Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 37 of 130
Found at i:9215621 original size:946 final size:946
Alignment explanation
Indices: 9213983--9216082 Score: 2491
Period size: 946 Copynumber: 2.2 Consensus size: 946
9213973 AATCAAATTA
* * *
9213983 ACTATTATGCCATCATACTATAATTACGAAAATATCTC-TTCTTTTATAATTATTTACTAAATAA
1 ACTATTATGCCATCAAACCATAATTACGAAAATA-CTCATTC-CTTATAATTATTTACTAAATAA
* **
9214047 TCCTT-TATGAAATTACCAACATATTATTTTCAATATATGATAAGAAATTGATATGTAGCCAAAT
64 T-CTTCTATGAAATTACCAAAATAACATTTTCAATATATGATAAGAAATTGATATG--G-CAAAT
* * * * * * *
9214111 TGACTATTAT-ACCGCACACCATAATTACAGAAATACCTC-TTCTCTTATAATTATTTACTAAAT
125 GGACTATTATGCCCTCATACAATAATTA-AAAAATGCC-CATTCTCTTATAATTATTTACTAAAT
* * * * *
9214174 AATTCTTTATTATATTACCAAAATACCTTGTCCATTATAGAAAGAAAATAATATTTTTGCTTTGA
188 AATCCTTTATTATATTACCAAAATACCATATACATTATAGAAAGAAAATAATATCTTTGCTTTGA
* *
9214239 TTTATGATTAAAATAATATTTTCAATAGAAAATAATTTTTTTATTTTTAAAATGATATTGAATTT
253 TTTATGAGTAAAATAATATTTTCAATACAAAATAATTTTTTTATTTTTAAAATGATATTGAATTT
9214304 TTCAAAAAAGAATTTGAATTTTTAAATTAATTTGAAATTTTAAAAAACTATTTTCTATTAAAAAC
318 TTCAAAAAAGAATTTG-----------TAA-TT---ATTTTAAAAAACTATTTTCTATTAAAAAC
9214369 AAAAAATATAACTAATAAATTATATTACAAAAAAATATAAAAATATAATTTTAAATTAATTATTT
368 AAAAAATATAACTAATAAATTATATTACAAAAAAATATAAAAATATAATTTTAAATTAATTATTT
* * * *
9214434 TATAAACATATATGAAATATATAAAATTTTAAAATAGTTTCGTCATTGGTCTATAAACTTTGAAG
433 TATAAACATATATGAAATATATAAAATGTTAAAATAGTTTCATCATTGGTCCATAAACTTTGAAA
* * *
9214499 GAATTATATTTTGGTCCCTCATCTGCCACTTAGGATGCTAGCTGATGTCATCACATGGTGCCAGT
498 GAATTACATTTTGGTCCCTCATCTACCACTTAGGATACTAGCTGATGTCATCACA--GTG-C-GT
* * *
9214564 TGGCATTTACAGTCAATTTAGATGGTTCCATAAATAAAAGAACTAAAATAAGATAACTTTAGGCA
559 CGGCATTTACAGTCAATTTAGATAGTTCCATAAACAAAAGAACTAAAATAAGATAACTTTAGGCA
* * * *
9214629 ATTAGGAATCCAATTATAACTTTTTAAAGTTTAGGCATCAAAATAGAATTTGGGACAAAATTTAA
624 ATTAGGAATCCAATTAGAACTTTTTAAAGTTTAGGCACCAAAATAGAATTTAGGACAAAATTCAA
9214694 GGATTA-TGAATGCTATTAACCCTTACAAAAATACCATTTATTTTATAATTATTTACTAAATAAT
689 GGATTAGT-AATGCTATTAACCCTTACAAAAATACCATTTATTTTATAATTATTTACTAAATAAT
* * * * * ** * **
9214758 CTCCTATGAAAACATTAAAATACCTTTTCCACCATATGATAAGAAATTGACATTTGGCTAAATGG
753 CTCCTATGAAAACACTAAAATACCATTTCCAACATATGATAAAAAATTGACATATAACCAAACAG
* * *
9214823 ATTATTATGCCCTCATATAATAATTACAAAAATACC-ACTT-TACTTGTAATTATTTACTAAATA
818 ATTATTATGCCCTCATATAATAAGTA-AAAAACACCTA-TTCT-CTTATAATTATTTACTAAATA
*
9214886 AT-CTCTTATAAAATTACTAAAATACCATTTC-ATTAAATAATAAAAAGTTAACATGTAGTCAAA
880 ATAC-CTTATAAAATTACCAAAATACCATTTCTATTAAATAATAAAAAGTTAACATGTAGTCAAA
9214949 ATG
944 ATG
** *
9214952 ACTATTATTTCATCAAACCATAACTACGAAAATACTCATTCCATTATAATTATTTACTAAATAAT
1 ACTATTATGCCATCAAACCATAATTACGAAAATACTCATTCC-TTATAATTATTTACTAAATAAT
* *
9215017 CTTCTATGAAATTACCAAAATAACCTTTTCAATATATGATAAGAAATTGACACTGGCTAAATGGA
65 CTTCTATGAAATTACCAAAATAACATTTTCAATATATGATAAGAAATTGATA-TGGC-AAATGGA
* *
9215082 CTATTATGCCCTCATACTATAATTATGAAAATGCCCATTCTCTTATAATTATTTACTAAATAATC
128 CTATTATGCCCTCATACAATAATTA-AAAAATGCCCATTCTCTTATAATTATTTACTAAATAATC
* * * *
9215147 CTTTATTATATTACCAAAATACCATATACATTATTGATAGAAAATAATATCTTTGTTTTGATTTG
192 CTTTATTATATTACCAAAATACCATATACATTATAGAAAGAAAATAATATCTTTGCTTTGATTTA
*
9215212 TGAGTAAAATAATATTTTCAATACAAAAT-A-TTTTTTGTTTTTAAAATGATATTGAATTTTTCA
257 TGAGTAAAATAATATTTTCAATACAAAATAATTTTTTTATTTTTAAAATGATATTGAATTTTTCA
* * * *
9215275 AAAAAGAATTTG-AA-T-TTTTAAAAAACTATTTTCTATTATAAGCAAAAATATTTAATTAAT-A
322 AAAAAGAATTTGTAATTATTTTAAAAAACTATTTTCTATTAAAAACAAAAA-ATATAACTAATAA
* *
9215336 ATTATATTACAACAAAAAATATAAAAATATAATTTTAATTTAATTAATTTT-TAAAATATATATG
386 ATTATATTAC-A-AAAAAATATAAAAATATAATTTTAAATTAATT-ATTTTAT-AAACATATATG
* **
9215400 AAATATGTAAAATGTTAAAATAGTTTCATTTTTGGTCCATAAACTTTGAAAGAATTACATTTTGG
447 AAATATATAAAATGTTAAAATAGTTTCATCATTGGTCCATAAACTTTGAAAGAATTACATTTTGG
* * * *
9215465 TCCTTTCATCTATCACTT-GAGATACTAGTTGATGTCATCAC-GTG-G-CGGCATTTACCGTCAA
512 TCC-CTCATCTACCACTTAG-GATACTAGCTGATGTCATCACAGTGCGTCGGCATTTACAGTCAA
* * * * * **
9215526 TTTAGATAGTTTCATAGACAAAAGGACTAAAATAGGATAACTTTGGGCAATTA-GAGATCTGATT
575 TTTAGATAGTTCCATAAACAAAAGAACTAAAATAAGATAACTTTAGGCAATTAGGA-ATCCAATT
** * *
9215590 AGAACTTTTTAAAGTTTAGAG-ACCAAAATAGAATTTAGGTTAAAATTCAGGGATTAGTAGTGCT
639 AGAACTTTTTAAAGTTTAG-GCACCAAAATAGAATTTAGGACAAAATTCAAGGATTAGTAATGCT
* ** * *
9215654 ATTAACCTTTATGAAAATACCATTTGTTTTATAATTATTTACTAAATAATCTCCTATGAAATCAC
703 ATTAACCCTTACAAAAATACCATTTATTTTATAATTATTTACTAAATAATCTCCTATGAAAACAC
* * * ** *
9215719 TAAAATACCATTTCTAATATATGATAAAAAATTGACATATAACCAAGCAGATTATTATGTTCTTA
768 TAAAATACCATTTCCAACATATGATAAAAAATTGACATATAACCAAACAGATTATTATGCCCTCA
* * *
9215784 TCTCATAAGTATAAAACACCTATTCTCTTATAATTATTTACTAAATAATACCTTATAAAATTACC
833 TATAATAAGTAAAAAACACCTATTCTCTTATAATTATTTACTAAATAATACCTTATAAAATTACC
* * * * * *
9215849 AACATACCATTTCTATTATATGATAAGAAGTTAACATGTTGTCAAATTG
898 AAAATACCATTTCTATTAAATAATAAAAAGTTAACATGTAGTCAAAATG
* * * *
9215898 ACTATTAAGCCATCAAATCATAATTACG-AAA-A-T-A-TCC-T-T-GTCATTTACTAAATAATC
1 ACTATTATGCCATCAAACCATAATTACGAAAATACTCATTCCTTATAATTATTTACTAAATAATC
* * * *
9215955 -CCATATAAAATTACTAAAAT-ACTATTTTCAATATATGATAAGAAATTGATATGTGGCCAATGG
66 TTC-TATGAAATTACCAAAATAAC-ATTTTCAATATATGATAAGAAATTGATA--TGGCAAATGG
* * *
9216018 ACTATTATGCCATCATACAATAATTACAAAAATGCCCATACTTTTATAATTATTTACTAAATAAT
127 ACTATTATGCCCTCATACAATAATTA-AAAAATGCCCATTCTCTTATAATTATTTACTAAATAAT
9216083 TTCTTATGAA
Statistics
Matches: 983, Mismatches: 124, Indels: 80
0.83 0.10 0.07
Matches are distributed among these distances:
936 3 0.00
937 121 0.12
938 5 0.01
939 1 0.00
941 3 0.00
942 1 0.00
943 1 0.00
944 1 0.00
945 61 0.06
946 291 0.30
947 3 0.00
949 42 0.04
950 13 0.01
951 32 0.03
952 76 0.08
953 31 0.03
955 2 0.00
967 45 0.05
968 22 0.02
969 227 0.23
970 2 0.00
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.38
Consensus pattern (946 bp):
ACTATTATGCCATCAAACCATAATTACGAAAATACTCATTCCTTATAATTATTTACTAAATAATC
TTCTATGAAATTACCAAAATAACATTTTCAATATATGATAAGAAATTGATATGGCAAATGGACTA
TTATGCCCTCATACAATAATTAAAAAATGCCCATTCTCTTATAATTATTTACTAAATAATCCTTT
ATTATATTACCAAAATACCATATACATTATAGAAAGAAAATAATATCTTTGCTTTGATTTATGAG
TAAAATAATATTTTCAATACAAAATAATTTTTTTATTTTTAAAATGATATTGAATTTTTCAAAAA
AGAATTTGTAATTATTTTAAAAAACTATTTTCTATTAAAAACAAAAAATATAACTAATAAATTAT
ATTACAAAAAAATATAAAAATATAATTTTAAATTAATTATTTTATAAACATATATGAAATATATA
AAATGTTAAAATAGTTTCATCATTGGTCCATAAACTTTGAAAGAATTACATTTTGGTCCCTCATC
TACCACTTAGGATACTAGCTGATGTCATCACAGTGCGTCGGCATTTACAGTCAATTTAGATAGTT
CCATAAACAAAAGAACTAAAATAAGATAACTTTAGGCAATTAGGAATCCAATTAGAACTTTTTAA
AGTTTAGGCACCAAAATAGAATTTAGGACAAAATTCAAGGATTAGTAATGCTATTAACCCTTACA
AAAATACCATTTATTTTATAATTATTTACTAAATAATCTCCTATGAAAACACTAAAATACCATTT
CCAACATATGATAAAAAATTGACATATAACCAAACAGATTATTATGCCCTCATATAATAAGTAAA
AAACACCTATTCTCTTATAATTATTTACTAAATAATACCTTATAAAATTACCAAAATACCATTTC
TATTAAATAATAAAAAGTTAACATGTAGTCAAAATG
Found at i:9215992 original size:121 final size:120
Alignment explanation
Indices: 9215819--9216050 Score: 288
Period size: 121 Copynumber: 1.9 Consensus size: 120
9215809 TCTTATAATT
* * * *
9215819 ATTTACTAAATAATACCTTATAAAATTACCAACATACCATTTCTATTATATGATAAGAAGTTAAC
1 ATTTACTAAATAATACCATATAAAATTACCAAAATACCATTTCTAATATATGATAAGAAATTAAC
* * *
9215884 ATGTTGTCAAATTGACTATTAAGCCATCAAATC-ATAATTACGAAAATATCCTTGTC
66 ATG-TGGCAAATGGACTATTAAGCCATCAAA-CAATAATTACAAAAATATCCTTGTC
* * * *
9215940 ATTTACTAAATAATCCCATATAAAATTACTAAAATACTATTT-TCAATATATGATAAGAAATTGA
1 ATTTACTAAATAATACCATATAAAATTACCAAAATACCATTTCT-AATATATGATAAGAAATTAA
* * * *
9216004 TATGTGGCCAATGGACTATTATGCCATCATACAATAATTACAAAAAT
65 CATGTGGCAAATGGACTATTAAGCCATCAAACAATAATTACAAAAAT
9216051 GCCCATACTT
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
119 1 0.01
120 36 0.38
121 57 0.61
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (120 bp):
ATTTACTAAATAATACCATATAAAATTACCAAAATACCATTTCTAATATATGATAAGAAATTAAC
ATGTGGCAAATGGACTATTAAGCCATCAAACAATAATTACAAAAATATCCTTGTC
Found at i:9216213 original size:118 final size:118
Alignment explanation
Indices: 9216061--9216276 Score: 306
Period size: 118 Copynumber: 1.8 Consensus size: 118
9216051 GCCCATACTT
** * * * *
9216061 TTATAATTATTTACTAAATAATTTCTTATGAAATTATTAAAATACCATTTCCATTATATGATATG
1 TTATAATTATTTACTAAATAATCCCTTATAAAATTATAAAAATACCATTTCCAATATATGATAAG
*
9216126 AAATTAACATGTAGCCAAATTGACTATCATGCCATCGAATCATACCCCTATCA
66 AAATCAACATGTAGCCAAATTGACTATCATGCCATCGAATCATACCCCTATCA
* *
9216179 TTATAATTATTTACTTAATAATCCCTTATAAAATTATAAAAATATCATTTCCAATATATGATAAG
1 TTATAATTATTTACTAAATAATCCCTTATAAAATTATAAAAATACCATTTCCAATATATGATAAG
* * * * *
9216244 AAATCAATATGTAGTCATATTTACTATTATGCC
66 AAATCAACATGTAGCCAAATTGACTATCATGCC
9216277 CTCATACCAT
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
118 84 1.00
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.39
Consensus pattern (118 bp):
TTATAATTATTTACTAAATAATCCCTTATAAAATTATAAAAATACCATTTCCAATATATGATAAG
AAATCAACATGTAGCCAAATTGACTATCATGCCATCGAATCATACCCCTATCA
Found at i:9216353 original size:248 final size:250
Alignment explanation
Indices: 9215811--9216400 Score: 674
Period size: 248 Copynumber: 2.4 Consensus size: 250
9215801 ACCTATTCTC
* *
9215811 TTATAATTATTTACTAAATAATAC-CTTATAAAATTACCAACATACCATTTCTATTATATGATAA
1 TTATAATTATTTACTAAATAAT-CTCTTATAAAATTACCAAAATACCATTTCCATTATATGATAA
* * * * ** **
9215875 GAAGTTAACATGTTGTCAAATTGACTATTAAGCCATCAAATCATAATTACGAAAATATCCTTGTC
65 GAAATTAACATGTAGCCAAATTGACTATCAAGCCATCAAATCATAACCACGAAAATATCAATGTC
* **
9215940 ATTTACTAAATAATCCCATATAAAATTACTAAAATACTATTTTCAATATATGATAAGAAATTGAT
130 ATTTACTAAATAATCCCATATAAAATTACTAAAATACTATTTCCAATATATGATAAGAAATCAAT
* *
9216005 ATGTGGCCAATGGACTATTATGCCATCATACAATAATTACAAAAATGCCCATACTT
195 ATGTAGCCAATGGACTATTATGCCATCATACAATAATTACAAAAATGACCATACTT
* * ** *
9216061 TTATAATTATTTACTAAATAATTTCTTATGAAATTATTAAAATACCATTTCCATTATATGATATG
1 TTATAATTATTTACTAAATAATCTCTTATAAAATTACCAAAATACCATTTCCATTATATGATAAG
* * * * * *
9216126 AAATTAACATGTAGCCAAATTGACTATCATGCCATCGAATCAT-ACCCCTATCATTAT-AAT-T-
66 AAATTAACATGTAGCCAAATTGACTATCAAGCCATCAAATCATAACCACGA-AAATATCAATGTC
* *
9216187 ATTTACTTAATAATCCCTTATAAAATTA-TAAAAATA-TCATTTCCAATATATGATAAGAAATCA
130 ATTTACTAAATAATCCCATATAAAATTACT-AAAATACT-ATTTCCAATATATGATAAGAAATCA
* ** * * ***
9216250 ATATGTAGTCATATTTACTATTATGCCCTCATACCATAATTATGGAAAT-ACCATTACTT
193 ATATGTAGCCA-ATGGACTATTATGCCATCATACAATAATTACAAAAATGACCA-TACTT
* * * **
9216309 TTATAACTATTTACTAAATAATCTCTTATTATATTACCAAAATACTTTTTCCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCTCTTATAAAATTACCAAAATACCATTTCCATTATATGATAAG
* * *
9216374 AAATCAATATGTGGCCAAATTGACTAT
66 AAATTAACATGTAGCCAAATTGACTAT
9216401 TATGTTCTTA
Statistics
Matches: 286, Mismatches: 48, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
246 2 0.01
247 66 0.23
248 116 0.41
249 4 0.01
250 98 0.34
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (250 bp):
TTATAATTATTTACTAAATAATCTCTTATAAAATTACCAAAATACCATTTCCATTATATGATAAG
AAATTAACATGTAGCCAAATTGACTATCAAGCCATCAAATCATAACCACGAAAATATCAATGTCA
TTTACTAAATAATCCCATATAAAATTACTAAAATACTATTTCCAATATATGATAAGAAATCAATA
TGTAGCCAATGGACTATTATGCCATCATACAATAATTACAAAAATGACCATACTT
Found at i:9216400 original size:130 final size:129
Alignment explanation
Indices: 9216179--9217234 Score: 845
Period size: 130 Copynumber: 8.2 Consensus size: 129
9216169 ACCCCTATCA
* * * * *
9216179 TTATAATTATTTACTTAATAATCCCTTATAAAATTATAAAAATA-TCATTTCCAATATATGATAA
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACT-TTTTCCATTATATGATAA
** * * * * * *
9216243 GAAATCAATATGTAGTCATATTTACTATTATGCCCTCATACCATAATTATGGAAATACCATTACT
65 GAAATTGATATGTGGCCAAATTGACTATTATGCTCTCATACCATAATTATGAAAATACCATT-CT
9216308 T
129 T
* * * * *
9216309 TTATAACTATTTACTAAATAATCTCTTATTATATTACCAAAATACTTTTTCCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACTTTTTCCATTATATGATAAG
** * * * **
9216374 AAATCAATATGTGGCCAAATTGACTATTATGTTCTTATATCATAATTACAAAAATACTCATT-TT
66 AAATTGATATGTGGCCAAATTGACTATTATGCTCTCATACCATAATTATGAAAATAC-CATTCTT
* * ** * *
9216438 CTTATAACTATTTACTAAATAATCCCCTATGAAATTATCAAAATACGCTTTCTATTATTTGATAA
1 -TTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACTTTTTCCATTATATGATAA
* * * * * * * *
9216503 GAAATTGATATGAGGCCAAATGGACTGTTATTCCCTCATTCTATAATTATGAAACTACTCATTCT
65 GAAATTGATATGTGGCCAAATTGACTATTATGCTCTCATACCATAATTATGAAAATAC-CATTCT
*
9216568 C
129 T
* * *
9216569 TTATAATAATTTAATAAATAATCTCC-TATGAAATTAGT-AAAATA-TTATTTCCATTATGTGAT
1 TTATAATTATTTACTAAATAATC-CCTTATGAAATTA-TCAAAATACTT-TTTCCATTATATGAT
* * * * * ** * * *
9216631 AAGAAATTTATATGAGGTCAAATGGACTATCATTTTCTCATACTATAA-TATGAAAATACCCCTA
63 AAGAAATTGATATGTGGCCAAATTGACTATTATGCTCTCATACCATAATTATGAAAATA-CCATT
*
9216695 CTC
127 CTT
* * *
9216698 TTATAGTTA-TTA-TAAATAATCCCTAATTAAATTATCAAAATACTCTTTT-CATTATATGATAA
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACT-TTTTCCATTATATGATAA
* ** * *
9216760 G--ATT-ACATGTGATCAAA-TGAACTATTATGCTCTCATA-CATAATTATGAAAATGCCATTAT
65 GAAATTGATATGTGGCCAAATTG-ACTATTATGCTCTCATACCATAATTATGAAAATACCATTCT
*
9216820 C
129 T
* ** * ** *
9216821 TTATAATTATTTACTCAATAATCTATCATGAAATTAAAAAAATACCTTTTCCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACTTTTTCCATTATATGATAAG
* * * ** * * *
9216886 AAATTGACATTTGGTCAAATCAATTATTATTCTCTCATACCATAATTATGAAAATACCTTTCTT
66 AAATTGATATGTGGCCAAATTGACTATTATGCTCTCATACCATAATTATGAAAATACCATTCTT
* * ** *
9216950 TTAAAATTATTTATTAAATAATCCCTTAAAAAATTATCAAAATGAC-CTTTCCATTATATGATAA
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAAT-ACTTTTTCCATTATATGATAA
** * * * * * * * * *
9217014 GAAATTGACGTATAGCCAAATTGACCATTAAGCTATCATATCATAATTACGAAAATATCACT-TT
65 GAAATTGATATGTGGCCAAATTGACTATTATGCTCTCATACCATAATTATGAAAATACCATTCTT
* * * * * * **
9217078 TTAAAATTTTTTACTAAATAATCTCC-TATGAAATTAGCAATATTCTCTTTCCAACATATGATAA
1 TTATAATTATTTACTAAATAATC-CCTTATGAAATTATCAAAATACTTTTTCCATTATATGATAA
* * * * * * **
9217142 GAAATTGATATGTTGCTAAATGGACTACTATGC-CACACACCATAATTACAAAAATACCCATTC-
65 GAAATTGATATGTGGCCAAATTGACTATTATGCTCTCATACCATAATTATGAAAATA-CCATTCT
9217205 T
129 T
* *
9217206 ATATAATTATTTACTAAATAATCCTTTAT
1 TTATAATTATTTACTAAATAATCCCTTAT
9217235 TATATAACCA
Statistics
Matches: 744, Mismatches: 154, Indels: 58
0.78 0.16 0.06
Matches are distributed among these distances:
123 18 0.02
124 40 0.05
125 41 0.06
126 3 0.00
127 59 0.08
128 136 0.18
129 142 0.19
130 296 0.40
131 9 0.01
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (129 bp):
TTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATACTTTTTCCATTATATGATAAG
AAATTGATATGTGGCCAAATTGACTATTATGCTCTCATACCATAATTATGAAAATACCATTCTT
Found at i:9218519 original size:387 final size:387
Alignment explanation
Indices: 9217795--9218529 Score: 826
Period size: 387 Copynumber: 1.9 Consensus size: 387
9217785 TTGTCATATA
* * * *
9217795 ATTTACTAAATAATCTCTTATAAAATTACTAAAATATTCTTTCCAATATATGATAAGAGTTTGAC
1 ATTTACAAAATAATCTCTTATAAAATTACCAAAATATTCTTTCCAATATATGATAAAAGTTTAAC
* * * *
9217860 ATCTAGCCAAACTAATTATTATGCCCTCATATCATAATTATGAAAATACTCCTTTTTTTCATAAT
66 ATCTAGCCAAACTAACTATTATGCCATCATATCACAATTATGAAAATACTCCTTCTTTTCATAAT
* * * * * * *
9217925 TATTTATTAAACAATCTCTTATAAAATTATTAAAATACCTTTTCTATTATATGATAAGAAGTTAA
131 TATTTACTAAACAATCCCTTATAAAATTATAAAAATACCTTTTCAAATATACGATAAGAAATTAA
* * * *** *
9217990 CGTGCAGCCAAATTGACTATTATGCCATCAAATCATAATTTTGAAAATACCCCTTACATTATAAT
196 CGTG-AGCCAAATTAACTATTATACCATCAAACCATAATTACAAAAATACCACTTACATTATAAT
* *
9218055 TGTTTCTTAAATAATTCCCTTTGAAATTACCAAAATACCCTTCCCAATATATGATAAAAAATTGA
260 TATTTCTTAAATAATTCCCTTTGAAATTACCAAAATACCATTCCCAATATATGATAAAAAATTGA
*
9218120 CATGTAGCCAAATGGACTATTATATCCTTATACATAATTATGAAAATGCTTATTCTCATAATT
325 CATGTAGCCAAATGCACTATTATATCCTTATACATAATTATGAAAATGCTTATTCTCATAATT
* *
9218183 ATTTACAAAATAAT-TCCTTATGAAATTACCAAAATACCTT-TTTCCATTATATGATAAAAAG-T
1 ATTTACAAAATAATCT-CTTATAAAATTACCAAAATA--TTCTTTCCAATATATGAT-AAAAGTT
* * * *
9218245 TAACATGTAGCCAAATTGACTATTATGCTATCGA-ATCACAATTATGAAAATA-TCCCTTCTTTT
62 TAACATCTAGCCAAACTAACTATTATGCCATC-ATATCACAATTATGAAAATACT-CCTTCTTTT
*
9218308 -ATAATTATTTACTAAATAATCCCTTATAAAATTA-AAAAATACCTTTTCAAATATACGATAAGA
125 CATAATTATTTACTAAACAATCCCTTATAAAATTATAAAAATACCTTTTCAAATATACGATAAGA
* * * * ** * * * **
9218371 AATCTACATGTG-GTCAAATTAATTATTCTACTGTCATACCATAATTACAAAAATATCATTTATT
190 AAT-TA-ACGTGAGCCAAATTAACTATTATACCATCAAACCATAATTACAAAAATACCACTTACA
** * * *
9218435 TTATAATTATTTAC-TAAATAA-TCTTTTATGAAATTATCAAAATACCATTTCCATTATATGATA
253 TTATAATTATTT-CTTAAATAATTCCCTT-TGAAATTACCAAAATACCATTCCCAATATATGATA
* * *
9218498 AGAAATCT-ACATGTGGCCAAATTCACTATTAT
316 AAAAAT-TGACATGTAGCCAAATGCACTATTAT
9218530 GGCCTCAAAT
Statistics
Matches: 285, Mismatches: 51, Indels: 23
0.79 0.14 0.06
Matches are distributed among these distances:
386 4 0.01
387 138 0.48
388 67 0.24
389 69 0.24
390 7 0.02
ACGTcount: A:0.40, C:0.16, G:0.06, T:0.38
Consensus pattern (387 bp):
ATTTACAAAATAATCTCTTATAAAATTACCAAAATATTCTTTCCAATATATGATAAAAGTTTAAC
ATCTAGCCAAACTAACTATTATGCCATCATATCACAATTATGAAAATACTCCTTCTTTTCATAAT
TATTTACTAAACAATCCCTTATAAAATTATAAAAATACCTTTTCAAATATACGATAAGAAATTAA
CGTGAGCCAAATTAACTATTATACCATCAAACCATAATTACAAAAATACCACTTACATTATAATT
ATTTCTTAAATAATTCCCTTTGAAATTACCAAAATACCATTCCCAATATATGATAAAAAATTGAC
ATGTAGCCAAATGCACTATTATATCCTTATACATAATTATGAAAATGCTTATTCTCATAATT
Found at i:9218551 original size:130 final size:128
Alignment explanation
Indices: 9217795--9218547 Score: 630
Period size: 130 Copynumber: 5.8 Consensus size: 128
9217785 TTGTCATATA
* **
9217795 ATTTACTAAATAATCTCTTATAAAATTACTAAAATA-TTCTTTCCAATATATGATAAGAGTTTGA
1 ATTTACTAAATAATCTCTTATAAAATTAC-AAAATACCT-TTTCCAATATATGATAAGAAATTGA
* * * * * *
9217859 CATCTAGCCAAACTAATTATTATGCCCTCATATCATAATTATGAAAATA-CTCCTTTTTTTCATA
64 CATGTAGCCAAATTGACTATTATG-CCTCAAATCATAATTATGAAAATATC-CCTTATTTT-ATA
9217923 ATT
126 ATT
* * * * * * *
9217926 ATTTATTAAACAATCTCTTATAAAATTATTAAAATACCTTTTCTATTATATGATAAGAAGTTAAC
1 ATTTACTAAATAATCTCTTATAAAATTA-CAAAATACCTTTTCCAATATATGATAAGAAATTGAC
* * * * **
9217991 GTGCAGCCAAATTGACTATTATGCCATCAAATCATAATTTTGAAAATACCCCTTACATTATAATT
65 ATGTAGCCAAATTGACTATTATGCC-TCAAATCATAATTATGAAAATATCCCTTATTTTATAATT
* * * * * *
9218056 GTTT-CTTAAATAATTCCCTT-TGAAATTACCAAAATACCCTTCCCAATATATGATAAAAAATTG
1 ATTTAC-TAAATAA-TCTCTTATAAAATTA-CAAAATACCTTTTCCAATATATGATAAGAAATTG
* * * * * *
9218119 ACATGTAGCCAAATGGACTATTATATCCTTATA-CATAATTATG-AAA-AT-GCTTATTCTCATA
63 ACATGTAGCCAAATTGACTATTAT-GCCTCAAATCATAATTATGAAAATATCCCTTATT-TTATA
9218180 ATT
126 ATT
* * *
9218183 ATTTACAAAATAAT-TCCTTATGAAATTACCAAAATACCTTTTTCCATTATATGATAA-AAAGTT
1 ATTTACTAAATAATCT-CTTATAAAATTA-CAAAATACC-TTTTCCAATATATGATAAGAAA-TT
* * * * *
9218246 AACATGTAGCCAAATTGACTATTATGCTATCGAATCACAATTATGAAAATATCCCTTCTTTTATA
62 GACATGTAGCCAAATTGACTATTATGC-CTCAAATCATAATTATGAAAATATCCCTTATTTTATA
9218311 ATT
126 ATT
* * * *
9218314 ATTTACTAAATAATCCCTTATAAAATTAAAAAATACCTTTTCAAATATACGATAAGAAATCT-AC
1 ATTTACTAAATAATCTCTTATAAAATTACAAAATACCTTTTCCAATATATGATAAGAAAT-TGAC
* * * * * * * * * ** **
9218378 ATGTGGTCAAATTAATTATTCTACTGTCATACCATAATTACAAAAATATCATTTATTTTATAATT
65 ATGTAGCCAAATTGACTATTATGC-CTCAAATCATAATTATGAAAATATCCCTTATTTTATAATT
* * * *
9218443 ATTTACTAAATAATCTTTTATGAAATTATCAAAATACCATTTCCATTATATGATAAGAAATCT-A
1 ATTTACTAAATAATCTCTTATAAAATTA-CAAAATACCTTTTCCAATATATGATAAGAAAT-TGA
* * *
9218507 CATGTGGCCAAATTCACTATTATGGCCTCAAATTATAATTA
64 CATGTAGCCAAATTGACTATTAT-GCCTCAAATCATAATTA
9218548 CAAATGTTGG
Statistics
Matches: 496, Mismatches: 103, Indels: 47
0.77 0.16 0.07
Matches are distributed among these distances:
126 8 0.02
127 39 0.08
128 46 0.09
129 110 0.22
130 149 0.30
131 137 0.28
132 7 0.01
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.38
Consensus pattern (128 bp):
ATTTACTAAATAATCTCTTATAAAATTACAAAATACCTTTTCCAATATATGATAAGAAATTGACA
TGTAGCCAAATTGACTATTATGCCTCAAATCATAATTATGAAAATATCCCTTATTTTATAATT
Found at i:9226723 original size:130 final size:124
Alignment explanation
Indices: 9226066--9227486 Score: 746
Period size: 129 Copynumber: 11.2 Consensus size: 124
9226056 ACCCCTTCCA
* * * * * *
9226066 TTATAATTATTTACTAAATAATCCCTATGAAATTATCAAAATACCTTTTCAAATATATGATATGA
1 TTATAATTATTTACTAAATAATCTCTA-AAAATTACCAAAATA-CTTTT-TATTATATGATAAGA
* * * * *
9226131 AATTGACATGTGATCAAATGGACTGTTATGCCTTCATACCATAATTACAAAAATACCCCTTATT-
63 AATTGATATGTGCT-AAATGGACTATTATGCCTTCATACCATAATTACGAAAATA-CTCTT-TTC
* * ** * * **
9226195 TTATAATAATTTATTAAATTTTC-CTATGAAATTTA-CAATATACCCTTTCCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCTCTA--AAAATTACCAAAATA--CTTTTTATTATATGATAAG
* * * * * *
9226258 AAATTTATATCAG-GCTAAATGGACTATTATTCCCTCATACAATAATTACGAAACTACCCTTTTT
62 AAATTGATAT--GTGCTAAATGGACTATTATGCCTTCATACCATAATTACGAAAATACTC-TTTT
*
9226322 T
124 C
* * * **
9226323 TTATATTTA-TTA-TAACTAAGC-CTAATTTAAATTACC--AA-A--TTCCATTATATGAT-AG-
1 TTATAATTATTTACTAAATAATCTCTAA---AAATTACCAAAATACTTTTTATTATATGATAAGA
* * ** * * * * *
9226378 GATT-ACATGTGGCTAAATCAATTATTATACCCTCATACCATAGTTACGAAGATACTCATTCTT-
63 AATTGATATGT-GCTAAATGGACTATTATGCCTTCATACCATAATTACGAAAATACTC-TT-TTC
* * * * *
9226441 TTATAATTATTTACTAAATAAACCCTTAAAAATTTACAAAAATGCCTTTTTCATTATATGATAAA
1 TTATAATTATTTACTAAATAATCTC-TAAAAA-TTACCAAAAT-ACTTTTT-ATTATATGATAAG
** * * * * * * *
9226506 AAATTGGCATGTGGTCAAGTAGAGTATTATTCCCTT-ATACCATTAATTACGAAAATAACCCATC
62 AAATTGATATGTGCT-AAATGGACTATTA-TGCCTTCATACCA-TAATTACGAAAAT-ACTC-TT
9226570 TT-
122 TTC
* * *
9226572 TTATAATTATTTACCAAATAATCCTCTAAGAAATTGCCAAAATGACTTTTCTATTACATGATAAG
1 TTATAATTATTTACTAAATAAT-CTCTAA-AAATTACCAAAAT-ACTTTT-TATTATATGATAAG
* * * * *
9226637 AAATTGACATGTGCCTAAATTGACTGTTACGCCTTCATACCATAATTACGAAAATACACTTTGTC
62 AAATTGATATGTG-CTAAATGGACTATTATGCCTTCATACCATAATTACGAAAATACTCTTT-TC
* *
9226702 TTATAATTATTTACTAAATAATTTTCTATAAAATTACCAAAATACCTTTTTTATTATATGATAAA
1 TTATAATTATTTACTAAATAA-TCTCTA-AAAATTACCAAAATA-C-TTTTTATTATATGATAAG
* * * *
9226767 AAATTGATATGTGGCCAAATGGACTATTATGCCTT-ATACTATTATTATGAAAATACTCTTTTTC
62 AAATTGATATGT-GCTAAATGGACTATTATGCCTTCATACCATAATTACGAAAATACTC-TTTTC
* * *
9226831 TTATAATTATTTACT--A-AA----T---AA-TACCAAAATACGTTTTCCATTGTATGATAAAAA
1 TTATAATTATTTACTAAATAATCTCTAAAAATTACCAAAATAC-TTTT-TATTATATGAT-AAGA
* * * * * * *
9226885 AATTAACATGAGGCTAAATGGACTATTACGCCATCATACTATAGTTACGAAAATACTCATTTTC
63 AATTGATATG-TGCTAAATGGACTATTATGCCTTCATACCATAATTACGAAAATACTC-TTTTC
* * ** * * *
9226949 TTATAATTATCTACTAAAT-ATTTCTTAAAAATTATAAAAATGCCCTTTCTATTGTATGATAAGA
1 TTATAATTATTTACTAAATAATCTC-TAAAAATTACCAAAAT--ACTTTTTATTATATGATAAGA
* ** * * * *
9227013 AATTGATATGTGGTCAAATGGGGTATTATTCCTTTC-TACCATAATTACAAAAATATTCCATCTT
63 AATTGATATGTGCT-AAATGGACTATTATGCC-TTCATACCATAATTACGAAAATACT-C-TTTT
9227077 -
124 C
* *
9227077 TTATAATTATTTATTAAATAATCTCATAAGAAATTACCAAAATATCCCTTTTATTATATGATAAG
1 TTATAATTATTTACTAAATAATCTC-TAA-AAATTACCAAAATA--CTTTTTATTATATGATAAG
* * * * * * * * *
9227142 AAATTGATATCTAACCAAAAGGACTATCATTCTCTT-ATACCGTAGTTACGAAAATA-TGCTTCT
62 AAATTGATATGT-GCTAAATGGACTATTATGC-CTTCATACCATAATTACGAAAATACT-CTTTT
9227205 C
124 C
* * * * *
9227206 TTGTAATTATTTACTAAAAAATCACCTATGAAATTACCAAAATGCCTTTTTCATTATATGATAA-
1 TTATAATTATTTACTAAATAATC-TCTA-AAAATTACCAAAAT-ACTTTTT-ATTATATGATAAG
* * * ** * *
9227270 AATATTGATATGTAGCTACATAGACTATTATACCTTTTTACCAT-ATTATGAAAATATTCCTTTT
62 AA-ATTGATATGT-GCTAAATGGACTATTATGCCTTCATACCATAATTACGAAAATACT-CTTTT
9227334 C
124 C
9227335 TTATAATTATTTGA-TAAATAATCTCATAAGAAATTACCAAAATA-TCTTTTATTATATATGATA
1 TTATAATTATTT-ACTAAATAATCTC-TAA-AAATTACCAAAATACT-TTTTA-T-TATATGATA
* * * * * * * * *
9227398 AGAAATTGATATATGACCAAAT-GATTTACTATGCCCTT-ATACTATAATAACGGAAATACCCAT
60 AGAAATTGATATGTG-CTAAATGGA-CTATTATG-CCTTCATACCATAATTACGAAAATACTCTT
*
9227461 CTC
122 TTC
*
9227464 TTATAATTATTTAATAAATAATC
1 TTATAATTATTTACTAAATAATC
9227487 CCTTATTAAA
Statistics
Matches: 1006, Mismatches: 193, Indels: 186
0.73 0.14 0.13
Matches are distributed among these distances:
115 5 0.00
116 20 0.02
117 33 0.03
118 89 0.09
119 11 0.01
120 15 0.01
121 16 0.02
122 5 0.00
124 1 0.00
125 2 0.00
126 13 0.01
127 28 0.03
128 167 0.17
129 282 0.28
130 206 0.20
131 101 0.10
132 12 0.01
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (124 bp):
TTATAATTATTTACTAAATAATCTCTAAAAATTACCAAAATACTTTTTATTATATGATAAGAAAT
TGATATGTGCTAAATGGACTATTATGCCTTCATACCATAATTACGAAAATACTCTTTTC
Found at i:9226948 original size:118 final size:116
Alignment explanation
Indices: 9226719--9226968 Score: 317
Period size: 118 Copynumber: 2.2 Consensus size: 116
9226709 TATTTACTAA
* * ** * * *
9226719 ATAATTTTCTA-TAAA-ATTACCAAAATACCTTTTTTATTATATGATAAAAAATTGATATGTGGC
1 ATAATTATCTACTAAATAATACCAAAATACCTTTTCCATTATATGATAAAAAATTAACATGAGGC
* * * *
9226782 CAAATGGACTATTATGCCTTATACTATTATTATGAAAATACTCTTTTTCTT
66 CAAATGGACTATTACGCCTCATACTATTATTACGAAAATACTCATTTTCTT
* * *
9226833 ATAATTATTTACTAAATAATACCAAAATACGTTTTCCATTGTATGATAAAAAAATTAACATGAGG
1 ATAATTATCTACTAAATAATACCAAAATACCTTTTCCATTATATGAT-AAAAAATTAACATGAGG
*
9226898 CTAAATGGACTATTACGCCATCATACTA-TAGTTACGAAAATACTCATTTTCTT
65 CCAAATGGACTATTACGCC-TCATACTATTA-TTACGAAAATACTCATTTTCTT
9226951 ATAATTATCTACTAAATA
1 ATAATTATCTACTAAATA
9226969 TTTCTTAAAA
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
114 9 0.08
115 4 0.03
116 25 0.22
117 33 0.29
118 44 0.38
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.39
Consensus pattern (116 bp):
ATAATTATCTACTAAATAATACCAAAATACCTTTTCCATTATATGATAAAAAATTAACATGAGGC
CAAATGGACTATTACGCCTCATACTATTATTACGAAAATACTCATTTTCTT
Found at i:9227573 original size:53 final size:53
Alignment explanation
Indices: 9227464--9227574 Score: 161
Period size: 53 Copynumber: 2.1 Consensus size: 53
9227454 TACCCATCTC
* * * *
9227464 TTATAATTATTTAATAAATAATCCCTTATTAAATTACAAAATGCCCTTTTCCA
1 TTATAATTACTTAATAAATAATCCCTTATAAAATTACAAAATGCCCATTTCAA
*
9227517 TTATAATTACTTACTAAATAATCCCTTATAAAATTACCAAAATG-CCATTTCAA
1 TTATAATTACTTAATAAATAATCCCTTATAAAATTA-CAAAATGCCCATTTCAA
9227570 TTATA
1 TTATA
9227575 TGATAAAAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
53 45 0.87
54 7 0.13
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.40
Consensus pattern (53 bp):
TTATAATTACTTAATAAATAATCCCTTATAAAATTACAAAATGCCCATTTCAA
Found at i:9227819 original size:130 final size:129
Alignment explanation
Indices: 9227517--9228767 Score: 710
Period size: 130 Copynumber: 9.6 Consensus size: 129
9227507 CCCTTTTCCA
* * *
9227517 TTATAATTACTTACTAAATAATCCCTTATA-AAATTACCAAAATGCCATTTCAATTATATGATAA
1 TTATAATTATTTACTAAATAATCCC--ATAGAAATTACCAAAATGCCCTTTCCATTATATGATAA
* ** ** * * * ** * *
9227581 -AAAGTTGATATGTAACTGAATGAACTATTATGCCCTTATA-CTATAATTATGAAAATATTCTTT
64 GAAA-TTGACATGTGGCCAAATGGACTATTATGTCCTTATATC-ATAATTACGAAAATACCCCTC
*
9227644 CTA
127 CTT
* * * * ** *
9227647 CTAT-ATTGTTTCCTAAATAATCCTTCA-AGAAAAATATTAAAATGCCCTTCCCATTATATGATA
1 TTATAATTATTTACTAAATAATCC--CATAG-AAATTACCAAAATGCCCTTTCCATTATATGATA
* * * *
9227710 A-AAAGTTGACAGGTGGCCAAATGGACTATTATGTCATTATATCATAATTACAAAAATACCTCTC
63 AGAAA-TTGACATGTGGCCAAATGGACTATTATGTCCTTATATCATAATTACGAAAATACCCCTC
9227774 CTT
127 CTT
* * * * * *
9227777 TTATAATAACTTACAAAATAATCCCATATGAATTTACCAAAATGGCCTTTCCATTAAATGATAAG
1 TTATAATTATTTACTAAATAATCCCATA-GAAATTACCAAAATGCCCTTTCCATTATATGATAAG
* * * * * *
9227842 AAATTGATATGTGACCAAATTGACTATTATATCCTCATATCATAATTACGAAAATACCCCTTCTC
65 AAATTGACATGTGGCCAAATGGACTATTATGTCCTTATATCATAATTACGAAAATACCCCTCCT-
9227907 T
129 T
* * *
9227908 TT-TAATTATTTACTAAATAATCTCTCATA-AAATTACTAAAATGCCATTTTCC-TTATTTGATA
1 TTATAATTATTTACTAAATAATC-C-CATAGAAATTACCAAAATGCC-CTTTCCATTATATGATA
** ** * * * * * * * *
9227970 AGAAATTGACACATGTTCAAATGGATTATTATGCCCTAATAAT-ATAATTATGAAAATTCTCTTT
63 AGAAATTGACATGTGGCCAAATGGACTATTATGTCCTTAT-ATCATAATTACGAAAATACCCCTC
***
9228034 GGC
127 CTT
** * * * * * *
9228037 TTATAATTATTTACTAAATAATCCTTTATGAAATTACCTAAATACCATTACGAGTATATGATAAG
1 TTATAATTATTTACTAAATAATCCCATA-GAAATTACCAAAATGCCCTTTCCATTATATGATAAG
* * *
9228102 GAATTGACCTATGGCCAAATGGACTATTATG-CTCTTATATCATAATTACGAAAATACCCCAT-C
65 AAATTGACATGTGGCCAAATGGACTATTATGTC-CTTATATCATAATTACGAAAATACCCC-TCC
*
9228165 TC
128 TT
* * *
9228167 TTATAATCATTTACTAAATAATCCC-TCA-AAATTTACTAAAATGCCCTTTCCATTATATAATAA
1 TTATAATTATTTACTAAATAATCCCAT-AGAAA-TTACCAAAATGCCCTTTCCATTATATGATAA
* * * * * * * * *
9228230 GAAATTAACATGTGGTCAAATGAAGTATTAT-TCTCTCATACCATAATTACGAAATTGCCCAAT-
64 GAAATTGACATGTGGCCAAATGGACTATTATGTC-CTTATATCATAATTACGAAAATACCC-CTC
*
9228293 CTC
127 CTT
* * ** *** *
9228296 TTA-AATTATTTACTAAATAATCTCTTAAGAAATTATTAAAATGATATTTTCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCCCAT-AGAAATTACCAAAATGCCCTTTCCATTATATGATAAG
** ** *** * * ** ** * ** *
9228360 AAATAAACATGTGGCCAAATTTACTATTACACCCTCATACCATAATTATAAAAATATGCTTTGTC
65 AAATTGACATGTGGCCAAATGGACTATTATGTCCTTATATCATAATTACGAAAATACCCCTCCTT
*** * * * *
9228425 TTATAATTATTTACTAAATAATCTTTTATGAAATTTCCAAACTACTCTTTCCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCCCATA-GAAATTACCAAAATGCCCTTTCCATTATATGATAAG
* * * * * * * * *
9228490 AAATTAACATGTGGCTAAATGAACTATTATGTCATAATATCATAATTACGAAAATACTCATTCTC
65 AAATTGACATGTGGCCAAATGGACTATTATGTCCTTATATCATAATTACGAAAATACCCCTCCTT
* * * * ** *
9228555 TTATAAATTTTTTTAATAAATAATTCCCTATA-AAATTATCAAAATACATTTTCCAATATATGAT
1 TTAT-AA-TTATTTACTAAATAA-TCCC-ATAGAAATTACCAAAATGCCCTTTCCATTATATGAT
** * ** * * *
9228619 AAGAAATTGACATGAAGCCAAATAGACTAGCAT-TCCCTCATA-CTATAATTA-TAAAAGTA-TC
62 AAGAAATTGACATGTGGCCAAATGGACTATTATGT-CCTTATATC-ATAATTACGAAAA-TACCC
* * *
9228680 ATTCTC
124 CTCCTT
* * * * ** * * *
9228686 TTATTATTATTTACTAAATAATCCCTTAAGAAATTATCAAAATACTTTTTTCAATATATAATAAG
1 TTATAATTATTTACTAAATAATCCCAT-AGAAATTACCAAAATGCCCTTTCCATTATATGATAAG
*
9228751 AAATTGACATGAGGCCA
65 AAATTGACATGTGGCCA
9228768 TACAAAAATA
Statistics
Matches: 881, Mismatches: 200, Indels: 81
0.76 0.17 0.07
Matches are distributed among these distances:
127 1 0.00
128 31 0.04
129 246 0.28
130 465 0.53
131 52 0.06
132 82 0.09
133 2 0.00
134 2 0.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.37
Consensus pattern (129 bp):
TTATAATTATTTACTAAATAATCCCATAGAAATTACCAAAATGCCCTTTCCATTATATGATAAGA
AATTGACATGTGGCCAAATGGACTATTATGTCCTTATATCATAATTACGAAAATACCCCTCCTT
Found at i:9227950 original size:260 final size:260
Alignment explanation
Indices: 9227517--9228708 Score: 914
Period size: 260 Copynumber: 4.6 Consensus size: 260
9227507 CCCTTTTCCA
* * *
9227517 TTATAATTACTTACTAAATAATCCCTTATAAAATTACCAAAATGCCATTTCAATTATATGATAA-
1 TTATAATTACTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTATATGATAAG
* ** * * * ** *
9227581 AAAGTTGATATGTAACTGAA-TGAACTATTATGCCCTTATA-CTATAATTATGAAAATATTCTTT
66 AAA-TTGATATGTGACCAAATTG-ACTATTATACCCTCATATC-ATAATTACGAAAATACCCCTT
* * * * * *
9227644 CTAC-TAT-ATTGTTTCCTAAATAATC-CTTCAAGAAAAATATTAAAATGCCCTTCCCATTATAT
128 CT-CTTATAATTATTTACTAAATAATCTC-TC-ATAAAATTACTAAAATGCCCTTTCCATTATAT
* * * * *
9227706 GATAA-AAAGTTGACAGGTGGCCAAATGGACTATTATGTCATTATATCATAATTACAAAAATACC
190 GATAAGAAA-TTAACATGTGGCCAAATGAACTATTATGTCATAATATCATAATTACGAAAATACC
9227770 TCTCCTT
254 TCTCCTT
* * * * * *
9227777 TTATAATAACTTACAAAATAATCCCATATGAATTTACCAAAATGGCC-TTTCCATTAAATGATAA
1 TTATAATTACTTACTAAATAATCCCTTATGAAATTACCAAAAT-ACCATTTCCATTATATGATAA
*
9227841 GAAATTGATATGTGACCAAATTGACTATTATATCCTCATATCATAATTACGAAAATACCCCTTCT
65 GAAATTGATATGTGACCAAATTGACTATTATACCCTCATATCATAATTACGAAAATACCCCTTCT
* * *
9227906 CTTTTAATTATTTACTAAATAATCTCTCATAAAATTACTAAAATGCCATTTTCC-TTATTTGATA
130 CTTATAATTATTTACTAAATAATCTCTCATAAAATTACTAAAATGCC-CTTTCCATTATATGATA
* * * * * *
9227970 AGAAATTGACACATGT--TCAAATGGATTATTATGCCCTAATAAT-ATAATTATGAAAAT---TC
194 AGAAATT-A-ACATGTGGCCAAATGAACTATTATGTCATAAT-ATCATAATTACGAAAATACCTC
*
9228029 TCTTT
256 TCCTT
* * * * * *
9228034 GGCTTATAATTATTTACTAAATAATCCTTTATGAAATTACCTAAATACCATTACGAGTATATGAT
1 ---TTATAATTACTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTATATGAT
* * * * *
9228099 AAGGAATTGACCTATG-G-CCAAATGGACTATTATGCTCTTATATCATAATTACGAAAATACCCC
63 AAGAAATTGA--TATGTGACCAAATTGACTATTATACCCTCATATCATAATTACGAAAATACCCC
* * * * *
9228162 ATCTCTTATAATCATTTACTAAATAATCCCTCA-AAATTTACTAAAATGCCCTTTCCATTATATA
126 TTCTCTTATAATTATTTACTAAATAATCTCTCATAAAATTACTAAAATGCCCTTTCCATTATATG
* * * * * * *
9228226 ATAAGAAATTAACATGTGGTCAAATGAAGTATTAT-TCTCTCATACCATAATTACGAAATTGCC-
191 ATAAGAAATTAACATGTGGCCAAATGAACTATTATGTC-ATAATATCATAATTACGAAAATACCT
*
9228289 CAAT-CTC
255 C--TCCTT
* * * ** * *
9228296 TTA-AATTATTTACTAAATAATCTCTTAAGAAATTATTAAAATGA-TATTTTCATTATATGATAA
1 TTATAATTACTTACTAAATAATCCCTTATGAAATTACCAAAAT-ACCATTTCCATTATATGATAA
** * * * * * ** ** * *
9228359 GAAATAAACATGTGGCCAAATTTACTATTACACCCTCATACCATAATTATAAAAATATGCTTTGT
65 GAAATTGATATGTGACCAAATTGACTATTATACCCTCATATCATAATTACGAAAATACCCCTTCT
* * * * * * * *
9228424 CTTATAATTATTTACTAAATAATCTTTTATGAAATTTCCAAACTACTCTTTCCATTATATGATAA
130 CTTATAATTATTTACTAAATAATCTCTCATAAAATTACTAAAATGCCCTTTCCATTATATGATAA
* *
9228489 GAAATTAACATGTGGCTAAATGAACTATTATGTCATAATATCATAATTACGAAAATA-CTCATTC
195 GAAATTAACATGTGGCCAAATGAACTATTATGTCATAATATCATAATTACGAAAATACCTC-TCC
*
9228553 TC
259 TT
** * * * *
9228555 TTATAAATTTTTTTAATAAATAATTCCC-TATAAAATTATCAAAATA-CATTTTCCAATATATGA
1 TTAT-AA-TTACTTACTAAATAA-TCCCTTATGAAATTACCAAAATACCA-TTTCCATTATATGA
* * * ** * * *
9228618 TAAGAAATTGACATG-AAGCCAAATAGACTAGCATTCCCTCATA-CTATAATTA-TAAAAGTA-T
62 TAAGAAATTGATATGTGA-CCAAATTGACTATTATACCCTCATATC-ATAATTACGAAAA-TACC
* *
9228679 CATTCTCTTATTATTATTTACTAAATAATC
124 CCTTCTCTTATAATTATTTACTAAATAATC
9228709 CCTTAAGAAA
Statistics
Matches: 745, Mismatches: 144, Indels: 85
0.76 0.15 0.09
Matches are distributed among these distances:
256 3 0.00
257 13 0.02
258 124 0.17
259 148 0.20
260 288 0.39
261 74 0.10
262 91 0.12
263 4 0.01
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.37
Consensus pattern (260 bp):
TTATAATTACTTACTAAATAATCCCTTATGAAATTACCAAAATACCATTTCCATTATATGATAAG
AAATTGATATGTGACCAAATTGACTATTATACCCTCATATCATAATTACGAAAATACCCCTTCTC
TTATAATTATTTACTAAATAATCTCTCATAAAATTACTAAAATGCCCTTTCCATTATATGATAAG
AAATTAACATGTGGCCAAATGAACTATTATGTCATAATATCATAATTACGAAAATACCTCTCCTT
Found at i:9228445 original size:388 final size:385
Alignment explanation
Indices: 9227701--9228754 Score: 1058
Period size: 388 Copynumber: 2.7 Consensus size: 385
9227691 CCCTTCCCAT
* ** *
9227701 TATATGATAA-AAAGTTGACAGGTGGCCAAATGGACTATTATGTCATTATATCATAATTACAAAA
1 TATATGATAAGAAA-TTAACATATGGCCAAATGGACTATTATGTCATTATATCATAATTACGAAA
* * * * * *
9227765 ATACCTC-TCCTTTTATAATAACTTACAAAATAATCCCATATGAATTTACCAAAATGGCCTTTCC
65 ATACCTCAT-CTCTTATAATAATTTACTAAATAATCCC-TATAAATTTACTAAAATGCCCTTTCC
* * * *
9227829 ATTAAATGATAAGAAATTGATATGTGACCAAATTG-ACTATTATATCCTCATATCATAATTACGA
128 ATTATATGATAAGAAATTGACATGTGGCCAAA-TGAACTATTAT-TCCTCATACCATAATTACGA
* * * * **
9227893 AAATACCCCTTCTCTTTTAATTATTTACTAAATAATCTCTCATA-AAATTACTAAAATGCCATTT
191 AAAT-CCCATTCTC-TTAAATTATTTACTAAATAATCTCTTA-AGAAATTATTAAAATGATATTT
* * * * * ** * *
9227957 TCCTTATTTGATAAGAAATTGACACATGTTCAAATGGATTATTATGCCCTAATAATATAATTATG
253 TCATTATATGATAAGAAA-TGAAACATGTCCAAATGGACTATTACACCCTAATAACATAATTATA
*
9228022 AAAATTCTCTTTGGCTTATAATTATTTACTAAATAATCCTTTATGAAATTACCTAAA-TAC-CAT
317 AAAATTCGCTTTGGCTTATAATTATTTACTAAATAATCCTTTATGAAATTACC-AAACTACTC-T
*
9228085 TACGAG
380 TACCAG
* * *
9228091 TATATGATAAGGAATTGACCTATGGCCAAATGGACTATTATGCTC-TTATATCATAATTACGAAA
1 TATATGATAAGAAATTAACATATGGCCAAATGGACTATTATG-TCATTATATCATAATTACGAAA
* *
9228155 ATACCCCATCTCTTATAATCATTTACTAAATAATCCCTCA-AAATTTACTAAAATGCCCTTTCCA
65 ATACCTCATCTCTTATAATAATTTACTAAATAATCCCT-ATAAATTTACTAAAATGCCCTTTCCA
* * * *
9228219 TTATATAATAAGAAATTAACATGTGGTCAAATGAAGTATTATTCTCTCATACCATAATTACGAAA
129 TTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATTC-CTCATACCATAATTACGAAA
* *
9228284 TTGCCCAATCTCTTAAATTATTTACTAAATAATCTCTTAAGAAATTATTAAAATGATATTTTCAT
193 AT-CCCATTCTCTTAAATTATTTACTAAATAATCTCTTAAGAAATTATTAAAATGATATTTTCAT
** * *
9228349 TATATGATAAGAAAT-AAACATGTGGCCAAATTTACTATTACACCCTCATACCATAATTATAAAA
257 TATATGATAAGAAATGAAACATGT--CCAAATGGACTATTACACCCTAATAACATAATTATAAAA
* * * *
9228413 ATAT-GCTTTGTCTTATAATTATTTACTAAATAATCTTTTATGAAATTTCCAAACTACTCTTTCC
320 AT-TCGCTTTGGCTTATAATTATTTACTAAATAATCCTTTATGAAATTACCAAACTACTCTTACC
*
9228477 AT
384 AG
* * * *
9228479 TATATGATAAGAAATTAACATGTGGCTAAATGAACTATTATGTCATAATATCATAATTACGAAAA
1 TATATGATAAGAAATTAACATATGGCCAAATGGACTATTATGTCATTATATCATAATTACGAAAA
** * * * **
9228544 TA-CTCATTCTCTTATAAATTTTTTTAATAAATAATTCCCTATAAAATTA-TCAAAATACATTTT
66 TACCTCA-TCTCTTAT-AA-TAATTTACTAAATAA-TCCCTATAAATTTACT-AAAATGCCCTTT
* ** ** *
9228607 CCAATATATGATAAGAAATTGACATGAAGCCAAAT-AGACTAGCATTCCCTCATACTATAATTA-
126 CCATTATATGATAAGAAATTGACATGTGGCCAAATGA-ACTATTATT-CCTCATACCATAATTAC
* ** * * * *
9228670 TAAAAGTATCATTCTCTTATTATTATTTACTAAATAATCCCTTAAGAAATTATCAAAAT-ACTTT
189 GAAAA-TCCCATTCTCTTA-AATTATTTACTAAATAATCTCTTAAGAAATTATTAAAATGA-TAT
* *
9228734 TTTCAATATATAATAAGAAAT
251 TTTCATTATATGATAAGAAAT
9228755 TGACATGAGG
Statistics
Matches: 554, Mismatches: 86, Indels: 47
0.81 0.13 0.07
Matches are distributed among these distances:
386 7 0.01
387 10 0.02
388 207 0.37
389 85 0.15
390 112 0.20
391 132 0.24
392 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.37
Consensus pattern (385 bp):
TATATGATAAGAAATTAACATATGGCCAAATGGACTATTATGTCATTATATCATAATTACGAAAA
TACCTCATCTCTTATAATAATTTACTAAATAATCCCTATAAATTTACTAAAATGCCCTTTCCATT
ATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATTCCTCATACCATAATTACGAAAATC
CCATTCTCTTAAATTATTTACTAAATAATCTCTTAAGAAATTATTAAAATGATATTTTCATTATA
TGATAAGAAATGAAACATGTCCAAATGGACTATTACACCCTAATAACATAATTATAAAAATTCGC
TTTGGCTTATAATTATTTACTAAATAATCCTTTATGAAATTACCAAACTACTCTTACCAG
Found at i:9229082 original size:129 final size:129
Alignment explanation
Indices: 9228888--9229402 Score: 533
Period size: 129 Copynumber: 4.0 Consensus size: 129
9228878 TTCTCTAACA
** * * *
9228888 CCATAATTATGAAAATACCCTTTTGC-TATAATTATTTATTGAATAATCCCTTATGAAATTACCA
1 CCATAATTACAAAAATACCCTTTTGCTTATAATTATTTACTAAATAATCTCTTATGAAATTACCA
* * * * * *
9228952 AAATGCCCTTTACATTATATGATAAGAAACTGACATGTGGCCAAATGGATTATTATGCCCTCTG
66 AAATACCTTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTCTG
** *
9229016 CCATAATTACAAAAATATGCTTTTGCTTATAATTATTTACTAAATAATCT-TCTAGGAAATTACC
1 CCATAATTACAAAAATACCCTTTTGCTTATAATTATTTACTAAATAATCTCT-TATGAAATTACC
* * *
9229080 AAAAT-GCTTTTTCTATTATATGATAAGAAATTGACATGTAGTCAAATTGACTATTATG-CCTCA
65 AAAATACCTTTTTC-ATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTC-
9229143 TG
128 TG
** * *
9229145 CCATAATTATGAAAATA-ACTTTTCTCTTATAATTATTTA-TAAAATAATCTCTTATGAAATTAC
1 CCATAATTACAAAAATACCCTTTT-GCTTATAATTATTTACT-AAATAATCTCTTATGAAATTAC
* * * * ** **
9229208 CAAAATACTTTTTTCATTATATGATAAGAATTTGACTTGTGGCCAAATTTACTATTATGTCCCAA
64 CAAAATACCTTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATG-CCCTC
*
9229273 TA
128 TG
* * * * **
9229275 TCATAAATACAAAAATACCCATTCT-CTTATAATTATTTACTGAATAATCAATTATGAAATTACC
1 CCATAATTACAAAAATACCC-TTTTGCTTATAATTATTTACTAAATAATCTCTTATGAAATTACC
* * * * *
9229339 AAAACACCTTTTTCAATATATGATAA-AACATTGACAAGTAGCCAAATGGACTTTTATGACCTCT
65 AAAATACCTTTTTCATTATATGATAAGAA-ATTGACATGTAGCCAAATGGACTATTATGCCCTCT
9229403 TATGCCTTCC
Statistics
Matches: 320, Mismatches: 53, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
128 38 0.12
129 175 0.55
130 100 0.31
131 4 0.01
132 3 0.01
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (129 bp):
CCATAATTACAAAAATACCCTTTTGCTTATAATTATTTACTAAATAATCTCTTATGAAATTACCA
AAATACCTTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTCTG
Found at i:9229228 original size:258 final size:259
Alignment explanation
Indices: 9228888--9229401 Score: 628
Period size: 259 Copynumber: 2.0 Consensus size: 259
9228878 TTCTCTAACA
* **
9228888 CCATAATTATGAAAATACCCTTTTGCTATAATTATTTATTGAATAATCCCTTATGAAATTACCAA
1 CCATAATTATGAAAATACACTTTTGCTATAATTATTTATAAAATAATCCCTTATGAAATTACCAA
* * ** *
9228953 AATGCCCTTTACATTATATGATAAGAAACTGACATGTGGCCAAATGGATTATTATG-CCCTCTGC
66 AATACCCTTTACATTATATGATAAGAAACTGACATGTGGCCAAATGGACTATTATGTCCCAATAC
* ** * *
9229017 CATAATTACAAAAATATGC-TTTTGCTTATAATTATTTACTAAATAATC-TTCTAGGAAATTACC
131 CATAAATACAAAAATACCCATTCT-CTTATAATTATTTACTAAATAATCAAT-TAGGAAATTACC
** * * * *
9229080 AAAA-TGCTTTTTCTATTATATGATAAGAA-ATTGACATGTAGTCAAATTGACTATTATG-CCTC
194 AAAACACCTTTTTC-AATATATGATAA-AACATTGACAAGTAGCCAAATGGACTATTATGACCTC
9229142 ATG
257 ATG
* *
9229145 CCATAATTATGAAAATA-ACTTTTCTCTTATAATTATTTATAAAATAATCTCTTATGAAATTACC
1 CCATAATTATGAAAATACACTTTT-GC-TATAATTATTTATAAAATAATCCCTTATGAAATTACC
** * ** * **
9229209 AAAATACTTTTTTCATTATATGATAAGAATTTGACTTGTGGCCAAATTTACTATTATGTCCCAAT
64 AAAATACCCTTTACATTATATGATAAGAAACTGACATGTGGCCAAATGGACTATTATGTCCCAAT
* * *
9229274 ATCATAAATACAAAAATACCCATTCTCTTATAATTATTTACTGAATAATCAATTATGAAATTACC
129 ACCATAAATACAAAAATACCCATTCTCTTATAATTATTTACTAAATAATCAATTAGGAAATTACC
*
9229339 AAAACACCTTTTTCAATATATGATAAAACATTGACAAGTAGCCAAATGGACTTTTATGACCTC
194 AAAACACCTTTTTCAATATATGATAAAACATTGACAAGTAGCCAAATGGACTATTATGACCTC
9229402 TTATGCCTTC
Statistics
Matches: 216, Mismatches: 33, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
256 5 0.02
257 18 0.08
258 84 0.39
259 94 0.44
260 15 0.07
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (259 bp):
CCATAATTATGAAAATACACTTTTGCTATAATTATTTATAAAATAATCCCTTATGAAATTACCAA
AATACCCTTTACATTATATGATAAGAAACTGACATGTGGCCAAATGGACTATTATGTCCCAATAC
CATAAATACAAAAATACCCATTCTCTTATAATTATTTACTAAATAATCAATTAGGAAATTACCAA
AACACCTTTTTCAATATATGATAAAACATTGACAAGTAGCCAAATGGACTATTATGACCTCATG
Found at i:9229680 original size:130 final size:127
Alignment explanation
Indices: 9229409--9230731 Score: 596
Period size: 130 Copynumber: 10.4 Consensus size: 127
9229399 CTCTTATGCC
* * * * * * *
9229409 TTCCATTATATGATAAGAAATTAACATTTCCTTAAATGGATTATTATGCCCTT-ATACCATAGA-
1 TTCCATTATATGATAAGAATTTGACATGT-GTCAAATGGACTATTATG-CCTTCATACAATA-AT
** * ** * *
9229472 TACAAAAATA-CCAATTTTATAATTATTTACTAAATAATCCCTTATGAAATTA-TCAAAATAACC
63 TACAAAAATACCCTTTTTTATAATTGTTTACTAAATAATTACTTAAGAAATTACT-AAAAT-GCC
9229535 A-
126 AT
* * * * * * *
9229536 TCCCAATATATGATAAGAATTTGACATGTGCCAAAATGGACTATTATACTTTCATACCATAATAA
1 TTCCATTATATGATAAGAATTTGACATGTGTC-AAATGGACTATTATGCCTTCATACAATAATTA
* * * *
9229601 CGAAAGTATCCCTTTTCTTATAATTGTTTACCAAATAATTACTCAAGAAATTACTAAAATGCCAT
65 CAAAAATA-CCCTTTT-TTATAATTGTTTACTAAATAATTACTTAAGAAATTACTAAAATGCCAT
* ** * * *
9229666 TTCCATTATTTGATAAGAAACTGACGTGTGGTCAAATTGACT-TTCATGCCTTAATACAATAATT
1 TTCCATTATATGATAAGAATTTGACATGT-GTCAAATGGACTATT-ATGCCTTCATACAATAATT
* * * *
9229730 ATAAAAATACCC-CTTTTATAATTGTTTACTAAATAATCACTTAAGAAATTA-TCAAAATGCCTT
64 ACAAAAATACCCTTTTTTATAATTGTTTACTAAATAATTACTTAAGAAATTACT-AAAATGCCAT
** * * * * *
9229793 TTTTATTAGATGTTAAAAATTTGACATGGGATCAAATGGACTATTATGCCTTCATACTATAATTA
1 TTCCATTATATGATAAGAATTTGACATGTG-TCAAATGGACTATTATGCCTTCATACAATAATTA
* * * * * *
9229858 CAAAAATACCCTTATTTTATAATTATTTACTAAATAATCT-CTTATGAAATTACCAAAATACTAC
65 CAAAAATACCCTT-TTTTATAATTGTTTACTAAATAAT-TACTTAAGAAATTACTAAAATGCCAT
* * * * *
9229922 TTCCATTATATAAGAAGAAATTGATATGTGGTCAAATGGAC--TTA-----T-A-CCAA-AATTA
1 TTCCATTATATGATAAGAATTTGACATGT-GTCAAATGGACTATTATGCCTTCATACAATAATTA
** * * * * * * * * **
9229977 TGAAAGTACGCTTCATTTATAATTATTCACTAAAAAATTTCTTATA-AAATTACTAAAATACCCG
65 CAAAAATACCCTT-TTTTATAATTGTTTACTAAATAATTACTTA-AGAAATTACTAAAATGCCAT
* * * * * * * *
9230041 TTCCATTATATGACAAGAAATTGATATGTAGCCAAATGGAATGTTATGCCCTCATACCATAATTA
1 TTCCATTATATGATAAGAATTTGACATGT-GTCAAATGGACTATTATGCCTTCATACAATAATTA
** * ** * * ** * *
9230106 TGAAAATATCTCTTCTTTTATCTTTATTTACTACATAATCCCTAAAAAAATTA-TCAAATAT-CC
65 CAAAAATA-CCCTT-TTTTATAATTGTTTACTAAATAATTACTTAAGAAATTACT-AAA-ATGCC
9230169 -T
126 AT
* * * * * * * *
9230170 TTCTATTATATGATATGAAATTGACATGTGACCAAAAGGACAATTTTGCCCTT-ATACCATAATT
1 TTCCATTATATGATAAGAATTTGACATGTG-TCAAATGGACTATTATG-CCTTCATACAATAATT
* * ** * * * * *
9230234 ACAAAAATA-CCTTTCTCTTATAATTATTTAATAAATAATCCCTCATGAAATTACCAAAATACCT
64 ACAAAAATACCCTTT-T-TTATAATTGTTTACTAAATAATTACTTAAGAAATTACTAAAATGCCA
9230298 T
127 T
* * * * * ** * * *
9230299 TTTCATTGTATGATAGGAAATTCTTATATG-ACCAAAT-GA-TATTAT-TCTCTAAAAC-ATAAT
1 TTCCATTATATGATAAG-AATT-TGACATGTGTCAAATGGACTATTATGCCT-TCATACAATAAT
** * ** * *
9230359 TACAAAAATACTTTTCTTTTATAATTATTTACTAAATAATGCCCTATA-AAATTACCAAAATGCC
63 TACAAAAATACCCTT-TTTTATAATTGTTTACTAAATAATTACTTA-AGAAATTACTAAAATGCC
9230423 AT
126 AT
* * * * *
9230425 TTCCATTATCTGATAAGAAGTTGATATGTAGTCAAATGAACTATTATGCCTTTATATC-ATAATT
1 TTCCATTATATGATAAGAATTTGACATGT-GTCAAATGGACTATTATGCCTTCATA-CAATAATT
*** * * ** * * **
9230489 TTGAAAATATTCCTTCTATTATAATTGCGTACT-AATAATCA-TTCAAAAAAAAAACTAAAATGC
64 ACAAAAATA-CCCTT-TTTTATAATTGTTTACTAAATAATTACTT--AAGAAATTACTAAAATGC
*
9230552 CCT
125 CAT
* * * * * * *
9230555 TTCCATTATATGATAAGAAATTGATATGTAGCCAAATGTATTATTATGCCCTCATACCATAATTA
1 TTCCATTATATGATAAGAATTTGACATGT-GTCAAATGGACTATTATGCCTTCATACAATAATTA
** ** * * * * *
9230620 TGAAAATATCCCTTCTCATATAATTATTTACAAAATAATT-CTTATGAATTTACCAAAATGACC-
65 CAAAAATA-CCCTT-TTTTATAATTGTTTACTAAATAATTACTTAAGAAATTACTAAAATG-CCA
9230683 T
127 T
* * * * * * *
9230684 TACCATTAAATGATATGAAATTGATATG-GCCAAATTGACTATTATGCC
1 TTCCATTATATGATAAGAATTTGACATGTGTCAAATGGACTATTATGCC
9230732 CTCTTTTAAT
Statistics
Matches: 923, Mismatches: 211, Indels: 124
0.73 0.17 0.10
Matches are distributed among these distances:
118 1 0.00
119 89 0.10
120 2 0.00
121 4 0.00
122 1 0.00
124 6 0.01
125 5 0.01
126 82 0.09
127 189 0.20
128 54 0.06
129 229 0.25
130 243 0.26
131 18 0.02
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.37
Consensus pattern (127 bp):
TTCCATTATATGATAAGAATTTGACATGTGTCAAATGGACTATTATGCCTTCATACAATAATTAC
AAAAATACCCTTTTTTATAATTGTTTACTAAATAATTACTTAAGAAATTACTAAAATGCCAT
Found at i:9229957 original size:129 final size:129
Alignment explanation
Indices: 9229408--9230731 Score: 774
Period size: 129 Copynumber: 10.4 Consensus size: 129
9229398 CCTCTTATGC
* * * *
9229408 CTTCCATTATATGATAAGAAATTAACAT-T-TCCTTAAATGGATTATTATGCCCTT-ATACCATA
1 CTTCCATTATATGATAAGAAATTGATATGTGGCC--AAATGGACTATTATG-CCTTCATACCATA
** * *
9229470 GA-TACAAAAATA-CC-AATTTTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAAATA
63 -ATTACAAAAATACCCTTCTTTTATAATTATTTACTAAATAATCTCTTATGAAATTACCAAAAT-
*
9229532 ACCA
126 ACTA
* * * * * *
9229536 -TCCCAATATATGATAAGAATTTGACATGT-GCCAAAATGGACTATTATACTTTCATACCATAAT
1 CTTCCATTATATGATAAGAAATTGATATGTGGCC-AAATGGACTATTATGCCTTCATACCATAAT
* * * * * * * * *
9229599 AACGAAAGTATCCCTT-TTCTTATAATTGTTTACCAAATAAT-TACTCAAGAAATTACTAAAATG
65 TACAAAAATA-CCCTTCTT-TTATAATTATTTACTAAATAATCT-CTTATGAAATTACCAAAATA
*
9229662 CCA
127 CTA
* * * ** * * * *
9229665 TTTCCATTATTTGATAAGAAACTGACGTGTGGTCAAATTGACT-TTCATGCCTTAATACAATAAT
1 CTTCCATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATT-ATGCCTTCATACCATAAT
* * * * * *
9229729 TATAAAAATACCC--CTTTTATAATTGTTTACTAAATAATCACTTAAGAAATTATCAAAATGCCT
65 TACAAAAATACCCTTCTTTTATAATTATTTACTAAATAATCTCTTATGAAATTACCAAAAT-ACT
9229792 -
129 A
* ** * * * * *
9229792 TTTTTATTAGATGTTAA-AAATTTGACATG-GGATCAAATGGACTATTATGCCTTCATACTATAA
1 CTTCCATTATATGATAAGAAA-TTGATATGTGG-CCAAATGGACTATTATGCCTTCATACCATAA
*
9229855 TTACAAAAATACCCTTATTTTATAATTATTTACTAAATAATCTCTTATGAAATTACCAAAATACT
64 TTACAAAAATACCCTTCTTTTATAATTATTTACTAAATAATCTCTTATGAAATTACCAAAATACT
9229920 A
129 A
* * * *
9229921 CTTCCATTATATAAGAAGAAATTGATATGTGGTCAAATGG------A---CTT-ATACCAAAATT
1 CTTCCATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATTATGCCTTCATACCATAATT
** * * * * * * * * *
9229976 ATGAAAGTACGCTTCATTTATAATTATTCACTAAAAAATTTCTTATAAAATTACTAAAATAC-C
66 ACAAAAATACCCTTCTTTTATAATTATTTACTAAATAATCTCTTATGAAATTACCAAAATACTA
* * * * *
9230039 CGTTCCATTATATGACAAGAAATTGATATGTAGCCAAATGGAATGTTATGCCCTCATACCATAAT
1 C-TTCCATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATTATGCCTTCATACCATAAT
** * ** * * * ** *
9230104 TATGAAAATATCTCTTCTTTTATCTTTATTTACTACATAATCCCTAAAAAAATTATC-AAATA-T
65 TACAAAAATA-CCCTTCTTTTATAATTATTTACTAAATAATCTCTTATGAAATTACCAAAATACT
*
9230167 C
129 A
* * * * * * *
9230168 CTTTCTATTATATGATATGAAATTGACATGTGACCAAAAGGACAATTTTGCCCTT-ATACCATAA
1 C-TTCCATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATTATG-CCTTCATACCATAA
* * * * *
9230232 TTACAAAAATACCTTTCTCTTATAATTATTTAATAAATAATCCCTCATGAAATTACCAAAATACC
64 TTACAAAAATACCCTTCTTTTATAATTATTTACTAAATAATCTCTTATGAAATTACCAAAATA-C
9230297 T-
128 TA
* * * * ** * * * * *
9230298 TTTTCATTGTATGATAGGAAATTCTTATATGACCAAAT-GA-TATTAT-TC-TCTAAAACATAAT
1 CTTCCATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATTATGCCTTC-ATACCATAAT
** * * * *
9230359 TACAAAAATACTTTTCTTTTATAATTATTTACTAAATAATGC-CCTATAAAATTACCAAAATGCC
65 TACAAAAATACCCTTCTTTTATAATTATTTACTAAATAAT-CTCTTATGAAATTACCAAAATACT
9230423 A
129 A
* * * * * * * *
9230424 TTTCCATTATCTGATAAGAAGTTGATATGTAGTCAAATGAACTATTATGCCTTTATATCATAATT
1 CTTCCATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATTATGCCTTCATACCATAATT
*** * * *** * ** ** * *
9230489 TTGAAAATATTCCTTCTATTATAATTGCGTACT-AATAATCAT-TCAAAAAAAAAACTAAAATGC
66 ACAAAAATA-CCCTTCTTTTATAATTATTTACTAAATAATC-TCT-TATGAAATTACCAAAATAC
*
9230552 -C
128 TA
* * * *
9230553 CTTTCCATTATATGATAAGAAATTGATATGTAGCCAAATGTATTATTATGCCCTCATACCATAAT
1 C-TTCCATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATTATGCCTTCATACCATAAT
** ** * *
9230618 TATGAAAATATCCCTTCTCATATAATTATTTACAAAATAAT-TCTTATGAATTTACCAAAATGAC
65 TACAAAAATA-CCCTTCTTTTATAATTATTTACTAAATAATCTCTTATGAAATTACCAAAAT-AC
9230682 --
128 TA
* * *
9230682 CTTACCATTAAATGATATGAAATTGATA--TGGCCAAATTGACTATTATGCC
1 CTT-CCATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATTATGCC
9230732 CTCTTTTAAT
Statistics
Matches: 924, Mismatches: 216, Indels: 113
0.74 0.17 0.09
Matches are distributed among these distances:
118 1 0.00
119 95 0.10
120 3 0.00
123 1 0.00
124 1 0.00
125 3 0.00
126 97 0.10
127 168 0.18
128 58 0.06
129 247 0.27
130 241 0.26
131 9 0.01
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (129 bp):
CTTCCATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATTATGCCTTCATACCATAATT
ACAAAAATACCCTTCTTTTATAATTATTTACTAAATAATCTCTTATGAAATTACCAAAATACTA
Found at i:9230975 original size:130 final size:129
Alignment explanation
Indices: 9230739--9230984 Score: 318
Period size: 130 Copynumber: 1.9 Consensus size: 129
9230729 GCCCTCTTTT
* * * * * *
9230739 AATTATTTACTAAATAATGCTTCATGAAATTACTAAAATGCCTTTTCCCTTATTTGATAAGAAAT
1 AATTATTTACTAAATAATCCTTCA-GAAATTACCAAAATACCATTTCCATTATATGATAAGAAAT
** *
9230804 TAACACGTGGTTAAATAAACTATTATGCCATCATAATATAATTACAAAAATTCTTTTAGGTTTAG
65 TAACACGTGGCCAAATAAACTATTATGCCATCATAAGATAATTACAAAAATTCTTTTAGGTTTAG
9230869 AATTATTTACTAAATAATCCCTTACA-AAATTACCAAAATACCATTTCCATTATATGATAAGAAA
1 AATTATTTACTAAATAAT-CCTT-CAGAAATTACCAAAATACCATTTCCATTATATGATAAGAAA
* * *
9230933 TTGACATGTGGCCAAATGAAA-TATTATGCTC-TCATAGGATAATTACAAAAAT
64 TTAACACGTGGCCAAAT-AAACTATTATGC-CATCATAAGATAATTACAAAAAT
9230985 ACCCCTTCTA
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
130 91 0.91
131 7 0.07
132 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.35
Consensus pattern (129 bp):
AATTATTTACTAAATAATCCTTCAGAAATTACCAAAATACCATTTCCATTATATGATAAGAAATT
AACACGTGGCCAAATAAACTATTATGCCATCATAAGATAATTACAAAAATTCTTTTAGGTTTAG
Found at i:9231006 original size:130 final size:128
Alignment explanation
Indices: 9230742--9231056 Score: 302
Period size: 130 Copynumber: 2.4 Consensus size: 128
9230732 CTCTTTTAAT
* * * * * *
9230742 TATTTACTAAATAAT-GCTT-CATGAAATTACTAAAATGCCTTTTCCCTTATTTGATAAGAAATT
1 TATTTACTAAATAATCCCTTACA--AAATTACCAAAATACCATTTCCATTATATGATAAGAAATT
** * * *
9230805 AACACGTGGTTAAATAAACTATTATGCCATCATAATATAATTACAAAAATTCTTTTAGGTTTAGA
64 AACACGTGGCCAAATAAACTATTATGCCATCATAAGATAATTACAAAAATCCTTCTA-G-TTAGA
*
9230870 AT
127 AG
*
9230872 TATTTACTAAATAATCCCTTACAAAATTACCAAAATACCATTTCCATTATATGATAAGAAATTGA
1 TATTTACTAAATAATCCCTTACAAAATTACCAAAATACCATTTCCATTATATGATAAGAAATTAA
* * *
9230937 CATGTGGCCAAATGAAA-TATTATGCTC-TCATAGGATAATTACAAAAATACCCCTTCTA-TTAT
66 CACGTGGCCAAAT-AAACTATTATGC-CATCATAAGATAATTACAAAAAT---CCTTCTAGTTAG
9230999 AAG
126 AAG
* * ** *
9231002 TATTTTCTTAATAATCCCTTATGAAATTATCAAAATACCCA-TT-CATTATATGATA
1 TATTTACTAAATAATCCCTTACAAAATTACCAAAATA-CCATTTCCATTATATGATA
9231057 TACATTAAAA
Statistics
Matches: 156, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
129 12 0.08
130 127 0.81
131 10 0.06
132 2 0.01
133 5 0.03
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.37
Consensus pattern (128 bp):
TATTTACTAAATAATCCCTTACAAAATTACCAAAATACCATTTCCATTATATGATAAGAAATTAA
CACGTGGCCAAATAAACTATTATGCCATCATAAGATAATTACAAAAATCCTTCTAGTTAGAAG
Found at i:9231531 original size:123 final size:124
Alignment explanation
Indices: 9231288--9231534 Score: 309
Period size: 123 Copynumber: 2.0 Consensus size: 124
9231278 ATATCCATTT
* ** * *
9231288 TTTTATAATTATTTACTGAATAATCCTTAGTGAAATTTTCAAAATACGCTTTCCATTATAGGATA
1 TTTTATAATTATTTACTAAATAATCCTTAGTGAAATTACCAAAATACGCCTACCATTATAGGATA
* * *
9231353 AAAAATTGACATACGGCCATATGGACTATTATGCCCTCATACTATAATCACAAAAATAC
66 AAAAATTGACATACGGCCAAATAGACTATTATGCCCTCATACCATAATCACAAAAATAC
* * * * *
9231412 TTTTATAATTATTTACTAAATAATCTTTTA-TGAAATTACCAAAATATGCCTAGCATTTTATGAT
1 TTTTATAATTATTTACTAAATAATC-CTTAGTGAAATTACCAAAATACGCCTACCATTATAGGAT
* * * * *
9231476 -AAGAATTGACATGCGGCCAAATAGACTATTATTCTCTCATACCATAATTACAAAAATAC
65 AAAAAATTGACATACGGCCAAATAGACTATTATGCCCTCATACCATAATCACAAAAATAC
9231535 CCTTCTTTTA
Statistics
Matches: 104, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
123 51 0.49
124 50 0.48
125 3 0.03
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (124 bp):
TTTTATAATTATTTACTAAATAATCCTTAGTGAAATTACCAAAATACGCCTACCATTATAGGATA
AAAAATTGACATACGGCCAAATAGACTATTATGCCCTCATACCATAATCACAAAAATAC
Found at i:9232491 original size:130 final size:128
Alignment explanation
Indices: 9232165--9233251 Score: 781
Period size: 130 Copynumber: 8.4 Consensus size: 128
9232155 ATTGCCCATC
* * * * * ** ** * *
9232165 CCATTATTTGATAAAAAAGTGATATGTGTCCAAATATACTACCATGCCCTCATATGATAATTACA
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
* * * * * * * *
9232230 AAAATA-ACTTCTCTCTTATAATTACTTACCACATAATTGCCTA-GAAAATTACCAAAATTCCCT
66 AAAATACCCTT-T-TCTTATAATTATTTACTAAATAA-TCCCTATG-AAATTATCAAAATACCAT
9232293 TT
127 TT
* * * *
9232295 CACATTATA-CA-AA-AAATTGACATGTGGCCAAATTGACAATT-T-CACCTTCATATTATAATT
1 C-CATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGC-CC-TCATATCATAATT
*
9232355 ACGAAAATACCCATTTTCTTATAATTATATACTAAATAATCCCTAGTGAAAATT-TCAAAATACC
63 ACGAAAATACCC-TTTTCTTATAATTATTTACTAAATAATCCCTA-TG-AAATTATCAAAATACC
9232419 ATTT
125 ATTT
* * * * *
9232423 CCATTATATGATAAGAAATTGAAATGTGGCCAAAAGGACTATTATGCCATCATATCATAATCATG
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
* *
9232488 AAAATACCATTCTT-TTATAATTATTTACTAAATAATCACT-TAGAAATTATCAAAATACCCA-T
66 AAAATACCCTT-TTCTTATAATTATTTACTAAATAATCCCTAT-GAAATTATCAAAATA-CCATT
*
9232550 A
128 T
* * * * * * *
9232551 CCATTTTATGATATG-AATTGACATGTGGCCAAATAGACTATTATACTCTCATACCATAATTAAG
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
* * * * * *
9232615 AAAATACCCTTCTCTAATAATTATTCACTAACTAATCCTCTATGAAATTACCAAAATGCCCA-TT
66 AAAATACCCTTTTCTTATAATTATTTACTAAATAATCC-CTATGAAATTATCAAAAT-ACCATTT
* * ** * ** *
9232679 CCATTATACGATAAAAAATTGACATGTAACTAAATGGACTATTATGCCCTCATGCCATAATTACA
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
* * * * *
9232744 AAAATACCC-TTTCTTCTATAAATATTTACTAAATAATCCCT-TAAAAATTTACCAAAATGCCCT
66 AAAATACCCTTTTC-T-TATAATTATTTACTAAATAATCCCTAT-GAAA-TTATCAAAATACCAT
9232807 TT
127 TT
* * ** * * * * *
9232809 CTATTATATGTTTGGATATTGACATGTAGTCAAATTGA-TAATTATGCCCTCATATCATAATTAT
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATGGACT-ATTATGCCCTCATATCATAATTAC
* ** * * * ** *
9232873 GCAAATACCTCTCCTCTTTTAATCATTTACTATATAATCCCTTATGAAATTAAGAAAATATCATT
65 GAAAATACC-CTTTTCTTATAATTATTTACTAAATAATCCC-TATGAAATTATCAAAATACCATT
9232938 T
128 T
* * * * * * * * * * *
9232939 CCATTACATTATAAGAAATTGACATGTCGTCAAATGGATTGTTATGTCTTCATACCATACTTATG
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
* * * * * * * *
9233004 AAAATAGCCTTCTCTTATAATTATATACTACATAATCACTCAAGAAATTA-CTAAAATGCCTTTT
66 AAAATACCCTTTTCTTATAATTATTTACTAAATAATCCCT-ATGAAATTATC-AAAATACCATTT
* ** * * * * * *
9233068 CAATTATACAATAAGAAACTGACATGTGACCAAATTGACTATTATGCCTTTATATCATAATTACA
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
* * * *
9233133 AAAATACCTCTTCTT-TTATAATTGTTTACAAAATAATTCCT-TGTTAAATTATCAAAATGCCAT
66 AAAATACC-CTT-TTCTTATAATTATTTACTAAATAATCCCTATG--AAATTATCAAAATACCAT
9233196 TT
127 TT
** * *
9233198 CCATTATATGATAAGAAATTGACATGTGGCCAAATAAACTACTATGCACTCATA
1 CCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATA
9233252 CATTTTCCAT
Statistics
Matches: 750, Mismatches: 168, Indels: 78
0.75 0.17 0.08
Matches are distributed among these distances:
126 2 0.00
127 91 0.12
128 131 0.17
129 198 0.26
130 307 0.41
131 17 0.02
132 4 0.01
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (128 bp):
CCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
AAAATACCCTTTTCTTATAATTATTTACTAAATAATCCCTATGAAATTATCAAAATACCATTT
Found at i:9232775 original size:257 final size:258
Alignment explanation
Indices: 9232309--9232801 Score: 606
Period size: 256 Copynumber: 1.9 Consensus size: 258
9232299 TTATACAAAA
* ** * *
9232309 AATTGACATGTGGCCAAATTGACAATTTCACCTTCATATTATAATTACGAAAATACCCATTTTCT
1 AATTGACATGTGGCCAAATAGACAATTTCACCTTCATACCATAATTAAGAAAATACCCATTCTCT
* * * *
9232374 TATAATTATATACTAAATAATCCCTAGTGAAAATTTCAAAATACCATTTCCATTATATGATAAGA
66 AATAATTATATACTAAATAATCCCTAGTGAAAATTCCAAAATACCATTTCCATTATACGATAAAA
** * ** *
9232439 AATTGAAATGTGGCCAAAAGGACTATTATGCCATCATATCATAATCATGAAAATACCATTCTTTT
131 AATTGAAATGTAACCAAAAGGACTATTATGCCATCATACCATAATCACAAAAATACCATTCTTCT
* * *
9232504 ATAATTATTTACTAAATAATCACTTAGAAA-TTATCAAAATACCCATACCATTTTATGATATG
196 ATAAATATTTACTAAATAATCACTTAAAAATTTACCAAAATACCCATACCATTTTATGATATG
*
9232566 AATTGACATGTGGCCAAATAGACTATTAT-A-CTCTCATACCATAATTAAGAAAATACCC-TTCT
1 AATTGACATGTGGCCAAATAGACAATT-TCACCT-TCATACCATAATTAAGAAAATACCCATTCT
* *
9232628 CTAATAATTAT-TCACTAACTAATCCTCTA-TG-AAATTACCAAAATGCCCA-TTCCATTATACG
64 CTAATAATTATAT-ACTAAATAATCC-CTAGTGAAAATT-CCAAAAT-ACCATTTCCATTATACG
* * * * * * *
9232689 ATAAAAAATTGACATGTAACTAAATGGACTATTATGCCCTCATGCCATAATTACAAAAATACCCT
125 ATAAAAAATTGAAATGTAACCAAAAGGACTATTATGCCATCATACCATAATCACAAAAATA-CCA
*
9232754 TTCTTCTATAAATATTTACTAAATAATCCCTTAAAAATTTACCAAAAT
189 TTCTTCTATAAATATTTACTAAATAATCACTTAAAAATTTACCAAAAT
9232802 GCCCTTTCTA
Statistics
Matches: 199, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
255 6 0.03
256 94 0.47
257 89 0.45
258 10 0.05
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (258 bp):
AATTGACATGTGGCCAAATAGACAATTTCACCTTCATACCATAATTAAGAAAATACCCATTCTCT
AATAATTATATACTAAATAATCCCTAGTGAAAATTCCAAAATACCATTTCCATTATACGATAAAA
AATTGAAATGTAACCAAAAGGACTATTATGCCATCATACCATAATCACAAAAATACCATTCTTCT
ATAAATATTTACTAAATAATCACTTAAAAATTTACCAAAATACCCATACCATTTTATGATATG
Found at i:9233093 original size:389 final size:385
Alignment explanation
Indices: 9232275--9233231 Score: 949
Period size: 389 Copynumber: 2.5 Consensus size: 385
9232265 ATTGCCTAGA
* * * ** * *
9232275 AAATTACCAAAATTCCCTTTCACATTATAC---AAAAAATTGACATGTGGCCAAATTGACAATT-
1 AAATTACCAAAATGCCCATTCA-ATTATACAATAAAAAACTGACATGTAACCAAATGGACTATTA
** * * *
9232336 T-CACCTTCATATTATAATTACGAAAATACCCATT-TTCTTATAATTATATACTAAATAATCCCT
65 TGC-CC-TCATACCATAATTACAAAAATACCCTTTCTTC-TATAATTATTTACTAAATAATCCCT
* * *
9232399 AGTGAAAATTT-CAAAATACCATTTCCATTATATGATAAGAAATTGAAATGTGGCCAAAAGGACT
127 --TAAAAATTTACAAAATGCCATTTCCATTATATGATAAGAAATTGAAATGTAGCCAAAAGGACT
*
9232463 ATTATGCCATCATATCATAATCATGAAAATACCATTCTTTTATAATTATTTACTAAATAATCACT
190 ATTATGCCATCATATCATAATCATGAAAATACCATTCTTTTATAATCATTTACTAAATAATCACT
* ** * *
9232528 TAGAAATTATCAAAATACCCATACCATTTTATGATATGAATTGACATGTGGCCAAATAGACTATT
255 TAGAAATTAACAAAATACCCATACCATTACATGATAAGAATTGACATGTCGCCAAATAGACTATT
*
9232593 ATACTCTCATACCATAATTAAGAAAATACCCTTCTCTAATAATTATTCACTAACTAATCCTCTAT
320 ATACTCTCATACCATAATTAAGAAAATACCCTTCTCTAATAATTATTCACTAACTAATCCTCTAA
9232658 G
385 G
* * * *
9232659 AAATTACCAAAATGCCCATTCCATTATACGATAAAAAATTGACATGTAACTAAATGGACTATTAT
1 AAATTACCAAAATGCCCATTCAATTATACAATAAAAAACTGACATGTAACCAAATGGACTATTAT
* *
9232724 GCCCTCATGCCATAATTACAAAAATACCCTTTCTTCTATAAATATTTACTAAATAATCCCTTAAA
66 GCCCTCATACCATAATTACAAAAATACCCTTTCTTCTATAATTATTTACTAAATAATCCCTTAAA
* * * ** * * * **
9232789 AATTTACCAAAATGCCCTTTCTATTATATGTTTGGATATTGACATGTAGTCAAATTGA-TAATTA
131 AATTTA-CAAAATGCCATTTCCATTATATGATAAGAAATTGAAATGTAGCCAAAAGGACT-ATTA
* * * * *
9232853 TGCCCTCATATCATAATTATGCAAATACC-TCTCCTCTTT-TAATCATTTACTATATAATCCCTT
194 TGCCATCATATCATAATCATGAAAATACCAT-T-CT-TTTATAATCATTTACTAAATAATCACTT
* * * * * * * *
9232916 ATGAAATTAAGAAAATA-TCATTTCCATTACATTATAAGAAATTGACATGTCGTCAAATGGATTG
256 A-GAAATTAACAAAATACCCA-TACCATTACATGATAAG-AATTGACATGTCGCCAAATAGACTA
* * * * *
9232980 TTAT-GTCTTCATACCATACTTATGAAAATAGCCTTCTCTTATAATTATAT-ACT-ACATAATCA
318 TTATACTC-TCATACCATAATTAAGAAAATACCCTTCTCTAATAATTAT-TCACTAAC-TAATC-
9233042 CTC-AAG
379 CTCTAAG
* ** * * *
9233048 AAATTACTAAAATGCCTTTTCAATTATACAATAAGAAACTGACATGTGACCAAATTGACTATTAT
1 AAATTACCAAAATGCCCATTCAATTATACAATAAAAAACTGACATGTAACCAAATGGACTATTAT
* * * * * * * *
9233113 GCCTTTATATCATAATTACAAAAATA-CCTCTTCTTTTATAATTGTTTACAAAATAATTCCTTGT
66 GCCCTCATACCATAATTACAAAAATACCCT-TTCTTCTATAATTATTTACTAAATAATCCCTT-A
* * *
9233177 TAAA-TTATCAAAATGCCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAA
129 AAAATTTA-CAAAATGCCATTTCCATTATATGATAAGAAATTGAAATGTAGCCAAA
9233232 TAAACTACTA
Statistics
Matches: 469, Mismatches: 83, Indels: 37
0.80 0.14 0.06
Matches are distributed among these distances:
383 7 0.01
384 27 0.06
385 2 0.00
386 142 0.30
387 32 0.07
388 36 0.08
389 216 0.46
390 7 0.01
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (385 bp):
AAATTACCAAAATGCCCATTCAATTATACAATAAAAAACTGACATGTAACCAAATGGACTATTAT
GCCCTCATACCATAATTACAAAAATACCCTTTCTTCTATAATTATTTACTAAATAATCCCTTAAA
AATTTACAAAATGCCATTTCCATTATATGATAAGAAATTGAAATGTAGCCAAAAGGACTATTATG
CCATCATATCATAATCATGAAAATACCATTCTTTTATAATCATTTACTAAATAATCACTTAGAAA
TTAACAAAATACCCATACCATTACATGATAAGAATTGACATGTCGCCAAATAGACTATTATACTC
TCATACCATAATTAAGAAAATACCCTTCTCTAATAATTATTCACTAACTAATCCTCTAAG
Found at i:9233832 original size:130 final size:128
Alignment explanation
Indices: 9233256--9235111 Score: 1212
Period size: 130 Copynumber: 14.4 Consensus size: 128
9233246 CTCATACATT
* * * * * *
9233256 TTCCATTATGTGATAAGAAATTAACATTTGG-TAAATTTTG-CTATTATTCCCTCATACCATAAT
1 TTCCATTATATGATAAGAAATTGACATGTGGCCAAA--TTGACTATTATGCCATCATACCATAAT
* *
9233319 TATGAAAATA--CTTTTCTTTTATAATTATTTACAAAATAAT--CTTATGAAATTACCAAAATGC
64 TATGAAAATACCCTTTTC--TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATAC
9233380 CC
127 CC
* * * * ** * * * * * *
9233382 TTTCCATTGTCTGATAAGAAAGTGATATGT-AACAAGTAGACTATTATGCCAT-TTTCTTATAGT
1 -TTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCATCATAC-CATAAT
* *
9233445 TATGACAATACCC-CTT-TTATAATTATTTACTAAATAATCCCTTA-GTAAATTACCAAAAGGT-
64 TATGAAAATACCCTTTTCTTATAATTATTTACTAAATAATCCCTTATG-AAATTACCAAAA--TA
**
9233506 CAT
126 CCC
** * * *
9233509 TTCCATTATATGATAAGAAATTGACATGTGGTAAAATTGACAATTATGCCCA-AATATCATAATT
1 TTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATG-CCATCATACCATAATT
* * * **
9233573 ACGAAAATACCCTATTCTCTTATTATTATTTACTAAATAATCTCTTAAAAAATTACCAAAATACC
65 ATGAAAATACCCT-TT-TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACC
*
9233638 ATT
128 --C
* * * * * * * *
9233641 TTTCATTATATGATAAGAAGTTAACATGTAGCCAAATTGACTACTATGCCATCAAATCATAATTG
1 TTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCATCATACCATAATTA
* * ** *
9233706 TGAAAATATCCCTTTTATTATAATTATTTACTAAATAATCCTTTACAAAATTACCAAAACACCC
66 TGAAAATA-CCCTTTTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCC
* * * * * *
9233770 TTCCTAATATATTATAAGAAATTGATATATGGCTAAATGGACTATTATGCCATCATACCATAATT
1 TTCC-ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCATCATACCATAATT
* * * * * *
9233835 ATGAAAATGCCCATTCTCTTATGATTATTTACTAAATAAT--TTTGATAAAATTACTAAAATACC
65 ATGAAAATACCC-TTTTCTTATAATTATTTACTAAATAATCCCTT-ATGAAATTACCAAAATACC
9233898 C
128 C
* * * * * * *
9233899 TTTTCTTTATATGATAAGAAGTTAACATGTAGTCAAATTGACTATTATGCCATCGA-ATCATAAT
1 -TTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCATC-ATACCATAAT
* * * *
9233963 TATGAAAATACCC-CTCCATTATAATTATTTACTAAA-AAACCCTTATGAAATTACAAAAATACC
64 TATGAAAATACCCTTTTC-TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACC
*
9234026 TT
128 -C
** * * * * * *
9234028 TTCCAAAATACGATAAGAAATCGACATGTAGTCAAATTGACTATTATGCCCTTCATACTATAATT
1 TTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATG-CCATCATACCATAATT
* *** * * **
9234093 ACGAAAATATGATTTGTCTTATAACTATTTACTAAATAATCCCTTATGAAATTACCAAAGTACAT
65 ATGAAAATACCCTTT-TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCC
* * * * * * * *
9234158 TTCCCGTTATACGATAAGAAATTAACATGTGACCAAATTGATTATTATGCCCTTGA-ATCATAAT
1 TT-CCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATG-CCATCATACCATAAT
* * *
9234222 TATGAAAATACCCTTTCTATTATAATTATTTATTAAATAATTCCC-TATGAAATAACCAAAATAC
64 TATGAAAATACCCTTT-TCTTATAATTATTTACTAAATAA-TCCCTTATGAAATTACCAAAATAC
*
9234286 TTC
127 -CC
* * * * * *
9234289 TTCCAATATATGATAAGAAATTGACTTGTGGCCAAATGGACTATTATGCCCTCGTACCATAATCA
1 TTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCATCATACCATAATTA
* * * * *
9234354 -CAAAATTATCATTCTT-TTATAACTATTTACTAAATAATCCCTTACGAAATTACCAAAATACCC
66 TGAAAA-TACCCTT-TTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATA-CC
9234417 C
128 C
* * * * * * ** *
9234418 TACCATTTTATGATAAG-AGTTTACATGTGGCCAAATGGACTATTATTCTTTTATACCATAATTA
1 TTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCATCATACCATAATTA
* * * * *
9234482 TAAAAATACTCTTCTCTTATAATTATTTACT--A-AGTCCC-TATGAAATTACCAAAATGCCC
66 TGAAAATACCCTTTTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCC
* * ** * *
9234541 ATTTCATTATATGACAAGAAATTGACATGTAAACC-AA-TGCACTATTATGCCTTCCTACCATAA
1 -TTCCATTATATGATAAGAAATTGACATGT-GGCCAAATTG-ACTATTATGCCATCATACCATAA
* * * * * ** *
9234604 TTGTGAAAATA-CCTATTCTTTTCCAAATATTTACTAAATAAT-ACTTACAAAATTACCAAAATG
63 TTATGAAAATACCCTTTTCTTAT--AATTATTTACTAAATAATCCCTTATGAAATTACCAAAATA
9234667 CCC
126 CCC
** * * * * * * * * *
9234670 TTTTTATTATATTATTAA-AAATTGACATGTAGTCAAATTGACAATGACGCCCTAATATCATAAT
1 -TTCCATTATATGA-TAAGAAATTGACATGTGGCCAAATTGACTATTATGCCATCATACCATAAT
*** * * **
9234734 TGCAAAAATACCTTTTTTGCTTATAATCATTTACTAAATAATCCCTTATGAAATTAAGAAAATAC
64 TATGAAAATACC-CTTTT-CTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATAC
9234799 CC
127 CC
* * * * * * * *
9234801 TTTTCCATTACATTATAAGAAATTAACATGTGGTCAAATAGACTATTATACC-TCATACTATTAG
1 --TTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCATCATACCA-TAA
** * * * * * * * * *
9234865 TTACAAAAATAGCCTTTTCCTATAATTATTTACCACATAATCACTCAAGAAATTACTAAAATGCC
63 TTATGAAAATACCCTTTTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACC
9234930 C
128 C
* ** * * * * * * *
9234931 TTTCAATTATACAATAAGAAACTAAAATGTGACCAACA-TGACTATTATGCCCTTATATCATAAT
1 -TTCCATTATATGATAAGAAATTGACATGTGGCCAA-ATTGACTATTATGCCATCATACCATAAT
* ** * ** * *
9234995 TATGAAAATATCCATTTT-TTATAACAATTTATTAAATAAT-TTTCTAT-ATAATTACCGAAATG
64 TATGAAAATA-CCCTTTTCTTATAATTATTTACTAAATAATCCCT-TATGA-AATTACCAAAATA
9235057 CCC
126 CCC
* * * *
9235060 TTTTCCATTATATGATATGAAATTGACATCTGGCGAAATGGACTATTATGCC
1 --TTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCC
9235112 CCCATACCTT
Statistics
Matches: 1343, Mismatches: 312, Indels: 145
0.75 0.17 0.08
Matches are distributed among these distances:
123 3 0.00
124 58 0.04
125 49 0.04
126 77 0.06
127 59 0.04
128 150 0.11
129 317 0.24
130 322 0.24
131 190 0.14
132 114 0.08
133 4 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (128 bp):
TTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCATCATACCATAATTA
TGAAAATACCCTTTTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCC
Found at i:9233952 original size:129 final size:129
Alignment explanation
Indices: 9233254--9235111 Score: 1190
Period size: 129 Copynumber: 14.4 Consensus size: 129
9233244 CACTCATACA
* * * * * *
9233254 TTTTCCATTATGTGATAAGAAATTAACATTTGGT-AAATTTTG-CTATTATTCCCTCATACCATA
1 TTTT-CATTATATGATAAGAAATTGACATGTAGTCAAA--TTGACTATTATGCCATCATACCATA
** * * *
9233317 ATTATGAAAATA-CTTTTCTTTTATAATTATTTACAAAATAAT-CTTATGAAATTACCAAAATGC
63 ATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCTTATGAAATTACCAAAATAC
9233380 CC
128 CC
* * * * * * * * * * * *
9233382 TTTCCATTGTCTGATAAGAAAGTGATATGTA-ACAAGTAGACTATTATGCCAT-TTTCTTATAGT
1 TTTTCATTATATGATAAGAAATTGACATGTAGTCAAATTGACTATTATGCCATCATAC-CATAAT
* * ***
9233445 TATGACAATACCC---CTTTTATAATTATTTACTAAATAATCCCTTA-GTAAATTACCAAAAGGT
65 TATGAAAATACCCATTCTCTTATAATTATTTACTAAATAAT-CCTTATG-AAATTACCAAAATAC
*
9233506 CA
128 CC
* * * * * *
9233508 TTTCCATTATATGATAAGAAATTGACATGTGGTAAAATTGACAATTATGCCCA-AATATCATAAT
1 TTTTCATTATATGATAAGAAATTGACATGTAGTCAAATTGACTATTATG-CCATCATACCATAAT
* * **
9233572 TACGAAAATACCCTATTCTCTTATTATTATTTACTAAATAATCTCTTAAAAAATTACCAAAATAC
65 TATGAAAATACCC-ATTCTCTTATAATTATTTACTAAATAATC-CTTATGAAATTACCAAAATAC
*
9233637 CAT
128 C-C
* * * * * *
9233640 TTTTCATTATATGATAAGAAGTTAACATGTAGCCAAATTGACTACTATGCCATCAAATCATAATT
1 TTTTCATTATATGATAAGAAATTGACATGTAGTCAAATTGACTATTATGCCATCATACCATAATT
* * * ** *
9233705 GTGAAAATATCCC-TTTTATTATAATTATTTACTAAATAATCCTTTACAAAATTACCAAAACACC
66 ATGAAAATA-CCCATTCTCTTATAATTATTTACTAAATAATCC-TTATGAAATTACCAAAATACC
9233769 C
129 C
* * * * * * *
9233770 -TTCCTAATATATTATAAGAAATTGATATAT-GGCTAAATGGACTATTATGCCATCATACCATAA
1 TTTTC-ATTATATGATAAGAAATTGACATGTAGTC-AAATTGACTATTATGCCATCATACCATAA
* * * * *
9233833 TTATGAAAATGCCCATTCTCTTATGATTATTTACTAAATAAT-TTTGATAAAATTACTAAAATAC
64 TTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCTT-ATGAAATTACCAAAATAC
9233897 CC
128 CC
* * * *
9233899 TTTTCTTTATATGATAAGAAGTTAACATGTAGTCAAATTGACTATTATGCCATCGA-ATCATAAT
1 TTTTCATTATATGATAAGAAATTGACATGTAGTCAAATTGACTATTATGCCATC-ATACCATAAT
* * * *
9233963 TATGAAAATACCC-CTC-CATTATAATTATTTACTAAAAAACCCTTATGAAATTACAAAAATA-C
65 TATGAAAATACCCATTCTC-TTATAATTATTTACTAAATAATCCTTATGAAATTACCAAAATACC
9234025 C
129 C
** * * * *
9234026 TTTTCCAAAATACGATAAGAAATCGACATGTAGTCAAATTGACTATTATGCCCTTCATACTATAA
1 TTTT-CATTATATGATAAGAAATTGACATGTAGTCAAATTGACTATTATG-CCATCATACCATAA
* ** * * *
9234091 TTACGAAAATA-TGATTTGTCTTATAACTATTTACTAAATAATCCCTTATGAAATTACCAAAGTA
64 TTATGAAAATACCCA-TTCTCTTATAATTATTTACTAAATAAT-CCTTATGAAATTACCAAAATA
*
9234155 -CA
127 CCC
* * * * * * * * *
9234157 TTTCCCGTTATACGATAAGAAATTAACATGT-GACCAAATTGATTATTATGCCCTTGA-ATCATA
1 TTT-TCATTATATGATAAGAAATTGACATGTAG-TCAAATTGACTATTATG-CCATCATACCATA
* * * * *
9234220 ATTATGAAAATACCCTTTCTATTATAATTATTTATTAAATAATTCCCTATGAAATAACCAAAATA
63 ATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAA-TCCTTATGAAATTACCAAAATA
9234285 --C
127 CCC
* * * * * * *
9234286 TTCTTCCAATATATGATAAGAAATTGACTTGTGGCCAAATGGACTATTATGCCCTCGTACCATAA
1 TT-TT-CATTATATGATAAGAAATTGACATGTAGTCAAATTGACTATTATGCCATCATACCATAA
* * * * * *
9234351 TCA-CAAAATTA-TCATTCTTTTATAACTATTTACTAAATAATCCCTTACGAAATTACCAAAATA
64 TTATGAAAA-TACCCATTCTCTTATAATTATTTACTAAATAAT-CCTTATGAAATTACCAAAATA
9234414 CCC
127 CCC
* ** * * * * * * * ** *
9234417 CTACCATTTTATGATAAG-AGTTTACATGTGGCCAAATGGACTATTATTCTTTTATACCATAATT
1 TTTTCATTATATGATAAGAAATTGACATGTAGTCAAATTGACTATTATGCCATCATACCATAATT
* * * * *
9234481 ATAAAAATACTC-TTCTCTTATAATTATTTACT--A-AGTCCCTATGAAATTACCAAAATGCCC
66 ATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCTTATGAAATTACCAAAATACCC
* * ** * * *
9234541 ATTTCATTATATGACAAGAAATTGACATGTAAACCAA-TGCACTATTATGCCTTCCTACCATAAT
1 TTTTCATTATATGATAAGAAATTGACATGTAGTCAAATTG-ACTATTATGCCATCATACCATAAT
* * * ** * * ** *
9234605 TGTGAAAATACCTATTCTTTTCCAAATATTTACTAAATAATACTTACAAAATTACCAAAATGCCC
65 TATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCTTATGAAATTACCAAAATACCC
* * * * * * * *
9234670 TTTTTATTATATTATTAA-AAATTGACATGTAGTCAAATTGACAATGACGCCCTAATATCATAAT
1 TTTTCATTATATGA-TAAGAAATTGACATGTAGTCAAATTGACTATTATGCCATCATACCATAAT
*** ** * * **
9234734 TGCAAAAATACCTTTTTTGCTTATAATCATTTACTAAATAATCCCTTATGAAATTAAGAAAATAC
65 TATGAAAATACCCATTCT-CTTATAATTATTTACTAAATAAT-CCTTATGAAATTACCAAAATAC
9234799 CC
128 CC
* * * * * * * *
9234801 TTTTCCATTACATTATAAGAAATTAACATGTGGTCAAATAGACTATTATACC-TCATACTATTAG
1 TTTT-CATTATATGATAAGAAATTGACATGTAGTCAAATTGACTATTATGCCATCATACCA-TAA
** * * * * * * * * *
9234865 TTACAAAAATAGCC-TTTTCCTATAATTATTTACCACATAATCACTCAAGAAATTACTAAAATGC
64 TTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATC-CTTATGAAATTACCAAAATAC
9234929 CC
128 CC
** * * * * * * *
9234931 -TTTCAATTATACAATAAGAAACTAAAATGT-GACCAACA-TGACTATTATGCCCTTATATCATA
1 TTTTC-ATTATATGATAAGAAATTGACATGTAG-TCAA-ATTGACTATTATGCCATCATACCATA
* * ** * ** *
9234993 ATTATGAAAATATCCATT-TTTTATAACAATTTATTAAATAATTTTCTAT-ATAATTACCGAAAT
63 ATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCT-TATGA-AATTACCAAAAT
*
9235056 GCCC
126 ACCC
* * * *
9235060 TTTTCCATTATATGATATGAAATTGACATCT-GGCGAAATGGACTATTATGCC
1 TTTT-CATTATATGATAAGAAATTGACATGTAGTC-AAATTGACTATTATGCC
9235112 CCCATACCTT
Statistics
Matches: 1343, Mismatches: 312, Indels: 148
0.74 0.17 0.08
Matches are distributed among these distances:
124 59 0.04
125 48 0.04
126 84 0.06
127 57 0.04
128 148 0.11
129 336 0.25
130 311 0.23
131 192 0.14
132 105 0.08
133 3 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (129 bp):
TTTTCATTATATGATAAGAAATTGACATGTAGTCAAATTGACTATTATGCCATCATACCATAATT
ATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCTTATGAAATTACCAAAATACCC
Found at i:9233962 original size:259 final size:256
Alignment explanation
Indices: 9233256--9235111 Score: 1316
Period size: 259 Copynumber: 7.2 Consensus size: 256
9233246 CTCATACATT
* * * * * * * *
9233256 TTCCATTATGTGATAAGAAATTAACATTTGGTAAATTTTG-CTATTATTCCCTCATACCATAATT
1 TTCCAATATATGATAAGAAATTGACATGTGGTAAA-ATGGACTATTATGCCATCATACCATAATT
* ** * * * *
9233320 ATGAAAATACTTTTCTTTTATAATTATTTACAAAATAAT-CTTATGAAATTACCAAAATGCCCTT
65 ACGAAAATACCATTCTCTTATAATTATTTACTAAATAATCCTTATAAAATTACCAAAATACCCTT
* * * * * * * **** * *
9233384 TCCATTGTCTGATAAGAAAG-TGATATGTA-ACAAGTAGACTATTATGCCATTTTCTTATAGTTA
130 TCCATTATATGATAAG-AAGTTAACATGTAGCCAAATTGACTATTATGCCATCGAATCATAATTA
* * *
9233447 TGACAATACCC-CTT-TTATAATTATTTACTAAATAATCCCTTA-GTAAATTACCAAAAGGT-CA
194 TGAAAATACCCTTTTATTATAATTATTTACTAAATAATCCCTTATG-AAATTACCAAAA--TACC
*
9233508 T
256 C
* * * * *
9233509 TTCCATTATATGATAAGAAATTGACATGTGGTAAAATTGACAATTATGCCCA-AATATCATAATT
1 TTCCAATATATGATAAGAAATTGACATGTGGTAAAATGGACTATTATG-CCATCATACCATAATT
* *
9233573 ACGAAAATACCCTATTCTCTTATTATTATTTACTAAATAATCTCTTAAAAAATTACCAAAATACC
65 ACGAAAATA-CC-ATTCTCTTATAATTATTTACTAAATAATC-CTTATAAAATTACCAAAATACC
* * * *
9233638 ATTTTTCATTATATGATAAGAAGTTAACATGTAGCCAAATTGACTACTATGCCATCAAATCATAA
127 -CTTTCCATTATATGATAAGAAGTTAACATGTAGCCAAATTGACTATTATGCCATCGAATCATAA
* * ** *
9233703 TTGTGAAAATATCCCTTTTATTATAATTATTTACTAAATAATCCTTTACAAAATTACCAAAACAC
191 TTATGAAAATA-CCCTTTTATTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATAC
9233768 CC
255 CC
* * *
9233770 TTCCTAATATATTATAAGAAATTGATATATGGCT-AAATGGACTATTATGCCATCATACCATAAT
1 TTCC-AATATATGATAAGAAATTGACATGTGG-TAAAATGGACTATTATGCCATCATACCATAAT
* * * * *
9233834 TATGAAAATGCCCATTCTCTTATGATTATTTACTAAATAAT-TTTGATAAAATTACTAAAATACC
64 TACGAAAAT-ACCATTCTCTTATAATTATTTACTAAATAATCCTT-ATAAAATTACCAAAATACC
* * *
9233898 CTTTTCTTTATATGATAAGAAGTTAACATGTAGTCAAATTGACTATTATGCCATCGAATCATAAT
127 CTTTCCATTATATGATAAGAAGTTAACATGTAGCCAAATTGACTATTATGCCATCGAATCATAAT
* ** * *
9233963 TATGAAAATACCCCTCCATTATAATTATTTACTAAA-AAACCCTTATGAAATTACAAAAATACCT
192 TATGAAAATACCCTTTTATTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACC-
*
9234027 T
256 C
* * * * * * * *
9234028 TTCCAAAATACGATAAGAAATCGACATGTAGTCAAATTGACTATTATGCCCTTCATACTATAATT
1 TTCCAATATATGATAAGAAATTGACATGTGGTAAAATGGACTATTATG-CCATCATACCATAATT
** * * * * *
9234093 ACGAAAATATGATTTGTCTTATAACTATTTACTAAATAATCCCTTATGAAATTACCAAAGTA-CA
65 ACGAAAATACCA-TTCTCTTATAATTATTTACTAAATAAT-CCTTATAAAATTACCAAAATACCC
* * * * * *
9234157 TTTCCCGTTATACGATAAGAAATTAACATGT-GACCAAATTGATTATTATGCCCTTGAATCATAA
128 TTT-CCATTATATGATAAGAAGTTAACATGTAG-CCAAATTGACTATTATGCCATCGAATCATAA
* *
9234221 TTATGAAAATACCCTTTCTATTATAATTATTTATTAAATAATTCCC-TATGAAATAACCAAAATA
191 TTATGAAAATACCCTTT-TATTATAATTATTTACTAAATAA-TCCCTTATGAAATTACCAAAATA
*
9234285 CTTC
254 C-CC
* ** * * *
9234289 TTCCAATATATGATAAGAAATTGACTTGTGGCCAAATGGACTATTATGCCCTCGTACCATAATCA
1 TTCCAATATATGATAAGAAATTGACATGTGGTAAAATGGACTATTATGCCATCATACCATAATTA
* * * ** *
9234354 C-AAAATTATCATTCTTTTATAACTATTTACTAAATAATCCCTTACGAAATTACCAAAATACCCC
66 CGAAAA-TACCATTCTCTTATAATTATTTACTAAATAAT-CCTTATAAAATTACCAAAATACCCT
* * * * * * * ** *
9234418 TACCATTTTATGATAAG-AGTTTACATGTGGCCAAATGGACTATTAT-TCTTTTATACCATAATT
129 TTCCATTATATGATAAGAAGTTAACATGTAGCCAAATTGACTATTATGCCATCGA-ATCATAATT
* * * * * *
9234481 ATAAAAATACTCTTCTCTTATAATTATTTACT--A-AGTCCC-TATGAAATTACCAAAATGCCC
193 ATGAAAATACCCTTTTATTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCC
* * * * * * *
9234541 ATTTCATTATATGACAAGAAATTGACATGT--AAACCAATGCACTATTATGCCTTCCTACCATAA
1 -TTCCAATATATGATAAGAAATTGACATGTGGTAA--AATGGACTATTATGCCATCATACCATAA
** * ** * * * *
9234604 TTGTGAAAATACCTATTCTTTTCCAAATATTTACTAAATAATACTTACAAAATTACCAAAATGCC
63 TTACGAAAATACC-ATTCTCTTATAATTATTTACTAAATAATCCTTATAAAATTACCAAAATACC
** * * * * * * * * *
9234669 CTTTTTATTATATTATTAA-AAATTGACATGTAGTCAAATTGACAATGACGCCCT-AATATCATA
127 CTTTCCATTATATGA-TAAGAAGTTAACATGTAGCCAAATTGACTATTATGCCATCGA-ATCATA
*** * * * **
9234732 ATTGCAAAAATACCTTTTTTGCTTATAATCATTTACTAAATAATCCCTTATGAAATTAAGAAAAT
190 ATTATGAAAATACC-CTTTT-ATTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAAT
9234797 ACCC
253 ACCC
* * * * * * * * *
9234801 TTTTCCATTACATTATAAGAAATTAACATGTGGTCAAATAGACTATTATACC-TCATACTATTAG
1 --TTCCAATATATGATAAGAAATTGACATGTGGTAAAATGGACTATTATGCCATCATACCA-TAA
* * * * * * * *
9234865 TTACAAAAATAGCC-TTTTCCTATAATTATTTACCACATAATCACTCA-AGAAATTACTAAAATG
63 TTACGAAAATA-CCATTCTCTTATAATTATTTACTAAATAATC-CTTATA-AAATTACCAAAATA
* ** ** * * *
9234928 CCCTTTCAATTATACAATAAGAAACTAAAATGT-GACCAACA-TGACTATTATGCCCT-TATATC
125 CCCTTTCCATTATATGATAAGAAGTTAACATGTAG-CCAA-ATTGACTATTATGCCATCGA-ATC
* ** * ** *
9234990 ATAATTATGAAAATATCCATTTT-TTATAACAATTTATTAAATAAT-TTTCTAT-ATAATTACCG
187 ATAATTATGAAAATA-CCCTTTTATTATAATTATTTACTAAATAATCCCT-TATGA-AATTACCA
*
9235052 AAATGCCC
249 AAATACCC
* * * **
9235060 TTTTCCATTATATGATATGAAATTGACATCTGGCGAAATGGACTATTATGCC
1 --TTCCAATATATGATAAGAAATTGACATGTGGTAAAATGGACTATTATGCC
9235112 CCCATACCTT
Statistics
Matches: 1282, Mismatches: 259, Indels: 118
0.77 0.16 0.07
Matches are distributed among these distances:
251 1 0.00
252 4 0.00
253 160 0.12
254 75 0.06
255 30 0.02
256 16 0.01
257 97 0.08
258 145 0.11
259 324 0.25
260 108 0.08
261 218 0.17
262 102 0.08
263 2 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (256 bp):
TTCCAATATATGATAAGAAATTGACATGTGGTAAAATGGACTATTATGCCATCATACCATAATTA
CGAAAATACCATTCTCTTATAATTATTTACTAAATAATCCTTATAAAATTACCAAAATACCCTTT
CCATTATATGATAAGAAGTTAACATGTAGCCAAATTGACTATTATGCCATCGAATCATAATTATG
AAAATACCCTTTTATTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCC
Found at i:9234177 original size:388 final size:390
Alignment explanation
Indices: 9233514--9235088 Score: 850
Period size: 388 Copynumber: 4.1 Consensus size: 390
9233504 GTCATTTCCA
* *
9233514 TTATATGATAAGAAATTGACATGTGGTAAAATTGACAATTATGCCCAAATATCATAATTACGAAA
1 TTATATGATAAGAAATTAACATGTAGTAAAATTGACAATTATGCCCAAATATCATAATTACGAAA
* * * * * *
9233579 ATACCCTATTCTCTTATTATTATTTACTAAATAATCTCTTAAAAAATTACCAAAATACCATTTTT
66 ATACCC-ACTCTCTTATAATTATTTACTAAATAAACCCTTAAAAAATTACAAAAATACCATTTTC
** * * * **
9233644 CATTATATGATAAGAAGTTAACATGTAGCCAAATTGACTACTATGCCATCAAATCATAATTGTGA
130 CAAAATACGATAAGAAATCAACATGTAGCCAAATTGACTACTATGCCATCAAATCATAATTACGA
* * * *
9233709 AAATATCCCTTTTATTATAATTATTTACTAAATAATCCTTTACAAAATTACCAAAACACCCTTCC
195 AAATATCCATTTTATTATAACTATTTACTAAATAATCCCTTACAAAATTACCAAAACACACTTCC
* ** * * * *
9233774 TAATATATTATAAGAAATTGATATATGGCTAAATGGACTATTATG-CCATCATACCATAATTATG
260 CAATATACGATAAGAAATTAACATATGACCAAATGGACTATTATGCCCATCA-ACCATAATTATG
* * *
9233838 AAAATGCCCATTCTCTTATGATTATTTACTAAATAATTTTGATAAAATTACTAAAATACCCTTTT
324 AAAATACCCATTCTATTATAATTATTTACTAAATAATTTTGATAAAATTACTAAAATACCCTTTT
9233903 CT
389 CT
* * * * *
9233905 TTATATGATAAGAAGTTAACATGTAGTCAAATTGACTATTATG-CCATCGA-ATCATAATTATGA
1 TTATATGATAAGAAATTAACATGTAGTAAAATTGACAATTATGCCCA--AATATCATAATTACGA
**
9233968 AAATACCC-CTC-CATTATAATTATTTACTAAA-AAACCCTTATGAAATTACAAAAATACC-TTT
64 AAATACCCACTCTC-TTATAATTATTTACTAAATAAACCCTTAAAAAATTACAAAAATACCATTT
* * * * *
9234029 TCCAAAATACGATAAGAAATCGACATGTAGTCAAATTGACTATTATGCCCTTCATA-CTATAATT
128 TCCAAAATACGATAAGAAATCAACATGTAGCCAAATTGACTACTATG-CCATCAAATC-ATAATT
* * ** **
9234093 ACGAAAATAT-GATTTGTCTTATAACTATTTACTAAATAATCCCTTATGAAATTACCAAAGTACA
191 ACGAAAATATCCATTT-TATTATAACTATTTACTAAATAATCCCTTACAAAATTACCAAAACACA
* ** * * * * * *
9234157 TTTCCCGTTATACGATAAGAAATTAACATGTGACCAAATTGATTATTATGCCCTTGAATCATAAT
255 CTTCCCAATATACGATAAGAAATTAACATATGACCAAATGGACTATTATGCCCATCAACCATAAT
* * * * * *
9234222 TATGAAAATACCCTTTCTATTATAATTATTTATTAAATAATTCCCT-ATGAAATAACCAAAATA-
320 TATGAAAATACCCATTCTATTATAATTATTTACTAAATAATT--TTGATAAAATTACTAAAATAC
*
9234285 -CTTCTTCCA
383 CCTT-TT-CT
* * * * ** * * *** * *
9234294 ATATATGATAAGAAATTGACTTGTGGCCAAATGGACTATTATGCCCTCGTACCATAATCAC-AAA
1 TTATATGATAAGAAATTAACATGTAGTAAAATTGACAATTATGCCCAAATATCATAATTACGAAA
* * * * * ** * ** *
9234358 ATTA-TCATTCTTTTATAACTATTTACTAAATAATCCCTTACGAAATTACCAAAATACC-CCTAC
66 A-TACCCACTCTCTTATAATTATTTACTAAATAAACCCTTAAAAAATTACAAAAATACCATTTTC
*** * * ** * * * * ** * * * **
9234421 CATTTTATGATAAG-AGTTTACATGTGGCCAAATGGACTATTATTCTTTTATACCATAATTATAA
130 CAAAATACGATAAGAAATCAACATGTAGCCAAATTGACTACTATGCCATCAAATCATAATTACGA
* * * * ** *
9234485 AAATA-CTC-TTCTCTTATAATTATTTACT--A-AGTCCC-TATGAAATTACCAAAATGCCCA-T
195 AAATATC-CATTTTATTATAACTATTTACTAAATAATCCCTTACAAAATTACCAAAA--CACACT
* * * * * * * * * *
9234543 T-TCATTATATGACAAGAAATTGACATGTAAACC-AATGCACTATTATG-CCTTCCTACCATAAT
257 TCCCAATATACGATAAGAAATTAACATAT-GACCAAATGGACTATTATGCCCAT-CAACCATAAT
* * * ** * * * * *
9234605 TGTGAAAATACCTATTCTTTTCCAAATATTTACTAAATAATACTT-ACAAAATTACCAAAATGCC
320 TATGAAAATACCCATTCTATTATAATTATTTACTAAATAAT-TTTGATAAAATTACTAAAATACC
9234669 CTTTT-T
384 CTTTTCT
* * * * * * * *
9234675 ATTATATTATTAA-AAATTGACATGTAGTCAAATTGACAATGACGCCCTAATATCATAATTGCAA
1 -TTATATGA-TAAGAAATTAACATGTAGTAAAATTGACAATTATGCCCAAATATCATAATTACGA
*** * * * ** *
9234739 AAATACCTTTTTTGCTTATAATCATTTACTAAATAATCCCTTATGAAATTA-AGAAAATACCCTT
64 AAATACCCACTCT-CTTATAATTATTTACTAAATAAACCCTTAAAAAATTACA-AAAATACCATT
** * ** * * * * * * * *
9234803 TTCCATTACATTATAAGAAATTAACATGTGGTCAAATAGACTATTATACC-TCATA-CTATTAGT
127 TTCCAAAATACGATAAGAAATCAACATGTAGCCAAATTGACTACTATGCCATCAAATC-A-TAAT
* * ** * * * * * * **
9234866 TACAAAAATAGCC-TTTTCCTATAATTATTTACCACATAATCACTCA-AGAAATTACTAAAATGC
190 TACGAAAATATCCATTTTATTATAACTATTTACTAAATAATCCCTTACA-AAATTACCAAAACAC
* * * * * * * *
9234929 CCTT-TCAATTATACAATAAGAAACTAAAATGTGACCAACAT-GACTATTATGCCC-TTATATCA
254 ACTTCCCAA-TATACGATAAGAAATTAACATATGACCAA-ATGGACTATTATGCCCATCA-ACCA
* * ** * * * **
9234991 TAATTATGAAAATATCCATT-TTTTATAACAATTTATTAAATAATTTTCTATATAATTACCGAAA
316 TAATTATGAAAATACCCATTCTATTATAATTATTTACTAAATAATTTT-GATAAAATTACTAAAA
* *
9235055 TGCCCTTTTCCA
380 TACCCTTTT-CT
* *
9235067 TTATATGATATGAAATTGACAT
1 TTATATGATAAGAAATTAACAT
9235089 CTGGCGAAAT
Statistics
Matches: 919, Mismatches: 211, Indels: 108
0.74 0.17 0.09
Matches are distributed among these distances:
382 63 0.07
383 100 0.11
384 55 0.06
385 21 0.02
386 56 0.06
387 65 0.07
388 196 0.21
389 158 0.17
390 125 0.14
391 79 0.09
392 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (390 bp):
TTATATGATAAGAAATTAACATGTAGTAAAATTGACAATTATGCCCAAATATCATAATTACGAAA
ATACCCACTCTCTTATAATTATTTACTAAATAAACCCTTAAAAAATTACAAAAATACCATTTTCC
AAAATACGATAAGAAATCAACATGTAGCCAAATTGACTACTATGCCATCAAATCATAATTACGAA
AATATCCATTTTATTATAACTATTTACTAAATAATCCCTTACAAAATTACCAAAACACACTTCCC
AATATACGATAAGAAATTAACATATGACCAAATGGACTATTATGCCCATCAACCATAATTATGAA
AATACCCATTCTATTATAATTATTTACTAAATAATTTTGATAAAATTACTAAAATACCCTTTTCT
Found at i:9234245 original size:518 final size:515
Alignment explanation
Indices: 9233296--9237062 Score: 1293
Period size: 518 Copynumber: 7.2 Consensus size: 515
9233286 GTAAATTTTG
* ** *
9233296 CTATTATTCCCTCATACCATAATTATGAAAATACTTTTCTTTTATAATTATTTACAAAATAATCT
1 CTATTATGCCCTCATACCATAATTATGAAAATACCATTCTTTTATAATTATTTACTAAATAATCT
* * * * * * *
9233361 TATGAAATTACCAAAATGCCCTTTCCATTGTCTGATAAGAAAGTGATATGTAACAAGTAGACTAT
66 TATAAAATTACCAAAATACCCTTTCCATTATATGATAAGAAAGTAACATGTAACAAATAGACTAT
**** * * * * *
9233426 TATGCCATTTTCTTATAGTTATGACAATACCCCTTTTATAATTATTTACTAAATAATCCCTTAGT
131 TATGCCATCGAATCATAATTATGAAAATACCCCTATTATAATTATTTACTAAATAAACCCTTAGT
* ** ** * * *
9233491 AAATTACCAAAAGGTCATTTCCATTATATGATAAGAAATTGACATGTGGTAAAATTGACAATTAT
196 AAATTACAAAAAGACCATTTCCAAAATACGATAAGAAATCGACATGTAGTAAAATTGACAATTAT
* * * *
9233556 GCCCAAATATCATAATTACGAAAATACCCTATTCTCTTATTATTATTTACTAAATAATCTCTTAA
261 GCCCAAATATCATAATTACGAAAATACCATATTCTCTTATAACTATTTACTAAATAATCCCTTAA
** * *
9233621 AAAATTACCAAAATACCATTTTTCATTATATGATAAGAAGTTAACATGTAGCCAAATTGACTACT
326 AAAATTACCAAAATACCATTTCCCATTATACGATAAGAAATTAACATGTAGCCAAATTGACTACT
* *
9233686 ATGCCATCAAATCATAATTGTGAAAATATCCCTTTTATTATAATTATTTACTAAATAA-TCCTTT
391 ATGCCATCAAATCATAATTATGAAAATATCCCTTTTATTATAATTATTTACTAAATAATTCC-CT
* * *
9233750 ACAAAATTACCAAAACAC-CCTTCCTAATATATTATAAGAAATTGA-TATATGGCTAAATGGA
455 ACAAAATAACCAAAACACTCCTTCC-AATATATGATAAGAAATTGACT-TATGGCCAAATGGA
* * * * *
9233811 CTATTATGCCATCATACCATAATTATGAAAATGCCCATTCTCTTATGATTATTTACTAAATAATT
1 CTATTATGCCCTCATACCATAATTATGAAAAT-ACCATTCTTTTATAATTATTTACTAAATAATC
* * * * *
9233876 TTGATAAAATTACTAAAATACCCTTTTCTTTATATGATAAG-AAGTTAACATGTAGTCAAATTGA
65 TT-ATAAAATTACCAAAATACCCTTTCCATTATATGATAAGAAAG-TAACATGTA-ACAAATAGA
9233940 CTATTATGCCATCGAATCATAATTATGAAAATACCCCTCCATTATAATTATTTACTAAA-AAACC
127 CTATTATGCCATCGAATCATAATTATGAAAATACCCCT--ATTATAATTATTTACTAAATAAACC
* * *
9234004 CTTA-TGAAATTACAAAAATACCTTTTCCAAAATACGATAAGAAATCGACATGTAGTCAAATTGA
190 CTTAGT-AAATTACAAAAAGACCATTTCCAAAATACGATAAGAAATCGACATGTAGTAAAATTGA
* ** ** *
9234068 CTATTATGCCCTTCATA-CTATAATTACGAAAATATGAT-TTGTCTTATAACTATTTACTAAATA
254 CAATTATGCCC-AAATATC-ATAATTACGAAAATACCATATTCTCTTATAACTATTTACTAAATA
** * *
9234131 ATCCCTTATGAAATTACCAAAGTA-CATTTCCCGTTATACGATAAGAAATTAACATGT-GACCAA
317 ATCCCTTAAAAAATTACCAAAATACCATTTCCCATTATACGATAAGAAATTAACATGTAG-CCAA
* * * ** *
9234194 ATTGATTATTATGCCCTTGAATCATAATTATGAAAATA-CCCTTTCTATTATAATTATTTATTAA
381 ATTGACTACTATGCCATCAAATCATAATTATGAAAATATCCCTTT-TATTATAATTATTTACTAA
** * * *
9234258 ATAATTCCCTATGAAATAACCAAAATACTTCTTCCAATATATGATAAGAAATTGACTTGTGGCCA
445 ATAATTCCCTACAAAATAACCAAAACACTCCTTCCAATATATGATAAGAAATTGACTTATGGCCA
9234323 AATGGA
510 AATGGA
* * * * *
9234329 CTATTATGCCCTCGTACCATAATCA-CAAAATTATCATTCTTTTATAACTATTTACTAAATAATC
1 CTATTATGCCCTCATACCATAATTATGAAAA-TACCATTCTTTTATAATTATTTACTAAATAAT-
** * * * * ** *
9234393 CCTTACGAAATTACCAAAATACCCCTACCATTTTATGATAAG--AGTTTACATGTGGCCAAATGG
64 -CTTATAAAATTACCAAAATACCCTTTCCATTATATGATAAGAAAG-TAACATGT-AACAAATAG
* * ** * * * * *
9234456 ACTATTAT-TCTTTTATACCATAATTATAAAAATACTCTTCTCTTATAATTATTTACTAAGT---
126 ACTATTATGCCATCGA-ATCATAATTATGAAAATAC-C-CCTATTATAATTATTTACTAAATAAA
* * ** * * *
9234517 CCC-TA-TGAAATTACCAAAATGCCCATTT-CATTATATGACAAGAAATTGACATGTA--AACCA
188 CCCTTAGT-AAATTA-CAAAAAGACCATTTCCAAAATACGATAAGAAATCGACATGTAGTAA--A
* **** * ** * ** *
9234577 A-TGCACTATTATGCCTTCCTACCATAATTGTGAAAATACC-TATTCTTTTCCAAATATTTACTA
249 ATTG-ACAATTATGCCCAAATATCATAATTACGAAAATACCATATTCTCTTATAACTATTTACTA
* * * * ** ** *
9234640 AATAAT-ACTTACAAAATTACCAAAATGCCCTTT-TTATTATATTATTAA-AAATTGACATGTAG
313 AATAATCCCTTAAAAAATTACCAAAATACCATTTCCCATTATACGA-TAAGAAATTAACATGTAG
* * * * *** * * *
9234702 TCAAATTGAC-AATGACGCCCT-AATATCATAATTGCAAAAATA-CCTTTTTTGCTTATAATCAT
377 CCAAATTGACTACT-ATGCCATCAA-ATCATAATTATGAAAATATCC-CTTTT-ATTATAATTAT
* * * * * * * *
9234764 TTACTAAATAA-TCCCTTATGAAATTAA-GAAAATAC-CCTTTTCCATTACATTATAAGAAATTA
438 TTACTAAATAATTCCC-TA-CAAAATAACCAAAACACTCC--TTCCAATATATGATAAGAAATTG
* * * *
9234826 ACATGTGGTCAAATAGA
499 ACTTATGGCCAAATGGA
* * * ** * * *
9234843 CTATTAT-ACCTCATACTATTAGTTACAAAAATAGCC-TT-TTCCTATAATTATTTACCACATAA
1 CTATTATGCCCTCATACCA-TAATTATGAAAATA-CCATTCTT-TTATAATTATTTACTAAATAA
* * * * ** * * *
9234905 TCACTCA-AGAAATTACTAAAATGCCCTTTCAATTATACAATAAGAAACTAAAATGTGACCAACA
63 T--CTTATA-AAATTACCAAAATACCCTTTCCATTATATGATAAGAAAGTAACATGT-AACAA-A
* * ** * ** *
9234969 T-GACTATTATGCCCT-TATATCATAATTATGAAAATATCCATTTTTTATAACAATTTATTAAAT
123 TAGACTATTATGCCATCGA-ATCATAATTATGAAAATA-CC-CCTATTATAATTATTTACTAAAT
*** * * * * ** * * * * * **
9235032 -AATTTTCTA-TATAATTACCGAAATGCCCTTTTCCATTATATGATATGAAATTGACATCTGGCG
185 AAACCCT-TAGTA-AATTA-CAAAAAGACCATTTCCAAAATACGATAAGAAATCGACATGTAGTA
* * * * * *
9235095 AAATGGACTATTATGCCCCCATACCTTTCCATTACGTGTTGACATTTGAAAAAAATTTACTATTA
247 AAATTGACAATTATG--CCCA-A-ATAT-CA-TA---ATT-AC----G---AAAA--TACCA-TA
* * * * *
9235160 TTCTCTCATACCATAATTAC-CAA-AATGCCCTTATCTTATAATTATTTA-CAAAATAATCTCTT
292 TTCTCTTATAAC-TATTTACTAAATAAT-CCCTTA----A-AA--AATTACCAAAAT-A-C-C--
* * * *
9235222 ATGAAATTATGAAAATGCCCTTTTCATTATCTGAT-AG-AATTGATATGTAGCCAAA-AGAGCTA
343 -----A-T-T-----T-CCC-ATT-A-TA-C-GATAAGAAATTAACATGTAGCCAAATTGA-CTA
* * * * * * * *
9235284 TTATGCCCTTATCAT-ATAATTAGGAAAATA-CCCCTTTCTTATAATTATTTACTAAATAATCCC
389 CTATGCCATCA-AATCATAATTATGAAAATATCCCTTTTATTATAATTATTTACTAAATAATTCC
* * *** * * *
9235347 CTAGAAAATTACC-AAAGTGTCATTTCCATTATATGATAAGAAATTGACATGTGAT-G-AAAAT-
453 CTACAAAATAACCAAAACACTC-CTTCCAATATATGATAAGAAATTGAC-T-T-ATGGCCAAATG
9235408 GA
514 GA
* * * ** * *
9235410 CAATTATGCCC-AAAAATATAATTATGAAAATACCCATTATCTTATAATTATTTACTAAATAATC
1 CTATTATGCCCTCATACCATAATTATGAAAATA-CCATTCTTTTATAATTATTTACTAAATAATC
* * * * * *
9235474 TTTTATAAAATCACCAAAATACCTTTTCCATTATATGACAAG-AAGTTAACATTTAGCCAAATTG
65 --TTATAAAATTACCAAAATACCCTTTCCATTATATGATAAGAAAG-TAACATGTA-ACAAATAG
* * ** * *
9235538 ACTACTATACCATCG-ATCATAATTACAAAAATACCCTTTCCATTATAATTATTTATTAAAT-AA
126 ACTATTATGCCATCGAATCATAATTATGAAAATACCC---CTATTATAATTATTTACTAAATAAA
* * * * * * * * *
9235601 TCCTCTA-TGAAATTACCAAAACACCATTCCCAATATATGATAAAAAATTGACATGTGGCT-AAA
188 CCCT-TAGT-AAATTACAAAAAGACCATTTCCAAAATACGATAAGAAATCGACATGTAG-TAAAA
* ** * * ** * *
9235664 -TGTACTATTATGCCCTCATAACATAATTGCGAAAAT--GTTCATTCTTTTATAATTATTTACTA
250 TTG-ACAATTATGCCCAAATATCATAATTACGAAAATACCAT-ATTCTCTTATAACTATTTACTA
* ** * ** ** *
9235726 AA-AATTCCTTATGAATTTACCAAAATA-CATTTTTCATTATATTATAAGAAGTTAACATGTAGC
313 AATAATCCCTTAAAAAATTACCAAAATACCATTTCCCATTATACGATAAGAAATTAACATGTAGC
* ** * * ** *
9235789 GAAATTGACT-CTTATGCCATTGAATCATAGTTATGAAAATACCCCTTCCATTATAATTATTTTC
378 CAAATTGACTAC-TATGCCATCAAATCATAATTATGAAAATATCCCTTTTATTATAATTATTTAC
* ** * * * ** *
9235853 TAAAT-ATTCTCTTATGAAATTA-CAAATAC-C-CTTTCCAACATACAATAAGAAATCGA-TATA
442 TAAATAATTC-CCTACAAAATAACCAAA-ACACTCCTTCCAATATATGATAAGAAATTGACT-TA
* * * *
9235913 TAGTCAGATTGA
504 TGGCCAAATGGA
* * *
9235925 CTATTATGCCCTCATACCATAATTACGAAAATACCATCTATTTTATAACTATTTACTAAATAATA
1 CTATTATGCCCTCATACCATAATTATGAAAATACCAT-TCTTTTATAATTATTTACTAAAT-A-A
* * * * * * ** *
9235990 TTTTTTAAAATTACCAAAATACCTTTTCCATTATATGATAGGAAATTAACATATGGCCAAATTGA
63 TCTTATAAAATTACCAAAATACCCTTTCCATTATATGATAAGAAAGTAACATGT-AACAAATAGA
* * * * *
9236055 CTATTGTGCCCTCAAATCATAATTA-GAAAAATACCCTTTCCATTATAATTATTTACTAAATAAT
127 CTATTATGCCATCGAATCATAATTATG-AAAATACCC---CTATTATAATTATTTACTAAATAAA
* * * * * * * * * * *
9236119 CCCCTA-TGAAATAACCAAAATACC-TTATGCAATATATGATAAGAAGTTGATATGTGGCT-AAA
188 CCCTTAGT-AAATTACAAAAAGACCATT-TCCAAAATACGATAAGAAATCGACATGTAG-TAAAA
* * * * ** * * * * *
9236181 TGGACTATCATGGCCTCATACCATAATTACAAAAATACCCT-TTATATTATAA-TAATTTACTAA
250 TTGACAATTATGCCCAAATATCATAATTACGAAAATACCATATTCTCTTATAACT-ATTTACTAA
** * * * * * * * * *
9236244 ATAAT-CCTTATGAAATTACTAAAATACCCTTTTCTATCATATGATAAGAAATTTACTTGAAGCC
314 ATAATCCCTTAAAAAATTACCAAAATACCATTTCCCATTATACGATAAGAAATTAACATGTAGCC
* * * * * * * *
9236308 AAATAGATTAGTATTCCCTCATACCATAATTATGAAAATACCCCTTCTT-TTATAATTA-TTA-T
379 AAATTGACTACTATGCCATCAAATCATAATTATGAAAATATCCCTT-TTATTATAATTATTTACT
* * ** ** ** * * ** * ** *
9236370 AAGTAA-TCCTTATTTAAATTGCCAAAATGCT-CTTTCAATTATATGACAAGATGTTTAGATGTG
443 AAATAATTCCCTA-CAAAATAACCAAAACACTCCTTCCAA-TATATGATAAGAAATTGACTTATG
* *
9236433 GCTAAATTGA
506 GCCAAATGGA
** * *
9236443 CTATTATGCTATCATACCATAA--A--AATACTA-CA-TCTCTTATAATTATTTACTAAATAATG
1 CTATTATGCCCTCATACCATAATTATGAA-AATACCATTCTTTTATAATTATTTACTAAATAAT-
** * * * *
9236502 GC-TA-AAAATTTATTAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGATCAAATGG
64 -CTTATAAAA-TTACCAAAATACCCTTTCCATTATATGATAAGAAAGTAACATGT-AACAAATAG
* * * * *
9236565 AAATATTGTTCTC-TC-ATACCATAATTAT-AAGAATAACCCATCTTTTATAATTATTTACTAAA
126 -ACTATTATGC-CATCGA-ATCATAATTATGAA-AAT-ACCC--CTATTATAATTATTTACTAAA
* ** * * * ** * * * **
9236627 T-AATCCTCTAAAAAATTACCAGAATGA-TATTTCCATTATATGATAAGAAATCAATATGTAGCC
184 TAAACCCT-TAGTAAATTA-CAAAAAGACCATTTCCAAAATACGATAAGAAATCGACATGTAGTA
* ** * * ** * * * * * *
9236690 AAATTTATTATTACGCTCTCATACCATAATTATGAAAATATGC-T-TTGTCCTATAATTATTTAC
247 AAATTGACAATTATGCCCAAATATCATAATTACGAAAATA-CCATATTCTCTTATAACTATTTAC
* * * * * * *
9236753 TAAATAATTTCC-TATGAAAATT-TCAAAATGCCCTTT-CCATTATAAGATAAAAAATTAACATG
311 TAAATAA-TCCCTTA-AAAAATTACCAAAATACCATTTCCCATTATACGATAAGAAATTAACATG
* * * * * * * ***
9236815 TTA-CCAAATGGACTATTATGCCCTCATATCATAATTTTGAAAATAACCATTCCCTTATAATTAT
374 -TAGCCAAATTGACTACTATGCCATCAAATCATAATTATGAAAATATCCCTTTTATTATAATTAT
* ** ** * ** * * *
9236879 TTACAAAATAA-TCTTTTATGAAATTACCAAAATGC-CCTTTCCATTATATAATAAGAAATAGAC
438 TTACTAAATAATTC-CCTACAAAATAACCAAAACACTCC-TTCCAATATATGATAAGAAATTGAC
* * *
9236942 ATGAAGG-CAAATAGA
501 -TTATGGCCAAATGGA
* * * * * *
9236957 CTATTATTCCCTCGTACCATAATTATGAAAAGACCCTTTCTCTTATAATTATTTGA-TAAGTAAT
1 CTATTATGCCCTCATACCATAATTATGAAAATA-CCATTCTTTTATAATTATTT-ACTAAATAAT
* * * * *
9237021 CTCCTGTGAAATTATCAAAATACCTTTTCCAATATATGATAA
64 CT--TATAAAATTACCAAAATACCCTTTCCATTATATGATAA
9237063 TGAATTGATA
Statistics
Matches: 2467, Mismatches: 564, Indels: 436
0.71 0.16 0.13
Matches are distributed among these distances:
510 6 0.00
511 56 0.02
512 290 0.12
513 124 0.05
514 223 0.09
515 161 0.07
516 199 0.08
517 344 0.14
518 350 0.14
519 145 0.06
520 95 0.04
521 31 0.01
522 6 0.00
524 2 0.00
525 3 0.00
526 3 0.00
527 1 0.00
529 2 0.00
534 2 0.00
537 10 0.00
538 6 0.00
539 4 0.00
540 3 0.00
541 10 0.00
542 10 0.00
544 12 0.00
545 14 0.01
547 3 0.00
548 6 0.00
549 8 0.00
550 1 0.00
551 1 0.00
552 1 0.00
556 1 0.00
557 2 0.00
559 1 0.00
560 3 0.00
561 2 0.00
562 1 0.00
564 3 0.00
565 5 0.00
566 79 0.03
567 144 0.06
568 35 0.01
569 11 0.00
570 41 0.02
571 6 0.00
572 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (515 bp):
CTATTATGCCCTCATACCATAATTATGAAAATACCATTCTTTTATAATTATTTACTAAATAATCT
TATAAAATTACCAAAATACCCTTTCCATTATATGATAAGAAAGTAACATGTAACAAATAGACTAT
TATGCCATCGAATCATAATTATGAAAATACCCCTATTATAATTATTTACTAAATAAACCCTTAGT
AAATTACAAAAAGACCATTTCCAAAATACGATAAGAAATCGACATGTAGTAAAATTGACAATTAT
GCCCAAATATCATAATTACGAAAATACCATATTCTCTTATAACTATTTACTAAATAATCCCTTAA
AAAATTACCAAAATACCATTTCCCATTATACGATAAGAAATTAACATGTAGCCAAATTGACTACT
ATGCCATCAAATCATAATTATGAAAATATCCCTTTTATTATAATTATTTACTAAATAATTCCCTA
CAAAATAACCAAAACACTCCTTCCAATATATGATAAGAAATTGACTTATGGCCAAATGGA
Found at i:9235721 original size:130 final size:129
Alignment explanation
Indices: 9235147--9237742 Score: 1635
Period size: 130 Copynumber: 20.2 Consensus size: 129
9235137 CATTTGAAAA
* * * ** * * *
9235147 AAATTTACTATTATTCTCTCATACCATAATTACCAAAATGCCC-TTATCTTATAATTATTTACAA
1 AAATGTACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTA
** * * * * *
9235211 AATAAT-CTCTTATGAAATTATGAAAATGCCCTTTTCATTATCTGAT-AG-AATTGATATGTAGC
66 AATAATCCTC-TATGAAATTACCAAAAT-ACCTTTCCATTATATGATAAGAAATTGACATGTGGC
9235273 C
129 C
* * * * *
9235274 AAAAG-AGCTATTATGCCCTTAT-CATATAATTAGGAAAATACCCCTT-TCTTATAATTATTTAC
1 AAATGTA-CTATTATGCCCTCATAC-CATAATTATGAAAATACCCATTCTCTTATAATTATTTAC
* * * *
9235336 TAAATAATCCCCTA-GAAAATTACCAAAGTGTCATTTCCATTATATGATAAGAAATTGACATGTG
64 TAAATAATCCTCTATG-AAATTACCAAAAT-ACCTTTCCATTATATGATAAGAAATTGACATGTG
*
9235400 ATG-A
127 --GCC
* * * ** *
9235404 AAATG-ACAATTATGCCC-AAAAATATAATTATGAAAATACCCATTATCTTATAATTATTTACTA
1 AAATGTACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTA
* * * * * * * * *
9235467 AATAATCTTTTATAAAATCACCAAAATACCTTTTCCATTATATGACAAGAAGTTAACATTTAGCC
66 AATAATCCTCTATGAAATTACCAAAATACC-TTTCCATTATATGATAAGAAATTGACATGTGGCC
* * * ** *
9235532 AAAT-TGACTACTATACCATCGAT--CATAATTACAAAAATACCCTTTC-CATTATAATTATTTA
1 AAATGT-ACTATTATGCCCTC-ATACCATAATTATGAAAATACCCATTCTC-TTATAATTATTTA
* * * * *
9235593 TTAAATAATCCTCTATGAAATTACCAAAACACCATTCCCAATATATGATAAAAAATTGACATGTG
63 CTAAATAATCCTCTATGAAATTACCAAAATACC-TTTCCATTATATGATAAGAAATTGACATGTG
*
9235658 GCT
127 GCC
* ** *** *
9235661 AAATGTACTATTATGCCCTCATAACATAATTGCGAAAATGTTCATTCTTTTATAATTATTTACTA
1 AAATGTACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTA
* * * * * * *
9235726 AA-AATTCCT-TATGAATTTACCAAAATACATTTTTCATTATATTATAAGAAGTTAACATGTAGC
66 AATAA-TCCTCTATGAAATTACCAAAATAC-CTTTCCATTATATGATAAGAAATTGACATGTGGC
*
9235789 G
129 C
* * * * * * *
9235790 AAAT-TGACTCTTATGCCATTGA-ATCATAGTTATGAAAATACCCCTTC-CATTATAATTATTTT
1 AAATGT-ACTATTATGCC-CTCATACCATAATTATGAAAATACCCATTCTC-TTATAATTATTTA
* ** ** * * *
9235852 CTAAAT-ATTCTCTTATGAAATTA-C-AAATACCCTTTCCAACATACAATAAGAAATCGATATAT
63 CTAAATAATCCTC-TATGAAATTACCAAAATA-CCTTTCCATTATATGATAAGAAATTGACATGT
* *
9235914 AGTC
126 GGCC
* * * * *
9235918 AGAT-TGACTATTATGCCCTCATACCATAATTACGAAAATA-CCATCTATTTTATAACTATTTAC
1 AAATGT-ACTATTATGCCCTCATACCATAATTATGAAAATACCCAT-TCTCTTATAATTATTTAC
** * * * * * *
9235981 TAAATAATATTTTTTAAAATTACCAAAATACCTTTTCCATTATATGATAGGAAATTAACATATGG
64 TAAATAATCCTCTATGAAATTACCAAAATACC-TTTCCATTATATGATAAGAAATTGACATGTGG
9236046 CC
128 CC
* * * *
9236048 AAAT-TGACTATTGTGCCCTCAAATCATAATTA-GAAAAATACCCTTTC-CATTATAATTATTTA
1 AAATGT-ACTATTATGCCCTCATACCATAATTATG-AAAATACCCATTCTC-TTATAATTATTTA
* * * * * *
9236110 CTAAATAATCCCCTATGAAATAACCAAAATACCTTATGCAATATATGATAAGAAGTTGATATGTG
63 CTAAATAATCCTCTATGAAATTACCAAAATACCTT-TCCATTATATGATAAGAAATTGACATGTG
*
9236175 GCT
127 GCC
* * * ** * * * *
9236178 AAATGGACTATCATGGCCTCATACCATAATTACAAAAATACCCTTTATATTATAATAATTTACTA
1 AAATGTACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTA
* * * * * **
9236243 AATAATCCT-TATGAAATTACTAAAATACCCTTTTCTATCATATGATAAGAAATTTACTTGAAGC
66 AATAATCCTCTATGAAATTACCAAAATA-CC-TTTCCATTATATGATAAGAAATTGACATGTGGC
9236307 C
129 C
* * * * *
9236308 AAATAG-ATTAGTATTCCCTCATACCATAATTATGAAAATACCCCTTCTTTTATAATTA-TTA-T
1 AAAT-GTACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACT
* * * * * * ** * *
9236370 AAGTAATCCT-TATTTAAATTGCCAAAATGCTCTTTCAATTATATGACAAGATGTTTAGATGTGG
65 AAATAATCCTCTA-TGAAATTACCAAAATAC-CTTTCCATTATATGATAAGAAATTGACATGTGG
*
9236434 CT
128 CC
** *
9236436 AAAT-TGACTATTATGCTATCATACC---A-TA--AAAATACTACA-TCTCTTATAATTATTTAC
1 AAATGT-ACTATTATGCCCTCATACCATAATTATGAAAATAC-CCATTCTCTTATAATTATTTAC
** * **
9236493 TAAATAAT-GGCTA-AAAATTTATTAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTG
64 TAAATAATCCTCTATGAAA-TTACCAAAATA-CCTTTCCATTATATGATAAGAAATTGACATGTG
**
9236556 ATC
127 GCC
* * * * * *
9236559 AAATGGAAATATTGTTCTCTCATACCATAATTAT-AAGAATAACCCA-TCTTTTATAATTATTTA
1 AAAT-GTACTATTATGCCCTCATACCATAATTATGAA-AAT-ACCCATTCTCTTATAATTATTTA
** * ** ** * *
9236622 CTAAATAATCCTCTAAAAAATTACCAGAATGATATTTCCATTATATGATAAGAAATCAATATGTA
63 CTAAATAATCCTCTATGAAATTACCAAAAT-ACCTTTCCATTATATGATAAGAAATTGACATGTG
9236687 GCC
127 GCC
* * * * ** * * *
9236690 AAATTTATTATTACGCTCTCATACCATAATTATGAAAATATGCTTTGTCCTATAATTATTTACTA
1 AAATGTACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTA
* * * * * * **
9236755 AATAAT-TTCCTATGAAAATT-TCAAAATGCCCTTTCCATTATAAGATAAAAAATTAACATGTTA
66 AATAATCCT-CTATG-AAATTACCAAAAT-ACCTTTCCATTATATGATAAGAAATTGACATGTGG
9236818 CC
128 CC
* * * * * *
9236820 AAATGGACTATTATGCCCTCATATCATAATTTTGAAAATAACCATTCCCTTATAATTATTTACAA
1 AAATGTACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTA
* * * * * *
9236885 AATAATCTTTTATGAAATTACCAAAATGCCCTTTCCATTATATAATAAGAAATAGACATGAAGG-
66 AATAATCCTCTATGAAATTACCAAAAT-ACCTTTCCATTATATGATAAGAAATTGACATG-TGGC
9236949 C
129 C
* * * *
9236950 AAATAG-ACTATTATTCCCTCGTACCATAATTATGAAAAGACCCTTTCTCTTATAATTATTTGA-
1 AAAT-GTACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTT-AC
* * * * * *
9237013 TAAGTAAT-CTCCTGTGAAATTATCAAAATACCTTTTCCAATATATGATAATG-AATTGATATGA
64 TAAATAATCCT-CTATGAAATTACCAAAATACC-TTTCCATTATATGATAA-GAAATTGACATGT
9237076 GGCC
126 GGCC
** * * * * * *
9237080 AAATAG-ACTAGCATGCCCTTATACTATAATTA-CAAAATTACCC-TTATTTTAAAATTATTTAC
1 AAAT-GTACTATTATGCCCTCATACCATAATTATGAAAA-TACCCATTCTCTTATAATTATTTAC
* * * * * * *
9237142 CAAATAATCTTTTATGAAATTACCAAAATTCCCTATCCATTATATGATAAAAAATTGACATGT-A
64 TAAATAATCCTCTATGAAATTACCAAAA-TACCTTTCCATTATATGATAAGAAATTGACATGTGG
9237206 CC
128 CC
* * * * * * *
9237208 GAAAAGGACTATTATTCCCTCACACCATAACTATG-AAATACCC-TTATCTTATAATTATTTATT
1 -AAATGTACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACT
* * * ** * * * *
9237271 GAATAAT-CTCTAATGAAATTATCAAAA-CCCTTTATATTATATAATAAAAAATTGACATATGAC
65 AAATAATCCTCT-ATGAAATTACCAAAATACCTTTCCATTATATGATAAGAAATTGACATGTGGC
9237334 C
129 C
* * * * *
9237335 AAATGGACTATTATGCCC-CATGCCATAATTATGAAAATACCCCTGT-GCTTATAAGTATTTACT
1 AAATGTACTATTATGCCCTCATACCATAATTATGAAAATACCCAT-TCTCTTATAATTATTTACT
* * * * * *
9237398 AAATAATCTTCTAAGCAATTACTAAAATGCTCTTTCCATTATATGATTAA-AAATTGACATGTAG
65 AAATAATCCTCTATGAAATTACCAAAATAC-CTTTCCATTATATGA-TAAGAAATTGACATGTGG
**
9237462 TT
128 CC
* * * * * *
9237464 AAAT-TGACTATTATACCATTATACCCTAATTAGGAAAATACCC-TTCTCTTATAATTATTTACA
1 AAATGT-ACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACT
* * * *
9237527 AAATAATCC-CTTTAAAAATTACCAAAATGCCTTTTCCATT-TATGATAAG-ATTTGACATGTGG
65 AAATAATCCTCTAT-GAAATTACCAAAATACC-TTTCCATTATATGATAAGAAATTGACATGTGG
*
9237589 CA
128 CC
* * * * * * * *
9237591 AAATGCACTATTATGTTCC-AATACCATCATTA-CAAAATACCCATTTTCTTATAGTTATTTATT
1 AAATGTACTATTATG-CCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACT
* * * * *
9237654 AAATAATCACT-TATGAAATTACCAAAAAACCTTTTCCAATATATGCTAAGAAATTGACAAGTAG
65 AAATAATC-CTCTATGAAATTACCAAAATACC-TTTCCATTATATGATAAGAAATTGACATGTGG
9237718 CC
128 CC
* * * *
9237720 AAGTGGACTTTTATGCCTTCATA
1 AAATGTACTATTATGCCCTCATA
9237743 TGCCTTCCAT
Statistics
Matches: 1903, Mismatches: 451, Indels: 228
0.74 0.17 0.09
Matches are distributed among these distances:
122 22 0.01
123 41 0.02
124 27 0.01
125 13 0.01
126 64 0.03
127 206 0.11
128 251 0.13
129 536 0.28
130 674 0.35
131 64 0.03
132 5 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (129 bp):
AAATGTACTATTATGCCCTCATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTA
AATAATCCTCTATGAAATTACCAAAATACCTTTCCATTATATGATAAGAAATTGACATGTGGCC
Found at i:9238316 original size:94 final size:93
Alignment explanation
Indices: 9238200--9238381 Score: 251
Period size: 94 Copynumber: 1.9 Consensus size: 93
9238190 TACCCATTCC
* *
9238200 TTTATAATTATTTAATAATAATCCCCTAAGAAATTACTAAAAT-GCCTTTTCCATTATATGATAA
1 TTTATAATTATTTAATAATAATCCCCTAAGAAATTACCAAAATAGCC-TATCCATTATATGATAA
9238264 AAAATTGACATG-GGACCAAATGGATTGCT
65 AAAATTGACATGTGG-CCAAATGGATTGCT
* * * *
9238293 TTTATAATTATTTACTAAATAATCCCTTACGAAATTACCAAAATATCCTATCCATTATATGATAA
1 TTTATAATTATTTAAT-AATAATCCCCTAAGAAATTACCAAAATAGCCTATCCATTATATGATAA
* *
9238358 CAAATTGATATGTGGCCAAATGGA
65 AAAATTGACATGTGGCCAAATGGA
9238382 CTATTATTCT
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
93 15 0.19
94 59 0.76
95 4 0.05
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (93 bp):
TTTATAATTATTTAATAATAATCCCCTAAGAAATTACCAAAATAGCCTATCCATTATATGATAAA
AAATTGACATGTGGCCAAATGGATTGCT
Found at i:9238642 original size:129 final size:129
Alignment explanation
Indices: 9238291--9239541 Score: 1169
Period size: 128 Copynumber: 9.6 Consensus size: 129
9238281 AAATGGATTG
* ** *
9238291 CTTTTATAATTATTTACTAAATAATCCCTTACGAAATTACCAAAATATCCTATCCATTATATGAT
1 CTTTTATAATTATTTACTAAATAATCCCTTAAGAAATTACCAAAATGCCCTTTCCATTATATGAT
* * * * **
9238356 AACAAATTGATATGTGGCCAAATGGACTATTAT-TCTCTCATACCATAATTACAAAAATACATTT
66 AAGAAATTGATATGTGACCAAATGGACTATTATGCCT-TCATACCATAATTATAAAAATACCCTT
* * * * * * *
9238420 CTCTTATAA-TATTTATTAAA-AAACTCTTATA-AAATTCCCAAAATGCCTTTTCCATTATATAA
1 CTTTTATAATTATTTACTAAATAATCCCTTA-AGAAATTACCAAAATGCCCTTTCCATTATATGA
* *
9238482 TAAGAAATTGATATGTAGACC-AATGGACTATTATGCCTTCATACCATAGTTACAAAAATACCCC
65 TAAGAAATTGATATGT-GACCAAATGGACTATTATGCCTTCATACCATAATTATAAAAATA-CCC
*
9238546 AT
128 TT
*
9238548 CTTTTATAATTATTTACTAAATAATCCCATAAGAAATTACCAAAATGCCCTTT-CATTATATGAT
1 CTTTTATAATTATTTACTAAATAATCCCTTAAGAAATTACCAAAATGCCCTTTCCATTATATGAT
* * *
9238612 AAGAAATTAACATGTGACCAAATAGACTATTATGCCCTT-ATACCATAATTATGAAAATATAAAA
66 AAGAAATTGATATGTGACCAAATGGACTATTATG-CCTTCATACCAT-A--AT-----TAT-AAA
9238676 AATACCCTT
121 AATACCCTT
* * * *
9238685 CTCTTATAATTATATACTAAATAATCCCTTAAGAAATTACCAAAATACACC-ATCCATTATATGA
1 CTTTTATAATTATTTACTAAATAATCCCTTAAGAAATTACCAAAATGC-CCTTTCCATTATATGA
* ** * * **
9238749 TAAGAAATTGATATGTGGA-TAAATACACTATTAT-TCTCTCATACCATAATTATGAAAATACGA
65 TAAGAAATTGATATGT-GACCAAATGGACTATTATGCCT-TCATACCATAATTATAAAAATACCC
9238812 TT
128 TT
* * * * **
9238814 -TTCTTATAATTATTTACTAAA-AAACTCC-TATGAAATTACCAAAATGCCATTTTCATTATACA
1 CTT-TTATAATTATTTACTAAATAATC-CCTTAAGAAATTACCAAAATGCCCTTTCCATTATATG
*
9238876 ATAAGAAATTGATATGT-AGCCAAATGGACTATTATGCCCTT-ATACCATAATTATAAAAAAACC
64 ATAAGAAATTGATATGTGA-CCAAATGGACTATTATG-CCTTCATACCATAATTATAAAAATACC
9238939 CATT
127 C-TT
* * * **
9238943 CTTTTATAATTATTTACTAAATAAT-CCTATTAGAAATTACCAAAATGCCCTTTACATTGTACAA
1 CTTTTATAATTATTTACTAAATAATCCCT-TAAGAAATTACCAAAATGCCCTTTCCATTATATGA
* * * * *
9239007 TAAGAGATTAACATGTGACCAAATGGACTATTATGCCTTTATACCATAATTATGAAAATACCCTT
65 TAAGAAATTGATATGTGACCAAATGGACTATTATGCCTTCATACCATAATTATAAAAATACCCTT
* * * ** ** *
9239072 CTTTTATAATTATTTAATAAATAATCCCTTATGAAATTATCAAAATAACCTTTCTGTTCTATGAT
1 CTTTTATAATTATTTACTAAATAATCCCTTAAGAAATTACCAAAATGCCCTTTCCATTATATGAT
* * * * *
9239137 AA-AAAGTTGATATGTGGCCAAATGGGCTATTATTCTCTT-ATACCA-AATTATAAAAAGACCAT
66 AAGAAA-TTGATATGTGACCAAATGGACTATTATGC-CTTCATACCATAATTATAAAAATACCCT
9239199 T
129 T
* * *** *
9239200 -TTCTTATAATTATTTACTAAATAATCCATTATGAAATTATTGAAATGCCCTTTCCATTATATAA
1 CTT-TTATAATTATTTACTAAATAATCCCTTAAGAAATTACCAAAATGCCCTTTCCATTATATGA
* * * * * * * *
9239264 TAA-AAAGTTGATACGTGGCCAAGTGAACTATTATGCCCTCATACCATAATTACAAAAATATTCT
65 TAAGAAA-TTGATATGTGACCAAATGGACTATTATGCCTTCATACCATAATTATAAAAATA-CCC
9239328 TT
128 TT
* * * * * * * *
9239330 CTATTATAATTGTTTACCAAACAATCCCTTAAGAAAAATACTAAAACGCCTTTTCCATTATATGA
1 CTTTTATAATTATTTACTAAATAATCCCTTAAG-AAATTACCAAAATGCCCTTTCCATTATATGA
* * * * *
9239395 TAAGAAATTAACATGT-AGCCAAATGAACTATTATGCCCTCATACCATAATTATGAAAATACCCT
65 TAAGAAATTGATATGTGA-CCAAATGGACTATTATGCCTTCATACCATAATTATAAAAATACCC-
9239459 TT
128 TT
* * * * * ** *
9239461 CTTTTATAATTATTTCCAAAATAATCTCTTATGAATTTACCAAAATAACCTTTCCATTAAATGAT
1 CTTTTATAATTATTTACTAAATAATCCCTTAAGAAATTACCAAAATGCCCTTTCCATTATATGAT
9239526 AAGAAATTGATATGTG
66 AAGAAATTGATATGTG
9239542 CCTTTATAGC
Statistics
Matches: 919, Mismatches: 153, Indels: 98
0.79 0.13 0.08
Matches are distributed among these distances:
126 1 0.00
127 86 0.09
128 213 0.23
129 209 0.23
130 191 0.21
131 103 0.11
132 4 0.00
135 2 0.00
136 2 0.00
137 53 0.06
138 53 0.06
139 2 0.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (129 bp):
CTTTTATAATTATTTACTAAATAATCCCTTAAGAAATTACCAAAATGCCCTTTCCATTATATGAT
AAGAAATTGATATGTGACCAAATGGACTATTATGCCTTCATACCATAATTATAAAAATACCCTT
Found at i:9238907 original size:128 final size:128
Alignment explanation
Indices: 9238294--9239541 Score: 1140
Period size: 129 Copynumber: 9.6 Consensus size: 128
9238284 TGGATTGCTT
* * * * *
9238294 TTATAATTATTTACTAAATAATCCCTTACGAAATTACCAAAATATCCTATCCATTATATGATAAC
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAAT-GCCTTTTCATTATATGATAAG
* * *
9238359 AAATTGATATGTGGCCAAATGGACTATTATTCTCTCATACCATAATTACAAAAATA-CATTTCTC
65 AAATTGATATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTATAAAAATACCATTT-TC
* * * * * *
9238423 TTATAA-TATTTATTAAA-AAACTCTTATAAAATTCCCAAAATGCCTTTTCCATTATATAATAAG
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCTTTT-CATTATATGATAAG
* * * * *
9238486 AAATTGATATGTAGACC-AATGGACTATTATGCCTTCATACCATAGTTACAAAAATACCCCATCT
65 AAATTGATATGT-GGCCAAATGGACTATTATGCCCTCATACCATAATTATAAAAATA--CCATTT
9238550 T-
127 TC
* * *
9238551 TTATAATTATTTACTAAATAATCCCATAAGAAATTACCAAAATGCCCTTTCATTATATGATAAGA
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCTTTTCATTATATGATAAGA
* * * * *
9238616 AATTAACATGTGACCAAATAGACTATTATGCCCTTATACCATAATTATGAAAATATAAAAAATAC
66 AATTGATATGTGGCCAAATGGACTATTATGCCCTCATACCAT-A--AT-----TAT-AAAAATAC
* *
9238681 CCTTCTC
122 CATTTTC
* * * ** *
9238688 TTATAATTATATACTAAATAATCCCTTAAGAAATTACCAAAATACACCATCCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGC-CTTTTCATTATATGATAAG
** ** * * * *
9238753 AAATTGATATGTGGATAAATACACTATTATTCTCTCATACCATAATTATGAAAATACGATTTTC
65 AAATTGATATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTATAAAAATACCATTTTC
* **
9238817 TTATAATTATTTACTAAA-AAACTCC-TATGAAATTACCAAAATGCCATTTTCATTATACAATAA
1 TTATAATTATTTACTAAATAATC-CCTTATGAAATTACCAAAATGCC-TTTTCATTATATGATAA
* * *
9238880 GAAATTGATATGTAGCCAAATGGACTATTATGCCCTTATACCATAATTATAAAAAAACCCATTCT
64 GAAATTGATATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTATAAAAATA-CCATT-T
9238945 T-
127 TC
* * * **
9238946 TTATAATTATTTACTAAATAATCCTATTA-GAAATTACCAAAATGCCCTTTACATTGTACAATAA
1 TTATAATTATTTACTAAATAATCC-CTTATGAAATTACCAAAATG-CCTTTTCATTATATGATAA
* * * * * * * *
9239010 GAGATTAACATGTGACCAAATGGACTATTATGCCTTTATACCATAATTATGAAAATACCCTTCTT
64 GAAATTGATATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTATAAAAATACCATT-TT
9239075 -
128 C
* * * * *
9239075 TTATAATTATTTAATAAATAATCCCTTATGAAATTATCAAAATAACC-TTTCTGTTCTATGATAA
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAAT-GCCTTTTC-ATTATATGATAA
* * * * *
9239139 -AAAGTTGATATGTGGCCAAATGGGCTATTATTCTCTTATACCA-AATTATAAAAAGACCATTTT
64 GAAA-TTGATATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTATAAAAATACCATTTT
9239202 C
128 C
* *** * *
9239203 TTATAATTATTTACTAAATAATCCATTATGAAATTATTGAAATGCCCTTTCCATTATATAATAA-
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATG-CCTTTTCATTATATGATAAG
* * * * *
9239267 AAAGTTGATACGTGGCCAAGTGAACTATTATGCCCTCATACCATAATTACAAAAATATTC-TTTC
65 AAA-TTGATATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTATAAAAATA-CCATTT-
*
9239331 TA
127 TC
* * * * * * *
9239333 TTATAATTGTTTACCAAACAATCCCTTAAGAAAAATACTAAAACGCCTTTTCCATTATATGATAA
1 TTATAATTATTTACTAAATAATCCCTTATG-AAATTACCAAAATGCCTTTT-CATTATATGATAA
* * * * * *
9239398 GAAATTAACATGTAGCCAAATGAACTATTATGCCCTCATACCATAATTATGAAAATACCCTTTCT
64 GAAATTGATATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTATAAAAATACCATTT-T
*
9239463 T
128 C
* * * * * * *
9239464 TTATAATTATTTCCAAAATAATCTCTTATGAATTTACCAAAATAACCTTTCCATTAAATGATAAG
1 TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAAT-GCCTTTTCATTATATGATAAG
9239529 AAATTGATATGTG
65 AAATTGATATGTG
9239542 CCTTTATAGC
Statistics
Matches: 914, Mismatches: 163, Indels: 83
0.79 0.14 0.07
Matches are distributed among these distances:
126 4 0.00
127 81 0.09
128 211 0.23
129 218 0.24
130 181 0.20
131 106 0.12
132 4 0.00
135 2 0.00
136 4 0.00
137 45 0.05
138 58 0.06
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (128 bp):
TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCTTTTCATTATATGATAAGA
AATTGATATGTGGCCAAATGGACTATTATGCCCTCATACCATAATTATAAAAATACCATTTTC
Found at i:9239260 original size:387 final size:385
Alignment explanation
Indices: 9238291--9239541 Score: 1538
Period size: 387 Copynumber: 3.2 Consensus size: 385
9238281 AAATGGATTG
* * *
9238291 CTTTTATAATTATTTACTAAATAATCCCTTACGAAATTACCAAAATATCCTATCCATTATATGAT
1 CTTTTATAATTATTTAATAAATAATCCCTTATGAAATTACCAAAATAACCTATCCATTATATGAT
* *
9238356 AACAAATTGATATGTGGCCAAATGGACTATTATTCTCTCATACCATAATTACAAAAATA-CATTT
66 AAGAAATTGATATGTGGCCAAATGGACTATTATTCTCTCATACCATAATTATAAAAATACCATTT
* * * * *
9238420 CTCTTATAA-TATTTATTAAAAAACTCTTATAAAATTCCCAAAATGCCTTTTCCATTATATAATA
131 -TCTTATAATTATTTACTAAAAATC-CTTATGAAATTACCAAAATGCCATTTCCATTATATAATA
* *
9238484 AGAAATTGATATGTAGACC-AATGGACTATTATG-CCTTCATACCATAGTTACAAAAATACCCCA
194 AGAAATTGATATGTAG-CCAAATGGACTATTATGCCCTT-ATACCATAATTACAAAAA-AACCCA
*
9238547 -TCTTTTATAATTATTTACTAAATAATCCCATAAGAAATTACCAAAATGCCCTTTCATTATATGA
256 TTCTTTTATAATTATTTACTAAATAATCCTATAAGAAATTACCAAAATGCCCTTTCATTATATGA
*
9238611 TAAGAAATTAACATGTGACCAAATAGACTATTATGCCCTTATACCATAATTATGAAAATATAAAA
321 TAAGAAATTAACATGTGACCAAATGGACTATTATGCCCTTATACCATAATTATG---------AA
9238676 AATACCCTT
377 AATACCCTT
* * * *
9238685 CTCTTATAATTATATACTAAATAATCCCTTAAGAAATTACCAAAATACACC-ATCCATTATATGA
1 CTTTTATAATTATTTAATAAATAATCCCTTATGAAATTACCAAAATA-ACCTATCCATTATATGA
** ** * *
9238749 TAAGAAATTGATATGTGGATAAATACACTATTATTCTCTCATACCATAATTATGAAAATACGATT
65 TAAGAAATTGATATGTGGCCAAATGGACTATTATTCTCTCATACCATAATTATAAAAATACCATT
* *
9238814 TTCTTATAATTATTTACTAAAAAACTCC-TATGAAATTACCAAAATGCCATTTTCATTATACAAT
130 TTCTTATAATTATTTACT-AAAAA-TCCTTATGAAATTACCAAAATGCCATTTCCATTATATAAT
*
9238878 AAGAAATTGATATGTAGCCAAATGGACTATTATGCCCTTATACCATAATTATAAAAAAACCCATT
193 AAGAAATTGATATGTAGCCAAATGGACTATTATGCCCTTATACCATAATTACAAAAAAACCCATT
* * **
9238943 CTTTTATAATTATTTACTAAATAATCCTATTAGAAATTACCAAAATGCCCTTTACATTGTACAAT
258 CTTTTATAATTATTTACTAAATAATCCTATAAGAAATTACCAAAATGCCCTTT-CATTATATGAT
* *
9239008 AAGAGATTAACATGTGACCAAATGGACTATTATGCCTTTATACCATAATTATGAAAATACCCTT
322 AAGAAATTAACATGTGACCAAATGGACTATTATGCCCTTATACCATAATTATGAAAATACCCTT
* * ** *
9239072 CTTTTATAATTATTTAATAAATAATCCCTTATGAAATTATCAAAATAACCTTTCTGTTCTATGAT
1 CTTTTATAATTATTTAATAAATAATCCCTTATGAAATTACCAAAATAACCTATCCATTATATGAT
* * *
9239137 AA-AAAGTTGATATGTGGCCAAATGGGCTATTATTCTCTTATACCA-AATTATAAAAAGACCATT
66 AAGAAA-TTGATATGTGGCCAAATGGACTATTATTCTCTCATACCATAATTATAAAAATACCATT
*** *
9239200 TTCTTATAATTATTTACTAAATAATCCATTATGAAATTATTGAAATGCCCTTTCCATTATATAAT
130 TTCTTATAATTATTTACTAAA-AATCC-TTATGAAATTACCAAAATGCCATTTCCATTATATAAT
* * * * * * ** *
9239265 AA-AAAGTTGATACGTGGCCAAGTGAACTATTATGCCCTCATACCATAATTACAAAAATATTCTT
193 AAGAAA-TTGATATGTAGCCAAATGGACTATTATGCCCTTATACCATAATTACAAAAAAACCCAT
* * * * * * * *
9239329 TCTATTATAATTGTTTACCAAACAATCCCT-TAAGAAAAATACTAAAACGCCTTTTCCATTATAT
257 TCTTTTATAATTATTTACTAAATAAT-CCTATAAG-AAATTACCAAAATGCCCTTT-CATTATAT
* *
9239393 GATAAGAAATTAACATGT-AGCCAAATGAACTATTATGCCCTCATACCATAATTATGAAAATACC
319 GATAAGAAATTAACATGTGA-CCAAATGGACTATTATGCCCTTATACCATAATTATGAAAATACC
9239457 CTTT
383 C-TT
* * * * *
9239461 CTTTTATAATTATTTCCA-AAATAATCTCTTATGAATTTACCAAAATAACCTTTCCATTAAATGA
1 CTTTTATAATTATTT-AATAAATAATCCCTTATGAAATTACCAAAATAACCTATCCATTATATGA
9239525 TAAGAAATTGATATGTG
65 TAAGAAATTGATATGTG
9239542 CCTTTATAGC
Statistics
Matches: 747, Mismatches: 89, Indels: 47
0.85 0.10 0.05
Matches are distributed among these distances:
385 6 0.01
386 44 0.06
387 204 0.27
388 83 0.11
389 69 0.09
390 4 0.01
394 125 0.17
395 143 0.19
396 68 0.09
397 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (385 bp):
CTTTTATAATTATTTAATAAATAATCCCTTATGAAATTACCAAAATAACCTATCCATTATATGAT
AAGAAATTGATATGTGGCCAAATGGACTATTATTCTCTCATACCATAATTATAAAAATACCATTT
TCTTATAATTATTTACTAAAAATCCTTATGAAATTACCAAAATGCCATTTCCATTATATAATAAG
AAATTGATATGTAGCCAAATGGACTATTATGCCCTTATACCATAATTACAAAAAAACCCATTCTT
TTATAATTATTTACTAAATAATCCTATAAGAAATTACCAAAATGCCCTTTCATTATATGATAAGA
AATTAACATGTGACCAAATGGACTATTATGCCCTTATACCATAATTATGAAAATACCCTT
Found at i:9239642 original size:110 final size:111
Alignment explanation
Indices: 9239439--9239643 Score: 258
Period size: 110 Copynumber: 1.8 Consensus size: 111
9239429 GCCCTCATAC
* * * * *
9239439 CATAATTATGAAAATACCCTTTCTTTTATAATTATTTCCAAAATAATCTCTTATGAATTTACCAA
1 CATAATTATGAAAATACCCCTTCTTTTATAATTATTTACAAAATAATCCCTCATGAAATTACCAA
9239504 AATAACCTTTCCATTAAATGATAAGAAATTGATATGTGCCTTTATAG
66 AATAACCTTTCCATTAAA-GATAAGAAATTGATATGTGCCTTTATAG
* * *
9239551 CATAATT-T-AAAATTCCCCTTCTCTTT-TAATTATTTACTAAATAATCCCTCATGAAATTACTA
1 CATAATTATGAAAATACCCCTTCT-TTTATAATTATTTACAAAATAATCCCTCATGAAATTACCA
9239613 AAAT-ACCTTTTCCATTATTAA-ATAAGAAATT
65 AAATAACC-TTTCCATTA--AAGATAAGAAATT
9239644 AACACATGGA
Statistics
Matches: 81, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
109 3 0.04
110 65 0.80
111 4 0.05
112 9 0.11
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.40
Consensus pattern (111 bp):
CATAATTATGAAAATACCCCTTCTTTTATAATTATTTACAAAATAATCCCTCATGAAATTACCAA
AATAACCTTTCCATTAAAGATAAGAAATTGATATGTGCCTTTATAG
Found at i:9240305 original size:128 final size:129
Alignment explanation
Indices: 9240019--9240809 Score: 703
Period size: 128 Copynumber: 6.2 Consensus size: 129
9240009 AACTCTTTTT
* ** * * * *
9240019 TAATTATTCACTAAATAAT-TCTCTA-GAAAATTACCAAAATGTCATTTTCATTATA-CAAAAGA
1 TAATTATTTACTAAATAATCTC-CTATG-AAATTACCAAAATACCCTTTCCATTATATGATAAGA
** ** * * * *
9240081 AATTGACATAAGGCCAAATTGA-TAATTGTGCCCTCATACCTTAATTATGAAAATACCCATTTTC
64 AATTGACATGTGATCAAATGGACT-ATTATGCCCTCATACCATAATTATGAAAATACCC-TTCTC
9240145 TTA
127 TTA
* ** *
9240148 TAATTATTTGCTAAATAATC-CCTAGTGAAATTTTCAAAATACTCTTTCCATTATATGATAAGAA
1 TAATTATTTACTAAATAATCTCCTA-TGAAATTACCAAAATACCCTTTCCATTATATGATAAGAA
* * *
9240212 ATTGATATGTGATCAAATGGACTATTATGCCCTCATACCATAATCA-GAAAAAACCCTTCTCTTA
65 ATTGACATGTGATCAAATGGACTATTATGCCCTCATACCATAATTATGAAAATACCCTTCTCTTA
** * * *
9240276 TAATTATTTACTAAATAATCTTTTATGAAATTACCAAAATACCCTTACCATTTTATGATAAAAAA
1 TAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAA
* ** * *** **
9240341 TTTACATGTGGCCAAATGGATTA-TATTATCTCATACCATAATTACAAAAATACCCTTAC-CTTA
66 TTGACATGTGATCAAATGGACTATTATGCCCTCATACCATAATTATGAAAATACCCTT-CTCTTA
* * * * * * *
9240404 TAATTATTTACTAACTAATCCCCAATG-AATTACCAAAATGCCCTTTTCATTATATGACAATAAA
1 TAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAA
* * * * *
9240468 TTGACATGTAACCAAATGGACT-TTCTGCCCTCATGCCATAATTATGAAAATACCCAT-TCTTA
66 TTGACATGTGATCAAATGGACTATTATGCCCTCATACCATAATTATGAAAATACCCTTCTCTTA
* * * * * **
9240530 TAAATATTTACTAAATAAT-TCCATAAGAAATTACCAAAATGCCCTCTCTATTATATGATTGGAA
1 TAATTATTTACTAAATAATCTCC-TATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAA
* * * * ** * *
9240594 ATTGACATGTTG-TCAAATTGACAATTATGCCTTCATATCATAATTACCAAAATACCTTTTCTGT
65 ATTGACATG-TGATCAAATGGACTATTATGCCCTCATACCATAATTATGAAAATACC-CTTCTCT
9240658 TA
128 TA
* * * ** * * *
9240660 TAATCATTTACTAAATAATCCCCCAATG-AATTAAGAAAATATCATTTCCATTACT-TTATAAGA
1 TAATTATTTACTAAATAAT-CTCCTATGAAATTACCAAAATACCCTTTCCATTA-TATGATAAGA
* **
9240723 AATTGACATGTGATCAAATGGATTATTATGCCCTCATACCATAGGTATGAAAATACCCTTCTCTT
64 AATTGACATGTGATCAAATGGACTATTATGCCCTCATACCATAATTATGAAAATACCCTTCTCTT
9240788 A
129 A
*
9240789 TAATTATTTACTATATAATCT
1 TAATTATTTACTAAATAATCT
9240810 TAAGAAATTA
Statistics
Matches: 523, Mismatches: 119, Indels: 41
0.77 0.17 0.06
Matches are distributed among these distances:
125 2 0.00
126 23 0.04
127 138 0.26
128 145 0.28
129 78 0.15
130 131 0.25
131 4 0.01
132 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (129 bp):
TAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAA
TTGACATGTGATCAAATGGACTATTATGCCCTCATACCATAATTATGAAAATACCCTTCTCTTA
Found at i:9240890 original size:24 final size:24
Alignment explanation
Indices: 9240815--9240890 Score: 77
Period size: 23 Copynumber: 3.2 Consensus size: 24
9240805 AATCTTAAGA
*
9240815 AATTACTTATGAAAATACCCTTTC
1 AATTATTTATGAAAATACCCTTTC
* * * *
9240839 AATTA-TAATTATAAT-CTCTTAT-
1 AATTATTTATGAAAATACCCTT-TC
9240861 AATTATTTATGAAAATACCCTTTC
1 AATTATTTATGAAAATACCCTTTC
9240885 AATTAT
1 AATTAT
9240891 ATGATAAGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
22 9 0.22
23 16 0.40
24 15 0.38
ACGTcount: A:0.39, C:0.14, G:0.03, T:0.43
Consensus pattern (24 bp):
AATTATTTATGAAAATACCCTTTC
Found at i:9241217 original size:186 final size:191
Alignment explanation
Indices: 9240875--9241247 Score: 481
Period size: 186 Copynumber: 2.0 Consensus size: 191
9240865 ATTTATGAAA
* ** *
9240875 ATACCCTTTCAATTATATGATAAGAAATTGACTATGTGACCAAATTGACTATTATGCTTTCATAT
1 ATACCCTTTCAATTATATGATAAGAAATTGACTATGTGACAAAATTGACTATTATGCCCTCATAC
* *
9240940 CATAATTATGAAAATACCCTTTCTCTTAGAATTATTTACTAAATAATTTCTTATTAAATTATCAA
66 CATAATTACGAAAATACCCTTTCTCTTAGAATTATTTACTAAACAATTTCTTATTAAATTATCAA
* *
9241005 AATGCCCTTTCCATTATATAATAAGAAATTGACATGTGGCCAAATGGACT-TTATGCACTT
131 AATGCCCTTTCCATTATATAATAAGAAATTGACATATAGCCAAATGGACTATTATGCACTT
* * * * * * * * *
9241065 ATACCCTTTCCATTATATGATAAGTAATTGAC-ATTTGGCAAAATTTATTATTTTTCCCTCTTAC
1 ATACCCTTTCAATTATATGATAAGAAATTGACTATGTGACAAAATTGACTATTATGCCCTCATAC
*
9241129 CATAATTACG-AAATGCCCTTT-TCTTATG-ATTATTTAC-AAACAATATT-TTATTAAATTATC
66 CATAATTACGAAAATACCCTTTCTCTTA-GAATTATTTACTAAACAAT-TTCTTATTAAATTATC
* * * *
9241189 AAAATGCCCTTTTCATTATCTGATAAGAAATTGATATATAGCCAAATGGACTATTATGC
129 AAAATGCCCTTTCCATTATATAATAAGAAATTGACATATAGCCAAATGGACTATTATGC
9241248 CCTCATCCTA
Statistics
Matches: 158, Mismatches: 22, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
186 65 0.41
187 22 0.14
188 11 0.07
189 30 0.19
190 30 0.19
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.39
Consensus pattern (191 bp):
ATACCCTTTCAATTATATGATAAGAAATTGACTATGTGACAAAATTGACTATTATGCCCTCATAC
CATAATTACGAAAATACCCTTTCTCTTAGAATTATTTACTAAACAATTTCTTATTAAATTATCAA
AATGCCCTTTCCATTATATAATAAGAAATTGACATATAGCCAAATGGACTATTATGCACTT
Found at i:9241335 original size:129 final size:128
Alignment explanation
Indices: 9241068--9242012 Score: 717
Period size: 129 Copynumber: 7.4 Consensus size: 128
9241058 TGCACTTATA
* * * * ** * * * *
9241068 CCCTTTCCATTATATGATAAGTAATTGACATTTGGCAAAATTTATTATTTTTCCCTCTTACCATA
1 CCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCAT-CCATA
* * * * * * * ** *
9241133 ATTACG-AAATGCCCTTTTCTTATGATTATTTAC-AAACAATAT-TTTATTAAATTATCAAAATG
65 ATTATGAAAATACTCTTCTCTTATAATTATTTACTAAATAAT-TCCTTAGAAAATTACCAAAATG
* * * *
9241195 CCCTTTTCATTATCTGATAAGAAATTGATATATAGCCAAATGGACTATTATGCCCTCATCCTATA
1 CCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATCC-ATA
** * *
9241260 ATTACAAAAATACCTCTTTTCTTATAATTATATACTAAATAATTCC-TAGAAAATTACCAAAATG
65 ATTATGAAAATA-CTCTTCTCTTATAATTATTTACTAAATAATTCCTTAGAAAATTACCAAAATG
* * * * ** * * ** * *
9241324 TCATTTCCATTATATGATAAGAAATTGACATATGGTAAAATTGACAATTACACCCACATATCATA
1 CCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCAT-CCATA
* * * ** * **
9241389 ATTATGAAAATATCCCTTTTCTTATAATTATTTTCTAAATAATAACTTATG-AATTTATGAAAAT
65 ATTATGAAAATA-CTCTTCTCTTATAATTATTTACTAAATAATTCCTTA-GAAAATTACCAAAAT
*
9241453 A
128 G
* * * * * * * *
9241454 CACATTCCATTTTATGATAAGAAGTTGGCATGTTGTCAAATGGACTATTATGCCCT-ATACCATA
1 CCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCAT-CCATA
* * *
9241518 ATTATGAAAATACCTCTTCTCTTATAATTATTTGCTAAATAA-TCTCTTA-AGGAATTACTAAAA
65 ATTATGAAAATA-CTCTTCTCTTATAATTATTTACTAAATAATTC-CTTAGA-AAATTACCAAAA
9241581 TG
127 TG
** ** * * ** * *
9241583 TTCTTTTTGTTATGTGATAAGAAATTGAC-TGAGGTTTAAATGGACTATTATGCCCTTATATCAT
1 CCCTTTTCATTATATGATAAGAAATTGACATGTGG-CCAAATGGACTATTATGCCCTCAT-CCAT
* *
9241647 AATTACG---ATACTCTT-T-TT-TAACTATTTACTAAATAA-TCCTTTA-AGAAATTACCAAAA
64 AATTATGAAAATACTCTTCTCTTATAATTATTTACTAAATAATTCC-TTAGA-AAATTACCAAAA
9241704 TG
127 TG
* * *
9241706 CCCTTTTCATTTTATGATAAGAAGTTGACATGTGGCCAAATGGACTATTATGCCCTTATACCATA
1 CCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCAT-CCATA
* * * *
9241771 ATTGTGAGAATACT-TATCTCTTATAATTATTTACTATATAA-TCCATTATG-AAATTTCCAAAA
65 ATTATGAAAATACTCT-TCTCTTATAATTATTTACTAAATAATTCC-TTA-GAAAATTACCAAAA
*
9241833 TA
127 TG
* * * * * *
9241835 CCCCTTCCATTAAATGATAAGAAATTGAAATGTGGCCAAATGGACTATTATTCTCTAACA-CCAT
1 CCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCT--CATCCAT
* * *
9241899 AATTATGAAAATACTCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCCAAATG
64 AATTATGAAAATACTCTTCTCTTATAATTATTTACTAAATAATTCCTTAGAAAATTACCAAAATG
* * * *
9241964 TCCTTTTCATTATATGATAAAAAATTGGCATGTAGCCAAATGGACTATT
1 CCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATT
9242013 GATAGCTTCA
Statistics
Matches: 651, Mismatches: 138, Indels: 56
0.77 0.16 0.07
Matches are distributed among these distances:
122 1 0.00
123 88 0.14
124 6 0.01
125 2 0.00
126 13 0.02
127 58 0.09
128 9 0.01
129 397 0.61
130 75 0.12
131 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (128 bp):
CCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATCCATAA
TTATGAAAATACTCTTCTCTTATAATTATTTACTAAATAATTCCTTAGAAAATTACCAAAATG
Found at i:9241793 original size:252 final size:256
Alignment explanation
Indices: 9241127--9242012 Score: 715
Period size: 252 Copynumber: 3.5 Consensus size: 256
9241117 TTTCCCTCTT
* * * * * * *** * *
9241127 ACCATAATTACGAAATGCCCTTTTCTTATGATTATTTAC-AAACAATATTTTATTAAATTATCAA
1 ACCATAATTACG-AATACTCTTCTCTTATAACTATTTACTAAATAATCCCTTATAAAATTACCAA
* * * ** *
9241191 AATGCCCTTTTCATTATCTGATAAGAAATTGATATATAGCCAAATGGACTATTATGCCCTCAT-C
65 AATGCCCTTTTCATTTTATGATAAGAAGTTGGCATGTAGCCAAATGGACTATTATGCCCT-ATAC
** * *
9241255 CTATAATTACAAAAATACCTCTTTTCTTATAATTATATACTAAATAATTCC--T-AGAAAATTAC
129 C-ATAATTATGAAAATACCTCTTCTCTTATAATTATTTACTAAATAA-TCCATTAAG-AAATTAC
** ** * * ** * * **
9241317 CAAAATGTCATTTCCATTATATGATAAGAAATTGACAT-ATGGTAAAATTGACAATTACACCC-A
191 CAAAATACCCCTTCCATTAAATGATAAGAAATTGAAATGA-GGCCAAATGGACTATTATGCCCTA
*
9241380 CAT
255 -AC
* * * * * * ** * * **
9241383 ATCATAATTATGAAAATATCCCTTTTCTTATAATTATTTTCTAAATAATAACTTATGAATTTATG
1 ACCATAATTACG--AATA-CTCTTCTCTTATAACTATTTACTAAATAATCCCTTATAAAATTACC
* * * * * *
9241448 AAAATACACATTCCATTTTATGATAAGAAGTTGGCATGTTGTCAAATGGACTATTATGCCCTATA
63 AAAATGCCCTTTTCATTTTATGATAAGAAGTTGGCATGTAGCCAAATGGACTATTATGCCCTATA
* * *
9241513 CCATAATTATGAAAATACCTCTTCTCTTATAATTATTTGCTAAATAATCTC-TTAAGGAATTACT
128 CCATAATTATGAAAATACCTCTTCTCTTATAATTATTTACTAAATAATC-CATTAAGAAATTACC
*** * *** ** * ** *
9241577 AAAATGTTCTTTTTGTTATGTGATAAGAAATTG-ACTGAGGTTTAAATGGACTATTATGCCCTTA
192 AAAATACCCCTTCCATTAAATGATAAGAAATTGAAATGAGG-CCAAATGGACTATTATGCCCTAA
*
9241641 T
256 C
* *
9241642 ATCATAATTACG-ATACTCTT-T-TT-TAACTATTTACTAAATAATCCTTTA-AGAAATTACCAA
1 ACCATAATTACGAATACTCTTCTCTTATAACTATTTACTAAATAATCCCTTATA-AAATTACCAA
* *
9241702 AATGCCCTTTTCATTTTATGATAAGAAGTTGACATGTGGCCAAATGGACTATTATGCCCTTATAC
65 AATGCCCTTTTCATTTTATGATAAGAAGTTGGCATGTAGCCAAATGGACTATTATGCCC-TATAC
* * * * *
9241767 CATAATTGTGAGAATA-CT-TATCTCTTATAATTATTTACTATATAATCCATTATGAAATTTCCA
129 CATAATTATGAAAATACCTCT-TCTCTTATAATTATTTACTAAATAATCCATTAAGAAATTACCA
* * *
9241830 AAATACCCCTTCCATTAAATGATAAGAAATTGAAATGTGGCCAAATGGACTATTATTCTCTAAC
193 AAATACCCCTTCCATTAAATGATAAGAAATTGAAATGAGGCCAAATGGACTATTATGCCCTAAC
* * *
9241894 ACCATAATTATGAAAATACTCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCC
1 ACCATAATTACG--AATACTCTTCTCTTATAACTATTTACTAAATAATCCCTTATAAAATTACCA
* * * *
9241959 AAATGTCCTTTTCATTATATGATAAAAAATTGGCATGTAGCCAAATGGACTATT
64 AAATGCCCTTTTCATTTTATGATAAGAAGTTGGCATGTAGCCAAATGGACTATT
9242013 GATAGCTTCA
Statistics
Matches: 510, Mismatches: 98, Indels: 42
0.78 0.15 0.06
Matches are distributed among these distances:
251 2 0.00
252 167 0.33
253 26 0.05
254 1 0.00
255 12 0.02
256 14 0.03
257 8 0.02
258 145 0.28
259 133 0.26
260 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (256 bp):
ACCATAATTACGAATACTCTTCTCTTATAACTATTTACTAAATAATCCCTTATAAAATTACCAAA
ATGCCCTTTTCATTTTATGATAAGAAGTTGGCATGTAGCCAAATGGACTATTATGCCCTATACCA
TAATTATGAAAATACCTCTTCTCTTATAATTATTTACTAAATAATCCATTAAGAAATTACCAAAA
TACCCCTTCCATTAAATGATAAGAAATTGAAATGAGGCCAAATGGACTATTATGCCCTAAC
Found at i:9242007 original size:381 final size:383
Alignment explanation
Indices: 9241127--9242012 Score: 913
Period size: 381 Copynumber: 2.3 Consensus size: 383
9241117 TTTCCCTCTT
* * * * * * * * * *
9241127 ACCATAATTACG-AAATGCCCTTTTCTTATGATTATTTAC-AAACAATATTTTATTAAATTATCA
1 ACCATAATTATGAAAATACTCTTCTCTTATAATTATTTACTAAATAATCTCTTATAAAATTACCA
* * * *
9241190 AAATGCCCTTTTCATTATCTGATAAGAAATTGATATATAGCCAAATGGACTATTATGCCCTCATC
66 AAATGTCCTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTCATC
*
9241255 CTATAATTACAAAAATACCTCTTTTCTTATAATTATATACTAAATAATTCCTAGAAAATTACCAA
131 CTATAATTAC--AAATACCTCTTTTCTTATAACTATATACTAAATAATTCCTAGAAAATTACCAA
* * * *
9241320 AATGTCATTTCCATTATATGATAAGAAATTGACATATGGTAAAATTGACAATTACACCCACATAT
194 AATGCCATTTCCATTATATGATAAGAAATTGACATATGGCAAAATGGACAATTACACCCACATAC
* **
9241385 CATAATTATGAAAATATCCCTTTTCTTATAATTATTTTCTAAATAATAACTTATGAATTTATGAA
259 CATAATTATGAAAATA--CCTTTTCTTATAATTATTTACTAAATAATAACTTATGAATTTACCAA
** * ** * * *
9241450 AATACACATTCCATTTTATGATAAGAAGTTGGCATGTTGTCAAATGGACTATTATGCCCTAT
322 AATACACATTCCATTAAATGATAAGAAATTGAAATGTGGCCAAATGGACTATTATGCCCTAC
* *
9241512 ACCATAATTATGAAAATACCTCTTCTCTTATAATTATTTGCTAAATAATCTCTTA-AGGAATTAC
1 ACCATAATTATGAAAATA-CTCTTCTCTTATAATTATTTACTAAATAATCTCTTATA-AAATTAC
* * ** * **
9241576 TAAAATGTTCTTTTTGTTATGTGATAAGAAATTGAC-TG-AGGTTTAAATGGACTATTATGCCCT
64 CAAAATGTCCTTTTCATTATATGATAAGAAATTGACATGTA-G-CCAAATGGACTATTATGCCCT
* * * *
9241639 TAT-ATCATAATTAC-GATA-CTC-TTT-TT-TAACTATTTACTAAATAA-TCCTTTA-AGAAAT
127 CATCCT-ATAATTACAAATACCTCTTTTCTTATAACTATATACTAAATAATTCC--TAGA-AAAT
* * * * * * * **
9241696 TACCAAAATGCCCTTTTCATTTTATGATAAGAAGTTGACATGTGGCCAAATGGACTATTATGCCC
188 TACCAAAATGCCATTTCCATTATATGATAAGAAATTGACATATGGCAAAATGGACAATTACACCC
** * * * *
9241761 TTATACCATAATTGTGAGAATA-CTTATCTCTTATAATTATTTACTATATAAT-CCATTATGAAA
253 ACATACCATAATTATGAAAATACCTT-T-TCTTATAATTATTTACTAAATAATAAC-TTATG-AA
* * *
9241824 TTT-CCAAAATACCCCTTCCATTAAATGATAAGAAATTGAAATGTGGCCAAATGGACTATTATTC
314 TTTACCAAAATACACATTCCATTAAATGATAAGAAATTGAAATGTGGCCAAATGGACTATTATGC
*
9241888 TCTAAC
379 CCT-AC
* *
9241894 ACCATAATTATGAAAATACTCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCC
1 ACCATAATTATGAAAATACTCTTCTCTTATAATTATTTACTAAATAATCTCTTATAAAATTACCA
* *
9241959 AAATGTCCTTTTCATTATATGATAAAAAATTGGCATGTAGCCAAATGGACTATT
66 AAATGTCCTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATT
9242013 GATAGCTTCA
Statistics
Matches: 409, Mismatches: 74, Indels: 40
0.78 0.14 0.08
Matches are distributed among these distances:
379 3 0.01
380 5 0.01
381 175 0.43
382 106 0.26
383 4 0.01
384 3 0.01
385 14 0.03
386 5 0.01
387 21 0.05
388 73 0.18
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (383 bp):
ACCATAATTATGAAAATACTCTTCTCTTATAATTATTTACTAAATAATCTCTTATAAAATTACCA
AAATGTCCTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTCATC
CTATAATTACAAATACCTCTTTTCTTATAACTATATACTAAATAATTCCTAGAAAATTACCAAAA
TGCCATTTCCATTATATGATAAGAAATTGACATATGGCAAAATGGACAATTACACCCACATACCA
TAATTATGAAAATACCTTTTCTTATAATTATTTACTAAATAATAACTTATGAATTTACCAAAATA
CACATTCCATTAAATGATAAGAAATTGAAATGTGGCCAAATGGACTATTATGCCCTAC
Found at i:9243638 original size:12 final size:11
Alignment explanation
Indices: 9243620--9243660 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
9243610 AATCTAAACC
9243620 TTTTATTTATT
1 TTTTATTTATT
9243631 TATTTATTTATT
1 T-TTTATTTATT
*
9243643 TTTTACTTTTTT
1 TTTTA-TTTATT
9243655 TTTTAT
1 TTTTAT
9243661 GTTTTCTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 6 0.22
12 21 0.78
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTATTTATT
Found at i:9244491 original size:13 final size:13
Alignment explanation
Indices: 9244473--9244498 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9244463 AAAACATTAG
9244473 GCTTTTGTTAAAA
1 GCTTTTGTTAAAA
9244486 GCTTTTGTTAAAA
1 GCTTTTGTTAAAA
9244499 AATAAACGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
GCTTTTGTTAAAA
Found at i:9244885 original size:20 final size:20
Alignment explanation
Indices: 9244846--9244886 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
9244836 AAAAAAGATG
*
9244846 AAAAATATGAAACTAGTAGA
1 AAAAATATGAAACTACTAGA
9244866 AAAAATATGAAA-TAACTAGA
1 AAAAATATGAAACT-ACTAGA
9244886 A
1 A
9244887 GCAAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.63, C:0.05, G:0.12, T:0.20
Consensus pattern (20 bp):
AAAAATATGAAACTACTAGA
Found at i:9246110 original size:3 final size:3
Alignment explanation
Indices: 9246074--9246138 Score: 71
Period size: 3 Copynumber: 21.7 Consensus size: 3
9246064 AATTATTAAG
* * *
9246074 TAA TAA AAA TAA GAA TAA TAA -AA GGTAA -AT TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA --TAA TAA TAA TAA TAA TAA TAA
9246119 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
9246139 TCTTATTGGA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
2 3 0.06
3 47 0.90
5 2 0.04
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:9246340 original size:19 final size:19
Alignment explanation
Indices: 9246318--9246356 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
9246308 AACCCAAAAA
9246318 CTAAACCCTAAATGAAACC
1 CTAAACCCTAAATGAAACC
*
9246337 CTAAACCCTAAGTGAAACC
1 CTAAACCCTAAATGAAACC
9246356 C
1 C
9246357 CCGAGTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.33, G:0.08, T:0.15
Consensus pattern (19 bp):
CTAAACCCTAAATGAAACC
Found at i:9248602 original size:16 final size:16
Alignment explanation
Indices: 9248566--9248624 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
9248556 GAAAAAAATG
9248566 AAAGAAAATGAAAAAA
1 AAAGAAAATGAAAAAA
9248582 AAAGAAAA-GAAAGAAA
1 AAAGAAAATGAAA-AAA
*
9248598 GAAGAACAA--AAAAAA
1 AAAGAA-AATGAAAAAA
9248613 AAATG-AAATGAA
1 AAA-GAAAATGAA
9248625 TGGTTAGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 2 0.06
15 10 0.28
16 22 0.61
17 2 0.06
ACGTcount: A:0.78, C:0.02, G:0.15, T:0.05
Consensus pattern (16 bp):
AAAGAAAATGAAAAAA
Found at i:9249459 original size:29 final size:29
Alignment explanation
Indices: 9249417--9249480 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
9249407 ATTATCGAGA
* * *
9249417 TTAAGCCCAGTTTAGTTGGCACCCATGTT
1 TTAAGCCCAATTTAATTGGCACCCAGGTT
*
9249446 TTAAGCCCAATTTAATTGGCACCTAGGTT
1 TTAAGCCCAATTTAATTGGCACCCAGGTT
9249475 TTAAGC
1 TTAAGC
9249481 TCAGTACTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (29 bp):
TTAAGCCCAATTTAATTGGCACCCAGGTT
Found at i:9249629 original size:32 final size:32
Alignment explanation
Indices: 9249536--9249890 Score: 195
Period size: 32 Copynumber: 11.3 Consensus size: 32
9249526 TAAGCCCAAT
* * *
9249536 TTAGTTGGCATCC-ATAAAAATTTGAGCCTAGT
1 TTAGTTGGCA-CCTATGAAAATTTAAGCCTAGA
**
9249568 TTAGTTGGCACCTA-G--GCTTTAAGCCTAGA
1 TTAGTTGGCACCTATGAAAATTTAAGCCTAGA
* * *
9249597 TTATTTGGCACTTATGAAAATTTAAGCTTAGA
1 TTAGTTGGCACCTATGAAAATTTAAGCCTAGA
** * *
9249629 TTAGTTGGCACCCGTGAAAATTTAA-TCTAGT
1 TTAGTTGGCACCTATGAAAATTTAAGCCTAGA
**
9249660 TTAGTTGGCACCTA-G--GCTTTAAGCCTAGA
1 TTAGTTGGCACCTATGAAAATTTAAGCCTAGA
* * * *
9249689 TTATTTGGCACTTATGAAAATTTAAGCTTAGC
1 TTAGTTGGCACCTATGAAAATTTAAGCCTAGA
** * *
9249721 TTAGTTGGCACCCGTGAAAATTTAA-TCTAGT
1 TTAGTTGGCACCTATGAAAATTTAAGCCTAGA
* * * * *
9249752 TTTGCTGGCACTTGATAAAGAATTT-AGTCTA-A
1 TTAGTTGGCACCT-ATGAA-AATTTAAGCCTAGA
* * *
9249784 TTTAGCTAG-ACCTAATG-AAATTTAAGCCTAGT
1 -TTAGTTGGCACCT-ATGAAAATTTAAGCCTAGA
** * * *
9249816 TTAACTGGCATCTAATG-AAATTTAGGCCCA-A
1 TTAGTTGGCACCT-ATGAAAATTTAAGCCTAGA
9249847 CTTAGTTGGCAACC-ATGAAAATTTAAGCCTA-A
1 -TTAGTTGGC-ACCTATGAAAATTTAAGCCTAGA
9249879 TTTAGTTGGCAC
1 -TTAGTTGGCAC
9249891 ACAAGTTCTA
Statistics
Matches: 243, Mismatches: 62, Indels: 37
0.71 0.18 0.11
Matches are distributed among these distances:
28 5 0.02
29 38 0.16
30 8 0.03
31 46 0.19
32 129 0.53
33 17 0.07
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (32 bp):
TTAGTTGGCACCTATGAAAATTTAAGCCTAGA
Found at i:9249666 original size:92 final size:92
Alignment explanation
Indices: 9249536--9249762 Score: 373
Period size: 92 Copynumber: 2.5 Consensus size: 92
9249526 TAAGCCCAAT
* * * **
9249536 TTAGTTGGCATCCATAAAAATTTGAGCCTAGTTTAGTTGGCACCTAGGCTTTAAGCCTAGATTAT
1 TTAGTTGGCACCCGTGAAAATTT-AATCTAGTTTAGTTGGCACCTAGGCTTTAAGCCTAGATTAT
9249601 TTGGCACTTATGAAAATTTAAGCTTAGA
65 TTGGCACTTATGAAAATTTAAGCTTAGA
9249629 TTAGTTGGCACCCGTGAAAATTTAATCTAGTTTAGTTGGCACCTAGGCTTTAAGCCTAGATTATT
1 TTAGTTGGCACCCGTGAAAATTTAATCTAGTTTAGTTGGCACCTAGGCTTTAAGCCTAGATTATT
*
9249694 TGGCACTTATGAAAATTTAAGCTTAGC
66 TGGCACTTATGAAAATTTAAGCTTAGA
* *
9249721 TTAGTTGGCACCCGTGAAAATTTAATCTAGTTTTGCTGGCAC
1 TTAGTTGGCACCCGTGAAAATTTAATCTAGTTTAGTTGGCAC
9249763 TTGATAAAGA
Statistics
Matches: 126, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
92 106 0.84
93 20 0.16
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (92 bp):
TTAGTTGGCACCCGTGAAAATTTAATCTAGTTTAGTTGGCACCTAGGCTTTAAGCCTAGATTATT
TGGCACTTATGAAAATTTAAGCTTAGA
Found at i:9249689 original size:60 final size:61
Alignment explanation
Indices: 9249617--9249732 Score: 162
Period size: 60 Copynumber: 1.9 Consensus size: 61
9249607 CTTATGAAAA
* * * *
9249617 TTTAAGCTTAGATTAGTTGGCACCCGTGAAAATTTAATC-TAGTTTAGTTGGCACCTAGGC
1 TTTAAGCCTAGATTAGTTGGCACCCATGAAAATTTAAGCTTAGCTTAGTTGGCACCTAGGC
* **
9249677 TTTAAGCCTAGATTATTTGGCACTTATGAAAATTTAAGCTTAGCTTAGTTGGCACC
1 TTTAAGCCTAGATTAGTTGGCACCCATGAAAATTTAAGCTTAGCTTAGTTGGCACC
9249733 CGTGAAAATT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
60 33 0.69
61 15 0.31
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (61 bp):
TTTAAGCCTAGATTAGTTGGCACCCATGAAAATTTAAGCTTAGCTTAGTTGGCACCTAGGC
Found at i:9249928 original size:22 final size:23
Alignment explanation
Indices: 9249900--9249980 Score: 71
Period size: 22 Copynumber: 3.7 Consensus size: 23
9249890 CACAAGTTCT
*
9249900 AAGCCCAGTCTTA-CTGGCATAC
1 AAGCCCAGTATTAGCTGGCATAC
* *
9249922 AAGCCCAG-ATTAGCTGGCCTAT
1 AAGCCCAGTATTAGCTGGCATAC
** * *
9249944 AAGCCCAGT-TTAGCTTACACAT
1 AAGCCCAGTATTAGCTGGCATAC
9249966 AAGCCCAG-ATTAGCT
1 AAGCCCAGTATTAGCT
9249981 AGCCCAGATT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
21 3 0.06
22 46 0.94
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (23 bp):
AAGCCCAGTATTAGCTGGCATAC
Found at i:9249986 original size:14 final size:14
Alignment explanation
Indices: 9249967--9249997 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
9249957 CTTACACATA
9249967 AGCCCAGATTAGCT
1 AGCCCAGATTAGCT
9249981 AGCCCAGATTAGCT
1 AGCCCAGATTAGCT
9249995 AGC
1 AGC
9249998 TATAAACCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (14 bp):
AGCCCAGATTAGCT
Found at i:9250026 original size:57 final size:58
Alignment explanation
Indices: 9249923--9250038 Score: 155
Period size: 57 Copynumber: 2.0 Consensus size: 58
9249913 CTGGCATACA
* * *
9249923 AGCCCAGATTAGCTGGCCTATAAGCCCAGTTTAGCTTACACATAAGCCCAGATTAGCT
1 AGCCCAGATTAGCTAGCCTATAAACCCAGTTTAGCTTACACATAAGCCCAAATTAGCT
* **
9249981 AGCCCAGATTAGCTAG-CTATAAACCTAGTTTAG-TTGACATGTAAGCCCAAATTAGCT
1 AGCCCAGATTAGCTAGCCTATAAACCCAGTTTAGCTT-ACACATAAGCCCAAATTAGCT
9250038 A
1 A
9250039 AAAAGCATAC
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
56 2 0.04
57 34 0.67
58 15 0.29
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (58 bp):
AGCCCAGATTAGCTAGCCTATAAACCCAGTTTAGCTTACACATAAGCCCAAATTAGCT
Found at i:9250302 original size:32 final size:32
Alignment explanation
Indices: 9250259--9250343 Score: 79
Period size: 32 Copynumber: 2.7 Consensus size: 32
9250249 TTGGCACTAG
*
9250259 TGAAAGTTTAAGCT-TCGTTTAGGTGGTACC-CAA
1 TGAAA-TTTAAGCTCTAGTTTAGGTGG--CCTCAA
*
9250292 TGAAATTTAAG-TCTAGTTTAGTTGGCCTCAA
1 TGAAATTTAAGCTCTAGTTTAGGTGGCCTCAA
*
9250323 TGAAAATTTAAGC-CTAATTTA
1 TG-AAATTTAAGCTCTAGTTTA
9250344 CCTGTCTATA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
30 2 0.04
31 6 0.13
32 32 0.71
33 5 0.11
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (32 bp):
TGAAATTTAAGCTCTAGTTTAGGTGGCCTCAA
Found at i:9250549 original size:31 final size:31
Alignment explanation
Indices: 9250513--9250636 Score: 133
Period size: 31 Copynumber: 4.0 Consensus size: 31
9250503 TTTGACCTGC
* * *
9250513 AGTTCAATCTTGATTACTTCATTCAACTTGT
1 AGTTCAATCTCGATCACCTCATTCAACTTGT
* * *
9250544 GGTTCAGTCTCGATCACCTTATTCAACTTGT
1 AGTTCAATCTCGATCACCTCATTCAACTTGT
* *
9250575 AGTTCAATCTCGGTCACCTCATTTAACTTGT
1 AGTTCAATCTCGATCACCTCATTCAACTTGT
* * *
9250606 AATTCAGTC-CTTATCACCTCATTCAACTTGT
1 AGTTCAATCTC-GATCACCTCATTCAACTTGT
9250637 GATTTAGTCT
Statistics
Matches: 76, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
30 1 0.01
31 75 0.99
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.40
Consensus pattern (31 bp):
AGTTCAATCTCGATCACCTCATTCAACTTGT
Found at i:9250579 original size:62 final size:62
Alignment explanation
Indices: 9250464--9250636 Score: 168
Period size: 62 Copynumber: 2.8 Consensus size: 62
9250454 TTAGTCCCTG
* * * * * ** * * *
9250464 TCACCTCATTCAACCTATGGTTCAGTCTCGATGATCATATTTGACCTGCAGTTCAATCTTGA
1 TCACCTCATTCAACTTGTGGTTCAGTCTCGATCACCTTATTCAACTTGTAGTTCAATCTCGA
* * *
9250526 TTACTTCATTCAACTTGTGGTTCAGTCTCGATCACCTTATTCAACTTGTAGTTCAATCTCGG
1 TCACCTCATTCAACTTGTGGTTCAGTCTCGATCACCTTATTCAACTTGTAGTTCAATCTCGA
* ** * *
9250588 TCACCTCATTTAACTTGTAATTCAGTC-CTTATCACCTCATTCAACTTGT
1 TCACCTCATTCAACTTGTGGTTCAGTCTC-GATCACCTTATTCAACTTGT
9250637 GATTTAGTCT
Statistics
Matches: 90, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
61 1 0.01
62 89 0.99
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (62 bp):
TCACCTCATTCAACTTGTGGTTCAGTCTCGATCACCTTATTCAACTTGTAGTTCAATCTCGA
Found at i:9250654 original size:31 final size:31
Alignment explanation
Indices: 9250531--9250655 Score: 130
Period size: 31 Copynumber: 4.0 Consensus size: 31
9250521 CTTGATTACT
*
9250531 TCATTCAACTTGTGGTTCAGTCTC-GATCACC
1 TCATTCAACTTGTGATTCAGTCTCAG-TCACC
* * *
9250562 TTATTCAACTTGT-AGTTCAATCTCGGTCACC
1 TCATTCAACTTGTGA-TTCAGTCTCAGTCACC
* * *
9250593 TCATTTAACTTGTAATTCAGTCCTTA-TCACC
1 TCATTCAACTTGTGATTCAGT-CTCAGTCACC
*
9250624 TCATTCAACTTGTGATTTAGTCTCAGTCACC
1 TCATTCAACTTGTGATTCAGTCTCAGTCACC
9250655 T
1 T
9250656 TTATTTTTTG
Statistics
Matches: 77, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
30 3 0.04
31 70 0.91
32 4 0.05
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.39
Consensus pattern (31 bp):
TCATTCAACTTGTGATTCAGTCTCAGTCACC
Found at i:9250742 original size:7 final size:6
Alignment explanation
Indices: 9250721--9250822 Score: 52
Period size: 6 Copynumber: 16.7 Consensus size: 6
9250711 CCAAATAACC
* *
9250721 AAACAAA AAACCAA ATAACAAA AAATAA AAACACA AAAC-A AAACAA ATAAAATA
1 AAAC-AA AAA-CAA A-AAC-AA AAACAA AAACA-A AAACAA AAACAA A-AACA-A
** * *
9250775 AAATGA AAATAA AAAC-A AAACAA AAAC-A AAA-TA AAAC-A AAACAA
1 AAACAA AAACAA AAACAA AAACAA AAACAA AAACAA AAACAA AAACAA
9250819 AAAC
1 AAAC
9250823 TTCTTTTTAG
Statistics
Matches: 77, Mismatches: 7, Indels: 23
0.72 0.07 0.21
Matches are distributed among these distances:
5 23 0.30
6 27 0.35
7 19 0.25
8 8 0.10
ACGTcount: A:0.78, C:0.14, G:0.01, T:0.07
Consensus pattern (6 bp):
AAACAA
Found at i:9250750 original size:20 final size:19
Alignment explanation
Indices: 9250701--9250763 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 19
9250691 TTAAAAAGTA
9250701 AAAAAAAAAACCAAATAACC
1 AAAAAAAAAACCAAATAA-C
*
9250721 AAACAAAAAACCAAATAAC
1 AAAAAAAAAACCAAATAAC
*
9250740 AAAAAATAAAAACACAA-AAC
1 AAAAAA-AAAACCA-AATAAC
9250760 AAAA
1 AAAA
9250764 CAAATAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 6 0.16
20 30 0.79
21 2 0.05
ACGTcount: A:0.78, C:0.17, G:0.00, T:0.05
Consensus pattern (19 bp):
AAAAAAAAAACCAAATAAC
Found at i:9250761 original size:5 final size:5
Alignment explanation
Indices: 9250753--9250820 Score: 57
Period size: 5 Copynumber: 13.2 Consensus size: 5
9250743 AAATAAAAAC
* * * *
9250753 ACAAA ACAAA AC-AA ATAAA ATAAA ATGAAA ATAAAA ACAAA ACAAAA
1 ACAAA ACAAA ACAAA ACAAA ACAAA A-CAAA A-CAAA ACAAA AC-AAA
*
9250800 ACAAA ATAAA ACAAA ACAAA A
1 ACAAA ACAAA ACAAA ACAAA A
9250821 ACTTCTTTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
4 3 0.06
5 37 0.69
6 14 0.26
ACGTcount: A:0.79, C:0.12, G:0.01, T:0.07
Consensus pattern (5 bp):
ACAAA
Found at i:9250778 original size:32 final size:31
Alignment explanation
Indices: 9250727--9250822 Score: 106
Period size: 32 Copynumber: 3.0 Consensus size: 31
9250717 AACCAAACAA
9250727 AAAACCAAATAACAAAAAATAAAAACACAAAAC
1 AAAA-CAAATAACAAAAAATAAAAACA-AAAAC
* *
9250760 AAAACAAATAA-AATAAAATGAAAATAAAAAC
1 AAAACAAATAACAA-AAAATAAAAACAAAAAC
*
9250791 AAAACAAA-AACAAAATAAAACAAAACAAAAAC
1 AAAACAAATAACAAAA-AATA-AAAACAAAAAC
9250823 TTCTTTTTAG
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
30 4 0.07
31 19 0.35
32 27 0.50
33 4 0.07
ACGTcount: A:0.78, C:0.14, G:0.01, T:0.07
Consensus pattern (31 bp):
AAAACAAATAACAAAAAATAAAAACAAAAAC
Found at i:9250787 original size:38 final size:38
Alignment explanation
Indices: 9250742--9250815 Score: 107
Period size: 38 Copynumber: 1.9 Consensus size: 38
9250732 CAAATAACAA
*
9250742 AAAATAAAAACACAAA-ACAAAAC-AAATAAAATAAAATG
1 AAAATAAAAACA-AAACA-AAAACAAAATAAAACAAAATG
9250780 AAAATAAAAACAAAACAAAAACAAAATAAAACAAAA
1 AAAATAAAAACAAAACAAAAACAAAATAAAACAAAA
9250816 CAAAAACTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
37 8 0.24
38 25 0.76
ACGTcount: A:0.80, C:0.11, G:0.01, T:0.08
Consensus pattern (38 bp):
AAAATAAAAACAAAACAAAAACAAAATAAAACAAAATG
Found at i:9250821 original size:11 final size:11
Alignment explanation
Indices: 9250748--9250822 Score: 66
Period size: 11 Copynumber: 7.0 Consensus size: 11
9250738 ACAAAAAATA
9250748 AAAACACAAAAC
1 AAAACA-AAAAC
*
9250760 AAAAC--AAAT
1 AAAACAAAAAC
* **
9250769 AAAATAAAATG
1 AAAACAAAAAC
*
9250780 AAAATAAAAAC
1 AAAACAAAAAC
9250791 AAAACAAAAAC
1 AAAACAAAAAC
*
9250802 AAAA-TAAAAC
1 AAAACAAAAAC
9250812 AAAACAAAAAC
1 AAAACAAAAAC
9250823 TTCTTTTTAG
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
9 7 0.14
10 9 0.18
11 30 0.59
12 5 0.10
ACGTcount: A:0.79, C:0.13, G:0.01, T:0.07
Consensus pattern (11 bp):
AAAACAAAAAC
Found at i:9251759 original size:20 final size:21
Alignment explanation
Indices: 9251724--9251779 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
9251714 GGGCAGTAGT
9251724 AAAAAACT-AAAA-AGCAAA-
1 AAAAAACTAAAAAGAGCAAAC
9251742 AATAAAA-TAAAAAGAGCAAAC
1 AA-AAAACTAAAAAGAGCAAAC
9251763 AAAAAACTAAAAGAGAG
1 AAAAAACTAAAA-AGAG
9251780 GAGCATTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
18 3 0.09
19 8 0.25
20 10 0.31
21 7 0.22
22 4 0.12
ACGTcount: A:0.73, C:0.09, G:0.11, T:0.07
Consensus pattern (21 bp):
AAAAAACTAAAAAGAGCAAAC
Found at i:9253275 original size:12 final size:11
Alignment explanation
Indices: 9253250--9253285 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
9253240 ATGATAAAAT
9253250 TAAATAAAGAA
1 TAAATAAAGAA
9253261 TAAATAAATGAA
1 TAAATAAA-GAA
9253273 TAAATAAA-AA
1 TAAATAAAGAA
9253283 TAA
1 TAA
9253286 GATTTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 5 0.21
11 8 0.33
12 11 0.46
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (11 bp):
TAAATAAAGAA
Found at i:9258225 original size:16 final size:15
Alignment explanation
Indices: 9258206--9258240 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
9258196 CAAGCTTGGC
9258206 TTTTTCTTTTTCCAT
1 TTTTTCTTTTTCCAT
* *
9258221 TTTTTCATTTTCCCT
1 TTTTTCTTTTTCCAT
9258236 TTTTT
1 TTTTT
9258241 TCTAAGCTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTTCTTTTTCCAT
Found at i:9263692 original size:86 final size:86
Alignment explanation
Indices: 9263583--9263750 Score: 264
Period size: 86 Copynumber: 2.0 Consensus size: 86
9263573 GGCAAACAAA
* *
9263583 TTTAAATTAAGAAATGGGCTCCTCTATACAGAGACTAAACAACTTTAGATTAGGAAATGGACTCC
1 TTTAAATTAAGAAATGGGCTCCTCTATACAGAGACTAAAAAACTTTAAATTAGGAAATGGACTCC
9263648 TCTAAATAGAGGCTAAATGAC
66 TCTAAATAGAGGCTAAATGAC
* * * * *
9263669 TTTAAATTAGGAAATGGGTTCCTCTATACATAGGCTAAAAAACTTTAAATTAGGAAATGGGCTCC
1 TTTAAATTAAGAAATGGGCTCCTCTATACAGAGACTAAAAAACTTTAAATTAGGAAATGGACTCC
*
9263734 TTTAAATAGAGGCTAAA
66 TCTAAATAGAGGCTAAA
9263751 AGAATCCTCT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 74 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (86 bp):
TTTAAATTAAGAAATGGGCTCCTCTATACAGAGACTAAAAAACTTTAAATTAGGAAATGGACTCC
TCTAAATAGAGGCTAAATGAC
Found at i:9263751 original size:43 final size:43
Alignment explanation
Indices: 9263563--9263751 Score: 220
Period size: 43 Copynumber: 4.4 Consensus size: 43
9263553 ACTAAACTCT
* *
9263563 TCTATATAGAGGC-AAACAAA-TTTAAATTAAGAAATGGGCTCC
1 TCTAAATAGAGGCTAAA-AAACTTTAAATTAGGAAATGGGCTCC
* * * * * *
9263605 TCTATACAGAGACTAAACAACTTTAGATTAGGAAATGGACTCC
1 TCTAAATAGAGGCTAAAAAACTTTAAATTAGGAAATGGGCTCC
** *
9263648 TCTAAATAGAGGCTAAATGACTTTAAATTAGGAAATGGGTTCC
1 TCTAAATAGAGGCTAAAAAACTTTAAATTAGGAAATGGGCTCC
* * *
9263691 TCTATACATAGGCTAAAAAACTTTAAATTAGGAAATGGGCTCC
1 TCTAAATAGAGGCTAAAAAACTTTAAATTAGGAAATGGGCTCC
*
9263734 TTTAAATAGAGGCTAAAA
1 TCTAAATAGAGGCTAAAA
9263752 GAATCCTCTA
Statistics
Matches: 121, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
42 13 0.11
43 108 0.89
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (43 bp):
TCTAAATAGAGGCTAAAAAACTTTAAATTAGGAAATGGGCTCC
Found at i:9275385 original size:4 final size:4
Alignment explanation
Indices: 9275355--9275396 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
9275345 AAAATGTATT
* *
9275355 TAAA -AAA T-AA TAGA TAAA TAAA CAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
9275397 ATAGTTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
3 6 0.19
4 26 0.81
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (4 bp):
TAAA
Found at i:9280957 original size:20 final size:22
Alignment explanation
Indices: 9280920--9280959 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
9280910 GCCAATTTTT
9280920 CTTTCTTTTCCTAATTTATTTA
1 CTTTCTTTTCCTAATTTATTTA
*
9280942 CTTT-TTTTCC-ACTTTATT
1 CTTTCTTTTCCTAATTTATT
9280960 GCTTTTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 6 0.35
22 4 0.24
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.65
Consensus pattern (22 bp):
CTTTCTTTTCCTAATTTATTTA
Found at i:9282091 original size:130 final size:129
Alignment explanation
Indices: 9281639--9282700 Score: 761
Period size: 130 Copynumber: 8.2 Consensus size: 129
9281629 CAAGCCACAT
* * * * * *
9281639 ATTATTTACTAAAAAATATCTTATGAAATTA-TCAAAATA-CTTCTTCCATTATATGGTAAGAAA
1 ATTATTTACTAAATAAT-CCCTATGAAATTACT-AAAATACCTT-TTTCAATATATGATAAGAAA
* * * * * ** *
9281702 TTGACATGTGGCCAAATGGGCTATTATTCTATCATATCATAATTATGAAAATA-CCATTGTCTTA
63 TTGACATGTAGTCAAATTGACTATTATGCCCTCATATCATAATTATGAAAATACCCATTCTCTTA
9281766 TA
128 TA
* * * * *
9281768 ATTAGTCACTAAATAATCTCATATGAAATTA-TCAAAATACC-TTTTCCATCATATTATAAGAAA
1 ATTATTTACTAAATAATC-CCTATGAAATTACT-AAAATACCTTTTTCAAT-ATATGATAAGAAA
* * * * ** * *
9281831 TCGATAAGTAG-CTAAATAGACTATTACACCCTTATTTCATAATTATGAAAATACCCATTCTCTT
63 TTGACATGTAGTC-AAATTGACTATTATGCCCTCATATCATAATTATGAAAATACCCATTCTCTT
9281895 ATA
127 ATA
* * * * * * *
9281898 ATTTTTTATTAAATAATCCCTATAAAAATTACCAAAAT-GCTTTTTCCATTAAAAT-ATAAGAAA
1 ATTATTTACTAAATAATCCCTAT-GAAATTACTAAAATACCTTTTT-CAAT-ATATGATAAGAAA
* ** * ** * *
9281961 TTGACACGTAGTCAAATTGAAAATCACACCCTCATATCATAATTATAAAAATACCCATTCTTTTA
63 TTGACATGTAGTCAAATTGACTATTATGCCCTCATATCATAATTATGAAAATACCCATTCTCTTA
9282026 TA
128 TA
* * * *
9282028 ATTATTTACTAAATAATCCCCTATAAAATT-CAAAAAATACATTTTTCAATATATGATAGGAAAT
1 ATTATTTACTAAATAAT-CCCTATGAAATTAC-TAAAATACCTTTTTCAATATATGATAAGAAAT
* * * ** * *
9282092 T-ACCATGTGGTCAAATGGACCATTATGCGTTCA-AGCCATAATTATGAAAATACCCCTTCTCTT
64 TGA-CATGTAGTCAAATTGACTATTATGCCCTCATA-TCATAATTATGAAAATACCCATTCTCTT
9282155 ATA
127 ATA
** * * *
9282158 ATTAGCTACTAAATAATCCCTCATGAAATTACTAAATTACCCTTTTT-ATTATATGAAAAGAAAT
1 ATTATTTACTAAATAATCCCT-ATGAAATTACTAAAATA-CCTTTTTCAATATATGATAAGAAAT
* * * * * *
9282222 TGACATGT-GCCCAAATTGACAATTATGCCTTAATATCATAATTACGAAAAAACCC-TTCTCTTA
64 TGACATGTAG-TCAAATTGACTATTATGCCCTCATATCATAATTATGAAAATACCCATTCTCTTA
9282285 TA
128 TA
* * * * * *
9282287 ATTATTTATTAAA-AACCCCTATGAAATTATTAAAATGCCTTTTCCATTATATGATAAGAAATTG
1 ATTATTTACTAAATAATCCCTATGAAATTACTAAAATACCTTTTTCAATATATGATAAGAAATTG
* * * * * * * *
9282351 ATATGTGGCCAAA-TGAACTATTATGCCATCAAATCATAATTA-CAAACATACCTC-TTCCCTTG
66 ACATGTAGTCAAATTG-ACTATTATGCCCTCATATCATAATTATGAAA-ATACC-CATTCTCTTA
9282413 TA
128 TA
* * * * *
9282415 ATTATTTACCAAATAATCTCTCATGAAATTACTAAAATACCTTTTTTAATGTATGATAAAAAATT
1 ATTATTTACTAAATAATCCCT-ATGAAATTACTAAAATACCTTTTTCAATATATGATAAGAAATT
* * * * *
9282480 GACATGTTGTCAAATGGACTATTATGCCCTCATATAATAATTACGAAAATACTCATTCTCTTATA
65 GACATGTAGTCAAATTGACTATTATGCCCTCATATCATAATTATGAAAATACCCATTCTCTTATA
** * * * * * *
9282545 ATTA-TTGGTAAGTAATCCTATATGAAATTACCAAAATACC-TTTTCTATTATATTAGAA-AAAG
1 ATTATTTACTAAATAATCC-CTATGAAATTACTAAAATACCTTTTTC-AATATATGATAAGAAA-
* * * * * * *
9282607 TTTACATGTGGCCAAATTGACTACTATG-CCTACATACCATAATTACGAAAATA---ATTTTCAT
63 TTGACATGTAGTCAAATTGACTATTATGCCCT-CATATCATAATTATGAAAATACCCATTCTC--
9282668 TTATA
125 TTATA
*
9282673 ATTATTTACTAAAAAATCTCCTATGAAA
1 ATTATTTACTAAATAATC-CCTATGAAA
9282701 ACTATTTTCA
Statistics
Matches: 743, Mismatches: 150, Indels: 80
0.76 0.15 0.08
Matches are distributed among these distances:
126 16 0.02
127 68 0.09
128 51 0.07
129 219 0.29
130 359 0.48
131 30 0.04
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (129 bp):
ATTATTTACTAAATAATCCCTATGAAATTACTAAAATACCTTTTTCAATATATGATAAGAAATTG
ACATGTAGTCAAATTGACTATTATGCCCTCATATCATAATTATGAAAATACCCATTCTCTTATA
Found at i:9282440 original size:257 final size:259
Alignment explanation
Indices: 9281989--9282550 Score: 645
Period size: 257 Copynumber: 2.2 Consensus size: 259
9281979 GAAAATCACA
* * *
9281989 CCCTCATATCATAATTA-TAAAAATACCCATTCTTTTATAATTATTTACTAAATAATCCCCTATA
1 CCCTAATATCATAATTACGAAAAA-ACCC-TTCTCTTATAATTATTTACTAAATAATCCCCTATA
* * * *
9282053 AAATTCAAAAAATACATTTTTCAATATATGATAGGAAATTACCATGTGGTCAAATGGACCATTAT
64 AAATTCAAAAAATACATTTTCCAATATATGATAAGAAATTACCATGTGGCCAAATGAACCATTAT
** * * * *
9282118 GCGTTCAAGCCATAATTATGAAAATACCCCTTCTCTTATAATTAGCTACTAAATAATCCCTCATG
129 GCCATCAAACCATAATTATCAAAATACCCCTTCCCTTATAATTAGCTACCAAATAATCCCTCATG
* * *
9282183 AAATTACTAAATTACCCTTTTTATTATATGA-AAAGAAATTGACATG-TGCCCAAATTGACAATT
194 AAATTACTAAAATACCCTTTTTAATATATGATAAA-AAATTGACATGTTG-CCAAATGGACAATT
9282246 ATG
257 ATG
* * *
9282249 CCTTAATATCATAATTACGAAAAAACCCTTCTCTTATAATTATTTATTAAA-AA-CCCCTATGAA
1 CCCTAATATCATAATTACGAAAAAACCCTTCTCTTATAATTATTTACTAAATAATCCCCTATAAA
* * * * * *
9282312 ATT-ATTAAAATGCCTTTTCCATTATATGATAAGAAATTGA-TATGTGGCCAAATGAACTATTAT
66 ATTCA-AAAAATACATTTTCCAATATATGATAAGAAATT-ACCATGTGGCCAAATGAACCATTAT
* * * ** *
9282375 GCCATCAAATCATAATTA-CAAACATACCTCTTCCCTTGTAATTATTTACCAAATAATCTCTCAT
129 GCCATCAAACCATAATTATCAAA-ATACCCCTTCCCTTATAATTAGCTACCAAATAATCCCTCAT
* * * *
9282439 GAAATTACTAAAATACCTTTTTTAATGTATGATAAAAAATTGACATGTTGTCAAATGGACTATTA
193 GAAATTACTAAAATACCCTTTTTAATATATGATAAAAAATTGACATGTTGCCAAATGGACAATTA
9282504 TG
258 TG
* * * *
9282506 CCCTCATATAATAATTACGAAAATACTCATTCTCTTATAATTATT
1 CCCTAATATCATAATTACGAAAAAAC-CCTTCTCTTATAATTATT
9282551 GGTAAGTAAT
Statistics
Matches: 255, Mismatches: 40, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
256 4 0.02
257 181 0.71
258 25 0.10
259 21 0.08
260 19 0.07
261 5 0.02
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.36
Consensus pattern (259 bp):
CCCTAATATCATAATTACGAAAAAACCCTTCTCTTATAATTATTTACTAAATAATCCCCTATAAA
ATTCAAAAAATACATTTTCCAATATATGATAAGAAATTACCATGTGGCCAAATGAACCATTATGC
CATCAAACCATAATTATCAAAATACCCCTTCCCTTATAATTAGCTACCAAATAATCCCTCATGAA
ATTACTAAAATACCCTTTTTAATATATGATAAAAAATTGACATGTTGCCAAATGGACAATTATG
Found at i:9283594 original size:130 final size:130
Alignment explanation
Indices: 9282816--9284971 Score: 1566
Period size: 130 Copynumber: 16.7 Consensus size: 130
9282806 ATATCCTTAC
* * * * * * * **
9282816 ATCATAATAACGAAAATACCCCTTCTATTATAATTATTTATTAAATAATATCCTATGAAATTATG
1 ATCATAATTATGAAAATACCTCTTCTTTTATAATTATTTACTAAATAATCTCCTATAAAATTAAC
* * * * * *
9282881 AAAAT-GCCATTTCATTATATGATAAGAAATTGACATGT-GGCAAATTTGA-TAATTATGCCATA
66 AAAATACCCTTTTCATTATATGATAAGAAATTGACATGTAGCCAAA-TGGACT-ATTATGCCCTC
9282943 AT
129 AT
* * *
9282945 ATCATAATTATGAAAATA-TTCTTTTTCTTATAATTATTTACTAAATAATC-CCTATGAAATTAA
1 ATCATAATTATGAAAATACCTCTTCTT-TTATAATTATTTACTAAATAATCTCCTATAAAATTAA
* * * * *
9283008 CCAAATACCTTTTTCATTATATGATAAAAAATTGACATGT-GATCAAATGGACTATTATGACCTC
65 CAAAATACCCTTTTCATTATATGATAAGAAATTGACATGTAG-CCAAATGGACTATTATGCCCTC
9283072 AT
129 AT
* * * * * * *
9283074 AACATAATTACGAAATTACAAT-TT-TCTTATAATTATTTACTAACTAA-----TATAAAATTAT
1 ATCATAATTATGAAAATAC-CTCTTCTTTTATAATTATTTACTAAATAATCTCCTATAAAATTAA
* * * * * * **
9283132 CAAAATACCCCTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGAATTGTTATTCTTTCA
65 CAAAATACCCTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTCA
9283197 T
130 T
* * * * * * * * * * *
9283198 ACCAT-TTTACGAAAATACC-CTTATCTTATATTTGTTTATTAAATAATCACTTATTAAATT-AC
1 ATCATAATTATGAAAATACCTCTTCTTTTATAATTATTTACTAAATAATCTCCTATAAAATTAAC
* * * * *
9283260 AAAAATA-TCTTTTCCATTATA-CATTAAGATATTGGCATGTAGCCAAATGGATTATTATGCCCT
66 -AAAATACCCTTTT-CATTATATGA-TAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCT
9283323 CA-
128 CAT
* * * * *
9283325 AGCCATTATTATGAAAATACCTCTTTTTTTATAATTATTTACAAAATAATCCCCTA-AGAAATTA
1 A-TCATAATTATGAAAATACCTCTTCTTTTATAATTATTTACTAAATAATCTCCTATA-AAATTA
* * * * * * * * * ** **
9283389 CCAAAATGCTC-TTTCATTGTATGAT-AGAAAATTAACATGAAGTCAAATTGACAATTACACTTT
64 ACAAAATACCCTTTTCATTATATGATAAG-AAATTGACATGTAGCCAAATGGACTATTATGCCCT
9283452 CAT
128 CAT
* *
9283455 ATCATAATTATGAAAATACCTCTTCTTTTATAATTATTCATTAAATAATCTCCTATAAAATTAAC
1 ATCATAATTATGAAAATACCTCTTCTTTTATAATTATTTACTAAATAATCTCCTATAAAATTAAC
* * * *
9283520 AAAATACCCTTTTCATTATATGAAAAGAAATTAATATGTAGCCAAATGGACTATTATACCCTCAT
66 AAAATACCCTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTCAT
* * * ** * *
9283585 GTCATAATTATGAAAATACCCCTTCTTTTATAATTATTTATTAAATAATCTCAAAAAAAATTACC
1 ATCATAATTATGAAAATACCTCTTCTTTTATAATTATTTACTAAATAATCTCCTATAAAATTAAC
* * * * * * * * * * *
9283650 AAAATGCTCTTTCCATTAAAT-TTAGGAAATTGAC-TATAGTCAAATGAACAATTATGCTCTCAT
66 AAAATACCCTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTCAT
* *
9283713 ATCATAATTATGAAAATATCC-CTTCTTTTATAATTATTTACTAAATAATCTCCTATGAAATTCA
1 ATCATAATTATGAAAATA-CCTCTTCTTTTATAATTATTTACTAAATAATCTCCTATAAAATTAA
* * * * * * * *
9283777 GAAAATA-CATTTTCTATTATATGATTAGAAATTGACATATGGTCATATGGACTACTATGCCCTC
65 CAAAATACCCTTTTC-ATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTC
*
9283841 AA
129 AT
* * * *
9283843 ATCATAATTATGAAAATACC-CATTCTATTATAATTATTTACCAAATAATC-CCTTATGAAA-TC
1 ATCATAATTATGAAAATACCTC-TTCTTTTATAATTATTTACTAAATAATCTCC-TATAAAATTA
* * * ** *
9283905 ACTAAATTA-CTTTTTCTATTATATGACAAGAAATTGACATGT-GACCAAATCCACTACTATGCC
64 AC-AAAATACCCTTTTC-ATTATATGATAAGAAATTGACATGTAG-CCAAATGGACTATTATGCC
9283968 CTCAT
126 CTCAT
* * * * ** * *
9283973 ATTATAATTATGAAAGTATCAT-TTCTCTTATAATTATTTACTAAATAATCTTTTATGAAATTAC
1 ATCATAATTATGAAAATA-CCTCTTCTTTTATAATTATTTACTAAATAATCTCCTATAAAATTAA
* * * *
9284037 CAAAATGCCC-TTTCTATTATATGATAAGAAAATTGATATGTGGCCAAATGAACTATTATGCCCT
65 CAAAATACCCTTTTC-ATTATATGATAAG-AAATTGACATGTAGCCAAATGGACTATTATGCCCT
*
9284101 CAA
128 CAT
** * ** * *
9284104 ATCATAATTACAAAAATACCTCTTCTTTTGTAATTATTTACTAAATAATCTTTTATGAAATT-TC
1 ATCATAATTATGAAAATACCTCTTCTTTTATAATTATTTACTAAATAATCTCCTATAAAATTAAC
* * * *
9284168 TAAAATACCC-TTTCTAATATATGACAAGAAATTGACATGTTA-CCAAATAGACTATTATGCCAT
66 -AAAATACCCTTTTC-ATTATATGATAAGAAATTGACATG-TAGCCAAATGGACTATTATGCCCT
9284231 CAT
128 CAT
* ** *
9284234 A-CAATAATTATGAAAATACCCCTTCTTTTATAATTATTTTGTAAATAATC-CCTTATGAAATTA
1 ATC-ATAATTATGAAAATACCTCTTCTTTTATAATTATTTACTAAATAATCTCC-TATAAAATTA
* * * * * * *
9284297 CCAAAATA-CCTTTTACATTATATGAT-AGTAAGTTAACTTG-CGATCAAATTGACTATTATGCC
64 ACAAAATACCCTTTT-CATTATATGATAAG-AAATTGACATGTAG-CCAAATGGACTATTATGCC
9284359 CTCAT
126 CTCAT
* * * *
9284364 ACCATAATTATGGAAATACC-CTTACTTTTA-ACATTATTTAATAAATAATCGCCTATAAAATTA
1 ATCATAATTATGAAAATACCTCTT-CTTTTATA-ATTATTTACTAAATAATCTCCTATAAAATTA
* * * ** * * * * * **
9284427 TCAAAATA-CTTTTTGCTTTATACAATAAGAAATTGACATGCATCCAAACGGATTATTATACCAA
64 ACAAAATACCCTTTT-CATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCT
9284491 CAT
128 CAT
* * * *
9284494 ACCATAATTATGAACATAACCT-TT-TGCTTATAATTATTTACTAAATAAT-TCCTTAAAAAATT
1 ATCATAATTATGAAAAT-ACCTCTTCT-TTTATAATTATTTACTAAATAATCTCC-TATAAAATT
*** * * * * * **
9284556 -ACTAAAATGTACTTTTCATTATATGATAAGAAATTAACATGTAACCAAATAGAATATTATACTG
63 AAC-AAAATACCCTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCC
*
9284620 TTAT
127 TCAT
* * * *
9284624 ACCATAATTATGAAAATAACT-TATC--TTATAATTATTTAATAAATAATC-CC-ATAAGAAACT
1 ATCATAATTATGAAAATACCTCT-TCTTTTATAATTATTTACTAAATAATCTCCTAT-A-AAATT
* * * * * * * ** *
9284684 ACCAAAATGCCCTTTTCATTTTATGATAAAAAATTTACATGT-GTCCAGATTGACTATTATATCA
63 AACAAAATACCCTTTTCATTATATGATAAGAAATTGACATGTAG-CCAAATGGACTATTATGCCC
9284748 TCAT
127 TCAT
** * * *
9284752 ATCATAATTATGAAACGA-CTCTTTTTCTTGTAATTATTTACTAAATAATCTCCTATAAAATTAT
1 ATCATAATTATGAAAATACCTCTTCTT-TTATAATTATTTACTAAATAATCTCCTATAAAATTAA
* * * * * *** *
9284816 CAAAATATCCTTTGCATTATATGATAGGAAATTGACATGTGGCCAAATGAACTATTATGTTTTTA
65 CAAAATACCCTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTCA
9284881 T
130 T
* ** * *
9284882 ACCATAATTATGAAAATATCC-CTTCGCTTATAGTTATTTACTAAATAATC-CCTTATGAAATT-
1 ATCATAATTATGAAAATA-CCTCTTCTTTTATAATTATTTACTAAATAATCTCC-TATAAAATTA
9284944 ACTAAAATACCCTTTTCATTATATGATA
64 AC-AAAATACCCTTTTCATTATATGATA
9284972 TACATTAAAA
Statistics
Matches: 1623, Mismatches: 318, Indels: 171
0.77 0.15 0.08
Matches are distributed among these distances:
122 2 0.00
123 30 0.02
124 65 0.04
125 1 0.00
126 1 0.00
127 15 0.01
128 281 0.17
129 251 0.15
130 831 0.51
131 142 0.09
132 4 0.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.38
Consensus pattern (130 bp):
ATCATAATTATGAAAATACCTCTTCTTTTATAATTATTTACTAAATAATCTCCTATAAAATTAAC
AAAATACCCTTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCCTCAT
Found at i:9284460 original size:909 final size:901
Alignment explanation
Indices: 9282816--9284971 Score: 2245
Period size: 909 Copynumber: 2.4 Consensus size: 901
9282806 ATATCCTTAC
* * * * *
9282816 ATCATAATAACGAAAATACCCCTTCTATTATAATTATTTATTAAATAATATCCTATGAAATTATG
1 ATCATAATTATGAAAATA-CCCTTCTATTATAATTATTTAATAAATAATCTCCTATGAAATTACG
9282881 AAAATGCCA-TTTCATTATATGATAAGAAATTGACATGTGG-CAAATTTGA-TAATTATGCCAT-
65 AAAATGCCATTTTCATTATATGATAAGAAATTGACATGTGGTCAAA-TTGACT-ATTATGCCATC
*
9282942 AATATCATAATTATGAAAATATTCTTTTTCTTATAATTATTTACTAAATAATCCCTATGAAATTA
128 AA-ATCATAATTATGAAAATACTCTTTTTCTTATAATTATTTACTAAATAATCCCTATGAAA-TA
* * * *
9283007 ACCAAATACCTTTTTCATTATATGATAAAAAATTGACATGTGATCAAATGGACTATTATGACCTC
191 ACTAAATACCTTTTTCATTATATGATAAGAAATTGACATGTGACCAAATGAACTATTATGACCTC
* * * * *
9283072 ATAACATAATTACGAAATTA-CAATTT-TCTTATAATTATTTACTAACTAA---TATAAAATTAT
256 ATAACATAATTATGAAAATATC-ATTTCTCTTATAATTATTTACTAAATAATCTTATGAAATTAC
* * * **
9283132 CAAAATACCCCTTTC-ATTATATGATAAGAAATTGACATGTGGCCAAATGAATTGTTATTCTTTC
320 CAAAATA-CCCTTTCTATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTC
* * * * * * *
9283196 ATACCATTTTACGAAAATACCCTTATCTTATATTTGTTTATTAAATAATCACTTATTAAATTACA
384 AAACCATATTACAAAAATACCCTTATCTTATAATTATTTACTAAATAATCACTTATGAAATTACA
* * * * * * * * *
9283261 AAAATATCTTTTCCATTATACATTAAGATATTGGCATGTAGCCAAATGGATTATTATGCCCTCAA
449 AAAATACCCTTTCCAATATACATCAAGAAATTGACATGTAGCCAAATAGACTATTATGCCATCAA
* * * *
9283326 GCCATTATTATGAAAATACCTCTTTTTTTATAATTATTTACAAAATAATCCCCTAAGAAATTACC
514 GCAATAATTATGAAAATACCCCTTCTTTTATAATTATTTACAAAATAATCCCCTAAGAAATTACC
* * **
9283391 AAAATGCTCTTTCATTGTATGATAGAAAATTAACATGAAGTCAAATTGACAATTACACTTTCATA
579 AAAATCCTCTTTCATTATATGATAGAAAATTAACATGAAGTCAAATTGACAATTACACCCTCATA
* * *
9283456 TCATAATTATGAAAATACCTCTTCTTTTATAATTATTCATTAAATAATCTCCTATAAAATTAACA
644 CCATAATTATGAAAATACCTCTTCTTTTATAATTATTCAATAAATAATCGCCTATAAAATTAACA
* * * * ** *
9283521 AAATACCCTTTTCATTATATGAAAAGAAATTAATATGTAGCCAAATGGACTATTATACCCTCATG
709 AAATACCCTTTTCATTATATCAAAAGAAATTAACATGCAGCCAAACGGACTATTATACCAACATA
* * *
9283586 TCATAATTATGAAAATACCCCTTCTT-TTATAATTATTTATTAAATAA-TCTCAAAAAAAATTAC
774 CCATAATTATGAAAATA-ACCTT-TTCTTATAATTATTTACTAAATAATTC-CAAAAAAAATTAC
* * * ** *
9283649 CAAAATGCT-CTTTCCATTAAAT-TTAGGAAATTGAC-TATAGTCAAAT-GAACAATTATGCTCT
836 CAAAATG-TACTTTCCATTAAATGATAAGAAATTAACATATAACCAAATAGAA-AATTATACTCT
9283710 CAT
899 CAT
* *
9283713 ATCATAATTATGAAAATATCCCTTCTTTTATAATTATTTACTAAATAATCTCCTATGAAATT-CA
1 ATCATAATTATGAAAATA-CCCTTCTATTATAATTATTTAATAAATAATCTCCTATGAAATTAC-
* * * * * * *
9283777 GAAAAT-ACATTTTCTATTATATGATTAGAAATTGACATATGGTCATATGGACTACTATGCCCTC
64 GAAAATGCCATTTTC-ATTATATGATAAGAAATTGACATGTGGTCAAATTGACTATTATGCCATC
* * * * * *
9283841 AAATCATAATTATGAAAATACCCATTCTATTATAATTATTTACCAAATAATCCCTTATGAAATCA
128 AAATCATAATTATGAAAATACTCTTTTTCTTATAATTATTTACTAAATAATCCC-TATGAAATAA
* ** * *
9283906 CTAAATTA-CTTTTTCTATTATATGACAAGAAATTGACATGTGACCAAATCCACTACTATGCCCT
192 CTAAA-TACCTTTTTC-ATTATATGATAAGAAATTGACATGTGACCAAATGAACTATTATGACCT
** *
9283970 CATATTATAATTATGAAAGTATCATTTCTCTTATAATTATTTACTAAATAATCTTTTATGAAATT
255 CATAACATAATTATGAAAATATCATTTCTCTTATAATTATTTACTAAATAATC--TTATGAAATT
* *
9284035 ACCAAAATGCCCTTTCTATTATATGATAAGAAAATTGATATGTGGCCAAATGAACTATTATGCCC
318 ACCAAAATACCCTTTCTATTATATGATAAG-AAATTGACATGTGGCCAAATGAACTATTATGCCC
* * * * **
9284100 TCAAATCATAATTACAAAAATACCTCTTCTTTTGTAATTATTTACTAAATAATCTTTTATGAAAT
382 TCAAACCAT-ATTACAAAAATACC-CTTATCTTATAATTATTTACTAAATAATCACTTATGAAAT
* * * *
9284165 TTCTAAAATACCCTTTCTAATATATGA-CAAGAAATTGACATGTTA-CCAAATAGACTATTATGC
445 TACAAAAATACCCTTTCCAATATA-CATCAAGAAATTGACATG-TAGCCAAATAGACTATTATGC
*** * *
9284228 CATCATA-CAATAATTATGAAAATACCCCTTCTTTTATAATTATTTTGTAAATAATCCCTTATGA
508 CATCA-AGCAATAATTATGAAAATACCCCTTCTTTTATAATTATTTACAAAATAATCCCCTAAGA
* * * * *
9284292 AATTACCAAAATACCT-TTTACATTATATGATAGTAAGTTAACTTG-CGATCAAATTGACTATTA
572 AATTACCAAAAT-CCTCTTT-CATTATATGATAGAAAATTAACATGAAG-TCAAATTGACAATTA
** * *
9284355 TGCCCTCATACCATAATTATGGAAATACC-CTTACTTTTA-ACATTATTTAATAAATAATCGCCT
634 CACCCTCATACCATAATTATGAAAATACCTCTT-CTTTTATA-ATTATTCAATAAATAATCGCCT
* * * * * *
9284418 ATAAAATTATCAAAATA-CTTTTTGCTTTATA-CAATAAGAAATTGACATGCATCCAAACGGATT
697 ATAAAATTAACAAAATACCCTTTT-CATTATATCAA-AAGAAATTAACATGCAGCCAAACGGACT
*
9284481 ATTATACCAACATACCATAATTATGAACATAACCTTTTGCTTATAATTATTTACTAAATAATTCC
760 ATTATACCAACATACCATAATTATGAAAATAACCTTTT-CTTATAATTATTTACTAAATAATTCC
** * * * * *
9284546 TTAAAAAATTACTAAAATGTACTTTTCATTATATGATAAGAAATTAACATGTAACCAAATAGAAT
824 AAAAAAAATTACCAAAATGTACTTTCCATTAAATGATAAGAAATTAACATATAACCAAATAGAAA
* *
9284611 ATTATACTGTTAT
889 ATTATACTCTCAT
* * * * * * *
9284624 ACCATAATTATGAAAATA-ACTTATCTTATAATTATTTAATAAATAATC-CCATAAGAAACTACC
1 ATCATAATTATGAAAATACCCTTCTATTATAATTATTTAATAAATAATCTCC-TATGAAATTACG
* * * * * **
9284687 AAAATGCCCTTTTCATTTTATGATAAAAAATTTACATGT-GTCCAGATTGACTATTATATCATCA
65 AAAATGCCATTTTCATTATATGATAAGAAATTGACATGTGGT-CAAATTGACTATTATGCCATCA
* ** * * *
9284751 TATCATAATTATGAAACGACTCTTTTTCTTGTAATTATTTACTAAATAATCTCCTATAAAATTAT
129 AATCATAATTATGAAAATACTCTTTTTCTTATAATTATTTACTAAATAATC-CCTATGAAA-TAA
* * * * *** *
9284816 CAAAATATCC-TTTGCATTATATGATAGGAAATTGACATGTGGCCAAATGAACTATTATGTTTTT
192 CTAAATA-CCTTTTTCATTATATGATAAGAAATTGACATGTGACCAAATGAACTATTATGACCTC
* ** * *
9284880 ATACCATAATTATGAAAATATCCCTTCGCTTATAGTTATTTACTAAATAATCCCTTATGAAATTA
256 ATAACATAATTATGAAAATATCATTTCTCTTATAATTATTTACTAAATAAT--CTTATGAAATTA
*
9284945 CTAAAATACCCTTT-TCATTATATGATA
319 CCAAAATACCCTTTCT-ATTATATGATA
9284972 TACATTAAAA
Statistics
Matches: 1031, Mismatches: 180, Indels: 84
0.80 0.14 0.06
Matches are distributed among these distances:
896 2 0.00
897 66 0.06
898 95 0.09
899 77 0.07
900 23 0.02
904 7 0.01
905 28 0.03
906 35 0.03
907 14 0.01
908 166 0.16
909 448 0.43
910 30 0.03
911 37 0.04
912 3 0.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.38
Consensus pattern (901 bp):
ATCATAATTATGAAAATACCCTTCTATTATAATTATTTAATAAATAATCTCCTATGAAATTACGA
AAATGCCATTTTCATTATATGATAAGAAATTGACATGTGGTCAAATTGACTATTATGCCATCAAA
TCATAATTATGAAAATACTCTTTTTCTTATAATTATTTACTAAATAATCCCTATGAAATAACTAA
ATACCTTTTTCATTATATGATAAGAAATTGACATGTGACCAAATGAACTATTATGACCTCATAAC
ATAATTATGAAAATATCATTTCTCTTATAATTATTTACTAAATAATCTTATGAAATTACCAAAAT
ACCCTTTCTATTATATGATAAGAAATTGACATGTGGCCAAATGAACTATTATGCCCTCAAACCAT
ATTACAAAAATACCCTTATCTTATAATTATTTACTAAATAATCACTTATGAAATTACAAAAATAC
CCTTTCCAATATACATCAAGAAATTGACATGTAGCCAAATAGACTATTATGCCATCAAGCAATAA
TTATGAAAATACCCCTTCTTTTATAATTATTTACAAAATAATCCCCTAAGAAATTACCAAAATCC
TCTTTCATTATATGATAGAAAATTAACATGAAGTCAAATTGACAATTACACCCTCATACCATAAT
TATGAAAATACCTCTTCTTTTATAATTATTCAATAAATAATCGCCTATAAAATTAACAAAATACC
CTTTTCATTATATCAAAAGAAATTAACATGCAGCCAAACGGACTATTATACCAACATACCATAAT
TATGAAAATAACCTTTTCTTATAATTATTTACTAAATAATTCCAAAAAAAATTACCAAAATGTAC
TTTCCATTAAATGATAAGAAATTAACATATAACCAAATAGAAAATTATACTCTCAT
Found at i:9284809 original size:388 final size:388
Alignment explanation
Indices: 9282947--9284971 Score: 1057
Period size: 388 Copynumber: 5.2 Consensus size: 388
9282937 GCCATAATAT
** * ** * *
9282947 CATAATTATGAAAATATTCTTTTTCTTATAATTATTTACTAAATAA-TCCCTATGAAATTAAC-C
1 CATAATTATGAAAATAACCCTTCGCTTATAATTATTTACTAAATAATTCCTTATGAAATT-ACTA
* * * * * *
9283010 AAA-TACCTTTTTCATTATATGATAAAAAATTGACATGTGATCAAATGGACTATTATGACC-TCA
65 AAATTA-C-TTTTCATTATATGATAAGAAATTAACATGTAACCAAATAGAATATTAT-ACCATCA
* * * * * * * *
9283073 TA-ACATAATTACGAAATTACAATTTTCTTATAATTATTTACTAACTAAT---AT-A-AAATTAT
127 TACA-ATAATTATGAAAATACACTTATCTTATAATTATTTAATAAATAATCCCATAAGAAACTAC
* * * * ** * * * **
9283132 CAAAATACCCCTTT-CATTATATGATAAGAAATTGACATGTGGCCAAA-TGAATTGTTATTCTTT
191 CAAAATA-CCTTTTACATTATATGATAAAAAATTAACATGCGATCAAATTG-ACTATTATACCAT
* * * * * * * * * * *
9283195 CATACCAT-TTTACGAAAATACCCTTA-TCTTATA-TTTGTTTATTAAATAATCACTTATTAAAT
254 CATACCATAATTATGGAAAGACCCTTACTTTTA-ACATTATTTAATAAATAATCGCCTATAAAAT
* * * * * * * * * *
9283257 TA-CAAAAATATCTTTTCCATTATACATTAAGATATTGGCATGTAGCCAAATGGATTATTATGCC
318 TATC-AAAATATCCTTTGCATTATACAATAAGAAATTGACATGCAGCCAAACGAACTATTATACC
**
9283321 CTCA-AGC
382 AACATA-C
* *** * * * * *
9283328 CATTATTATGAAAAT-ACCTCTTTTTTTATAATTATTTACAAAATAATCCCCTAAGAAATTACCA
1 CATAATTATGAAAATAACC-CTTCGCTTATAATTATTTACTAAATAATTCCTTATGAAATTACTA
* * * * * **
9283392 AAA-TGCTCTTTCATTGTATGAT-AGAAAATTAACATG-AAGTCAAATTGACA-ATTACACTTTC
65 AAATTACT-TTTCATTATATGATAAG-AAATTAACATGTAA-CCAAATAGA-ATATTATACCATC
* * * * *
9283453 ATATC-ATAATTATGAAAATACCTCTTCTTTTATAATTATTCATTAAATAATCTCC-TATA-AAA
126 ATA-CAATAATTATGAAAATA-CACTTATCTTATAATTATTTAATAAATAATC-CCATA-AGAAA
* * * * * *
9283515 TTAACAAAATACCCTTTT-CATTATATGA-AAAGAAATTAATATG-TAGCCAAATGGACTATTAT
187 CTACCAAAATA-CCTTTTACATTATATGATAAA-AAATTAACATGCGA-TCAAATTGACTATTAT
* ** * * * * **
9283577 ACCCTCATGTCATAATTATGAAAATACCCCTT-CTTTTATA-ATTATTTATTAAATAATCTCAAA
249 ACCATCATACCATAATTATGGAAAGA-CCCTTACTTTTA-ACATTATTTAATAAATAATCGCCTA
* * * * * * * * *
9283640 AAAAATTACCAAAAT-GCTCTTTCCATTA-A-ATTTAGGAAATTGACTAT--AGTCAAATGAACA
312 TAAAATTATCAAAATATC-CTTTGCATTATACA-ATAAGAAATTGAC-ATGCAGCCAAACGAACT
* * *
9283700 ATTATGCTC-TCATAT
374 ATTATAC-CAACATAC
* **
9283715 CATAATTATGAAAATATCCCTTCTTTTATAATTATTTACTAAATAATCTCC-TATGAAATT-C-A
1 CATAATTATGAAAATAACCCTTCGCTTATAATTATTTACTAAATAAT-TCCTTATGAAATTACTA
* * * * *** * * * * * *
9283777 GAAAATACATTTTCTATTATATGATTAGAAATTGACATATGGTCATATGGACTACTATGCCCTCA
65 -AAATTAC-TTTTC-ATTATATGATAAGAAATTAACATGTAACCAAATAGAATATTATACCATCA
* * * * ** * *
9283842 AATC-ATAATTATGAAAATACCCATTCTATTATAATTATTTACCAAATAATCCCTTATGAAA-TC
127 TA-CAATAATTATGAAAATACAC-TTATCTTATAATTATTTAATAAATAATCCCATAAGAAACT-
* * * * * * * * ** * * *
9283905 ACTAAATTA-CTTTTTCTATTATATGACAAGAAATTGACATGTGACCAAATCCACTACTATGCCC
189 ACCAAAATACCTTTTAC-ATTATATGATAAAAAATTAACATGCGATCAAATTGACTATTATACCA
** * * * * * *** *
9283969 TCATATTATAATTAT-GAAAGTATCATTTCTCTTATA-ATTATTTACTAAATAATCTTTTATGAA
253 TCATACCATAATTATGGAAAG-ACCCTTACTTTTA-ACATTATTTAATAAATAATCGCCTATAAA
* ** ** * ** *
9284032 ATTACCAAAATGCCCTTT-CTATTATATGATAAGAAAATTGATATGTGGCCAAATGAACTATTAT
316 ATTATCAAAATATCCTTTGC-ATTATACAATAAG-AAATTGACATGCAGCCAAACGAACTATTAT
* ** * *
9284096 GCCCTCAAAT
379 ACCAACATAC
** ** * * *
9284106 CATAATTACAAAAAT-ACCTCTTCTTTTGTAATTATTTACTAAATAA-TCTTTTATGAAATTTCT
1 CATAATTATGAAAATAACC-CTTCGCTTATAATTATTTACTAAATAATTC-CTTATGAAATTACT
* * * * * * *
9284169 AAAA-TACCCTTTCTAATATATGACAAGAAATTGACATGTTACCAAATAGACTATTATGCCATCA
64 AAAATTA-CTTTTC-ATTATATGATAAGAAATTAACATGTAACCAAATAGAATATTATACCATCA
* * * ** * * *
9284233 TACAATAATTATGAAAATACCCCTTCTTTTATAATTATTTTGTAAATAATCCCTTATGAAATTAC
127 TACAATAATTATGAAAATA-CACTTATCTTATAATTATTTAATAAATAATCCCATAAGAAACTAC
** * * * *
9284298 CAAAATACCTTTTACATTATATGATAGTAAGTTAACTTGCGATCAAATTGACTATTATGCCCTCA
191 CAAAATACCTTTTACATTATATGATAAAAAATTAACATGCGATCAAATTGACTATTATACCATCA
*
9284363 TACCATAATTATGGAAATACCCTTACTTTTAACATTATTTAATAAATAATCGCCTATAAAATTAT
256 TACCATAATTATGGAAAGACCCTTACTTTTAACATTATTTAATAAATAATCGCCTATAAAATTAT
* * * * *
9284428 CAAAATA-CTTTTTGCTTTATACAATAAGAAATTGACATGCATCCAAACGGATTATTATACCAAC
321 CAAAATATC-CTTTGCATTATACAATAAGAAATTGACATGCAGCCAAACGAACTATTATACCAAC
9284492 ATAC
385 ATAC
* * * **
9284496 CATAATTATGAACATAACCTTTTGCTTATAATTATTTACTAAATAATTCCTTAAAAAATTACTAA
1 CATAATTATGAAAATAACCCTTCGCTTATAATTATTTACTAAATAATTCCTTATGAAATTACTAA
** *
9284561 AATGTACTTTTCATTATATGATAAGAAATTAACATGTAACCAAATAGAATATTATACTGTTATAC
66 AAT-TACTTTTCATTATATGATAAGAAATTAACATGTAACCAAATAGAATATTATACCATCATAC
*
9284626 CATAATTATGAAAATA-ACTTATCTTATAATTATTTAATAAATAATCCCATAAGAAACTACCAAA
130 AATAATTATGAAAATACACTTATCTTATAATTATTTAATAAATAATCCCATAAGAAACTACCAAA
* * * * * *
9284690 ATGCCCTTTT-CATTTTATGATAAAAAATTTACATGTG-TCCAGATTGACTATTATATCATCATA
195 AT-ACCTTTTACATTATATGATAAAAAATTAACATGCGAT-CAAATTGACTATTATACCATCATA
* * * * * *
9284753 TCATAATTAT-GAAACGACTCTT-TTTCTTGTA-ATTATTTACTAAATAATCTCCTATAAAATTA
258 CCATAATTATGGAAA-GACCCTTACTT-TT-AACATTATTTAATAAATAATCGCCTATAAAATTA
** * ** * ******
9284815 TCAAAATATCCTTTGCATTATATGATAGGAAATTGACATGTGGCCAAATGAACTATTATGTTTTT
320 TCAAAATATCCTTTGCATTATACAATAAGAAATTGACATGCAGCCAAACGAACTATTATACCAAC
9284880 ATAC
385 ATAC
* * *
9284884 CATAATTATGAAAATATCCCTTCGCTTATAGTTATTTACTAAATAATCCCTTATGAAATTACTAA
1 CATAATTATGAAAATAACCCTTCGCTTATAATTATTTACTAAATAATTCCTTATGAAATTACTAA
9284949 AA-TACCCTTTTCATTATATGATA
66 AATTA--CTTTTCATTATATGATA
9284972 TACATTAAAA
Statistics
Matches: 1299, Mismatches: 263, Indels: 157
0.76 0.15 0.09
Matches are distributed among these distances:
380 6 0.00
381 94 0.07
382 38 0.03
385 2 0.00
386 13 0.01
387 152 0.12
388 463 0.36
389 73 0.06
390 149 0.11
391 286 0.22
392 22 0.02
393 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.38
Consensus pattern (388 bp):
CATAATTATGAAAATAACCCTTCGCTTATAATTATTTACTAAATAATTCCTTATGAAATTACTAA
AATTACTTTTCATTATATGATAAGAAATTAACATGTAACCAAATAGAATATTATACCATCATACA
ATAATTATGAAAATACACTTATCTTATAATTATTTAATAAATAATCCCATAAGAAACTACCAAAA
TACCTTTTACATTATATGATAAAAAATTAACATGCGATCAAATTGACTATTATACCATCATACCA
TAATTATGGAAAGACCCTTACTTTTAACATTATTTAATAAATAATCGCCTATAAAATTATCAAAA
TATCCTTTGCATTATACAATAAGAAATTGACATGCAGCCAAACGAACTATTATACCAACATAC
Found at i:9285719 original size:129 final size:129
Alignment explanation
Indices: 9285051--9286092 Score: 627
Period size: 129 Copynumber: 8.1 Consensus size: 129
9285041 CCAAATATAA
* * * ** * **
9285051 TATTACGCCCTTACATCATAATTATGAAAATACCTCTTCTCTTATATTTATTTTTTAAATAATCC
1 TATTATGCCCTCATATCATAATTACAAAAATACC-CTTCTCTTATAATTATTTACTAAATAATCC
* * ** * *
9285116 CCTAAGAAAA-TACCAAAATGCCATTT-TCATTATA-CA-AA-AAAAGGACATGTGGCCAAATTG
65 CTTAA-AAAATTACCAAAATGCCATTTCT-ATTATATGATAAGAAATTGACATATGGTCAAATTG
9285176 AC
128 AC
* * * * * * *
9285178 AATTATGTCTTTATATCATAATGACGAAAATACCCTT-T-TTACAATTATTTACTAAATAATCAC
1 TATTATGCCCTCATATCATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATC-C
** * ** * * * ** *
9285241 AGT-GAAAATT-TTAAAATACCATTT-TCATTATATGATAAGAAATTGATATGTGACCAAATGGA
65 CTTAAAAAATTACCAAAATGCCATTTCT-ATTATATGATAAGAAATTGACATATGGTCAAATTGA
9285303 C
129 C
* ** * * * * * *
9285304 TGTTATAACCTTATACCATAATTACAAAAATACCTTTATCTTATAGTTATTTACTAAATAATCTC
1 TATTATGCCCTCATATCATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCCC
** * ** * * ** * * * * *
9285369 TT-ATGAATTATCAATGTACCCTCACCATTATATGATAAGAAATTGACATGTAGCCAAATAGAC
66 TTAAAAAATTACCAAAATGCCATTTCTATTATATGATAAGAAATTGACATATGGTCAAATTGAC
* * * * * * *
9285432 TATTAT-TCTTACATA-CTATAATTACGAAAATACCTTTCTTTTA-AATTATTTACTGACTAATC
1 TATTATGCCCT-CATATC-ATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATC
** ** * * * ** *
9285494 CCTTATGAAATTTTCAAAATGTTC-TTTCCATTATATGATAAGAAATTGGCATAT-AACTAAATG
64 CCTTAAAAAATTACCAAAATG-CCATTTCTATTATATGATAAGAAATTGACATATGGTC-AAATT
9285557 GAC
127 GAC
** * * * * *
9285560 TATTATGCCCTTGTGTTATATTTA-AGAAAATACACCTTCT-TTATAATTATTTGCTAAATATTC
1 TATTATGCCCTCATATCATAATTACA-AAAATAC-CCTTCTCTTATAATTATTTACTAAATAATC
* * * * ***
9285623 CTTTAAAAAATTACCAAAATGCCCTTGT-TGTTATATGATAGGAAATTGACATGCAGTCAAATTG
64 CCTTAAAAAATTACCAAAATGCCATT-TCTATTATATGATAAGAAATTGACATATGGTCAAATTG
9285687 AC
128 AC
* * * * * *
9285689 AATTATGCCCTGATTTCATAATTACAAAAATACTCATTTTCTTATAATTATTTACTAAACAATCC
1 TATTATGCCCTCATATCATAATTACAAAAATAC-CCTTCTCTTATAATTATTTACTAAATAATCC
* * * ** * *
9285754 CTTATAAAATTA-AAAAACT-ACATTTTCTATTGCATTATAAGAAATTGACATATGGTCAAATGG
65 CTTAAAAAATTACCAAAA-TGCCA-TTTCTATTATATGATAAGAAATTGACATATGGTCAAATTG
9285817 AC
128 AC
* * * *
9285819 TATTATGCCCTCATATCATATTTACAAAAATACCGTTCTCTTATAATTATTTGCTAGATAATCCC
1 TATTATGCCCTCATATCATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCCC
* * ** * * * * *
9285884 TCAAGAAATTATTAAAATGCCCTTTCTATTATATAATAAAAAATTGACATATGGTTAAATTTAC
66 TTAAAAAATTACCAAAATGCCATTTCTATTATATGATAAGAAATTGACATATGGTCAAATTGAC
* * * * * *
9285948 TATTGTGACCTTATATCATAATTACAAAAATACCTCTTCTTTTATAATTACTTACTCAATAAT-C
1 TATTATGCCCTCATATCATAATTACAAAAATACC-CTTCTCTTATAATTATTTACTAAATAATCC
** * * * *
9286012 CTCTATGAAATTACCAAAATGCCATTT-TCATTATATGATAAGAAATTAACATGTGGCCAAATGG
65 CT-TAAAAAATTACCAAAATGCCATTTCT-ATTATATGATAAGAAATTGACATATGGTCAAATTG
*
9286076 AT
128 AC
*
9286078 TATTATGCCTTCATA
1 TATTATGCCCTCATA
9286093 CCTTTTCCAT
Statistics
Matches: 702, Mismatches: 181, Indels: 61
0.74 0.19 0.06
Matches are distributed among these distances:
123 23 0.03
124 21 0.03
125 5 0.01
126 50 0.07
127 56 0.08
128 159 0.23
129 208 0.30
130 180 0.26
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.37
Consensus pattern (129 bp):
TATTATGCCCTCATATCATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCCC
TTAAAAAATTACCAAAATGCCATTTCTATTATATGATAAGAAATTGACATATGGTCAAATTGAC
Found at i:9285817 original size:259 final size:259
Alignment explanation
Indices: 9285077--9286092 Score: 643
Period size: 259 Copynumber: 4.0 Consensus size: 259
9285067 CATAATTATG
* ** *
9285077 AAAATACCTCTTCTCTTATATTTATTTTTTAAATAATCCC-CTAAGAAAA-TACCAAAATGCCAT
1 AAAATACC-CTTCTCTTATAATTATTTGCTAAATAATCCCTC-AA-AAAATTACCAAAATGCCCT
* * *** * * * * *
9285140 TT-TCATTATA-CA-AAAAAA-GGACATGTGGCCAAATTGACAATTATGTCTTTATATCATAATG
63 TTCT-ATTATATAATAAAAAATTGACATACAGTCAAATTGACAATTATGACCTGATATCATAATT
* * * * * **
9285201 ACGAAAATACC-C-T-TTTTACAATTATTTACTAAATAAT-CAC-AGTGAAAATT-TTAAAAT-A
127 ACAAAAATACCTCTTCTTTTATAATTACTTACTAAACAATCCTCTA-T-AAAATTACAAAAATGA
* * * * * * ** * *
9285259 CCATTTTCATTATATGATAAGAAATTGATATGTGACCAAATGGACTGTTATAACCTTATACCATA
190 -CATTTTCATTACATGATAAGAAATTAACATATGGCCAAATGGACTATTATGCCCTCATATCATA
*
9285324 ATTACA
254 TTTACA
* * * * * * ** * ** * **
9285330 AAAATACCTTTATCTTATAGTTATTTACTAAATAATCTCT-TATGAATTATCAATGTACCCTCAC
1 AAAATACCCTTCTCTTATAATTATTTGCTAAATAATCCCTCAAAAAATTACCAAAATGCCCTTTC
* * * ** * * * * * *
9285394 CATTATATGATAAGAAATTGACATGTAGCCAAATAGACTATTAT--TCTTACATACTATAATTAC
66 TATTATATAATAAAAAATTGACATACAGTCAAATTGACAATTATGACCTGATAT-C-ATAATTAC
* * * * * *
9285457 GAAAATACCT-TTCTTTTA-AATTATTTACT-GACTAATCC-CTTATGAAATTTTC-AAAATGTT
129 AAAAATACCTCTTCTTTTATAATTACTTACTAAAC-AATCCTC-TAT-AAAATTACAAAAATG-A
* * ** ** * ** * *
9285517 C-TTTCCATTATATGATAAGAAATTGGCATATAACTAAATGGACTATTATGCCCTTGTGTTATAT
190 CATTTTCATTACATGATAAGAAATTAACATATGGCCAAATGGACTATTATGCCCTCATATCATAT
9285581 TTA-A
255 TTACA
* * *
9285585 GAAAATACACCTTCT-TTATAATTATTTGCTAAATATTCCTTTAAAAAATTACCAAAATGCCCTT
1 -AAAATAC-CCTTCTCTTATAATTATTTGCTAAATAATCCCTCAAAAAATTACCAAAATGCCCTT
* * ** * * *
9285649 GT-TGTTATATGATAGGAAATTGACATGCAGTCAAATTGACAATTATGCCCTGATTTCATAATTA
64 -TCTATTATATAATAAAAAATTGACATACAGTCAAATTGACAATTATGACCTGATATCATAATTA
*
9285713 CAAAAATA-CTCATT-TTCTTATAATTATTTACTAAACAATCC-CTTATAAAATTA-AAAAACT-
128 CAAAAATACCTC-TTCTT-TTATAATTACTTACTAAACAATCCTC-TATAAAATTACAAAAA-TG
* * * *
9285773 ACATTTTCTATTGCATTATAAGAAATTGACATATGGTCAAATGGACTATTATGCCCTCATATCAT
189 ACATTTTC-ATTACATGATAAGAAATTAACATATGGCCAAATGGACTATTATGCCCTCATATCAT
9285838 ATTTACA
253 ATTTACA
* * * **
9285845 AAAATACCGTTCTCTTATAATTATTTGCTAGATAATCCCTCAAGAAATTATTAAAATGCCCTTTC
1 AAAATACCCTTCTCTTATAATTATTTGCTAAATAATCCCTCAAAAAATTACCAAAATGCCCTTTC
** * * * * *
9285910 TATTATATAATAAAAAATTGACATATGGTTAAATTTACTATTGTGACCTTATATCATAATTACAA
66 TATTATATAATAAAAAATTGACATACAGTCAAATTGACAATTATGACCTGATATCATAATTACAA
* * * * *
9285975 AAATACCTCTTCTTTTATAATTACTTACTCAATAATCCTCTATGAAATTACCAAAATGCCATTTT
131 AAATACCTCTTCTTTTATAATTACTTACTAAACAATCCTCTATAAAATTACAAAAATGACATTTT
* * * *
9286040 CATTATATGATAAGAAATTAACATGTGGCCAAATGGATTATTATGCCTTCATA
196 CATTACATGATAAGAAATTAACATATGGCCAAATGGACTATTATGCCCTCATA
9286093 CCTTTTCCAT
Statistics
Matches: 595, Mismatches: 127, Indels: 76
0.75 0.16 0.10
Matches are distributed among these distances:
250 2 0.00
251 16 0.03
252 31 0.05
253 14 0.02
254 39 0.07
255 17 0.03
256 100 0.17
257 74 0.12
258 25 0.04
259 257 0.43
260 20 0.03
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.37
Consensus pattern (259 bp):
AAAATACCCTTCTCTTATAATTATTTGCTAAATAATCCCTCAAAAAATTACCAAAATGCCCTTTC
TATTATATAATAAAAAATTGACATACAGTCAAATTGACAATTATGACCTGATATCATAATTACAA
AAATACCTCTTCTTTTATAATTACTTACTAAACAATCCTCTATAAAATTACAAAAATGACATTTT
CATTACATGATAAGAAATTAACATATGGCCAAATGGACTATTATGCCCTCATATCATATTTACA
Found at i:9286154 original size:60 final size:59
Alignment explanation
Indices: 9286036--9286154 Score: 168
Period size: 60 Copynumber: 2.0 Consensus size: 59
9286026 CAAAATGCCA
* * *
9286036 TTTTCATTATATGATAAGAAATTAACATGTGGCCAAATGGATTATTATGCCTTCATACC
1 TTTTCATTATATCATAAGAAATTAACATGTGACCAAATGGATTATTATCCCTTCATACC
* *
9286095 TTTTCCATTATGTCATAAGAAATTGACATGTGACCAAATGGATTATTATTCCCTT-ATACC
1 TTTT-CATTATATCATAAGAAATTAACATGTGACCAAATGGATTATTA-TCCCTTCATACC
9286155 ATAATTATAA
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
59 4 0.08
60 44 0.83
61 5 0.09
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.38
Consensus pattern (59 bp):
TTTTCATTATATCATAAGAAATTAACATGTGACCAAATGGATTATTATCCCTTCATACC
Found at i:9286369 original size:319 final size:319
Alignment explanation
Indices: 9285790--9286386 Score: 745
Period size: 319 Copynumber: 1.9 Consensus size: 319
9285780 CTATTGCATT
** * * *
9285790 ATAAGAAATTGACATATGGTCAAATGGACTATTATGCCCTCATATCATATTTACAAAAATACCGT
1 ATAAGAAATTGACATATGACCAAATGGACTATTATGCCCTCATACCATAATTACAAAAATACCAT
* * **
9285855 TCTCTTATAATTATTTGCTAGATAATCCCTCAAGAAATTATTAAAATGCCCTTTCTATTATATAA
66 TCTCTTATAATTATTTACTAAATAATCCCTCAAGAAATTACCAAAATGCCCTTTCTATTATATAA
* ** ** * * *
9285920 TAAAAAATTGACATATGGTTAAATTTACTATTGTGACCTTATATCATAATTACAAAAATACCTCT
131 TAAAAAATTGACATATAGCCAAATGGACTATTATGACCTTATACCATAATTACAAAAATACCCCT
* * * *
9285985 TCTTTTATAATTACTTACTCAATAATCCTCTATGAAATTACCAAAATGCCATTTTCATTATATGA
196 TATCTTATAATTACTTACTAAATAATCCTCTATGAAATTACCAAAATGCCATTTCCATTATATGA
9286050 TAAGAAATTAACATGTGGCCAAATGGATTATTATGCCTTCATACCTTTTCCATTATGTC
261 TAAGAAATTAACATGTGGCCAAATGGATTATTATGCCTTCATACCTTTTCCATTATGTC
* * * * *
9286109 ATAAGAAATTGACATGTGACCAAATGGATTATTATTCCCTTATACCATAATTATAAAAATACCAT
1 ATAAGAAATTGACATATGACCAAATGGACTATTATGCCCTCATACCATAATTACAAAAATACCAT
* * * * * *
9286174 TCTTTTATAATTATTTACTAAATTATCTCCT-ATGAAATTACCAATATGCCATTT-TCATTATTT
66 TCTCTTATAATTATTTACTAAATAATC-CCTCAAGAAATTACCAAAATGCCCTTTCT-ATTATAT
* * * * *
9286237 GATAAGAAATTGACATGTAGCCAAATGGACTATTATG-CCATTATCCCATTATTACAAAAATACC
129 AATAAAAAATTGACATATAGCCAAATGGACTATTATGACC-TTATACCATAATTACAAAAATACC
* * *
9286301 CCTTATCTTATTATTATTTACTAAATAATCC-CT-TAGCAAATTACCAAAATGCTATTTCCATTA
193 CCTTATCTTATAATTACTTACTAAATAATCCTCTAT-G-AAATTACCAAAATGCCATTTCCATTA
*
9286364 TATGATAAGAAATTAATATGTGG
256 TATGATAAGAAATTAACATGTGG
9286387 TTAAATTGAC
Statistics
Matches: 232, Mismatches: 41, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
317 1 0.00
318 6 0.03
319 222 0.96
320 3 0.01
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.38
Consensus pattern (319 bp):
ATAAGAAATTGACATATGACCAAATGGACTATTATGCCCTCATACCATAATTACAAAAATACCAT
TCTCTTATAATTATTTACTAAATAATCCCTCAAGAAATTACCAAAATGCCCTTTCTATTATATAA
TAAAAAATTGACATATAGCCAAATGGACTATTATGACCTTATACCATAATTACAAAAATACCCCT
TATCTTATAATTACTTACTAAATAATCCTCTATGAAATTACCAAAATGCCATTTCCATTATATGA
TAAGAAATTAACATGTGGCCAAATGGATTATTATGCCTTCATACCTTTTCCATTATGTC
Found at i:9286376 original size:130 final size:128
Alignment explanation
Indices: 9286096--9286681 Score: 578
Period size: 129 Copynumber: 4.6 Consensus size: 128
9286086 CTTCATACCT
* * * * *
9286096 TTTCCATTATGTCATAAGAAATTGACATGT-GACCAAATGGATTATTATTCCCTTATACCATAAT
1 TTTCCATTATATGATAAGAAATTGACATGTAG-TCAAATGGACTATTATGCCCTTATACCATAAT
* * * * *
9286160 TATAAAAATACCATTCTTTTATAATTATTTACTAAATTATCTCCTATGAAATTACCAATATGCCA
65 TACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATGCCA
* * * * * *
9286225 TTTTCATTATTTGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCATTATCCCATTATT
1 TTTCCATTATATGATAAGAAATTGACATGTAGTCAAATGGACTATTATGCCCTTATACCATAATT
* * *
9286290 ACAAAAATACCCCTTATCTTATTATTATTTACTAAATAATCCCT-TAGCAAATTACCAAAATGCT
66 ACAAAAATA-CCCTTCTCTTATAATTATTTACTAAATAATCCCTAT-G-AAATTACCAAAATGCC
9286354 A
128 A
* * * * * * ** * *
9286355 TTTCCATTATATGATAAGAAATTAATATGTGGTTAAATTGACAATTACACTCTTATATCATAATT
1 TTTCCATTATATGATAAGAAATTGACATGTAGTCAAATGGACTATTATGCCCTTATACCATAATT
* * * * *
9286420 ACAAAAATACATCTTCTCTTCTAATTATTTACTAAATAATCCCTATGAAGTTACGAAAAT-ACA
66 ACAAAAATAC-CCTTCTCTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATGCCA
* * * * *
9286483 CTTTTCATTATATGATAAGAAATTGATATGTGGTCAAATGGACTATCATGCCCTCATACCATAAT
1 -TTTCCATTATATGATAAGAAATTGACATGTAGTCAAATGGACTATTATGCCCTTATACCATAAT
* * * * * *
9286548 TATAAAAATACCCTTCTTTTATAATTATTTTCT-AATAATCCCT-TAAAAATTACTAAAATGCCC
65 TACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCCCTAT-GAAATTACCAAAATGCCA
* * *
9286611 TTT-CATT-TATGATAAGAAATTGAGA-GGAGGTCAAATGGACTATTATG-CCTTAATATCATAA
1 TTTCCATTATATGATAAGAAATTGACATGTA-GTCAAATGGACTATTATGCCCTT-ATACCATAA
*
9286672 TTACTAAAAT
64 TTACAAAAAT
9286682 GCCTTTTCCA
Statistics
Matches: 377, Mismatches: 69, Indels: 26
0.80 0.15 0.06
Matches are distributed among these distances:
124 4 0.01
125 50 0.13
126 5 0.01
127 24 0.06
128 21 0.06
129 142 0.38
130 130 0.34
131 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.37
Consensus pattern (128 bp):
TTTCCATTATATGATAAGAAATTGACATGTAGTCAAATGGACTATTATGCCCTTATACCATAATT
ACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATGCCA
Found at i:9286557 original size:259 final size:254
Alignment explanation
Indices: 9286147--9286631 Score: 634
Period size: 259 Copynumber: 1.9 Consensus size: 254
9286137 TTATTATTCC
* * *
9286147 CTTATACCATAATTATAAAAATACCATTCTTTTATAATTATTTACTAAATTATCTCCTATGAAAT
1 CTTATACCATAATTACAAAAATACCATTCTCTTATAATTATTTACTAAATAATCTCCTATGAAAT
* * * *
9286212 TACCAATATGCCATTTTCATTATTTGATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCA
66 TACCAAAATACCATTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATCATGCCA
* * * * *
9286277 TTATCCCATTATTACAAAAATACCCCTTATCTTATTATTATTTACTAAATAATCCCTTAGCAAAT
131 TCATACCATAATTACAAAAATA-CCCTTATCTTATAATTATTTACT-AATAATCCCTTA-AAAAT
*
9286342 TACCAAAATGCTATTTCCATTATATGATAAGAAATTAATATGTGGTTAAATTGACAATTACACT
193 TACCAAAATGCCATTT-CATT-TATGATAAGAAATTAATATGTGGTTAAATTGACAATTACACT
* *
9286406 CTTATATCATAATTACAAAAATA-CATCTTCTCTTCTAATTATTTACTAAATAATC-CCTATGAA
1 CTTATACCATAATTACAAAAATACCA--TTCTCTTATAATTATTTACTAAATAATCTCCTATGAA
* * * * *
9286469 GTTACGAAAATA-CACTTTTCATTATATGATAAGAAATTGATATGTGGTCAAATGGACTATCATG
64 ATTACCAAAATACCA-TTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATCATG
* * * * *
9286533 CCCTCATACCATAATTATAAAAATACCCTTCTTTTATAATTATTTTCTAATAATCCCTTAAAAAT
128 CCATCATACCATAATTACAAAAATACCCTTATCTTATAATTATTTACTAATAATCCCTTAAAAAT
* *
9286598 TACTAAAATGCCCTTTCATTTATGATAAGAAATT
193 TACCAAAATGCCATTTCATTTATGATAAGAAATT
9286632 GAGAGGAGGT
Statistics
Matches: 196, Mismatches: 27, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
254 14 0.07
255 4 0.02
256 17 0.09
257 12 0.06
258 23 0.12
259 101 0.52
260 25 0.13
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (254 bp):
CTTATACCATAATTACAAAAATACCATTCTCTTATAATTATTTACTAAATAATCTCCTATGAAAT
TACCAAAATACCATTTTCATTATATGATAAGAAATTGACATGTAGCCAAATGGACTATCATGCCA
TCATACCATAATTACAAAAATACCCTTATCTTATAATTATTTACTAATAATCCCTTAAAAATTAC
CAAAATGCCATTTCATTTATGATAAGAAATTAATATGTGGTTAAATTGACAATTACACT
Found at i:9286723 original size:77 final size:75
Alignment explanation
Indices: 9286595--9286764 Score: 182
Period size: 77 Copynumber: 2.2 Consensus size: 75
9286585 ATCCCTTAAA
* * *
9286595 AATTACTAAAATGCCCTTTCATTTATGATAAGAAATTGAGAGGAGGTCAAATGGACTATTATGCC
1 AATTACTAAAATGCCCTTTCATTTATGATAAAAAATTGACAGGAGGCCAAATGGACTATTATGCC
* *
9286660 TTAATATCAT
66 CTAATACCAT
* * * * *
9286670 AATTACTAAAATGCCTTTTCCATTTTATGATAAAAAATT-ATCATGTGGCCAAATGGAGTGTTAT
1 AATTACTAAAATGCCCTTT-CA-TTTATGATAAAAAATTGA-CAGGAGGCCAAATGGACTATTAT
*
9286734 GCCCTCATACCAT
63 GCCCTAATACCAT
*
9286747 AATTA-TGAAAATACCCTT
1 AATTACT-AAAATGCCCTT
9286765 CTCTTAGAAT
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
75 18 0.23
76 4 0.05
77 56 0.72
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (75 bp):
AATTACTAAAATGCCCTTTCATTTATGATAAAAAATTGACAGGAGGCCAAATGGACTATTATGCC
CTAATACCAT
Found at i:9287599 original size:34 final size:34
Alignment explanation
Indices: 9287526--9287617 Score: 94
Period size: 34 Copynumber: 2.7 Consensus size: 34
9287516 TTCTTGAATT
* * * **
9287526 CCCATTTTTAAGAAGACTTGGGGCCTTTTAGATG
1 CCCATTTTTAAGAAGACTTGAGGCCTTTCAAAAA
*
9287560 CCCATTTTTTAGAAGACTTGAGGCCTTTCAAAAA
1 CCCATTTTTAAGAAGACTTGAGGCCTTTCAAAAA
* * * *
9287594 TCCATTTTCAAAAAGACTTAAGGC
1 CCCATTTTTAAGAAGACTTGAGGC
9287618 TTCTCGAAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (34 bp):
CCCATTTTTAAGAAGACTTGAGGCCTTTCAAAAA
Found at i:9288888 original size:19 final size:20
Alignment explanation
Indices: 9288845--9288888 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
9288835 TAGGTATGTA
9288845 TTTATAATTATTTAAAACAT
1 TTTATAATTATTTAAAACAT
* * *
9288865 ATTATAA-TATTTAATATAT
1 TTTATAATTATTTAAAACAT
9288884 TTTAT
1 TTTAT
9288889 TGGTTTTAGG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTATAATTATTTAAAACAT
Found at i:9290321 original size:9 final size:9
Alignment explanation
Indices: 9290287--9290323 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
9290277 TTATTCTCTT
9290287 TTTTAGTTC
1 TTTTAGTTC
9290296 TTTTAAG-TC
1 TTTT-AGTTC
9290305 TTTT-GTTC
1 TTTTAGTTC
9290313 TTTTAGTTC
1 TTTTAGTTC
9290322 TT
1 TT
9290324 GTTATTGGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
7 1 0.04
8 6 0.24
9 16 0.64
10 2 0.08
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.68
Consensus pattern (9 bp):
TTTTAGTTC
Found at i:9293387 original size:2 final size:2
Alignment explanation
Indices: 9293380--9293451 Score: 108
Period size: 2 Copynumber: 36.0 Consensus size: 2
9293370 GTGCTTCCTT
*
9293380 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
9293422 TG TA TG TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9293452 GCACTGGGCA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9293560 original size:11 final size:11
Alignment explanation
Indices: 9293544--9293568 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9293534 GTTCGTTGTC
9293544 CTTTTTTTTTT
1 CTTTTTTTTTT
9293555 CTTTTTTTTTT
1 CTTTTTTTTTT
9293566 CTT
1 CTT
9293569 ACGTTGACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
CTTTTTTTTTT
Found at i:9297214 original size:5 final size:5
Alignment explanation
Indices: 9297200--9297244 Score: 58
Period size: 5 Copynumber: 9.4 Consensus size: 5
9297190 CACATTGTTT
* *
9297200 TTATA ATATA TTATA TTATA TTATA TTACA TTATA -TATA -TATA TT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TT
9297245 CGGAAGTGAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 8 0.23
5 27 0.77
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (5 bp):
TTATA
Found at i:9300484 original size:3 final size:3
Alignment explanation
Indices: 9300476--9300508 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
9300466 TTGCAGGTCT
*
9300476 TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9300509 AGAAAAACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9303067 original size:21 final size:20
Alignment explanation
Indices: 9303025--9303067 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
9303015 TGAATTTTTA
*
9303025 GAAAAAGAAAGTTTTGATTT
1 GAAAAAGAAAGTTTTGAATT
9303045 GAAAAAGAAA-TTTGATGAATT
1 GAAAAAGAAAGTTT--TGAATT
9303066 GA
1 GA
9303068 TGAATGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 3 0.15
20 10 0.50
21 7 0.35
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.30
Consensus pattern (20 bp):
GAAAAAGAAAGTTTTGAATT
Found at i:9305813 original size:16 final size:16
Alignment explanation
Indices: 9305789--9305823 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
9305779 CTTGATGACA
*
9305789 TATCTTTAACAATTGG
1 TATCCTTAACAATTGG
9305805 TATCCTTAACAATTGG
1 TATCCTTAACAATTGG
9305821 TAT
1 TAT
9305824 GAACTTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (16 bp):
TATCCTTAACAATTGG
Found at i:9307415 original size:20 final size:21
Alignment explanation
Indices: 9307392--9307442 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
9307382 CCCCACATAG
*
9307392 GGGATCGATCACC-CAGGCAA
1 GGGATCGATCACCTCAAGCAA
*
9307412 GGGATCGATCTCCTCAAGCAA
1 GGGATCGATCACCTCAAGCAA
9307433 GGGATCGATC
1 GGGATCGATC
9307443 GGTTCTGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.27, C:0.27, G:0.29, T:0.16
Consensus pattern (21 bp):
GGGATCGATCACCTCAAGCAA
Found at i:9320840 original size:19 final size:16
Alignment explanation
Indices: 9320805--9320852 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 16
9320795 GTTAGTAGGA
*
9320805 TTTTATAAAAATTATT
1 TTTTTTAAAAATTATT
9320821 TCTTTTCTAAAAATTAATT
1 T-TTTT-TAAAAATT-ATT
9320840 TTTATTTAAAAAT
1 TTT-TTTAAAAAT
9320853 CATAAGGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 1 0.04
17 3 0.11
18 17 0.63
19 6 0.22
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (16 bp):
TTTTTTAAAAATTATT
Found at i:9322226 original size:19 final size:21
Alignment explanation
Indices: 9322202--9322249 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
9322192 AGAAAAAATT
*
9322202 TAAAAATTCTC-ATCTACAA-
1 TAAAAATTCACAATCTACAAC
*
9322221 TAAAAATTCACAATTTACAAC
1 TAAAAATTCACAATCTACAAC
9322242 TAAAAATT
1 TAAAAATT
9322250 TACACATTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 10 0.40
20 7 0.28
21 8 0.32
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (21 bp):
TAAAAATTCACAATCTACAAC
Found at i:9322442 original size:18 final size:19
Alignment explanation
Indices: 9322416--9322454 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
9322406 AAGTTTAATG
*
9322416 TCTACAAAAATTTCAAGAT
1 TCTACAAAAAATTCAAGAT
9322435 TCTA-AAAAAATTCAAGAT
1 TCTACAAAAAATTCAAGAT
9322453 TC
1 TC
9322455 GCAAAAGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (19 bp):
TCTACAAAAAATTCAAGAT
Found at i:9322460 original size:18 final size:18
Alignment explanation
Indices: 9322420--9322460 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
9322410 TTAATGTCTA
* *
9322420 CAAAAATTTCAAGATTCT
1 CAAAAAATTCAAGATTCG
*
9322438 AAAAAAATTCAAGATTCG
1 CAAAAAATTCAAGATTCG
9322456 CAAAA
1 CAAAA
9322461 GTTCAAAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.15, G:0.07, T:0.24
Consensus pattern (18 bp):
CAAAAAATTCAAGATTCG
Found at i:9322626 original size:18 final size:18
Alignment explanation
Indices: 9322605--9322643 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
9322595 GCGATTCAAG
*
9322605 ATTTGTAAAAATTCAAAA
1 ATTTGTAAAAATTAAAAA
*
9322623 ATTTGTAAAAGTTAAAAA
1 ATTTGTAAAAATTAAAAA
9322641 ATT
1 ATT
9322644 CACAAGTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (18 bp):
ATTTGTAAAAATTAAAAA
Found at i:9322688 original size:17 final size:18
Alignment explanation
Indices: 9322651--9322749 Score: 80
Period size: 18 Copynumber: 5.6 Consensus size: 18
9322641 ATTCACAAGT
*
9322651 TTCAAGATTTGCAAGTGA
1 TTCAAGATTCGCAAGTGA
*
9322669 TTCAAGATTCGTAA-TGA
1 TTCAAGATTCGCAAGTGA
**
9322686 TTCAAAGATTCGCAAAAG-
1 TTC-AAGATTCGCAAGTGA
*
9322704 TTCAAAGATTTCACAAGT--
1 TTC-AAGA-TTCGCAAGTGA
* *
9322722 TTCAAGATTTGCAAGTAA
1 TTCAAGATTCGCAAGTGA
9322740 TTCAAGATTC
1 TTCAAGATTC
9322750 ACAAAAATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
16 7 0.11
17 10 0.15
18 42 0.64
19 7 0.11
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32
Consensus pattern (18 bp):
TTCAAGATTCGCAAGTGA
Found at i:9322694 original size:36 final size:34
Alignment explanation
Indices: 9322641--9322753 Score: 111
Period size: 36 Copynumber: 3.2 Consensus size: 34
9322631 AAGTTAAAAA
*
9322641 ATTCACAAGTTTCAAGATTTGCAAGTGATTCAAG
1 ATTCACAAGATTCAAGATTTGCAAGTGATTCAAG
** * **
9322675 ATTCGTAATGATTCAAAGATTCGCAAAAG-TTCAAAG
1 ATTCACAA-GATTC-AAGATTTGCAAGTGATTC-AAG
* *
9322711 ATTTCACAAGTTTCAAGATTTGCAAGTAATTCAAG
1 A-TTCACAAGATTCAAGATTTGCAAGTGATTCAAG
9322746 ATTCACAA
1 ATTCACAA
9322754 AAATTTAAAA
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
34 13 0.21
35 21 0.34
36 22 0.36
37 5 0.08
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (34 bp):
ATTCACAAGATTCAAGATTTGCAAGTGATTCAAG
Found at i:9322737 original size:71 final size:70
Alignment explanation
Indices: 9322597--9322763 Score: 217
Period size: 71 Copynumber: 2.4 Consensus size: 70
9322587 ATTCGTAAGC
* * *
9322597 GATTCAAGATTTGTAAAAATTCAAAAATTTGTAAAAGTTAAAAAATTCACAAGTTTCAAGATTTG
1 GATTCAAGATTCGTAAAAATTCAAAAATTCGCAAAAGTTAAAAAATTCACAAGTTTCAAGATTTG
9322662 CAAGT
66 CAAGT
** * * *
9322667 GATTCAAGATTCGTAATGATTCAAAGATTCGCAAAAGTTCAAAGATTTCACAAGTTTCAAGATTT
1 GATTCAAGATTCGTAAAAATTCAAAAATTCGCAAAAGTT-AAAAAATTCACAAGTTTCAAGATTT
9322732 GCAAGT
65 GCAAGT
* ** *
9322738 AATTCAAGATTCACAAAAATTTAAAA
1 GATTCAAGATTCGTAAAAATTCAAAA
9322764 TTCAAATATT
Statistics
Matches: 81, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
70 33 0.41
71 48 0.59
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.31
Consensus pattern (70 bp):
GATTCAAGATTCGTAAAAATTCAAAAATTCGCAAAAGTTAAAAAATTCACAAGTTTCAAGATTTG
CAAGT
Found at i:9323959 original size:25 final size:25
Alignment explanation
Indices: 9323925--9323992 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
9323915 TGACTTCTAT
* *
9323925 TTTAGGCCTTCGTTGCCAAACCTTG
1 TTTAGGCCTTCATTGCCAAACCCTG
* *
9323950 TTTAGGCCTTCATTGTCGAACCCTG
1 TTTAGGCCTTCATTGCCAAACCCTG
* *
9323975 TTAAGGCCTTCATAGCCA
1 TTTAGGCCTTCATTGCCA
9323993 TTCTATTTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (25 bp):
TTTAGGCCTTCATTGCCAAACCCTG
Found at i:9328001 original size:28 final size:28
Alignment explanation
Indices: 9327956--9328023 Score: 93
Period size: 28 Copynumber: 2.5 Consensus size: 28
9327946 GAGTGTAATG
9327956 TTTAT-AATGCAATACATGAAAGCAATA
1 TTTATGAATGCAATACATGAAAGCAATA
* * *
9327983 TTTATGAATGCAATGCATGAACGCAATG
1 TTTATGAATGCAATACATGAAAGCAATA
*
9328011 TTAATGAATGCAA
1 TTTATGAATGCAA
9328024 CTCTAATTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 5 0.14
28 31 0.86
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (28 bp):
TTTATGAATGCAATACATGAAAGCAATA
Found at i:9331771 original size:29 final size:29
Alignment explanation
Indices: 9331728--9331793 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
9331718 TGGATGGATG
*
9331728 AATAC-ATATATTAGTGATGCTAAATTAA
1 AATACAATATATTAGTGATACTAAATTAA
* * *
9331756 AATACAATATGTTAGTGATACTAGATTAG
1 AATACAATATATTAGTGATACTAAATTAA
9331785 AATACAATA
1 AATACAATA
9331794 CACAACATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 5 0.15
29 28 0.85
ACGTcount: A:0.47, C:0.08, G:0.12, T:0.33
Consensus pattern (29 bp):
AATACAATATATTAGTGATACTAAATTAA
Found at i:9332142 original size:12 final size:12
Alignment explanation
Indices: 9332125--9332151 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9332115 ATAGATATAA
9332125 AAATGAATAAAT
1 AAATGAATAAAT
9332137 AAATGAATAAAT
1 AAATGAATAAAT
9332149 AAA
1 AAA
9332152 ATACAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.22
Consensus pattern (12 bp):
AAATGAATAAAT
Found at i:9332620 original size:37 final size:37
Alignment explanation
Indices: 9332579--9332653 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
9332569 TATCCATAAA
9332579 TTACTCCAATATGTTGATAATAACTTAAGAACATCCT
1 TTACTCCAATATGTTGATAATAACTTAAGAACATCCT
* *
9332616 TTACTCCTATATGTTGATAATAATTTAAGAACATCCT
1 TTACTCCAATATGTTGATAATAACTTAAGAACATCCT
9332653 T
1 T
9332654 CACCTCATGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (37 bp):
TTACTCCAATATGTTGATAATAACTTAAGAACATCCT
Found at i:9333267 original size:123 final size:123
Alignment explanation
Indices: 9333044--9333267 Score: 269
Period size: 123 Copynumber: 1.8 Consensus size: 123
9333034 TAAAAATCAT
9333044 AAGGTTTTCTAATATATTAATAAAACCTTATCTTAAAAATCAAATTGACCTCCAATATGTTGGTA
1 AAGGTTTTCTAATATATTAATAAAACCTTATCTTAAAAATCAAATTGACCTCCAATATGTTGGTA
***
9333109 AGGCTTTATTGAAAACTATTTTTTTCTTTTGAAATTGGTTTTTTTATAAAAAATTAAC
66 AGGCTTTATTGAAAACTATTTTTTTCTTAAAAAATTGGTTTTTTTATAAAAAATTAAC
** * * * **
9333167 AAGGTTCTTC-AATATATTGGTAAAACTTTATGTTAAAAATCAAATTG-CTTTTTAATATGTTGG
1 AAGGTT-TTCTAATATATTAATAAAACCTTATCTTAAAAATCAAATTGAC-CTCCAATATGTTGG
*
9333230 TAAGGCTTTTTATT-TAAA-TATTTATTTT-TTAAAAAATT
64 TAAGGC--TTTATTGAAAACTATTT-TTTTCTTAAAAAATT
9333268 TGAACTTTCT
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
122 1 0.01
123 68 0.80
124 10 0.12
125 6 0.07
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.45
Consensus pattern (123 bp):
AAGGTTTTCTAATATATTAATAAAACCTTATCTTAAAAATCAAATTGACCTCCAATATGTTGGTA
AGGCTTTATTGAAAACTATTTTTTTCTTAAAAAATTGGTTTTTTTATAAAAAATTAAC
Found at i:9333379 original size:4 final size:4
Alignment explanation
Indices: 9333372--9333413 Score: 50
Period size: 4 Copynumber: 10.2 Consensus size: 4
9333362 ATATATAGTC
*
9333372 AAAT AAAT AAAAT AAAT -ATT AAAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT -AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT A
9333414 GACAATTATG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 2 0.06
4 25 0.76
5 6 0.18
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:9333408 original size:12 final size:13
Alignment explanation
Indices: 9333372--9333413 Score: 61
Period size: 12 Copynumber: 3.4 Consensus size: 13
9333362 ATATATAGTC
9333372 AAATAAATAAAAT
1 AAATAAATAAAAT
*
9333385 AAAT-ATTAAAAT
1 AAATAAATAAAAT
9333397 AAATAAAT-AAAT
1 AAATAAATAAAAT
9333409 AAATA
1 AAATA
9333414 GACAATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 20 0.77
13 6 0.23
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:9337051 original size:7 final size:7
Alignment explanation
Indices: 9337048--9337132 Score: 55
Period size: 7 Copynumber: 11.9 Consensus size: 7
9337038 TCCTATATTA
9337048 TATATAT
1 TATATAT
*
9337055 TCTATAT
1 TATATAT
*
9337062 TATATAG
1 TATATAT
*
9337069 AAT-TAT
1 TATATAT
*
9337075 CATATACT
1 TATATA-T
*
9337083 TTTATATT
1 TATATA-T
9337091 ATATATAT
1 -TATATAT
9337099 TATATAT
1 TATATAT
*
9337106 TTTATAT
1 TATATAT
*
9337113 TCTATAT
1 TATATAT
*
9337120 TCTATAT
1 TATATAT
*
9337127 TTTATA
1 TATATA
9337133 GAATTATTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
6 4 0.06
7 46 0.74
8 7 0.11
9 5 0.08
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.56
Consensus pattern (7 bp):
TATATAT
Found at i:9337106 original size:16 final size:16
Alignment explanation
Indices: 9337031--9337132 Score: 74
Period size: 16 Copynumber: 6.8 Consensus size: 16
9337021 TATAAGTACA
**
9337031 ATATATATCCTATATT
1 ATATATATTATATATT
*
9337047 ATATATATTCTATATT
1 ATATATATTATATATT
* *
9337063 ATATAGA--AT-TATC
1 ATATATATTATATATT
9337076 ATATACT-TT-TATATT
1 ATATA-TATTATATATT
9337091 ATATATATTATATATT
1 ATATATATTATATATT
*
9337107 -T-TATATTCTATATT
1 ATATATATTATATATT
* *
9337121 CTATATTTTATA
1 ATATATATTATA
9337133 GAATTATTTT
Statistics
Matches: 69, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
13 8 0.12
14 15 0.22
15 12 0.17
16 34 0.49
ACGTcount: A:0.37, C:0.07, G:0.01, T:0.55
Consensus pattern (16 bp):
ATATATATTATATATT
Found at i:9340576 original size:22 final size:22
Alignment explanation
Indices: 9340551--9340601 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
9340541 GTCTACATGT
9340551 ACATATCTTATAAGTACAATGC
1 ACATATCTTATAAGTACAATGC
* *
9340573 ACATATCTTATAAGTATAATGT
1 ACATATCTTATAAGTACAATGC
9340595 ACATATC
1 ACATATC
9340602 ATGTAACTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (22 bp):
ACATATCTTATAAGTACAATGC
Found at i:9340621 original size:44 final size:43
Alignment explanation
Indices: 9340547--9340638 Score: 98
Period size: 44 Copynumber: 2.1 Consensus size: 43
9340537 CTATGTCTAC
* *
9340547 ATGTACATATCTTATAAGTACAATGCACATAT-CTTATAAGTATA
1 ATGTACATATCATATAACTACAATGCACATATGC-TATAAG-ATA
* * *
9340591 ATGTACATATCATGTAACTA-ATATGTACATATGCTATAAGATT
1 ATGTACATATCATATAACTACA-ATGCACATATGCTATAAGATA
9340634 ATGTA
1 ATGTA
9340639 TATAAACTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
43 8 0.20
44 32 0.78
45 1 0.02
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (43 bp):
ATGTACATATCATATAACTACAATGCACATATGCTATAAGATA
Found at i:9340638 original size:21 final size:21
Alignment explanation
Indices: 9340612--9340652 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9340602 ATGTAACTAA
**
9340612 TATGTACATATGCTATAAGAT
1 TATGTACATAAACTATAAGAT
*
9340633 TATGTATATAAACTATAAGA
1 TATGTACATAAACTATAAGA
9340653 ATACAAACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (21 bp):
TATGTACATAAACTATAAGAT
Found at i:9341012 original size:21 final size:22
Alignment explanation
Indices: 9340988--9341034 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
9340978 CAAATAAAAA
*
9340988 AAATCCTAATATGACAT-AAGC
1 AAATCCAAATATGACATAAAGC
*
9341009 AAATCCAAATTTGACATCAAAGC
1 AAATCCAAATATGACAT-AAAGC
9341032 AAA
1 AAA
9341035 ACAAATCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 15 0.68
23 7 0.32
ACGTcount: A:0.51, C:0.19, G:0.09, T:0.21
Consensus pattern (22 bp):
AAATCCAAATATGACATAAAGC
Found at i:9341449 original size:144 final size:144
Alignment explanation
Indices: 9341188--9341625 Score: 822
Period size: 144 Copynumber: 3.0 Consensus size: 144
9341178 ACCCTATGTA
*
9341188 CCTAAACTCAATGTTAAATAGTGATAAGTCTATATGCCAATCACAATACACCTATGCTCAATGCT
1 CCTAAACTCAATGTTAAATAGTGATAGGTCTATATGCCAATCACAATACACCTATGCTCAATGCT
9341253 TTACACCAATCACAATATACAACTATTAACTTAATTTAACAATTCCATAAACCCAAAATTTTAAA
66 TTACACCAATCACAATATACAACTATTAACTTAATTTAACAATTCCATAAACCCAAAATTTTAAA
9341318 TTTTATAATAATAC
131 TTTTATAATAATAC
*
9341332 CCTAAACTCAATGTTAAATAGTGATAGGTCTATATGCCAATCGCAATACACCTATGCTCAATGCT
1 CCTAAACTCAATGTTAAATAGTGATAGGTCTATATGCCAATCACAATACACCTATGCTCAATGCT
* * *
9341397 TTACACCAATCACAGTATACAACTATTAACTTAATTTAACAATCCCACAAACCCAAAATTTTAAA
66 TTACACCAATCACAATATACAACTATTAACTTAATTTAACAATTCCATAAACCCAAAATTTTAAA
9341462 TTTTATAATAATAC
131 TTTTATAATAATAC
*
9341476 CCTAAACTCAATGTTAAATAGTGATAGGTCTATATGCCAATCACAATACACCTATGCTCAAAGCT
1 CCTAAACTCAATGTTAAATAGTGATAGGTCTATATGCCAATCACAATACACCTATGCTCAATGCT
9341541 TTACACCAATCACAATATACAACTATTAACTTAATTTAACAATTCCATAAACCCAAAATTTTAAA
66 TTACACCAATCACAATATACAACTATTAACTTAATTTAACAATTCCATAAACCCAAAATTTTAAA
9341606 TTTTATAATAATAC
131 TTTTATAATAATAC
9341620 CCTAAA
1 CCTAAA
9341626 TCCAATTAAC
Statistics
Matches: 284, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 284 1.00
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (144 bp):
CCTAAACTCAATGTTAAATAGTGATAGGTCTATATGCCAATCACAATACACCTATGCTCAATGCT
TTACACCAATCACAATATACAACTATTAACTTAATTTAACAATTCCATAAACCCAAAATTTTAAA
TTTTATAATAATAC
Found at i:9342438 original size:20 final size:20
Alignment explanation
Indices: 9342413--9342451 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
9342403 AAATGCCCTG
*
9342413 AAGTCAGAATTGGTCAAATA
1 AAGTCAGAATTGATCAAATA
9342433 AAGTCAGAATTGATCAAAT
1 AAGTCAGAATTGATCAAAT
9342452 TGGTCACAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.10, G:0.18, T:0.26
Consensus pattern (20 bp):
AAGTCAGAATTGATCAAATA
Found at i:9342749 original size:92 final size:93
Alignment explanation
Indices: 9342592--9342780 Score: 344
Period size: 92 Copynumber: 2.0 Consensus size: 93
9342582 TATCAACATA
9342592 CATTTTAGGGATATTTTTGTAATTTGACATTCTTGAAGTCAAATTTTCATGAAAATTTCTAGATC
1 CATTTTAGGGATATTTTTGTAATTTGACATTCTTGAAGTCAAATTTTCATGAAAATTTCTAGATC
9342657 AAAATTGAA-TTTTTAAAAATTTTTATG
66 AAAATTGAATTTTTTAAAAATTTTTATG
*
9342684 CATTTTAGGGATATTTTTGTAATTTGACCTTCTTGAAGTCAAATTTTCATGAAAATTTCTAGATC
1 CATTTTAGGGATATTTTTGTAATTTGACATTCTTGAAGTCAAATTTTCATGAAAATTTCTAGATC
* *
9342749 AAAATTGAATTTTTTGAAATTTTTTATG
66 AAAATTGAATTTTTTAAAAATTTTTATG
9342777 CATT
1 CATT
9342781 AAAAAATCAA
Statistics
Matches: 93, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 73 0.78
93 20 0.22
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (93 bp):
CATTTTAGGGATATTTTTGTAATTTGACATTCTTGAAGTCAAATTTTCATGAAAATTTCTAGATC
AAAATTGAATTTTTTAAAAATTTTTATG
Found at i:9343767 original size:26 final size:27
Alignment explanation
Indices: 9343717--9343768 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
9343707 TCATAAAAAT
*
9343717 TGAAGTGGATTATTAAAGGCATTTTTA
1 TGAAGTGGATAATTAAAGGCATTTTTA
* *
9343744 TGAAGT-GATAATTCAATGCATTTTT
1 TGAAGTGGATAATTAAAGGCATTTTT
9343769 GACCAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (27 bp):
TGAAGTGGATAATTAAAGGCATTTTTA
Found at i:9344184 original size:62 final size:61
Alignment explanation
Indices: 9344018--9344234 Score: 150
Period size: 62 Copynumber: 3.5 Consensus size: 61
9344008 TTCAAGTTGT
* * * * * * * *
9344018 TTTTTGGGCAAAAATGCCTTGAATAATCCCTAAAAAAAATTTGGAGGGGATTATTCTAGGCG
1 TTTTTGGCCAAAAATGCCTTCAATAATCCCT-AAAAAATTTTGGAAGGAATTATTCAAGACA
** * * ** * * ** * *
9344080 TTTTTTACTAGAAACACCTTGAATAAT-CCTATTCAATTTTTTGTAA-GAGATTATTTAAGACA
1 TTTTTGGCCAAAAATGCCTTCAATAATCCCTA--AAAAATTTTGGAAGGA-ATTATTCAAGACA
* * *
9344142 TTTTCTGGCCAACAATGCCTTCAATAATCCCTAAAAAATTTTGGAAGGAATTATTCAAGGCG
1 TTTT-TGGCCAAAAATGCCTTCAATAATCCCTAAAAAATTTTGGAAGGAATTATTCAAGACA
* *
9344204 TTTTTGGCTAAAAATGCCTTGAATAATCCCT
1 TTTTTGGCCAAAAATGCCTTCAATAATCCCT
9344235 TAGTAAAAAA
Statistics
Matches: 113, Mismatches: 36, Indels: 13
0.70 0.22 0.08
Matches are distributed among these distances:
60 1 0.01
61 28 0.25
62 63 0.56
63 17 0.15
64 4 0.04
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Consensus pattern (61 bp):
TTTTTGGCCAAAAATGCCTTCAATAATCCCTAAAAAATTTTGGAAGGAATTATTCAAGACA
Found at i:9346049 original size:7 final size:7
Alignment explanation
Indices: 9346015--9346123 Score: 58
Period size: 7 Copynumber: 15.4 Consensus size: 7
9346005 TTTTATGAAG
9346015 CCCTAAA
1 CCCTAAA
*
9346022 CCCCAAA
1 CCCTAAA
* *
9346029 CCTTAGA
1 CCCTAAA
* *
9346036 TCTTAAA
1 CCCTAAA
9346043 CCCTAAA
1 CCCTAAA
*
9346050 CCCCAAA
1 CCCTAAA
*
9346057 CCCCAAA
1 CCCTAAA
*
9346064 ACCTAAA
1 CCCTAAA
*
9346071 CCCCAAA
1 CCCTAAA
* *
9346078 TCTTAAA
1 CCCTAAA
*
9346085 -CATCAAA
1 CCCT-AAA
*
9346092 ACCTAAA
1 CCCTAAA
9346099 CCCTAAAA
1 CCCT-AAA
* *
9346107 CTCTAAG
1 CCCTAAA
9346114 CCCTAAA
1 CCCTAAA
9346121 CCC
1 CCC
9346124 AATCTAGACC
Statistics
Matches: 76, Mismatches: 23, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
6 2 0.03
7 66 0.87
8 8 0.11
ACGTcount: A:0.43, C:0.39, G:0.02, T:0.16
Consensus pattern (7 bp):
CCCTAAA
Done.