61 50 0.81
62 1 0.02
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.34
Consensus pattern (60 bp):
CTACCATAATTACGAAAACATCACTCATACTATAATTGGCTAAAATCACTATAATACTCT
Found at i:8613962 original size:21 final size:21
Alignment explanation
Indices: 8613938--8613987 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
8613928 TACTTTTTAT
*
8613938 TTATAATAATAATTTTTTACG
1 TTATAATAATAATTATTTACG
*
8613959 TTATCAAT-TTAATTATTTACG
1 TTAT-AATAATAATTATTTACG
*
8613980 TTACAATA
1 TTATAATA
8613988 GTATGTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 3 0.12
21 18 0.75
22 3 0.12
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (21 bp):
TTATAATAATAATTATTTACG
Found at i:8615331 original size:16 final size:16
Alignment explanation
Indices: 8615309--8615341 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
8615299 GTTAATATGT
8615309 ATTTTTTT-ATTTATA
1 ATTTTTTTAATTTATA
8615324 ATTTTTTTAATTTATA
1 ATTTTTTTAATTTATA
8615340 AT
1 AT
8615342 AATAATTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTTTAATTTATA
Found at i:8615827 original size:21 final size:21
Alignment explanation
Indices: 8615755--8615828 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
8615745 TATTTAAAAT
* *
8615755 TATTTTTTTGT-TTGTAATAA
1 TATTTTTTTATATTCTAATAA
* *
8615775 TAGTTTTTTTATATTGCCAACTCA
1 TA-TTTTTTTATATT-CTAA-TAA
*
8615799 -A-TTATTTATATTCTAATAA
1 TATTTTTTTATATTCTAATAA
8615818 TATTTTTTTAT
1 TATTTTTTTAT
8615829 GCTTGTTACC
Statistics
Matches: 40, Mismatches: 8, Indels: 11
0.68 0.14 0.19
Matches are distributed among these distances:
19 2 0.05
20 6 0.15
21 25 0.62
22 2 0.05
23 3 0.08
24 2 0.05
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.59
Consensus pattern (21 bp):
TATTTTTTTATATTCTAATAA
Found at i:8616093 original size:438 final size:436
Alignment explanation
Indices: 8615518--8616451 Score: 1348
Period size: 438 Copynumber: 2.1 Consensus size: 436
8615508 TTTTTACATT
*
8615518 AACACTTAGTTTTTAATTGAATTATTTTTTATTTATAATACTAATTTTTTTACGTTACCAATTTA
1 AACACTTA-TTTTTTATTGAATT-TTTTTTATTTATAATACTAATTTTTTTACGTTACCAATTTA
* * * *
8615583 TTACATTTTCGTAATATTTTTTTATATTTGTTGTTACTTTTCATTATGTTTAGAATTATTACTAT
64 TTACATTTTCATAATATTTTTTTATATTTATTGTTACTTTTCATTATGTTTAGAATTATTACAAA
* * *
8615648 TTTTTTCTTAAGGCATAACGATACTTCTAATTATTTTAAATTAAATAATATC-AATTTTATAACT
129 ATTTTTCTTAAGGCATAACAATACTTCTAACTATTTTAAATTAAATAATA-CAAATTTTATAACT
*
8615712 ATTCTCATCGA-TTTACATTAACTTTT-AACTTTTTATTTAAAATTATTTTTTTGTTTGTAATAA
193 ATTCTCA-CCATTTTACATTAACTTTTAAACTTTTTATTTAAAATTA-TTTTTTGTTTGTAATAA
8615775 TAGTTTTTTTATATTGCCAACTCAATTATTTATATTCTAATAATATTTTTTT-A-TGCTTGTTAC
256 TAGTTTTTTTATATTGCCAACTCAATTATTTATATTCTAATAATATTTTTTTAACTG-TTGTTAC
* *
8615838 CTTTCAATACATTTATAAGTATTACAACTTTTTTTCTTAAAGGTGTTACGATACTTCTAATCATT
320 CTTTCAATACATTTAGAAGTATTACAAC-TTTGTT-TTAAAGGTGTTACGATACTTCTAATCATT
*
8615903 TTACGTC-AAATAATACCAATTTTA-TGGTTACTCTTA-CTTTTTTTTTTTATACA
383 TTACG-CAAAATAATACCAATTTTACT-ATTACTCTTACCTTTTTTTTTTTATACA
*
8615956 AACACTTATTTTTTTATTGAATTTTTTTTATTTATAATACTAATTTTTTTACTTTACCAATTTAT
1 AACACTTA-TTTTTTATTGAATTTTTTTTATTTATAATACTAATTTTTTTACGTTACCAATTTAT
*
8616021 TACA-TTTCAATAATATTTTTTTTATATTTATTGTTATTTTTCATTATGTTTAGAATTATTACAA
65 TACATTTTC-ATAATA-TTTTTTTATATTTATTGTTACTTTTCATTATGTTTAGAATTATTACAA
* * * * * *
8616085 AATTTTTCTTAAGGTATAATAATACTTTTAACTATTTTATATTAAATAATACAAATTTTATGATT
128 AATTTTTCTTAAGGCATAACAATACTTCTAACTATTTTAAATTAAATAATACAAATTTTATAACT
*
8616150 ATTCTCACCATTTTACATTAACTTTTAAATTTTTTATTTAAAATTATTTTTTGTTTGTAATAATA
193 ATTCTCACCATTTTACATTAACTTTTAAACTTTTTATTTAAAATTATTTTTTGTTTGTAATAATA
* *
8616215 GTTTTTTTATATTGCCAACTTAATTATTTATATTTTAATAATATTTTTTTACACTTGTTGTTACC
258 GTTTTTTTATATTGCCAACTCAATTATTTATATTCTAATAATATTTTTTTA-AC-TGTTGTTACC
* *
8616280 TTTCAATACGTTTAGAAGTATTACAACTTTGTTTTAAAGGTGTTATGATACTTCTAATCATTTTA
321 TTTCAATACATTTAGAAGTATTACAACTTTGTTTTAAAGGTGTTACGATACTTCTAATCATTTTA
* *
8616345 CGCAAAATAATATCAATTTTACTATTACTCTTACCTTTTTTTTTTTATACT
386 CGCAAAATAATACCAATTTTACTATTACTCTTACCTTTTTTTTTTTATACA
* * * * *
8616396 AATACTTATTTTTTAGTTTAGAATTATTATTATTTATAATAATAA-TCTTTTACGTT
1 AACACTTATTTTTTA--TT-GAATTTTTTTTATTTATAATACTAATTTTTTTACGTT
8616452 GCTAAAAATA
Statistics
Matches: 447, Mismatches: 34, Indels: 27
0.88 0.07 0.05
Matches are distributed among these distances:
436 4 0.01
437 53 0.12
438 209 0.47
439 83 0.19
440 30 0.07
441 44 0.10
442 24 0.05
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.53
Consensus pattern (436 bp):
AACACTTATTTTTTATTGAATTTTTTTTATTTATAATACTAATTTTTTTACGTTACCAATTTATT
ACATTTTCATAATATTTTTTTATATTTATTGTTACTTTTCATTATGTTTAGAATTATTACAAAAT
TTTTCTTAAGGCATAACAATACTTCTAACTATTTTAAATTAAATAATACAAATTTTATAACTATT
CTCACCATTTTACATTAACTTTTAAACTTTTTATTTAAAATTATTTTTTGTTTGTAATAATAGTT
TTTTTATATTGCCAACTCAATTATTTATATTCTAATAATATTTTTTTAACTGTTGTTACCTTTCA
ATACATTTAGAAGTATTACAACTTTGTTTTAAAGGTGTTACGATACTTCTAATCATTTTACGCAA
AATAATACCAATTTTACTATTACTCTTACCTTTTTTTTTTTATACA
Found at i:8616145 original size:888 final size:886
Alignment explanation
Indices: 8614389--8616145 Score: 1955
Period size: 888 Copynumber: 2.0 Consensus size: 886
8614379 TAATTTTATG
* *
8614389 ATTATTCACACATTTTTTATGTTAACACTTATATTTATGTTTAGAATTTTTTTTTATTTATAATA
1 ATTATTCACACATTTTTTATGTTAACACTTATATTTATATTTAGAATTTTTTTTAATTTATAATA
* *
8614454 ATAATTTTTTATGTTGTCAATTTAATTATTTACGTTACAATAAAATCTGTTATGCTTATTCCTAT
66 ATAATTTTTTATGTTGTCAACTTAATTATTTACGTTACAATAAAATCTGTTACGCTTATTCCTAT
* *
8614519 ATTTTATTATATTTAGAATTATCACAACTTTTTCTTAAGTATTATGAAACTTCAAATATATTTTA
131 ATTTTATTATATTTAAAATTATCACAAATTTTTCTTAAGTATTATGAAACTTCAAATATATTTTA
* * * *
8614584 CCTCAAATTATACCAATTTCACAATTAATTTCATCTTTTTACTTTAACACTTATTTTTTAATTTA
196 CCTCAAATGATACCAATTTAACAATTAATTTCATCTTTTTACATTAACACTTAGTTTTTAATTTA
* *
8614649 GAATTATTTTTATTCATAATACTAATTTTTTTATGTTACAAAATTATTTCATTTCAATAATATCA
261 GAATTATTTTTATTCATAATACTAATTTTTTTACGTTACAAAATTATTACATTTCAATAATATCA
* * ** *
8614714 TTTTACGTTTGTTGTTACTTTTTATTACATTTAAAATTATTACAATTTTTTTTAAAGGTGTAATG
326 TTTTACATTTGTTGTTACTTTTCATTACATTTAAAATTATTACAATTTTTTTTAAAGGCATAACG
* * * * * **
8614779 ATACTTTTAAAAATTTTACATAAAATAATAATAATTTTACGATTATTCTCATTATTTTATGTTAA
391 ATACTTCTAAAAATTTTAAATAAAATAATAATAATTTTACAACTATTCTCATGATTTTACATTAA
* * *
8614844 CTCTTATTTTTTGTTTAAATTTTTTTTATTTGTAATAATAATTTTTTTTCATTACCAACTTAATT
456 CTCTTACTTTTTATTTAAATTTTTTTTATTTGTAATAATAATTTTTTTTCATTACCAACTCAATT
* * ** * ** * *
8614909 ATTTATGTTATGATAATTTTTTTATGCTTATTGTTATTTTTCATTATGTTTAGAATTATTATAAT
521 ATTTATATTATAATAATTTTTTTATGC-T-TTGTTACCTTTCAATACATTTAGAAGTATTACAAT
*
8614974 TTTTTCTTAAAGGTATTACGACACTTCTAACTATTTTACGTCAAATAATATCAATTTTATGATTA
584 TTTTTCTTAAAGGTATTACGACACTTCTAACTATTTTACGTCAAATAATACCAATTTTATGATTA
** * *
8615039 TTCTCATCTTTTTTATATTAACAGTTTTTTTTTGTTTAAAATTATTATTTATTTATAATAATAAT
649 TTCTCATCTTTTTTATACAAACACTTTTTTTTTGATTAAAATTATTATTTATTTATAATAATAAT
8615104 TCTTTTATATTGTCAAAAATATTATTAATGTTACAATAATATTTTTTTATACTAGTCTCTACTTT
714 TCTTTTATATTGTCAAAAATATTATTAATGTTACAATAATATTTTTTTATACTAGTCTCTACTTT
* * * *
8615169 TTATTTATGTTTAGAATTATTACACTAAATGATATCAATTTTACAAATATTTTTATCATTTTACC
779 TTATTTATGTTTAGAATTATTACAC-AAATGATATCAAGTATACAAATACTTTTAACATTTTA-C
* * *
8615234 TTATTAGATTATAACATATTTTATTATAAATAATTCCAATTTTTCA
842 -TATTAAATAATAACAAATTTTATTATAAATAATTCCAATTTTTCA
* * * * *
8615280 ATTATTCTCACA-TTTTTATGTTAATA-TGTATTTTTTTATTTATAA-TTTTTTTAATTTATAAT
1 ATTATTCACACATTTTTTATGTTAACACT-TATATTTATATTTAGAATTTTTTTTAATTTATAAT
** * * *
8615342 AATAATTTGTTTATGTTGTCAACTT-A-TATTTACGTTGTAATAAAATCTTTTACGCTTGTTCTT
65 AATAATTT-TTTATGTTGTCAACTTAATTATTTACGTTACAATAAAATCTGTTACGCTTATTCCT
* * * * *
8615405 ATATTTTATTATGTTTAAAATTATTACAAATTTTTCTTAAGGTATTATGATACTTCTAATTTATT
129 ATATTTTATTATATTTAAAATTATCACAAATTTTTCTTAA-GTATTATGAAACTTCAAATATATT
* **
8615470 TTATGC-CAAATGATATTAATTTTAAC-ATT-ATTCTCA-CATTTTTACATTAACACTTAGTTTT
193 TTA-CCTCAAATGATACCAA-TTTAACAATTAATT-TCATC-TTTTTACATTAACACTTAGTTTT
* * *
8615531 TAA-TT-GAATTATTTTTTATTTATAATACTAATTTTTTTACGTTACCAATTTATTACATTTTC-
254 TAATTTAGAATTA-TTTTTATTCATAATACTAATTTTTTTACGTTACAAAATTATTACA-TTTCA
* ** * ** * * *
8615593 GTAATATTTTTTTATATTTGTTGTTACTTTTCATTATGTTTAGAATTATTACTATTTTTTTCTTA
317 ATAATATCATTTTACATTTGTTGTTACTTTTCATTACATTTAAAATTATTACAATTTTTTT-TAA
** * *
8615658 AGGCATAACGATACTTCTAATTATTTTAAATTAAATAAT-ATCAATTTTATAACTATTCTCATCG
381 AGGCATAACGATACTTCTAAAAATTTTAAATAAAATAATAAT-AATTTTACAACTATTCTCAT-G
* * *
8615722 A-TTTACATTAACTTTTAACTTTTTATTTAAAATTATTTTTTTGTTTGTAATAATAGTTTTTTTA
444 ATTTTACATTAACTCTT-ACTTTTTATTT-AAA-T-TTTTTTTATTTGTAATAATAATTTTTTT-
* *
8615786 T-ATTGCCAACTCAATTATTTATATTCTAATAATATTTTTTTATGC-TTGTTACCTTTCAATACA
504 TCATTACCAACTCAATTATTTATATTATAAT-A-ATTTTTTTATGCTTTGTTACCTTTCAATACA
* * *
8615849 TTTATAAGTATTACAACTTTTTTTCTTAAAGGTGTTACGATACTTCTAA-TCATTTTACGTCAAA
567 TTTAGAAGTATTACAA--TTTTTTCTTAAAGGTATTACGACACTTCTAACT-ATTTTACGTCAAA
* ** * *
8615913 TAATACCAATTTTATGGTTACTCTTACTTTTTTTTTTTATACAAACACTTATTTTTTT-ATT-GA
629 TAATACCAATTTTATGATTA---TT-CTCATCTTTTTTATACAAACACTT-TTTTTTTGATTAAA
* * **
8615976 ATT-TTTTTTATTTATAATACTAATT-TTTT-TACTT-T-ACCAAT-TTATTACAT-TT-CAATA
689 ATTATTATTTATTTATAATAATAATTCTTTTATA-TTGTCAAAAATATTATTA-ATGTTACAATA
* * * * *
8616033 ATATTTTTTTTATATTTATTGT-TA-TTTTTCA-TTATGTTTAGAATTATTACA-AAAT-TTTTC
752 ATA-TTTTTTTATA-CTAGTCTCTACTTTTT-ATTTATGTTTAGAATTATTACACAAATGATATC
8616093 TTAAGGTATA-ATAATACTTTTAACTATTTTA-TATTAAATAAT-ACAAATTTTAT
814 --AA-GTATACA-AATACTTTTAAC-ATTTTACTATTAAATAATAACAAATTTTAT
8616146 GATTATTCTC
Statistics
Matches: 725, Mismatches: 104, Indels: 77
0.80 0.11 0.08
Matches are distributed among these distances:
887 6 0.01
888 179 0.25
889 169 0.23
890 60 0.08
891 60 0.08
892 54 0.07
893 61 0.08
894 65 0.09
895 18 0.02
896 20 0.03
897 6 0.01
898 20 0.03
899 7 0.01
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.53
Consensus pattern (886 bp):
ATTATTCACACATTTTTTATGTTAACACTTATATTTATATTTAGAATTTTTTTTAATTTATAATA
ATAATTTTTTATGTTGTCAACTTAATTATTTACGTTACAATAAAATCTGTTACGCTTATTCCTAT
ATTTTATTATATTTAAAATTATCACAAATTTTTCTTAAGTATTATGAAACTTCAAATATATTTTA
CCTCAAATGATACCAATTTAACAATTAATTTCATCTTTTTACATTAACACTTAGTTTTTAATTTA
GAATTATTTTTATTCATAATACTAATTTTTTTACGTTACAAAATTATTACATTTCAATAATATCA
TTTTACATTTGTTGTTACTTTTCATTACATTTAAAATTATTACAATTTTTTTTAAAGGCATAACG
ATACTTCTAAAAATTTTAAATAAAATAATAATAATTTTACAACTATTCTCATGATTTTACATTAA
CTCTTACTTTTTATTTAAATTTTTTTTATTTGTAATAATAATTTTTTTTCATTACCAACTCAATT
ATTTATATTATAATAATTTTTTTATGCTTTGTTACCTTTCAATACATTTAGAAGTATTACAATTT
TTTCTTAAAGGTATTACGACACTTCTAACTATTTTACGTCAAATAATACCAATTTTATGATTATT
CTCATCTTTTTTATACAAACACTTTTTTTTTGATTAAAATTATTATTTATTTATAATAATAATTC
TTTTATATTGTCAAAAATATTATTAATGTTACAATAATATTTTTTTATACTAGTCTCTACTTTTT
ATTTATGTTTAGAATTATTACACAAATGATATCAAGTATACAAATACTTTTAACATTTTACTATT
AAATAATAACAAATTTTATTATAAATAATTCCAATTTTTCA
Found at i:8616304 original size:221 final size:217
Alignment explanation
Indices: 8615311--8616726 Score: 838
Period size: 224 Copynumber: 6.5 Consensus size: 217
8615301 TAATATGTAT
* * * *
8615311 TTTTTTATTTATAATT-TTTTTAATTTATAATAATAATTTGTTTATGTTGTCAACTTA-TATTTA
1 TTTTTTATTTAGAATTATTTTTTATTTATAATAATAATTTTTTTATGTTGCCAA-TTATTATTTA
* * * * * * ** * * * * *
8615374 CGTTGTAATAA-AATCTTTTACGCTTGTTCTTATATTTTATTATGTTTAAAATTATTAC-AAATT
65 CATTTTAATAATATTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTATTACAAAATT
* * * * **
8615437 TTTCTTAAGGTATTATGATACTTCTAATTTATTTTATGCCAAATGATATTAATTTTAACATTATT
130 TTTCTTAAGGTATTATGATACTTCTAA--TATTTTACGTCAAATAATA-CAATTTTATGATTATT
**
8615502 CTCA-CATTTTTACATTAACACTT--A
192 CTCACCA-TTTTACATTAACTTTTAAA
* * * * *
8615526 GTTTTTAATT-GAATTATTTTTTATTTATAATACTAATTTTTTTACGTTACCAA-T-TTA-TTAC
1 TTTTTTATTTAGAATTATTTTTTATTTATAATAATAATTTTTTTATGTTGCCAATTATTATTTAC
** * * * * * * * **
8615587 ATTTTCGTAATATTTTTTTATATTTGTTGTTACTTTTCATTATGTTTAGAATTATTACTATTTTT
66 ATTTTAATAATATTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTATTACAAAATTT
* * * ** * * *
8615652 TTCTTAAGGCATAACGATACTTCTAATTATTTTAAATTAAATAATATCAATTTTATAACTATTCT
131 TTCTTAAGGTATTATGATACTTCTAA-TATTTTACGTCAAATAATA-CAATTTTATGATTATTCT
*
8615717 CATCGA-TTTACATTAACTTTT-AA
194 CA-CCATTTTACATTAACTTTTAAA
* * * * * * *
8615740 CTTTTTATTTAAAATTATTTTTTTGTTTGTAATAATAGTTTTTTTATATTGCCAACTCAATTATT
1 TTTTTTATTTAGAATTA-TTTTTTATTTATAATAATAATTTTTTTATGTTGCCAA-T-TATTATT
* * * *
8615805 TATATTCTAATAATATTTTTTT--A--TGCTTGTTACCTTTCAATACATTTATAAGTATTACAAC
63 TACATTTTAATAATATTTTTTTACACTTG-TTGTTACCTTTCAATACGTTTAGAAGTATTACAA-
** * * *
8615866 TTTTTTTCTTAAAGGTGTTACGATACTTCTAATCATTTTACGTCAAATAATACCAATTTTATGGT
126 AATTTTTCTT-AAGGTATTATGATACTTCTAAT-ATTTTACGTCAAATAATA-CAATTTTATGAT
* * ** *** *
8615931 TACTCTTACTTTTTTTTTTTATAC---AAACA
188 TATTCTCACCATTTTACATTA-ACTTTTAA-A
* *
8615960 CTTATTTT-TTTATTGAATT-TTTTTTATTTATAATACTAATTTTTTTACT-TTACCAA-T-TTA
1 -TT-TTTTATTTA--GAATTATTTTTTATTTATAATAATAATTTTTTTA-TGTTGCCAATTATTA
* * * * ** * * *
8616020 -TTACATTTCAATAATATTTTTTTTATATTTATTGTTATTTTTCATTATGTTTAGAATTATTACA
61 TTTACATTTTAATAATA-TTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTATTACA
* * * ** *
8616084 AAATTTTTCTTAAGGTATAATAATACTTTTAACTATTTTATATTAAATAATACAAATTTTATGAT
125 AAATTTTTCTTAAGGTATTATGATACTTCTAA-TATTTTACGTCAAATAATAC-AATTTTATGAT
8616149 TATTCTCACCATTTTACATTAACTTTTAAA
188 TATTCTCACCATTTTACATTAACTTTTAAA
* * * * *
8616179 TTTTTTATTTAAAATTATTTTTTGTTTGTAATAATAGTTTTTTTATATTGCCAACTTAATTATTT
1 TTTTTTATTTAGAATTATTTTTTATTTATAATAATAATTTTTTTATGTTGCCAA-TT-ATTATTT
* *
8616244 ATATTTTAATAATATTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTATTAC-AACT
64 ACATTTTAATAATATTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTATTACAAAAT
*
8616308 TTGTT-TTAAAGGTGTTATGATACTTCTAATCATTTTACG-CAAAATAATATCAATTTTACT-AT
129 TT-TTCTT-AAGGTATTATGATACTTCTAAT-ATTTTACGTC-AAATAATA-CAATTTTA-TGAT
* * * *** ** *
8616370 TACTCTTACCTTTTTTTTTTTATACTAATACTTA
188 TATTCTCACC-ATTTTACATTA-ACTTTTA--AA
* * * * *
8616404 TTTTTTAGTTTAGAATTA-TTATTATTTATAATAATAA-TCTTTTACGTTGCTAAAAATATTATT
1 TTTTTTA-TTTAGAATTATTTTTTATTTATAATAATAATTTTTTTATGTTGC--CAATTATTATT
* ** * *
8616467 TATATTACAATAATATTTTTTTGCACTTGTTGTTACCTTTCAATACGTTTAGAAGTATTAC-AAC
63 TACATTTTAATAATATTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTATTACAAAA
*
8616531 TTTGTT-TTAAAGGTGTTATGATACTTCTAATCATTTTACG-CAAAATAATATCAATTTTACT-A
128 TTT-TTCTT-AAGGTATTATGATACTTCTAAT-ATTTTACGTC-AAATAATA-CAATTTTA-TGA
* * * *** ** *
8616593 TTACTCTTACCTTTTCTTTTTTATACTAATACTTA
187 TTATTCTCACCATTT-TACATTA-ACTTTTA--AA
* * * * *
8616628 TTTTTTAGTTTAGAATTA-TTATTATTTATAATAATAA-TCTTTTACGTTGCTAAAAATATTATT
1 TTTTTTA-TTTAGAATTATTTTTTATTTATAATAATAATTTTTTTATGTTGC--CAATTATTATT
* ** * *
8616691 TATATTACAATAATATTTTTTTGCACTTGTTCTTAC
63 TACATTTTAATAATATTTTTTTACACTTGTTGTTAC
8616727 TTTAAATTAT
Statistics
Matches: 977, Mismatches: 165, Indels: 109
0.78 0.13 0.09
Matches are distributed among these distances:
212 10 0.01
213 85 0.09
214 40 0.04
215 45 0.05
216 48 0.05
217 49 0.05
218 88 0.09
219 26 0.03
220 95 0.10
221 148 0.15
222 28 0.03
223 13 0.01
224 267 0.27
225 24 0.02
226 11 0.01
ACGTcount: A:0.31, C:0.10, G:0.06, T:0.53
Consensus pattern (217 bp):
TTTTTTATTTAGAATTATTTTTTATTTATAATAATAATTTTTTTATGTTGCCAATTATTATTTAC
ATTTTAATAATATTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTATTACAAAATTT
TTCTTAAGGTATTATGATACTTCTAATATTTTACGTCAAATAATACAATTTTATGATTATTCTCA
CCATTTTACATTAACTTTTAAA
Found at i:8616496 original size:224 final size:224
Alignment explanation
Indices: 8615799--8616726 Score: 983
Period size: 224 Copynumber: 4.2 Consensus size: 224
8615789 TGCCAACTCA
* *
8615799 ATTATTTATATT-CTAATAATATTTTTTT--A--TGCTTGTTACCTTTCAATACATTTATAAGTA
1 ATTATTTATATTAC-AATAATATTTTTTTACACTTG-TTGTTACCTTTCAATACGTTTAGAAGTA
* * *
8615859 TTACAACTTTTTTTCTTAAAGGTGTTACGATACTTCTAATCATTTTACGTC-AAATAATACCAAT
64 TTACAAC-TTTGTTCTTAAAGGTGTTATGATACTTCTAATCATTTTACG-CAAAATAATATCAAT
* * * * *
8615923 TTTATGGTTACTCTTA-CTTTTTTTTTTTATACAAACACTTATTTTTT-TATT-GAATTTTTTTT
127 TTTATGATTACTCTTACCTTTTTTTTTTTATACTAATACTTATTTTTTAT-TTAGAATTATTATT
* * **
8615985 ATTTATAATACTAATTTTTTTAC-TT--TACCAAT
191 ATTTATAATAATAA-TCTTTTACGTTGCTAAAAAT
* * * * * ** * * *
8616017 -TTA-TTACATTTCAATAATATTTTTTTTATATTTATTGTTATTTTTCATTATGTTTAGAATTAT
1 ATTATTTATATTACAATAATA-TTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTAT
* * * * * ****
8616080 TACAAAATTT-TTCTT-AAGGTATAATAATACTTTTAA-CTATTTTATATTAAATAATA-CAAAT
65 TAC-AACTTTGTTCTTAAAGGTGTTATGATACTTCTAATC-ATTTTACGCAAAATAATATC-AAT
* * * *** ** * * *
8616141 TTTATGATTATTCTCACC-ATTTTACATTA-ACTTTTA--AATTTTTTATTTAAAATTATTTTTT
127 TTTATGATTACTCTTACCTTTTTTTTTTTATACTAATACTTATTTTTTATTTAGAATTA-TTATT
* * * * ** * **
8616202 GTTTGTAATAATAGTTTTTTTATATTGC-CAACTT
191 ATTTATAATAATA-ATCTTTTACGTTGCTAAAAAT
**
8616236 AATTATTTATATTTTAATAATATTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTAT
1 -ATTATTTATATTACAATAATATTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTAT
8616301 TACAACTTTGTT-TTAAAGGTGTTATGATACTTCTAATCATTTTACGCAAAATAATATCAATTTT
65 TACAACTTTGTTCTTAAAGGTGTTATGATACTTCTAATCATTTTACGCAAAATAATATCAATTTT
8616365 ACT-ATTACTCTTACCTTTTTTTTTTTATACTAATACTTATTTTTTAGTTTAGAATTATTATTAT
130 A-TGATTACTCTTACCTTTTTTTTTTTATACTAATACTTATTTTTTA-TTTAGAATTATTATTAT
8616429 TTATAATAATAATCTTTTACGTTGCTAAAAAT
193 TTATAATAATAATCTTTTACGTTGCTAAAAAT
*
8616461 ATTATTTATATTACAATAATATTTTTTTGCACTTGTTGTTACCTTTCAATACGTTTAGAAGTATT
1 ATTATTTATATTACAATAATATTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTATT
8616526 ACAACTTTGTT-TTAAAGGTGTTATGATACTTCTAATCATTTTACGCAAAATAATATCAATTTTA
66 ACAACTTTGTTCTTAAAGGTGTTATGATACTTCTAATCATTTTACGCAAAATAATATCAATTTTA
*
8616590 CT-ATTACTCTTACCTTTTCTTTTTTATACTAATACTTATTTTTTAGTTTAGAATTATTATTATT
131 -TGATTACTCTTACCTTTTTTTTTTTATACTAATACTTATTTTTTA-TTTAGAATTATTATTATT
8616654 TATAATAATAATCTTTTACGTTGCTAAAAAT
194 TATAATAATAATCTTTTACGTTGCTAAAAAT
* *
8616685 ATTATTTATATTACAATAATATTTTTTTGCACTTGTTCTTAC
1 ATTATTTATATTACAATAATATTTTTTTACACTTGTTGTTAC
8616727 TTTAAATTAT
Statistics
Matches: 592, Mismatches: 86, Indels: 58
0.80 0.12 0.08
Matches are distributed among these distances:
215 9 0.02
216 18 0.03
217 38 0.06
218 55 0.09
219 8 0.01
220 35 0.06
221 94 0.16
222 24 0.04
223 5 0.01
224 271 0.46
225 26 0.04
226 9 0.02
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.52
Consensus pattern (224 bp):
ATTATTTATATTACAATAATATTTTTTTACACTTGTTGTTACCTTTCAATACGTTTAGAAGTATT
ACAACTTTGTTCTTAAAGGTGTTATGATACTTCTAATCATTTTACGCAAAATAATATCAATTTTA
TGATTACTCTTACCTTTTTTTTTTTATACTAATACTTATTTTTTATTTAGAATTATTATTATTTA
TAATAATAATCTTTTACGTTGCTAAAAAT
Found at i:8618238 original size:23 final size:23
Alignment explanation
Indices: 8618203--8618246 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
8618193 TATGATTTAA
*
8618203 TTTAAAATTAATA-AAATATTATT
1 TTTAAAATAAATATAAA-ATTATT
*
8618226 TTTAATATAAATATAAAATTA
1 TTTAAAATAAATATAAAATTA
8618247 AATACATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.83
24 3 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TTTAAAATAAATATAAAATTATT
Found at i:8618273 original size:32 final size:30
Alignment explanation
Indices: 8618230--8618290 Score: 95
Period size: 32 Copynumber: 2.0 Consensus size: 30
8618220 ATTATTTTTA
8618230 ATATAAATATAAAATTAAATACATATAATTAT
1 ATATAAATATAAAATTAAATA-AT-TAATTAT
*
8618262 ATATAATTATAAAATTAAATAATTAATTA
1 ATATAAATATAAAATTAAATAATTAATTA
8618291 AAAAATAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 6 0.21
31 2 0.07
32 20 0.71
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (30 bp):
ATATAAATATAAAATTAAATAATTAATTAT
Found at i:8618285 original size:16 final size:16
Alignment explanation
Indices: 8618227--8618303 Score: 56
Period size: 16 Copynumber: 4.8 Consensus size: 16
8618217 AATATTATTT
*
8618227 TTAATATAAATATAAAA
1 TTAA-ATAATTATAAAA
8618244 TTAAATACA-TAT--AA
1 TTAAATA-ATTATAAAA
8618258 TTATATATAATTATAAAA
1 TTA-A-ATAATTATAAAA
*
8618276 TTAAATAATTAATTAAA
1 TTAAATAATT-ATAAAA
8618293 --AAATAATTATA
1 TTAAATAATTATA
8618304 TATATATATA
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
14 7 0.14
15 10 0.20
16 18 0.35
17 11 0.22
18 5 0.10
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (16 bp):
TTAAATAATTATAAAA
Found at i:8625189 original size:26 final size:25
Alignment explanation
Indices: 8625140--8625187 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
8625130 AATAATTGAT
8625140 ATAAAAATTTATTTACTAAAAAATA
1 ATAAAAATTTATTTACTAAAAAATA
*
8625165 ATAAAATTTTAATTTA-TAAAAAA
1 ATAAAAATTT-ATTTACTAAAAAA
8625188 ATTATATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (25 bp):
ATAAAAATTTATTTACTAAAAAATA
Found at i:8640983 original size:24 final size:23
Alignment explanation
Indices: 8640955--8640999 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
8640945 GAAAATTGAG
8640955 AGAAAAAGAAAGAAAAGAAAAGCC
1 AGAAAAAGAAAG-AAAGAAAAGCC
**
8640979 AGAAAAAGGTAGAAAGAAAAG
1 AGAAAAAGAAAGAAAGAAAAG
8641000 AAAGAAGGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.69, C:0.04, G:0.24, T:0.02
Consensus pattern (23 bp):
AGAAAAAGAAAGAAAGAAAAGCC
Found at i:8650199 original size:21 final size:22
Alignment explanation
Indices: 8650165--8650205 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8650155 GGTTGGGCTT
8650165 GGTGAGAGACGGAGGCGGCGGC
1 GGTGAGAGACGGAGGCGGCGGC
*
8650187 GGTGA-AGGCGGAGGCGGCG
1 GGTGAGAGACGGAGGCGGCG
8650206 ATGACGGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.17, G:0.61, T:0.05
Consensus pattern (22 bp):
GGTGAGAGACGGAGGCGGCGGC
Found at i:8652544 original size:22 final size:23
Alignment explanation
Indices: 8652514--8652556 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
8652504 AAAATTTTAT
*
8652514 TTTATTTTAGGAAAAATTAATGC
1 TTTATTTTAAGAAAAATTAATGC
8652537 TTTA-TTTAAGAAAAATTAAT
1 TTTATTTTAAGAAAAATTAAT
8652557 ATTTCAACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.44
Consensus pattern (23 bp):
TTTATTTTAAGAAAAATTAATGC
Found at i:8652602 original size:59 final size:59
Alignment explanation
Indices: 8652537--8652913 Score: 333
Period size: 59 Copynumber: 6.6 Consensus size: 59
8652527 AAATTAATGC
* *
8652537 TTTATTTAAGAAAAATTAATATTTCAACTTTTCCTCAAAATATTTTTTTTGAAATATTT
1 TTTATTTAAGAAAAATTGATATTTCAACTTTTCCTCAAAACATTTTTTTTGAAATATTT
* * ** **
8652596 TTTATTTAAGAAAAATTAATACTTCTTCTTTTCCTCAAAACA--TTTTTTGAGGTATTTT
1 TTTATTTAAGAAAAATTGATATTTCAACTTTTCCTCAAAACATTTTTTTTGAAATA-TTT
* * *
8652654 TTTATTTAA-AGAAAATTGATATTTCAA-TATTTTCT-TAAA-ATTTTTTTTGAAATAATT
1 TTTATTTAAGA-AAAATTGATATTTCAACT-TTTCCTCAAAACATTTTTTTTGAAATATTT
* ** * ** *
8652711 TTTA--TATG---AA--GATCCTTCAATTTTTTTTCAAAACA-T-TTTTTGAAATTTTTT
1 TTTATTTAAGAAAAATTGATATTTCAACTTTTCCTCAAAACATTTTTTTTGAAA-TATTT
* * *
8652762 TTTATTTAAGGAAAATTGATA-TTCAACTTTTCCTTAAAACATTTTTTTTGAAATAAAATT
1 TTTATTTAAGAAAAATTGATATTTCAACTTTTCCTCAAAACATTTTTTTTGAAAT--ATTT
**
8652822 TTTATTTGTGAAAAATTGATACTTT-AACTTTTCCTCAAAACA-TTTTTTTGAAATATTT
1 TTTATTTAAGAAAAATTGATA-TTTCAACTTTTCCTCAAAACATTTTTTTTGAAATATTT
8652880 TCTTATTTAA-AAAAATTTGATATTTCAACTTTTC
1 T-TTATTTAAGAAAAA-TTGATATTTCAACTTTTC
8652914 TGTAAAATAT
Statistics
Matches: 255, Mismatches: 37, Indels: 52
0.74 0.11 0.15
Matches are distributed among these distances:
50 22 0.09
51 12 0.05
52 3 0.01
53 3 0.01
55 2 0.01
56 3 0.01
57 37 0.15
58 56 0.22
59 67 0.26
60 32 0.13
61 16 0.06
62 2 0.01
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.51
Consensus pattern (59 bp):
TTTATTTAAGAAAAATTGATATTTCAACTTTTCCTCAAAACATTTTTTTTGAAATATTT
Found at i:8652959 original size:46 final size:46
Alignment explanation
Indices: 8652872--8652959 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 46
8652862 CATTTTTTTG
* *
8652872 AAATATTTTCTTATTTAAAAAAATTTGATATTTCAACTTTTCTGTA
1 AAATATTTTCTTATTTAAAAAAATTTGATATTTAAAATTTTCTGTA
8652918 AAATATTTT-TTACTTTAAAAAAA-TTGATATTCTAAAATTTTC
1 AAATATTTTCTTA-TTTAAAAAAATTTGATATT-TAAAATTTTC
8652960 ATCATTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
45 11 0.29
46 27 0.71
ACGTcount: A:0.40, C:0.08, G:0.03, T:0.49
Consensus pattern (46 bp):
AAATATTTTCTTATTTAAAAAAATTTGATATTTAAAATTTTCTGTA
Found at i:8659413 original size:2 final size:2
Alignment explanation
Indices: 8659406--8659441 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8659396 AAATGGTGTA
*
8659406 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8659442 GTTGTGTGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8659928 original size:2 final size:2
Alignment explanation
Indices: 8659921--8659953 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8659911 AGTATTTAAT
8659921 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8659954 CCTCCCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8661849 original size:41 final size:42
Alignment explanation
Indices: 8661803--8661890 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
8661793 TAAAATTCTG
* * *
8661803 TCAAATAGTTATGAC-CTTTATGA-ATAATAATCTATTTATAT
1 TCAAATAGTTAAGACTATTTATCATATAATAAT-TATTTATAT
* *
8661844 TCAAATAGTTAAGACTATTTGTCATATAATAATTATTTCTAT
1 TCAAATAGTTAAGACTATTTATCATATAATAATTATTTATAT
8661886 TCAAA
1 TCAAA
8661891 AATAATTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
41 14 0.35
42 18 0.45
43 8 0.20
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (42 bp):
TCAAATAGTTAAGACTATTTATCATATAATAATTATTTATAT
Found at i:8664500 original size:43 final size:43
Alignment explanation
Indices: 8664453--8664544 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
8664443 ATGATCATTT
* *
8664453 ATATAATCATGA-CATTTATGA-ATAATAATTTATTTATATTTAA
1 ATATAAT-ATGACCATTTATCATATAATAA-TTATTTATATTCAA
*
8664496 ATAT-ATATGACCATTTATCATATAATAATTATTTTTATTCAA
1 ATATAATATGACCATTTATCATATAATAATTATTTATATTCAA
*
8664538 AAATAAT
1 ATATAAT
8664545 TATTTAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
41 4 0.10
42 25 0.60
43 13 0.31
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.46
Consensus pattern (43 bp):
ATATAATATGACCATTTATCATATAATAATTATTTATATTCAA
Found at i:8664605 original size:21 final size:20
Alignment explanation
Indices: 8664575--8664616 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
8664565 TTAATATAAA
8664575 AATTAA-TTTTATATATCAAT
1 AATTAATTTTTATAT-TCAAT
8664595 AATTAAATTTTTATATTCAAT
1 AATT-AATTTTTATATTCAAT
8664616 A
1 A
8664617 TAAGATACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 8 0.40
22 8 0.40
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
AATTAATTTTTATATTCAAT
Found at i:8666214 original size:23 final size:22
Alignment explanation
Indices: 8666186--8666249 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
8666176 AACTAAACCT
*
8666186 TTTTTTTTTTTTCATTTTTCCC
1 TTTTTTTTTTTTCCTTTTTCCC
*
8666208 TTCTTTTTTTTTCCTTTTTCCC
1 TTTTTTTTTTTTCCTTTTTCCC
*
8666230 TATTTTATTTTTTCCTTTTT
1 T-TTTTTTTTTTTCCTTTTT
8666250 TTGTTTGACT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 21 0.57
23 16 0.43
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTTTTTTTTTCCTTTTTCCC
Done.