Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 44 of 130
Found at i:10421257 original size:37 final size:38
Alignment explanation
Indices: 10421216--10421303 Score: 124
Period size: 38 Copynumber: 2.3 Consensus size: 38
10421206 GAGTTTTGAT
* *
10421216 TTTAAGGTTTTGAGGGTTTAAGGTTTT-GATTTTAGGG
1 TTTAAAGTTTTGAGAGTTTAAGGTTTTGGATTTTAGGG
* **
10421253 TTTAAAGTTTTGAGATTTTGGGGTTTTGGATTTTAGGG
1 TTTAAAGTTTTGAGAGTTTAAGGTTTTGGATTTTAGGG
10421291 TTTAAAGTTTTGA
1 TTTAAAGTTTTGA
10421304 TTTTTGAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 22 0.49
38 23 0.51
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (38 bp):
TTTAAAGTTTTGAGAGTTTAAGGTTTTGGATTTTAGGG
Found at i:10421286 original size:15 final size:16
Alignment explanation
Indices: 10421259--10421293 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
10421249 AGGGTTTAAA
*
10421259 GTTTTGAGATTTTGGG
1 GTTTTGAGATTTTAGG
10421275 GTTTTG-GATTTTAGG
1 GTTTTGAGATTTTAGG
10421290 GTTT
1 GTTT
10421294 AAAGTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.11, C:0.00, G:0.34, T:0.54
Consensus pattern (16 bp):
GTTTTGAGATTTTAGG
Found at i:10421789 original size:3 final size:3
Alignment explanation
Indices: 10421774--10421813 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
10421764 TTGTTTTTAT
*
10421774 TTA TTA TTC TTA TTA TTA TTA TTAA TTA TTA TTA -TA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA T
10421814 AACAAATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:10421801 original size:22 final size:21
Alignment explanation
Indices: 10421770--10421813 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
10421760 CACTTTGTTT
* *
10421770 TTATTTATTATTCTTATTATTA
1 TTATTAATTATTATTA-TATTA
10421792 TTATTAATTATTATTATATTA
1 TTATTAATTATTATTATATTA
10421813 T
1 T
10421814 AACAAATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATTAATTATTATTATATTA
Found at i:10423486 original size:15 final size:16
Alignment explanation
Indices: 10423466--10423503 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
10423456 CCTATGTCAT
10423466 ATATAATTTTTA-ATG
1 ATATAATTTTTATATG
*
10423481 ATATAAATTTTATATG
1 ATATAATTTTTATATG
10423497 ATA-AATT
1 ATATAATT
10423504 GTAGATTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (16 bp):
ATATAATTTTTATATG
Found at i:10424553 original size:18 final size:18
Alignment explanation
Indices: 10424530--10424792 Score: 156
Period size: 18 Copynumber: 13.6 Consensus size: 18
10424520 AATTTTACTT
10424530 ATAAATAATATTATATTA
1 ATAAATAATATTATATTA
10424548 ATAAATAAATTATATTATATTA
1 ATAAAT--A--ATATTATATTA
* * *
10424570 ATAAATTATATAATACTAA
1 ATAAATAATATTATA-TTA
* *
10424589 ATAATATTATAATATATTA
1 ATAA-ATAATATTATATTA
*
10424608 ATAAATAATATCATATTA
1 ATAAATAATATTATATTA
10424626 ATAAATAATA--ATATTA
1 ATAAATAATATTATATTA
* *
10424642 TATAAAATAAATAATATAATA
1 -AT-AAAT-AATATTATATTA
*
10424663 ATAAATATTATTA-ATTTA
1 ATAAATAATATTATA-TTA
* *
10424681 ATTAATAAATATTATAATA
1 ATAAAT-AATATTATATTA
*
10424700 ATATATGAATAATTAATATATA
1 ATAAAT-AAT-ATT-ATAT-TA
10424722 ATATACTATTAATATGATATATTA
1 ATA-A--A-TAATAT--TATATTA
* *
10424746 ATAAATATTATTA-ATAA
1 ATAAATAATATTATATTA
* *
10424763 ATAATATATTAATATATTA
1 ATAA-ATAATATTATATTA
10424782 ATAAATAATAT
1 ATAAATAATAT
10424793 AAAGAATAAT
Statistics
Matches: 193, Mismatches: 27, Indels: 50
0.71 0.10 0.19
Matches are distributed among these distances:
16 6 0.03
17 10 0.05
18 65 0.34
19 42 0.22
20 21 0.11
21 9 0.05
22 22 0.11
23 1 0.01
24 7 0.04
25 8 0.04
26 2 0.01
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (18 bp):
ATAAATAATATTATATTA
Found at i:10424589 original size:15 final size:16
Alignment explanation
Indices: 10424533--10424677 Score: 99
Period size: 15 Copynumber: 9.0 Consensus size: 16
10424523 TTTACTTATA
10424533 AATAATATTATATTAAT
1 AATAA-ATTATATTAAT
10424550 AAATAAATTATATTATATT
1 -AATAAATTATATTA-A-T
10424569 AATAAATTATA-TAAT
1 AATAAATTATATTAAT
* *
10424584 ACTAAATAATATT-AT
1 AATAAATTATATTAAT
* *
10424599 AATATATTA-ATAAAT
1 AATAAATTATATTAAT
*
10424614 AATATCATATTA-ATAAAT
1 AATA--A-ATTATATTAAT
10424632 AATAATATTATA-TAA-
1 AATAA-ATTATATTAAT
*
10424647 AATAAATAATA-TAAT
1 AATAAATTATATTAAT
10424662 AATAAA-TATTATTAAT
1 AATAAATTA-TATTAAT
10424678 TTAATTAATA
Statistics
Matches: 106, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
14 11 0.10
15 37 0.35
16 14 0.13
17 12 0.11
18 31 0.29
19 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (16 bp):
AATAAATTATATTAAT
Found at i:10424594 original size:10 final size:10
Alignment explanation
Indices: 10424579--10424807 Score: 68
Period size: 10 Copynumber: 22.3 Consensus size: 10
10424569 AATAAATTAT
*
10424579 ATAATACTAA
1 ATAATAATAA
10424589 ATAATATTATAA
1 ATAATA--ATAA
*
10424601 TATATTAATAA
1 -ATAATAATAA
*
10424612 ATAAT-AT-C
1 ATAATAATAA
*
10424620 ATATTAATAA
1 ATAATAATAA
10424630 ATAATAAT--
1 ATAATAATAA
*
10424638 ATTAT-AT-A
1 ATAATAATAA
10424646 A-AATAAATAA
1 ATAAT-AATAA
10424656 TATAATAATAA
1 -ATAATAATAA
* *
10424667 ATATTATTAA
1 ATAATAATAA
*
10424677 TTTAATTAATAA
1 -ATAA-TAATAA
*
10424689 AT-ATTAT-A
1 ATAATAATAA
*
10424697 ATAATATATGA
1 ATAATA-ATAA
*
10424708 ATAATTAATAT
1 ATAA-TAATAA
10424719 ATAAT-ATACTA
1 ATAATAATA--A
* *
10424730 TTAAT-ATGAT
1 ATAATAAT-AA
*
10424740 ATATTAATAA
1 ATAATAATAA
10424750 ATATTATTAATAA
1 ATA--A-TAATAA
10424763 ATAATATATTAA
1 ATAATA-A-TAA
*
10424775 TATATTAATAA
1 -ATAATAATAA
10424786 ATAAT-ATAA
1 ATAATAATAA
*
10424795 AGAATAATAA
1 ATAATAATAA
10424805 ATA
1 ATA
10424808 GTTTTATTTT
Statistics
Matches: 161, Mismatches: 30, Indels: 56
0.65 0.12 0.23
Matches are distributed among these distances:
7 4 0.02
8 12 0.07
9 22 0.14
10 49 0.30
11 37 0.23
12 18 0.11
13 19 0.12
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (10 bp):
ATAATAATAA
Found at i:10424659 original size:78 final size:76
Alignment explanation
Indices: 10424530--10424791 Score: 237
Period size: 78 Copynumber: 3.4 Consensus size: 76
10424520 AATTTTACTT
* * * * *
10424530 ATAAATAATATTATATTAATAAATAAATTATATTATATTAATAAATTATATAATACTAAATAATA
1 ATAAATAATATAATATTAATAAAT-AATAATATTATATAAATAAATAATATAATAATAAATAATA
10424595 TT-ATAATATATTA
65 TTAAT-ATA-ATTA
* *
10424608 ATAAATAATATCATATTAATAAATAATAATATTATATAAAATAAATAATATAATAATAAATATTA
1 ATAAATAATATAATATTAATAAATAATAATATTATAT-AAATAAATAATATAATAATAAATAATA
*
10424673 TTAATTTAATTA
65 TTAATATAATTA
* * * * * *
10424685 ATAAATATTATAATAATATATGAATAATTAATATATAATATACTATTAATATGATATATTAATAA
1 ATAAATAATATAATATTA-ATAAATAA-TAATAT-T-ATATA--AATAA-ATAATATAATAATAA
*
10424750 ATATTATTAATA-AA-TA
59 ATAATATTAATATAATTA
* *
10424766 ATATATTA-AT-ATATTAATAAATAATA
1 ATAAATAATATAATATTAATAAATAATA
10424792 TAAAGAATAA
Statistics
Matches: 155, Mismatches: 20, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
77 33 0.21
78 64 0.41
79 13 0.08
80 4 0.03
81 11 0.07
82 6 0.04
83 24 0.15
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (76 bp):
ATAAATAATATAATATTAATAAATAATAATATTATATAAATAAATAATATAATAATAAATAATAT
TAATATAATTA
Found at i:10424689 original size:22 final size:21
Alignment explanation
Indices: 10424653--10424791 Score: 96
Period size: 23 Copynumber: 6.6 Consensus size: 21
10424643 ATAAAATAAA
10424653 TAATATAATAATAAATATTAT
1 TAATATAATAATAAATATTAT
*
10424674 TAATTTAATTAATAAATATTA-
1 TAATATAA-TAATAAATATTAT
*
10424695 T-A-ATAATATATGAATA--AT
1 TAATATAATA-ATAAATATTAT
*
10424713 TAATAT-ATAATATACTATTAAT
1 TAATATAATAATA-AATATT-AT
* *
10424735 ATGATATATTAATAAATATTAT
1 -TAATATAATAATAAATATTAT
*
10424757 TAATA-AATAATATATTAATATAT
1 TAATATAATAATA-AAT-AT-TAT
10424780 TAATA-AATAATA
1 TAATATAATAATA
10424792 TAAAGAATAA
Statistics
Matches: 93, Mismatches: 11, Indels: 26
0.72 0.08 0.20
Matches are distributed among these distances:
17 1 0.01
18 5 0.05
19 16 0.17
20 9 0.10
21 14 0.15
22 18 0.19
23 25 0.27
24 5 0.05
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (21 bp):
TAATATAATAATAAATATTAT
Found at i:10424807 original size:23 final size:23
Alignment explanation
Indices: 10424749--10424807 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
10424739 TATATTAATA
* **
10424749 AATATTATTAATAAATAATATATT
1 AATA-TATAAATAAATAATATAAG
*
10424773 AATATATTAATAAATAATATAAAG
1 AATATATAAATAAATAATAT-AAG
10424797 AATA-ATAAATA
1 AATATATAAATA
10424808 GTTTTATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 22 0.71
24 9 0.29
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (23 bp):
AATATATAAATAAATAATATAAG
Found at i:10424848 original size:19 final size:19
Alignment explanation
Indices: 10424824--10424861 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
10424814 TTTTAAGTTT
10424824 TATTAACATAATATT-TTAA
1 TATTAA-ATAATATTATTAA
*
10424843 TATTAAATATTATTATTAA
1 TATTAAATAATATTATTAA
10424862 AATATAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAAATAATATTATTAA
Found at i:10424892 original size:16 final size:17
Alignment explanation
Indices: 10424831--10424909 Score: 56
Period size: 18 Copynumber: 4.5 Consensus size: 17
10424821 TTTTATTAAC
*
10424831 ATAATATTTTAATATTAA
1 ATAAT-TTTTAATAATAA
*
10424849 ATATTATTATTAA-AATATA
1 ATA--ATTTTTAATAATA-A
* *
10424868 ATTATTTTTTAATACT-A
1 A-TAATTTTTAATAATAA
10424885 ATAA-TTTTAATAATAA
1 ATAATTTTTAATAATAA
10424901 ATAATTTTT
1 ATAATTTTT
10424910 GACATTTTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 15
0.68 0.10 0.22
Matches are distributed among these distances:
15 9 0.19
16 7 0.15
17 6 0.13
18 12 0.26
19 9 0.19
20 4 0.09
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (17 bp):
ATAATTTTTAATAATAA
Found at i:10424894 original size:15 final size:16
Alignment explanation
Indices: 10424874--10424908 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
10424864 TATAATTATT
*
10424874 TTTTAATACT-AATAA
1 TTTTAATAATAAATAA
10424889 TTTTAATAATAAATAA
1 TTTTAATAATAAATAA
10424905 TTTT
1 TTTT
10424909 TGACATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
TTTTAATAATAAATAA
Found at i:10426175 original size:21 final size:21
Alignment explanation
Indices: 10426128--10426203 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 21
10426118 CACTCTTGGC
* *
10426128 CATCTTATCAAAAAGAAAAC-
1 CATCATATCAAAAATAAAACT
* *
10426148 CACCATATCAAAAATTAAACT
1 CATCATATCAAAAATAAAACT
* * * *
10426169 CATCATATTAGAAATCAAAGT
1 CATCATATCAAAAATAAAACT
10426190 CATCATATCAAAAA
1 CATCATATCAAAAA
10426204 CTTTGAAACC
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
20 16 0.36
21 28 0.64
ACGTcount: A:0.53, C:0.20, G:0.04, T:0.24
Consensus pattern (21 bp):
CATCATATCAAAAATAAAACT
Found at i:10428177 original size:2 final size:2
Alignment explanation
Indices: 10428170--10428197 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10428160 CTAGTTTTCT
10428170 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10428198 CAAAAACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10428782 original size:235 final size:228
Alignment explanation
Indices: 10428200--10428999 Score: 568
Period size: 231 Copynumber: 3.4 Consensus size: 228
10428190 TATATATACA
* * * * * *
10428200 AAAACAATAATTAATTAAAATTTTACATTGCC-ATCACAATTATTTATATTATAATAATATATTT
1 AAAATAATAATTAATTAAAA-TTTACATTGCCAAT-ATAATTATTTACATTACAATAATTTATTA
* * * * *
10428264 TTATGATGATTCTTACTTTCCATTACATTTAAAATTGTCATAACTCTCTTTTAGTGTTTTACAAC
64 TTATGATGATTTTTACTTTCCATTAAATTTAAAATTGTCATAACT-T-TTTTAATATATTACAAC
* *** * * * *
10428329 ACTTCTTATCCATTTCACATTGAATGATACTAATTTTATGTTTTTCATTTGTTTATGTTATTAAT
127 ACTTCTTATCCATTTCAAACCAAATGATACTAATTTTATGTTTTTCACTTATTCATGTTATCAAT
* * *
10428394 TTATTTTTTTATTTTTAGCTATTTTTTATATATTTAT
192 TTATTTTTTAATTTCTAGCTATTTTTTAAATATTTAT
* * * * * *
10428431 AAGAATAATAATTAATTAAAATTTAAAGTTGTCAACATAATTATTTACTTTACAATAATTTCTTC
1 AA-AATAATAATTAATTAAAATTTACA-TTGCCAATATAATTATTTACATTACAATAATTTATTA
* * * * *
10428496 TTAT-A-GCTGTTTACTTTTTCATTAAATTTAAAATTATTATAACTCTTTTTTAATATATTACAA
64 TTATGATGATTTTTAC-TTTCCATTAAATTTAAAATTGTCATAA--CTTTTTTAATATATTACAA
* *
10428559 CATTTCTTA-CCTATTTTAAACCAAATGATA-TCAATTTTATGTTTGTGCTCACTTATTCACT-T
126 CACTTCTTATCC-ATTTCAAACCAAATGATACT-AATTTTATGTTT-T--TCACTTATTCA-TGT
* *
10428621 TATCAATTTATTTTTTAATTTCTATCTATTTTCTTTAAATATTTGT
185 TATCAATTTATTTTTTAATTTCTAGCTA-TTT-TTTAAATATTTAT
* *
10428667 AAAATAATAATTAATTAAAATTTCACATTACCAATATAATTATTTACGTTACAATAATTTATTAT
1 AAAATAATAATTAATTAAAATTT-ACATTGCCAATATAATTATTTACATTACAATAATTTATTAT
** *** ** *
10428732 TATGATTG-TTTTTACTTTCCATTATGTTTAAAATTGTCATAACGTTTTTTAGCGTATTATGATA
65 TATGA-TGATTTTTACTTTCCATTAAATTTAAAATTGTCATAAC-TTTTTTAATATATTACAACA
* * ** * * * * * * *
10428796 -AT-TTATACTCATTTTATGCTAAATTATACTAATTTTATACTCCTTTTCACTTGTTTAAGTTAC
128 CTTCTTAT-C-CATTTCAAACCAAATGATACTAATTTTAT-GT--TTTTCACTTATTCATGTTAT
* * * *
10428859 CAATATA-TTTTTAATTTTTAGTTATTTTTCT-TATATGTT-T
188 CAATTTATTTTTTAATTTCTAGCTATTTTT-TAAATAT-TTAT
* * *
10428899 AAAA-AATAATTAATTAAAATTT-TATGCTGACAACT-TAATTATTTACATTACAATAATTTGTT
1 AAAATAATAATTAATTAAAATTTACAT--TGCCAA-TATAATTATTTACATTACAATAATTTATT
* * * * ** **
10428961 TTTATAATTATTCTTACTTTTAATTATGTTTAAAATTGT
63 ATTATGATGATTTTTACTTTCCATTAAATTTAAAATTGT
10429000 AATAGTTTTT
Statistics
Matches: 455, Mismatches: 81, Indels: 66
0.76 0.13 0.11
Matches are distributed among these distances:
229 2 0.00
230 10 0.02
231 155 0.34
232 61 0.13
233 12 0.03
234 49 0.11
235 115 0.25
236 41 0.09
237 7 0.02
238 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.51
Consensus pattern (228 bp):
AAAATAATAATTAATTAAAATTTACATTGCCAATATAATTATTTACATTACAATAATTTATTATT
ATGATGATTTTTACTTTCCATTAAATTTAAAATTGTCATAACTTTTTTAATATATTACAACACTT
CTTATCCATTTCAAACCAAATGATACTAATTTTATGTTTTTCACTTATTCATGTTATCAATTTAT
TTTTTAATTTCTAGCTATTTTTTAAATATTTAT
Found at i:10428812 original size:21 final size:21
Alignment explanation
Indices: 10428788--10428833 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
10428778 TTTTAGCGTA
* *
10428788 TTATGATAATTTATACTCATT
1 TTATGATAAATTATACTAATT
*
10428809 TTATGCTAAATTATACTAATT
1 TTATGATAAATTATACTAATT
10428830 TTAT
1 TTAT
10428834 ACTCCTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (21 bp):
TTATGATAAATTATACTAATT
Found at i:10442384 original size:19 final size:19
Alignment explanation
Indices: 10442360--10442398 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
10442350 TCTTTTTCTT
10442360 TTTTTTTTCTTTGTTTTGG
1 TTTTTTTTCTTTGTTTTGG
* *
10442379 TTTTTTTTTTTTTTTTTGG
1 TTTTTTTTCTTTGTTTTGG
10442398 T
1 T
10442399 GGGGGGGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.03, G:0.13, T:0.85
Consensus pattern (19 bp):
TTTTTTTTCTTTGTTTTGG
Found at i:10442914 original size:2 final size:2
Alignment explanation
Indices: 10442907--10442938 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
10442897 ACACCTCATC
10442907 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10442939 ACATACATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10450394 original size:31 final size:27
Alignment explanation
Indices: 10450358--10450416 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
10450348 GCAAACTATC
*
10450358 TAAAAC-AAGCATGTTGATTGCTTATA
1 TAAAACAAAACATGTTGATTGCTTATA
10450384 TAAAACAAAACATGTTGATTGCTTATA
1 TAAAACAAAACATGTTGATTGCTTATA
10450411 TAAAAC
1 TAAAAC
10450417 CTGCTTTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (27 bp):
TAAAACAAAACATGTTGATTGCTTATA
Found at i:10455245 original size:23 final size:23
Alignment explanation
Indices: 10455219--10455265 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
10455209 ACATGATCAT
* *
10455219 ATAAACATGTTTAACAATCACAA
1 ATAAACATGTATAAAAATCACAA
*
10455242 ATAAATATGTATAAAAATCACAA
1 ATAAACATGTATAAAAATCACAA
10455265 A
1 A
10455266 ATCATTTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.57, C:0.13, G:0.04, T:0.26
Consensus pattern (23 bp):
ATAAACATGTATAAAAATCACAA
Found at i:10463232 original size:64 final size:62
Alignment explanation
Indices: 10463163--10463284 Score: 154
Period size: 64 Copynumber: 1.9 Consensus size: 62
10463153 TAATTAATTT
** * * * * *
10463163 TATATTAAAATTTTCTTTTAAATAATTATTTTTTATTATAGTACAAAACATAATAAATATGTAG
1 TATATTAAAAAATCCTTTTAAATAAATAATTTTCATTATAATAC-AAA-ATAATAAATATGTAG
*
10463227 TATATTAAAAAATCCTTTTAACTAAATAATTTTCATTATAATACAAAATAATAAATAT
1 TATATTAAAAAATCCTTTTAAATAAATAATTTTCATTATAATACAAAATAATAAATAT
10463285 TTATATTACA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
62 11 0.22
63 3 0.06
64 36 0.72
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (62 bp):
TATATTAAAAAATCCTTTTAAATAAATAATTTTCATTATAATACAAAATAATAAATATGTAG
Found at i:10463549 original size:36 final size:36
Alignment explanation
Indices: 10463502--10463575 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
10463492 ATTTATTAAA
*
10463502 TTTCACTTATTTGAGTACTATGTAGCACCCAAAAAG
1 TTTCACTTATTTGAGTACCATGTAGCACCCAAAAAG
* *
10463538 TTTCACTTATTTGAGTACCATGTAGCACCTAAAGAG
1 TTTCACTTATTTGAGTACCATGTAGCACCCAAAAAG
10463574 TT
1 TT
10463576 CTTTTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (36 bp):
TTTCACTTATTTGAGTACCATGTAGCACCCAAAAAG
Found at i:10464349 original size:14 final size:14
Alignment explanation
Indices: 10464330--10464356 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10464320 TGGATATTTC
10464330 CTTTTTTATTTTGG
1 CTTTTTTATTTTGG
10464344 CTTTTTTATTTTG
1 CTTTTTTATTTTG
10464357 TTTATTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.07, G:0.11, T:0.74
Consensus pattern (14 bp):
CTTTTTTATTTTGG
Found at i:10469381 original size:20 final size:22
Alignment explanation
Indices: 10469358--10469408 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
10469348 ATATTTTTTT
*
10469358 AAAAAATAT-CTATT-AAAAAC
1 AAAAAATATACAATTAAAAAAC
10469378 AAAAAATATACAATTAAAAAAC
1 AAAAAATATACAATTAAAAAAC
*
10469400 TAAAAATAT
1 AAAAAATAT
10469409 TAGATTTGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 9 0.33
21 4 0.15
22 14 0.52
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.24
Consensus pattern (22 bp):
AAAAAATATACAATTAAAAAAC
Found at i:10472885 original size:18 final size:18
Alignment explanation
Indices: 10472864--10472909 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
10472854 TTTGAAACAA
10472864 AAATTATATT-TTTACATT
1 AAATTATATTGTTTACA-T
*
10472882 AAATT-TTTTGTTTACAT
1 AAATTATATTGTTTACAT
10472899 AAATTTATATT
1 AAA-TTATATT
10472910 CCATCTGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
17 7 0.30
18 13 0.57
19 3 0.13
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (18 bp):
AAATTATATTGTTTACAT
Found at i:10474644 original size:18 final size:18
Alignment explanation
Indices: 10474622--10474837 Score: 133
Period size: 18 Copynumber: 11.4 Consensus size: 18
10474612 AATTTTACTT
10474622 ATAAATAATATTATATTA
1 ATAAATAATATTATATTA
*
10474640 GTAAATAATATTATAATATATTA
1 ATAAAT-A-A-TAT--TATATTA
*
10474663 ATAAATATTATATAATCTATTA
1 ATAAATA--ATAT--TATATTA
10474685 ATAAATAATATTATATTA
1 ATAAATAATATTATATTA
*
10474703 CTAAAT-A-A-TATATTA
1 ATAAATAATATTATATTA
10474718 AT--A-AATA-T-TATTA
1 ATAAATAATATTATATTA
*
10474731 ATAAATAACATTATATTA
1 ATAAATAATATTATATTA
10474749 ATAAATGATATTATAATATATTA
1 ATAAAT-A-A-TAT--TATATTA
*
10474772 ATAAATAACATTATATTA
1 ATAAATAATATTATATTA
10474790 ATAAATGATATTATAATATATTA
1 ATAAAT-A-A-TAT--TATATTA
* * *
10474813 ATAAATAATATAAAAATA
1 ATAAATAATATTATATTA
10474831 ATAAATA
1 ATAAATA
10474838 GTTTTATTTT
Statistics
Matches: 162, Mismatches: 13, Indels: 46
0.73 0.06 0.21
Matches are distributed among these distances:
13 9 0.06
14 2 0.01
15 9 0.06
16 4 0.02
17 2 0.01
18 51 0.31
19 3 0.02
20 12 0.07
21 9 0.06
22 21 0.13
23 40 0.25
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (18 bp):
ATAAATAATATTATATTA
Found at i:10474668 original size:41 final size:39
Alignment explanation
Indices: 10474622--10474820 Score: 148
Period size: 41 Copynumber: 4.7 Consensus size: 39
10474612 AATTTTACTT
* * *
10474622 ATAAATAATATTATATTAGTAAATAATATTATAATATATTA
1 ATAAATAATATTATATTA-TAAATAA-ATAACATTATATTA
* * *
10474663 ATAAATATTA-TATAATCTATTAATAAATAATATTATATTA
1 ATAAATAATATTAT-AT-TATAAATAAATAACATTATATTA
* *
10474703 CTAAATAATATATTAATAAATATTATTAATAAATAACATTATATTA
1 ATAAAT-A-ATA-T--T--ATATTATAAATAAATAACATTATATTA
* *
10474749 ATAAATGATATTATAATATATTAATAAATAACATTATATTA
1 ATAAATAATATTAT-AT-TATAAATAAATAACATTATATTA
* *
10474790 ATAAATGATATTATAATATATTAATAAATAA
1 ATAAATAATATTAT-AT-TATAAATAAATAA
10474821 TATAAAAATA
Statistics
Matches: 137, Mismatches: 9, Indels: 24
0.81 0.05 0.14
Matches are distributed among these distances:
39 2 0.01
40 22 0.16
41 73 0.53
42 4 0.03
43 1 0.01
44 3 0.02
46 28 0.20
47 2 0.01
48 2 0.01
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (39 bp):
ATAAATAATATTATATTATAAATAAATAACATTATATTA
Found at i:10474683 original size:22 final size:23
Alignment explanation
Indices: 10474633--10474823 Score: 174
Period size: 23 Copynumber: 8.8 Consensus size: 23
10474623 TAAATAATAT
*
10474633 TATATTAGTAAATAATATTATAA
1 TATATTAATAAATAATATTATAA
*
10474656 TATATTAATAAATATTA-TATAA
1 TATATTAATAAATAATATTATAA
*
10474678 TCTATTAATAAATAATATTAT-A
1 TATATTAATAAATAATATTATAA
*
10474700 T-TACTAA-ATAAT-ATATTAATAA
1 TATATTAATA-AATAATATT-ATAA
* * * *
10474722 -ATATT-ATTAATAA-ATAACAT
1 TATATTAATAAATAATATTATAA
*
10474742 TATATTAATAAATGATATTATAA
1 TATATTAATAAATAATATTATAA
*
10474765 TATATTAATAAAT-A-A-CAT--
1 TATATTAATAAATAATATTATAA
*
10474783 TATATTAATAAATGATATTATAA
1 TATATTAATAAATAATATTATAA
10474806 TATATTAATAAATAATAT
1 TATATTAATAAATAATAT
10474824 AAAAATAATA
Statistics
Matches: 135, Mismatches: 18, Indels: 30
0.74 0.10 0.16
Matches are distributed among these distances:
18 13 0.10
19 1 0.01
20 11 0.08
21 24 0.18
22 34 0.25
23 52 0.39
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
TATATTAATAAATAATATTATAA
Found at i:10474694 original size:25 final size:25
Alignment explanation
Indices: 10474635--10474746 Score: 84
Period size: 22 Copynumber: 4.8 Consensus size: 25
10474625 AATAATATTA
* *
10474635 TATTAGTAAATAATA-T-TATAATA
1 TATTAATAAATAATATTATATAATC
10474658 TATTAAT--A-AATATTATATAATC
1 TATTAATAAATAATATTATATAATC
*
10474680 TATTAATAAATAATATTATATTA-C
1 TATTAATAAATAATATTATATAATC
*
10474704 TA--AAT-AAT-ATATTA-ATAAATAT
1 TATTAATAAATAATATTATAT-AAT-C
*
10474726 TATTAATAAATAACATTATAT
1 TATTAATAAATAATATTATAT
10474747 TAATAAATGA
Statistics
Matches: 70, Mismatches: 6, Indels: 22
0.71 0.06 0.22
Matches are distributed among these distances:
19 2 0.03
20 11 0.16
21 5 0.07
22 18 0.26
23 6 0.09
24 7 0.10
25 14 0.20
26 5 0.07
27 2 0.03
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (25 bp):
TATTAATAAATAATATTATATAATC
Found at i:10474713 original size:13 final size:13
Alignment explanation
Indices: 10474634--10474833 Score: 98
Period size: 13 Copynumber: 15.2 Consensus size: 13
10474624 AAATAATATT
*
10474634 ATATTAGTAAATA
1 ATATTAATAAATA
10474647 ATATT-AT-AAT-
1 ATATTAATAAATA
10474657 ATATTAATAAATA
1 ATATTAATAAATA
* * *
10474670 TTATATAATCTATTA
1 ATAT-TAAT-AAATA
*
10474685 ATA--AATAATATT
1 ATATTAATAA-ATA
*
10474697 ATATTACTAAATAA
1 ATATTAATAAAT-A
10474711 TATATTAATAAATA
1 -ATATTAATAAATA
*
10474725 TTATTAATAAATAACA
1 ATATTAATAAAT---A
*
10474741 TTATATTAATAAATG
1 --ATATTAATAAATA
10474756 ATATT-ATAATATA
1 ATATTAATAA-ATA
* * *
10474769 TTAATAAATAACATT
1 AT-ATTAATAA-ATA
*
10474784 ATATTAATAAATG
1 ATATTAATAAATA
10474797 ATATT-AT-AAT-
1 ATATTAATAAATA
10474807 ATATTAATAAATA
1 ATATTAATAAATA
10474820 ATA-TAA-AAATA
1 ATATTAATAAATA
10474831 ATA
1 ATA
10474834 AATAGTTTTA
Statistics
Matches: 144, Mismatches: 22, Indels: 44
0.69 0.10 0.21
Matches are distributed among these distances:
10 10 0.07
11 19 0.13
12 23 0.16
13 39 0.27
14 18 0.12
15 23 0.16
16 1 0.01
18 11 0.08
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.41
Consensus pattern (13 bp):
ATATTAATAAATA
Found at i:10474744 original size:46 final size:41
Alignment explanation
Indices: 10474656--10474820 Score: 226
Period size: 41 Copynumber: 3.9 Consensus size: 41
10474646 AATATTATAA
* *
10474656 TATATTAATAAAT-AT-TATATAATCTATTAATAAATAATAT
1 TATATTAATAAATGATAT-TATAATATATTAATAAATAACAT
* *
10474696 TATATTACTAAATAATATATTAATAAATATTATTAATAAATAACAT
1 TATATTAATAAAT--GATATT-AT-AATA-TATTAATAAATAACAT
10474742 TATATTAATAAATGATATTATAATATATTAATAAATAACAT
1 TATATTAATAAATGATATTATAATATATTAATAAATAACAT
10474783 TATATTAATAAATGATATTATAATATATTAATAAATAA
1 TATATTAATAAATGATATTATAATATATTAATAAATAA
10474821 TATAAAAATA
Statistics
Matches: 113, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
40 12 0.11
41 54 0.48
42 4 0.04
43 5 0.04
44 8 0.07
45 3 0.03
46 27 0.24
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (41 bp):
TATATTAATAAATGATATTATAATATATTAATAAATAACAT
Found at i:10474820 original size:15 final size:15
Alignment explanation
Indices: 10474628--10474759 Score: 83
Period size: 15 Copynumber: 8.5 Consensus size: 15
10474618 ACTTATAAAT
* *
10474628 AATATTATATTAGTA
1 AATAATATATTAATA
10474643 AATAATAT-TATAATA
1 AATAATATAT-TAATA
* * *
10474658 TATTAATA-AATATTA
1 -AATAATATATTAATA
* *
10474673 TATAATCTATTAATA
1 AATAATATATTAATA
*
10474688 AATAATATTATATTACTA
1 AAT-A-A-TATATTAATA
10474706 AATAATATATTAATA
1 AATAATATATTAATA
10474721 AAT-AT-TATTAATA
1 AATAATATATTAATA
10474734 AATAACATTATATTAATA
1 AAT-A-A-TATATTAATA
*
10474752 AATGATAT
1 AATAATAT
10474760 TATAATATAT
Statistics
Matches: 90, Mismatches: 15, Indels: 24
0.70 0.12 0.19
Matches are distributed among these distances:
13 11 0.12
14 7 0.08
15 37 0.41
16 10 0.11
17 3 0.03
18 22 0.24
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (15 bp):
AATAATATATTAATA
Found at i:10474974 original size:27 final size:27
Alignment explanation
Indices: 10474914--10474974 Score: 81
Period size: 25 Copynumber: 2.3 Consensus size: 27
10474904 TTATTTTTGA
10474914 ATATTAATTTTAATATATTTTAATAAT
1 ATATTAATTTTAATATATTTTAATAAT
* *
10474941 A-AATAATTTTTA-ATATTTTAATAATT
1 ATATTAATTTTAATATATTTTAATAA-T
10474967 ATATTAAT
1 ATATTAAT
10474975 ATTATTTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 12 0.41
26 11 0.38
27 6 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
ATATTAATTTTAATATATTTTAATAAT
Found at i:10475102 original size:14 final size:14
Alignment explanation
Indices: 10475078--10475122 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
10475068 AAATGTAAAT
*
10475078 ATTTTCTAAAAATTA
1 ATTTTC-AAAAATAA
*
10475093 TTTTTCAAAAATAA
1 ATTTTCAAAAATAA
10475107 ATTTTCACAAAATAA
1 ATTTTCA-AAAATAA
10475122 A
1 A
10475123 CGGAGCCTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (14 bp):
ATTTTCAAAAATAA
Found at i:10475110 original size:15 final size:15
Alignment explanation
Indices: 10475073--10475122 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
10475063 TCATAAAATG
10475073 TAAATATTTTCTAAAAA
1 TAAAT-TTTTC-AAAAA
*
10475090 T-TATTTTTCAAAAA
1 TAAATTTTTCAAAAA
10475104 TAAA-TTTTCACAAAA
1 TAAATTTTTCA-AAAA
10475119 TAAA
1 TAAA
10475123 CGGAGCCTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.41
15 14 0.48
16 2 0.07
17 1 0.03
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (15 bp):
TAAATTTTTCAAAAA
Found at i:10475271 original size:11 final size:11
Alignment explanation
Indices: 10475255--10475604 Score: 117
Period size: 11 Copynumber: 33.4 Consensus size: 11
10475245 TTTTAGGATT
10475255 ATATTAATATA
1 ATATTAATATA
*
10475266 ATATT-AT-TC
1 ATATTAATATA
10475275 ATA-TAATAT-
1 ATATTAATATA
*
10475284 TTATTAATATA
1 ATATTAATATA
10475295 ATATT-ATATGA
1 ATATTAATAT-A
10475306 ATA-TAATAT-
1 ATATTAATATA
10475315 ATGATTAATATA
1 AT-ATTAATATA
*
10475327 ATATTTAT-TA
1 ATATTAATATA
10475337 ATA-T-AT-T-
1 ATATTAATATA
* *
10475344 TTATGAATATA
1 ATATTAATATA
* *
10475355 ATA-TATTATT
1 ATATTAATATA
10475365 ATATTAATATA
1 ATATTAATATA
*
10475376 ATATTTATGA-A
1 ATATTAAT-ATA
10475387 TATATTAAT-TCA
1 -ATATTAATAT-A
* *
10475399 TTAGTAATATA
1 ATATTAATATA
* *
10475410 TTATTAATATG
1 ATATTAATATA
**
10475421 ATATTTGT-TA
1 ATATTAATATA
* *
10475431 ATA-TATTATT
1 ATATTAATATA
* * *
10475441 ATTTTCATACA
1 ATATTAATATA
*
10475452 ATATT--TATT
1 ATATTAATATA
10475461 ATATTAATATA
1 ATATTAATATA
10475472 ATATT-ATATTA
1 ATATTAATA-TA
*
10475483 AGA-TAATATA
1 ATATTAATATA
* *
10475493 TTAATAA-ATA
1 ATATTAATATA
10475503 ATATT--TATGA
1 ATATTAATAT-A
*
10475513 ATA-TATTAT-
1 ATATTAATATA
* *
10475522 TTATATGATATA
1 ATAT-TAATATA
10475534 GATA-TAATATA
1 -ATATTAATATA
* *
10475545 TTATTTATAATA
1 ATATTAAT-ATA
*
10475557 TTTATTAATATA
1 -ATATTAATATA
10475569 ATATTAATATA
1 ATATTAATATA
* *
10475580 TTATGAATATA
1 ATATTAATATA
*
10475591 ATATTTAT-TA
1 ATATTAATATA
10475601 ATAT
1 ATAT
10475605 ATTGTTTATT
Statistics
Matches: 249, Mismatches: 53, Indels: 75
0.66 0.14 0.20
Matches are distributed among these distances:
7 2 0.01
8 4 0.02
9 27 0.11
10 60 0.24
11 129 0.52
12 18 0.07
13 9 0.04
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.50
Consensus pattern (11 bp):
ATATTAATATA
Found at i:10475317 original size:13 final size:13
Alignment explanation
Indices: 10475299--10475360 Score: 52
Period size: 13 Copynumber: 4.4 Consensus size: 13
10475289 AATATAATAT
10475299 TATATGAATATAA
1 TATATGAATATAA
10475312 TATATGATTAATATAA
1 TATATG---AATATAA
* *
10475328 TATTTATTAATATAT
1 TA--TATGAATATAA
*
10475343 TTTATGAATATAA
1 TATATGAATATAA
10475356 TATAT
1 TATAT
10475361 TATTATATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
13 19 0.50
15 7 0.18
16 9 0.24
18 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (13 bp):
TATATGAATATAA
Found at i:10475373 original size:76 final size:79
Alignment explanation
Indices: 10475256--10475600 Score: 235
Period size: 76 Copynumber: 4.4 Consensus size: 79
10475246 TTTAGGATTA
* ** *
10475256 TATTAATATAATATTATTCATATAATATTTA-T-TAATATA-ATATTATATGAATATAATATATG
1 TATTAATATAATTTTATGAATATAATATTTATTATAATATAGATATTATATTAATATAATATAT-
10475318 ATTAATATAATAT-T
65 ATTAATATAATATAT
*
10475332 TATTAATAT-ATTTTATGAATATAATATATTATTAT-AT-TA-ATATAATATT--TATGAATATA
1 TATTAATATAATTTTATGAATATAATAT-TTATTATAATATAGATATTATATTAATAT-AATATA
*
10475391 TTAATTCATTAGTAATATAT
64 -T-ATT-AATA-TAATATAT
* * * * * **
10475411 TATTAATATGATATTTGTTAATATATTATTATTTTCATACA-ATATTTATTATATTAATATAATA
1 TATTAATATAAT-TTTATGAATATAATATT-TATT-ATA-ATATAGATATTATATTAATATAATA
*
10475475 TTATATTAAGATAATATAT
62 -TATATTAATATAATATAT
* * * *
10475494 TAATAA-ATAATATTTATGAATATATTATTTA-TATGATATAGATATAATATATT-AT-TTATA-
1 TATTAATATAAT-TTTATGAATATAATATTTATTATAATATAGATAT--TATATTAATATAATAT
* *
10475554 ATATTTAT-TAATATAA
63 ATATTAATATAATATAT
10475570 TATTAATAT-A--TTATGAATATAATATTTATTA
1 TATTAATATAATTTTATGAATATAATATTTATTA
10475601 ATATATTGTT
Statistics
Matches: 216, Mismatches: 29, Indels: 50
0.73 0.10 0.17
Matches are distributed among these distances:
73 17 0.08
74 5 0.02
75 21 0.10
76 39 0.18
77 14 0.06
78 8 0.04
79 22 0.10
80 6 0.03
81 23 0.11
82 22 0.10
83 13 0.06
84 5 0.02
85 11 0.05
86 5 0.02
87 5 0.02
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.50
Consensus pattern (79 bp):
TATTAATATAATTTTATGAATATAATATTTATTATAATATAGATATTATATTAATATAATATATA
TTAATATAATATAT
Found at i:10475416 original size:94 final size:97
Alignment explanation
Indices: 10475270--10475851 Score: 311
Period size: 94 Copynumber: 6.1 Consensus size: 97
10475260 AATATAATAT
* * * *
10475270 TATTCATATAATATT-TATTAATAT-A-ATATTATATGAATATAATATATGATTAATATAATATT
1 TATTAATATAATATTATATGAAGATAATATATTA-AT-AA-ATAATATATTATTAATATAATATT
*
10475332 TATTAATATATT-TTA-TGAATATAATATATTATTA
63 TATTAATATATTATTATTGAATACAATAT-TTATTA
* * * * * * *
10475366 TATTAATATAATATT-TATGAATATATTA-ATTCATTAGTAATATATTATTAATATGATATTTGT
1 TATTAATATAATATTATATGAAGATAATATATTAATAAATAATATATTATTAATATAATATTTAT
**
10475429 TAATATATTATTATTTTCATACAATATTTATTA
66 TAATATATTATTA-TTGAATACAATATTTATTA
* * *
10475462 TATTAATATAATATTATATTAAGATAATATATTAATAAATAATAT-TTATGAATATATTATTTAT
1 TATTAATATAATATTATATGAAGATAATATATTAATAAATAATATATTATTAATATAATATTTAT
* * *
10475526 ATGATATAGATATAATATATT-ATTTATAATATTTATTA
66 -T-A-AT--ATATTAT-TATTGA-ATACAATATTTATTA
* * * * *
10475564 -ATATAATATTAATA-TATTATGAATATAATAT-TTATTAATATATTGT-TTATT-TTATAATA-
1 TAT-TAATA-TAATATTA-TATGAAGATAATATATTAATAA-ATAATATATTATTAATATAATAT
10475623 -TATT-ATATATT-TTATT-AAT--AATA--TATTA
62 TTATTAATATATTATTATTGAATACAATATTTATTA
** * *
10475651 TATTAATATGTTATTATATTATATTGATAATATATTGAAT--ATAATATATTA-TATTAATAATA
1 TATTAATATAATATTATATGA-A--GATAATATATT-AATAAATAATATATTATTAAT-ATAATA
* * *
10475713 TGTTAATAA-ATATTA-TATT-AAGAGAATATATTATT-
61 T-TTATTAATATATTATTATTGAATACAATAT-TTATTA
* *
10475748 TATTAATATAATATT-GAT-AA-ATAATATATTAA-AAATAATATATTAATGAATAAATAATATT
1 TATTAATATAATATTATATGAAGATAATATATTAATAAATAATATATT-ATTAAT--ATAATATT
* * * *
10475809 ATATTAATAAATAATATATT-ATTA-AAT-GTTATTA
63 -TATTAATATATTAT-TATTGAATACAATATTTATTA
10475843 TATTAATAT
1 TATTAATAT
10475852 TATTAATTAC
Statistics
Matches: 382, Mismatches: 56, Indels: 97
0.71 0.10 0.18
Matches are distributed among these distances:
86 7 0.02
87 13 0.03
88 8 0.02
89 16 0.04
90 10 0.03
91 23 0.06
92 6 0.02
93 18 0.05
94 56 0.15
95 22 0.06
96 52 0.14
97 56 0.15
98 18 0.05
99 2 0.01
100 5 0.01
101 2 0.01
102 40 0.10
103 28 0.07
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (97 bp):
TATTAATATAATATTATATGAAGATAATATATTAATAAATAATATATTATTAATATAATATTTAT
TAATATATTATTATTGAATACAATATTTATTA
Found at i:10475506 original size:51 final size:50
Alignment explanation
Indices: 10475270--10475829 Score: 251
Period size: 51 Copynumber: 11.4 Consensus size: 50
10475260 AATATAATAT
*
10475270 TATTCATATAATATT-TATTAATATAATATTATATGAAT-ATAATA--TA-T-
1 TATTAATATAATATTATATTAATATAATA-TAT-T-AATAATAATATTTATTA
* * * *
10475317 GATTAATATAATATT-TATTAATATATTTTATGAAT-ATAATATATTATTA
1 TATTAATATAATATTATATTAATATAATATATTAATAATAATAT-TTATTA
* * * *
10475366 TATTAATATAATATT-TATGAATATATTA-ATTCATTAGTAATA--TA-T-
1 TATTAATATAATATTATATTAATATAATATATT-AATAATAATATTTATTA
* * * * *
10475411 TATTAATATGATATT-TGTTAATATATTATTATT-TTCATACAATATTTATTA
1 TATTAATATAATATTATATTAATATAATA-TATTAAT-A-ATAATATTTATTA
*
10475462 TATTAATATAATATTATATTAAGATAATATATTAATAAATAATATTTATGAATA
1 TATTAATATAATATTATATTAATATAATATATTAAT-AATAATATTTAT---TA
* * * *
10475516 TATT-AT-TTATATGATA-TAGATATAATATATTATTTATAATATTTATTA
1 TATTAATATAATATTATATTA-ATATAATATATTAATAATAATATTTATTA
* * * *
10475564 -ATATAATATTAATA-TATTATGAATATAATATTTATTAAT-ATATTGTTTATTT
1 TAT-TAATA-TAATATTA-TATTAATATAATA--TATTAATAATAATATTTATTA
* * * *
10475616 TA-TAATATATTATATATTTTATTAATAATATATT-ATATTAATATGTTATTA
1 TATTAATATAATAT-TATATTAAT-ATAATATATTAATAATAATAT-TTATTA
* * *
10475667 TATT-ATATTGATAATATATTGAATATAATATATT-ATATTAATA---A-TA
1 TATTAATA-TAATATTATATT-AATATAATATATTAATAATAATATTTATTA
* * * * *
10475713 TGTTAATA-AATATTATATTAAGAGAATATATTATTTATTAATA--TA--A
1 TATTAATATAATATTATATTAATATAATATATTA-ATAATAATATTTATTA
* * * *
10475759 TATTGATA-AATAATATATTAAAAATAATATATTAATGAATAA-ATAATATTA
1 TATTAATATAATATTATATT-AATATAATATATTAAT-AATAATAT-TTATTA
*
10475810 TATTAATA-AATAATATATTA
1 TATTAATATAATATTATATTA
10475830 TTAAATGTTA
Statistics
Matches: 402, Mismatches: 62, Indels: 95
0.72 0.11 0.17
Matches are distributed among these distances:
44 20 0.05
45 36 0.09
46 37 0.09
47 58 0.14
48 6 0.01
49 35 0.09
50 20 0.05
51 117 0.29
52 58 0.14
53 9 0.02
54 6 0.01
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (50 bp):
TATTAATATAATATTATATTAATATAATATATTAATAATAATATTTATTA
Found at i:10475701 original size:30 final size:28
Alignment explanation
Indices: 10475665--10475858 Score: 120
Period size: 26 Copynumber: 6.9 Consensus size: 28
10475655 AATATGTTAT
*
10475665 TATATTATATTGATAATATATTGAATATAA
1 TATATTATATTAATAATATATT-AATA-AA
*
10475695 TATATTATATTAATAATATGTTAAT-AA
1 TATATTATATTAATAATATATTAATAAA
* *
10475722 -ATATTATATTAAGAGAATATATTATTTATTAA
1 TATATTATATT-A-ATAATATATTA---ATAAA
* *
10475754 TATAATATTGATAAATAATATATTAA-AAA
1 TATATTA-T-ATTAATAATATATTAATAAA
* *
10475783 TA-A-TATATTAATGAATA-AATAAT-AT
1 TATATTATATTAAT-AATATATTAATAAA
* *
10475808 TATATTA-ATAAATAATATATTATTAAA
1 TATATTATATTAATAATATATTAATAAA
*
10475835 TGTTATTATATTAAT-AT-TATTAAT
1 T-ATATTATATTAATAATATATTAAT
10475859 TACAAATGGA
Statistics
Matches: 129, Mismatches: 18, Indels: 37
0.70 0.10 0.20
Matches are distributed among these distances:
25 16 0.12
26 25 0.19
27 15 0.12
28 17 0.13
29 12 0.09
30 21 0.16
31 2 0.02
32 2 0.02
33 15 0.12
34 2 0.02
35 2 0.02
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (28 bp):
TATATTATATTAATAATATATTAATAAA
Found at i:10475730 original size:26 final size:25
Alignment explanation
Indices: 10475485--10475733 Score: 90
Period size: 26 Copynumber: 9.6 Consensus size: 25
10475475 TTATATTAAG
*
10475485 ATAATATATTA-ATAAATAATATTT-
1 ATAA-ATATTATATTAATAATATTTA
* **
10475509 ATGAATATATTAT-TTATATGATATAGA
1 AT-AA-ATATTATATTA-ATAATATTTA
10475536 TATAATATATTAT-TT-ATAATATTT-
1 -ATAA-ATATTATATTAATAATATTTA
* *
10475560 ATTAATATAATATTAAT-ATATTATGA
1 ATAAATATTATATTAATAATATT-T-A
*
10475586 ATATAATATT-TATTAATATATTGTTTA
1 ATA-AATATTATATTAATA-A-TATTTA
* ** * * *
10475613 TTTTATAATATATTATATATTTTATTA
1 ATAAATATTATATTA-ATAATAT-TTA
*
10475640 ATAATATATTATATTAAT-AT-GTT-
1 ATAA-ATATTATATTAATAATATTTA
* *
10475663 AT-TATATTATATTGATAATATATTGAA
1 ATAAATATTATATTAATAATAT-TT--A
10475690 TATAATATATTATATTAATAATATGTTA
1 -ATAA-ATATTATATTAATAATAT-TTA
10475718 ATAAATATTATATTAA
1 ATAAATATTATATTAA
10475734 GAGAATATAT
Statistics
Matches: 168, Mismatches: 30, Indels: 52
0.67 0.12 0.21
Matches are distributed among these distances:
21 12 0.07
22 8 0.05
23 12 0.07
24 9 0.05
25 17 0.10
26 34 0.20
27 34 0.20
28 20 0.12
29 3 0.02
30 19 0.11
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (25 bp):
ATAAATATTATATTAATAATATTTA
Found at i:10475732 original size:5 final size:5
Alignment explanation
Indices: 10475252--10475706 Score: 96
Period size: 5 Copynumber: 92.8 Consensus size: 5
10475242 TTCTTTTAGG
* * * *
10475252 ATTAT ATTAAT ATAAT ATTAT -TCAT ATAAT ATT-T ATTAAT ATAAT ATTAT
1 ATTAT ATT-AT ATTAT ATTAT ATTAT ATTAT ATTAT ATT-AT ATTAT ATTAT
* * * *
10475302 ATGAAT ATAAT A-TAT GATTAAT ATAAT ATT-T ATTA- A-TAT ATTTT
1 AT-TAT ATTAT ATTAT -ATT-AT ATTAT ATTAT ATTAT ATTAT ATTAT
* * * *
10475346 ATGAAT ATAAT A-TATT ATTAT ATTAAT ATAAT ATTTAT GAATAT ATTA-
1 AT-TAT ATTAT ATTA-T ATTAT ATT-AT ATTAT A-TTAT -ATTAT ATTAT
* * * * *
10475394 ATT-C ATTAGT AATAT ATTAT -TAAT ATGAT ATT-T GTTA- ATATATT
1 ATTAT ATTA-T ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT-TA-T
* ** * *
10475438 ATTAT TTTCAT ACAAT ATT-T ATTAT ATTAAT ATAAT ATTAT ATTA- A-GAT
1 ATTAT ATT-AT ATTAT ATTAT ATTAT ATT-AT ATTAT ATTAT ATTAT ATTAT
* * * * * *
10475487 AATAT ATTA- A-TAA ATAAT ATTTAT GAATAT ATTAT -TTAT ATGAT A-TAG
1 ATTAT ATTAT ATTAT ATTAT A-TTAT -ATTAT ATTAT ATTAT ATTAT ATTAT
* *
10475535 A-TAT AATAT ATTAT -TTAT A--AT ATT-T ATTAAT ATAAT ATTA- A-TAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATT-AT ATTAT ATTAT ATTAT
* * * * * *
10475579 ATTAT GAATAT AATAT -TTATT AATAT ATTGT -TTAT TTTAT AATAT ATTAT
1 ATTAT -ATTAT ATTAT ATTA-T ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
*
10475629 A-TAT -TT-T ATTAAT AATAT ATTAT ATTAAT ATGT-T ATTAT ATTAT
1 ATTAT ATTAT ATT-AT ATTAT ATTAT ATT-AT AT-TAT ATTAT ATTAT
* *
10475673 ATTGAT AATAT ATTGA- A-TAT AATAT ATTAT ATTA
1 ATT-AT ATTAT ATT-AT ATTAT ATTAT ATTAT ATTA
10475707 ATAATATGTT
Statistics
Matches: 328, Mismatches: 64, Indels: 116
0.65 0.13 0.23
Matches are distributed among these distances:
3 12 0.04
4 70 0.21
5 172 0.52
6 67 0.20
7 7 0.02
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (5 bp):
ATTAT
Found at i:10475768 original size:46 final size:44
Alignment explanation
Indices: 10475677--10475858 Score: 129
Period size: 46 Copynumber: 4.0 Consensus size: 44
10475667 TATTATATTG
* * *
10475677 ATAATATATTGAATATAATATATTATATTAATAATATGTTAATAA
1 ATAATATATT-AAGAGAATATATTATATTAATAATATATTAATAA
* *
10475722 ATATTATATTAAGAGAATATATTATTTATTAAT-ATAATATTGATAA
1 ATAATATATTAAGAGAATATATTA--TATTAATAAT-ATATTAATAA
* * *
10475768 ATAATATATTAAAAATAATATATTAATGAATAAATAATATTATATTAATAA
1 ATAATATATT-AAGAGAATATATT-AT--AT---TAATAATATATTAATAA
** *
10475819 ATAATATATTATTA-AATGTTATTATATTAAT-AT-TATTAAT
1 ATAATATATTAAGAGAAT-ATATTATATTAATAATATATTAAT
10475859 TACAAATGGA
Statistics
Matches: 111, Mismatches: 14, Indels: 27
0.73 0.09 0.18
Matches are distributed among these distances:
42 7 0.06
43 1 0.01
44 16 0.14
45 11 0.10
46 25 0.23
47 13 0.12
48 3 0.03
49 5 0.05
50 6 0.05
51 23 0.21
52 1 0.01
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (44 bp):
ATAATATATTAAGAGAATATATTATATTAATAATATATTAATAA
Found at i:10475785 original size:14 final size:14
Alignment explanation
Indices: 10475677--10475793 Score: 67
Period size: 14 Copynumber: 7.9 Consensus size: 14
10475667 TATTATATTG
* *
10475677 ATAATATATTGAAT
1 ATAATATATTAAAA
*
10475691 ATAATATATTATATTA
1 ATAATATATTA-A-AA
*
10475707 ATAATATGTTAATAA
1 ATAATATATTAA-AA
*
10475722 ATATTATATTAAGAGA
1 ATAATATATTAA-A-A
*
10475738 AT-ATATTATTTATTAAT
1 ATAATA-TA-TTA--AAA
* *
10475755 ATAATAT-TGATAA
1 ATAATATATTAAAA
10475768 ATAATATATTAAAA
1 ATAATATATTAAAA
10475782 ATAATATATTAA
1 ATAATATATTAA
10475794 TGAATAAATA
Statistics
Matches: 79, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
13 8 0.10
14 26 0.33
15 19 0.24
16 15 0.19
17 6 0.08
18 4 0.05
19 1 0.01
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (14 bp):
ATAATATATTAAAA
Found at i:10475821 original size:22 final size:22
Alignment explanation
Indices: 10475777--10475832 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
10475767 AATAATATAT
* *
10475777 TAAA-AATAATATATTAATGAA
1 TAAATAATATTATATTAATAAA
10475798 TAAATAATATTATATTAATAAA
1 TAAATAATATTATATTAATAAA
*
10475820 TAATATATTATTA
1 TAA-ATAATATTA
10475833 AATGTTATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 4 0.13
22 18 0.60
23 8 0.27
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
TAAATAATATTATATTAATAAA
Found at i:10475854 original size:11 final size:11
Alignment explanation
Indices: 10475252--10475732 Score: 108
Period size: 11 Copynumber: 45.4 Consensus size: 11
10475242 TTCTTTTAGG
10475252 ATTATATTAAT
1 ATTATATTAAT
*
10475263 ATAATATT-AT
1 ATTATATTAAT
*
10475273 -TCATA-TAAT
1 ATTATATTAAT
10475282 ATT-TATTAAT
1 ATTATATTAAT
*
10475292 ATAATATT-AT
1 ATTATATTAAT
*
10475302 ATGA-ATATAAT
1 ATTATAT-TAAT
10475313 A-TATGATTAAT
1 ATTAT-ATTAAT
*
10475324 ATAATATT--T
1 ATTATATTAAT
10475333 ATTA-A-T-AT
1 ATTATATTAAT
* *
10475341 ATTTTATGAAT
1 ATTATATTAAT
* *
10475352 ATAATA-TATT
1 ATTATATTAAT
10475362 ATTATATTAAT
1 ATTATATTAAT
* *
10475373 ATAATATTTAT
1 ATTATATTAAT
*
10475384 GAATATATTAAT
1 -ATTATATTAAT
* *
10475396 -TCATTAGTAAT
1 ATTA-TATTAAT
10475407 A-TATTATTAAT
1 ATTA-TATTAAT
* **
10475418 ATGATATTTGTT
1 ATTATA-TTAAT
* *
10475430 AATATATTATT
1 ATTATATTAAT
* *
10475441 ATTTTCATACAAT
1 ATTAT-AT-TAAT
10475454 ATT-TATT-AT
1 ATTATATTAAT
10475463 ATTA-ATATAAT
1 ATTATAT-TAAT
10475474 ATTATATTAAGAT
1 ATTATATT-A-AT
*
10475487 AATATATTAAT
1 ATTATATTAAT
10475498 A--A-A-TAAT
1 ATTATATTAAT
*
10475505 ATT-TATGAAT
1 ATTATATTAAT
*
10475515 A-TATTATTTAT
1 ATTA-TATTAAT
*
10475526 ATGATA-TAGAT
1 ATTATATTA-AT
* *
10475537 ATAATA-TATT
1 ATTATATTAAT
10475547 ATT-TA-TAAT
1 ATTATATTAAT
10475556 ATT-TATTAAT
1 ATTATATTAAT
*
10475566 ATAATATTAATAT
1 ATTATATT-A-AT
10475579 ATTATGAATATAAT
1 ATTAT--AT-TAAT
10475593 ATT-TATTAAT
1 ATTATATTAAT
* *
10475603 A-TATTGTTTAT
1 ATTA-TATTAAT
* *
10475614 TTTATAAT-AT
1 ATTATATTAAT
**
10475624 ATTATATATTTT
1 ATTATAT-TAAT
*
10475636 ATTA-ATAATAT
1 ATTATATTA-AT
10475647 ATTATATTAAT
1 ATTATATTAAT
10475658 ATGT-TATT-AT
1 AT-TATATTAAT
*
10475668 ATTATATTGAT
1 ATTATATTAAT
*
10475679 AATATATTGAAT
1 ATTATATT-AAT
10475691 A-TA-A-T-AT
1 ATTATATTAAT
10475698 ATTATATTAAT
1 ATTATATTAAT
* *
10475709 AATATGTTAAT
1 ATTATATTAAT
*
10475720 A-AATATT-AT
1 ATTATATTAAT
10475729 ATTA
1 ATTA
10475733 AGAGAATATA
Statistics
Matches: 344, Mismatches: 68, Indels: 117
0.65 0.13 0.22
Matches are distributed among these distances:
7 9 0.03
8 9 0.03
9 42 0.12
10 66 0.19
11 145 0.42
12 43 0.12
13 21 0.06
14 5 0.01
15 3 0.01
16 1 0.00
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.51
Consensus pattern (11 bp):
ATTATATTAAT
Found at i:10475974 original size:11 final size:11
Alignment explanation
Indices: 10475958--10475996 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
10475948 TTTCAAATTC
*
10475958 AATAAATTGAA
1 AATAAAATGAA
10475969 AATAAAATGAA
1 AATAAAATGAA
*
10475980 AATAAAA-CAA
1 AATAAAATGAA
10475990 AATAAAA
1 AATAAAA
10475997 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (11 bp):
AATAAAATGAA
Found at i:10494372 original size:28 final size:31
Alignment explanation
Indices: 10494340--10494402 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
10494330 GTTGGATCCG
*
10494340 CATGCCATG-CCC-A-TAATAAGGCCCAATA
1 CATGCCATGTCCCAATTAATAAGACCCAATA
*
10494368 CATG-CATGTCCCAATTAATAAGACCTAATA
1 CATGCCATGTCCCAATTAATAAGACCCAATA
10494398 CATGC
1 CATGC
10494403 ATTAAGCCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 4 0.14
28 7 0.24
29 1 0.03
30 17 0.59
ACGTcount: A:0.37, C:0.29, G:0.13, T:0.22
Consensus pattern (31 bp):
CATGCCATGTCCCAATTAATAAGACCCAATA
Found at i:10495062 original size:17 final size:19
Alignment explanation
Indices: 10495040--10495074 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
10495030 TGTTGTCCCT
10495040 TTATTTT-TA-ATATTTTA
1 TTATTTTATACATATTTTA
10495057 TTATTTTATACATATTTT
1 TTATTTTATACATATTTT
10495075 TTAGATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 2 0.12
19 7 0.44
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (19 bp):
TTATTTTATACATATTTTA
Found at i:10495666 original size:41 final size:41
Alignment explanation
Indices: 10495609--10495690 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
10495599 TACAAGAGTC
10495609 TTTAACTACCTACTTTGAAACATCAAATCCAGTACGATATG
1 TTTAACTACCTACTTTGAAACATCAAATCCAGTACGATATG
*
10495650 TTTAACTACCTACTTTGAAACATCAAATCCAGTATGATATG
1 TTTAACTACCTACTTTGAAACATCAAATCCAGTACGATATG
10495691 AGTTCCTCAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.33
Consensus pattern (41 bp):
TTTAACTACCTACTTTGAAACATCAAATCCAGTACGATATG
Found at i:10499210 original size:30 final size:30
Alignment explanation
Indices: 10499176--10499232 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
10499166 GATGTAAAGA
10499176 AATTGTTGATCAAATTGGCAATGTGGCCTT
1 AATTGTTGATCAAATTGGCAATGTGGCCTT
10499206 AATTGTTGATCAAATTGGCAATGTGGC
1 AATTGTTGATCAAATTGGCAATGTGGC
10499233 AGTAAGGCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (30 bp):
AATTGTTGATCAAATTGGCAATGTGGCCTT
Found at i:10499510 original size:69 final size:69
Alignment explanation
Indices: 10499373--10499510 Score: 168
Period size: 69 Copynumber: 2.0 Consensus size: 69
10499363 AGCTAACTTC
* * *** ***
10499373 AGGTGTTTTCGGTTCATACCGGGATGACTAGCTTTTGTAAGGTCAACATTCTCCAAAATGGGACA
1 AGGTGTTCTAGGTTCATACCCAAATGACTAGCTTTTGTAAGGTCAACATTCTCCAAAATCAAACA
10499438 AAAA
66 AAAA
* * * *
10499442 AGGTGTTCTAGGTTCATACCCAAATGATTAGCTTTTGTAGGGTCAACATTCTCTAAAATCAAAGA
1 AGGTGTTCTAGGTTCATACCCAAATGACTAGCTTTTGTAAGGTCAACATTCTCCAAAATCAAACA
10499507 AAAA
66 AAAA
10499511 CTGTTAAGAT
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
69 57 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (69 bp):
AGGTGTTCTAGGTTCATACCCAAATGACTAGCTTTTGTAAGGTCAACATTCTCCAAAATCAAACA
AAAA
Found at i:10500394 original size:14 final size:14
Alignment explanation
Indices: 10500375--10500401 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10500365 ACTCTTAAAG
10500375 AATTACATTTTGTT
1 AATTACATTTTGTT
10500389 AATTACATTTTGT
1 AATTACATTTTGT
10500402 AAGGAGTGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (14 bp):
AATTACATTTTGTT
Found at i:10500824 original size:6 final size:6
Alignment explanation
Indices: 10500815--10500851 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
10500805 TTAACACCCC
10500815 AAAAG- AAAA-A AAAA-A AAAAGA AAAAGA AAAAGA AAAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAA
10500852 CTGGATTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 13 0.43
6 17 0.57
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:10503282 original size:14 final size:15
Alignment explanation
Indices: 10503256--10503299 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
10503246 AACAATAAAA
10503256 AAAATTATAAATATT
1 AAAATTATAAATATT
*
10503271 AAAATT-TAAATATC
1 AAAATTATAAATATT
*
10503285 AAATTTATTAAATAT
1 AAAATTA-TAAATAT
10503300 AATCCCTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 12 0.48
15 6 0.24
16 7 0.28
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAATTATAAATATT
Found at i:10503834 original size:2 final size:2
Alignment explanation
Indices: 10503827--10503859 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
10503817 CTTGTACATG
10503827 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10503860 ACGAACTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10509832 original size:56 final size:56
Alignment explanation
Indices: 10509746--10509856 Score: 177
Period size: 56 Copynumber: 2.0 Consensus size: 56
10509736 CTTTATTAAG
10509746 TTTTGTACCAAGACCACTTTGATACCTTTCTAAAATGCCTACAGTCAACTGTTCCA
1 TTTTGTACCAAGACCACTTTGATACCTTTCTAAAATGCCTACAGTCAACTGTTCCA
** * * *
10509802 TTTTGTACTGAGACCACTTTGATACCTTTCTAAAATGCCTATAGTTAATTGTTCC
1 TTTTGTACCAAGACCACTTTGATACCTTTCTAAAATGCCTACAGTCAACTGTTCC
10509857 TCAAGGCAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (56 bp):
TTTTGTACCAAGACCACTTTGATACCTTTCTAAAATGCCTACAGTCAACTGTTCCA
Found at i:10511538 original size:2 final size:2
Alignment explanation
Indices: 10511531--10511567 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
10511521 TCTTCTCTTT
*
10511531 TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10511568 CAATGCTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:10513057 original size:71 final size:73
Alignment explanation
Indices: 10512982--10513268 Score: 250
Period size: 72 Copynumber: 4.0 Consensus size: 73
10512972 AAAAATTCAA
* * ** *
10512982 TTTCAAAATT-TACAATTTCAATAAAAACCA-TGCTTTTAATTTTAAAATCGTGATTTTCGTTGA
1 TTTCAAAATTCTACAATTTCAATAAAGACCAGTGTTTTTAAGATTAAAATCGTGATTTTTGTTGA
10513045 AACTATAT
66 AACTATAT
* * * * * * *
10513053 TTTCAAAATTCTATAGTTTCAA-CAAGGCCATTGTTTTTAAGATT-AAACCTATGATTTTTGTTG
1 TTTCAAAATTCTACAATTTCAATAAAGACCAGTGTTTTTAAGATTAAAATC-GTGATTTTTGTTG
10513116 AAACTATAT
65 AAACTATAT
* * * * * * *
10513125 TTTCATAATTCTATC-GTTTCAACAAGGA-TAGTGTTTTTAAGATTAAAAACTTGATTTTTGTTG
1 TTTCAAAATTCTA-CAATTTCAATAAAGACCAGTGTTTTTAAGATTAAAATCGTGATTTTTGTTG
10513188 AAACTATAT
65 AAACTATAT
* * * * * * *
10513197 TTTCAAAATTATATAATTTTAATAAAGACTA-TGTTTTTAAGGTTAAAAAT-GT-AATCTTGTTG
1 TTTCAAAATTCTACAATTTCAATAAAGACCAGTGTTTTTAAGATT-AAAATCGTGATTTTTGTTG
10513259 AAACTATAT
65 AAACTATAT
10513268 T
1 T
10513269 ATGAAAAAAA
Statistics
Matches: 175, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
71 37 0.21
72 126 0.72
73 12 0.07
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (73 bp):
TTTCAAAATTCTACAATTTCAATAAAGACCAGTGTTTTTAAGATTAAAATCGTGATTTTTGTTGA
AACTATAT
Found at i:10513099 original size:72 final size:72
Alignment explanation
Indices: 10513023--10513268 Score: 275
Period size: 72 Copynumber: 3.4 Consensus size: 72
10513013 GCTTTTAATT
* *
10513023 TTAAAATCGTGATTTTCGTTGAAACTATATTTTCAAAATTCTATAGTTTCAACAAGGCCATTGTT
1 TTAAAATCGTGATTTTTGTTGAAACTATATTTTCAAAATTCTATAGTTTCAACAAGGACATTGTT
10513088 TTTAAGA
66 TTTAAGA
* * * * * *
10513095 TT-AAACCTATGATTTTTGTTGAAACTATATTTTCATAATTCTATCGTTTCAACAAGGATAGTGT
1 TTAAAATC-GTGATTTTTGTTGAAACTATATTTTCAAAATTCTATAGTTTCAACAAGGACATTGT
10513159 TTTTAAGA
65 TTTTAAGA
* * * * * * *
10513167 TTAAAAACTTGATTTTTGTTGAAACTATATTTTCAAAATTATATAATTTTAATAAAGAC-TATGT
1 TTAAAATCGTGATTTTTGTTGAAACTATATTTTCAAAATTCTATAGTTTCAACAAGGACAT-TGT
*
10513231 TTTTAAGG
65 TTTTAAGA
* *
10513239 TTAAAAAT-GT-AATCTTGTTGAAACTATATT
1 TT-AAAATCGTGATTTTTGTTGAAACTATATT
10513269 ATGAAAAAAA
Statistics
Matches: 146, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
71 22 0.15
72 116 0.79
73 8 0.05
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.44
Consensus pattern (72 bp):
TTAAAATCGTGATTTTTGTTGAAACTATATTTTCAAAATTCTATAGTTTCAACAAGGACATTGTT
TTTAAGA
Found at i:10515308 original size:96 final size:96
Alignment explanation
Indices: 10515201--10515381 Score: 249
Period size: 96 Copynumber: 1.9 Consensus size: 96
10515191 TTTTCTCTTC
** * * *
10515201 ATTTTGAGTGTTTGTTGAGTGTTTGGTTTATC-ATGTTATACTTTGTTTT-GTCAATAATGGATA
1 ATTTTGAGTGTTTGTTGAGTGTTTGGTCAATCAAT-TTATAATTT-TTTTAATCAATAATGAATA
10515264 ATAGTTTGAATGAGATTTTTTTTTGTTAGCAAT
64 ATAGTTTGAATGAGATTTTTTTTTGTTAGCAAT
* * *
10515297 ATTTTGTGTGTTTGTTTAGTGTTTGGTCAATCAATTTATAATTTTTTTAATCAATGATGAATAAT
1 ATTTTGAGTGTTTGTTGAGTGTTTGGTCAATCAATTTATAATTTTTTTAATCAATAATGAATAAT
*
10515362 AGTTTGAATGGGATTTTTTT
66 AGTTTGAATGAGATTTTTTT
10515382 GCTGCATGTT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
95 4 0.05
96 68 0.92
97 2 0.03
ACGTcount: A:0.24, C:0.04, G:0.19, T:0.52
Consensus pattern (96 bp):
ATTTTGAGTGTTTGTTGAGTGTTTGGTCAATCAATTTATAATTTTTTTAATCAATAATGAATAAT
AGTTTGAATGAGATTTTTTTTTGTTAGCAAT
Found at i:10524414 original size:2 final size:2
Alignment explanation
Indices: 10524407--10524439 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
10524397 TTAAGGCTAA
*
10524407 AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10524440 AAAGCTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:10526624 original size:71 final size:71
Alignment explanation
Indices: 10526540--10526675 Score: 211
Period size: 71 Copynumber: 1.9 Consensus size: 71
10526530 TATCCTTATC
10526540 CCCCATTCCTGTGGGTATTTAATGGGTAAAGATAATCCCCATA-CTCATAACTTAAAAAAAAAAA
1 CCCCATTCCTGTGGGTATTTAATGGGTAAAGATAATCCCCATACCT-ATAACTTAAAAAAAAAAA
10526604 AAAAAAA
65 AAAAAAA
* * * * *
10526611 CCCCATTCTTGTGGGTATTTAATGGGTATAGGTAATCCCCATACCTATAACTTTAAAAAGAAAAA
1 CCCCATTCCTGTGGGTATTTAATGGGTAAAGATAATCCCCATACCTATAACTTAAAAAAAAAAAA
10526676 CTAAAAACTA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
71 57 0.97
72 2 0.03
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.27
Consensus pattern (71 bp):
CCCCATTCCTGTGGGTATTTAATGGGTAAAGATAATCCCCATACCTATAACTTAAAAAAAAAAAA
AAAAAA
Found at i:10526772 original size:23 final size:23
Alignment explanation
Indices: 10526735--10526822 Score: 72
Period size: 23 Copynumber: 3.5 Consensus size: 23
10526725 TTTAAGAAAA
10526735 TTTTAA-AAAATATATATTAATAT
1 TTTTAATAAAA-ATATATTAATAT
10526758 TTTTAATAAAAATATATTAAT-T
1 TTTTAATAAAAATATATTAATAT
*
10526780 TTAATTAATTTAAAATAATAATTCATATAT
1 TT--TTAA-TAAAAAT-AT-ATT-A-ATAT
10526810 TATTTAATAAAAA
1 T-TTTAATAAAAA
10526823 ATCTATATAC
Statistics
Matches: 53, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
22 3 0.06
23 16 0.30
24 8 0.15
25 6 0.11
26 2 0.04
27 3 0.06
28 6 0.11
29 6 0.11
30 2 0.04
31 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (23 bp):
TTTTAATAAAAATATATTAATAT
Found at i:10526877 original size:18 final size:18
Alignment explanation
Indices: 10526854--10526910 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
10526844 AAAAATATAT
10526854 ATAGGGTACAAGTATAGG
1 ATAGGGTACAAGTATAGG
*
10526872 ATAGGGTACAAGTATATG
1 ATAGGGTACAAGTATAGG
10526890 ATAGGGTACAAGTATAGG
1 ATAGGGTACAAGTATAGG
10526908 ATA
1 ATA
10526911 TGTGCTATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.40, C:0.05, G:0.30, T:0.25
Consensus pattern (18 bp):
ATAGGGTACAAGTATAGG
Found at i:10527645 original size:30 final size:31
Alignment explanation
Indices: 10527596--10527680 Score: 93
Period size: 30 Copynumber: 2.8 Consensus size: 31
10527586 TATTGCATTC
* * * * *
10527596 AAATAAACTCCTAAACTTTATTTTGCT-TTT
1 AAATAAATTCTTAACCTTTAATTTGATATTT
*
10527626 AAATAAGTTCTTAACCTTTAATTT-ATATTT
1 AAATAAATTCTTAACCTTTAATTTGATATTT
*
10527656 AAATAAATTCTTAATCTTTAATTTG
1 AAATAAATTCTTAACCTTTAATTTG
10527681 TACATAAATA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
29 1 0.02
30 44 0.98
ACGTcount: A:0.36, C:0.12, G:0.04, T:0.48
Consensus pattern (31 bp):
AAATAAATTCTTAACCTTTAATTTGATATTT
Found at i:10527689 original size:30 final size:30
Alignment explanation
Indices: 10527625--10527700 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
10527615 ATTTTGCTTT
* * **
10527625 TAAATAAGTTCTTAACCTTTAATTTATATT
1 TAAATAAATTCTTAATCTTTAATTTATACA
*
10527655 TAAATAAATTCTTAATCTTTAATTTGTACA
1 TAAATAAATTCTTAATCTTTAATTTATACA
* *
10527685 TAAATATACTCTTAAT
1 TAAATAAATTCTTAAT
10527701 ATATAGCAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (30 bp):
TAAATAAATTCTTAATCTTTAATTTATACA
Found at i:10527761 original size:29 final size:27
Alignment explanation
Indices: 10527721--10527794 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 27
10527711 CTTTTATTTG
* *
10527721 AAATAAAGATTTATTTGGATATAAATGAA
1 AAATAAA-ATTTATTTAGATAT-AATAAA
10527750 AAATAAATATTTATTTAGATATAATAAA
1 AAATAAA-ATTTATTTAGATATAATAAA
10527778 AACATATAAATTTATTT
1 AA-ATA-AAATTTATTT
10527795 TAAAAAATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
28 7 0.17
29 31 0.77
30 2 0.05
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.39
Consensus pattern (27 bp):
AAATAAAATTTATTTAGATATAATAAA
Found at i:10530248 original size:31 final size:31
Alignment explanation
Indices: 10530213--10530273 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
10530203 TATTTTTTAC
*
10530213 TTGCTCCAAAATTCAAAGTATGACGGTAAAT
1 TTGCTCCAAAATTCAAAATATGACGGTAAAT
* * *
10530244 TTGCTCTAAAATTTAAAATATGATGGTAAA
1 TTGCTCCAAAATTCAAAATATGACGGTAAA
10530274 ATTATATCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (31 bp):
TTGCTCCAAAATTCAAAATATGACGGTAAAT
Found at i:10540323 original size:16 final size:16
Alignment explanation
Indices: 10540304--10540358 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
10540294 TTATATTGAG
10540304 GTGAATTTATACTAAA
1 GTGAATTTATACTAAA
* * *
10540320 GTGAATTTGTACCAAG
1 GTGAATTTATACTAAA
*
10540336 GTG-ATTTAGA-TCAAA
1 GTGAATTTATACT-AAA
10540351 GTGAATTT
1 GTGAATTT
10540359 TATAACTAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
15 10 0.33
16 20 0.67
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.36
Consensus pattern (16 bp):
GTGAATTTATACTAAA
Found at i:10540793 original size:31 final size:30
Alignment explanation
Indices: 10540753--10540822 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
10540743 TTGCAATGCG
* * *
10540753 AGCTCTTTTAATGGCTACTTTTATAAAAGTA
1 AGCTTTTTTAAAGGC-ACTTTTATAAAACTA
* * *
10540784 AGCTTTTTTAAAGGCATTTTTGTCAAACTA
1 AGCTTTTTTAAAGGCACTTTTATAAAACTA
10540814 AGCTTTTTT
1 AGCTTTTTT
10540823 GCCAAGTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 20 0.61
31 13 0.39
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.46
Consensus pattern (30 bp):
AGCTTTTTTAAAGGCACTTTTATAAAACTA
Found at i:10541286 original size:29 final size:30
Alignment explanation
Indices: 10541243--10541310 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
10541233 TAAAGATGGT
* *
10541243 CTTTATGAAATAAATTTAGTTCAGCTAATT
1 CTTTATGAAATAAATTTAGCTCAGCTAATC
* *
10541273 TTTTATGAAA-AAATTTAGCTGAGCTAATC
1 CTTTATGAAATAAATTTAGCTCAGCTAATC
10541302 CTTTATGAA
1 CTTTATGAA
10541311 TGTAATTTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 24 0.73
30 9 0.27
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (30 bp):
CTTTATGAAATAAATTTAGCTCAGCTAATC
Found at i:10541439 original size:30 final size:30
Alignment explanation
Indices: 10541405--10541528 Score: 81
Period size: 30 Copynumber: 4.1 Consensus size: 30
10541395 ATGATGAAGG
* *
10541405 TTTGGCCAAACTAAGCTTTTATGAAGGCAT
1 TTTGGCCAAACTAAGCTTTTATGAAGGAAA
* ** * *
10541435 TTTGGCTAAGTTGATCTTTTATGAAGGAAA
1 TTTGGCCAAACTAAGCTTTTATGAAGGAAA
* * * *
10541465 TTTGGTCAAACT-TGTCCTTTATGAATGAAA
1 TTTGGCCAAACTAAG-CTTTTATGAAGGAAA
* * * *
10541495 TTTGGTCAAACT-GGTCCTTTATGAATGAAA
1 TTTGGCCAAACTAAG-CTTTTATGAAGGAAA
10541525 TTTG
1 TTTG
10541529 ACTGAGTTAA
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
30 77 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (30 bp):
TTTGGCCAAACTAAGCTTTTATGAAGGAAA
Found at i:10541487 original size:90 final size:90
Alignment explanation
Indices: 10541389--10541558 Score: 209
Period size: 90 Copynumber: 1.9 Consensus size: 90
10541379 GCCTAGCTAA
* * * * * * *
10541389 TCCTTTATG-ATGAAGGTTTGGCCAAACTAAG-CTTTTATGAAGGCATTTTGGCTAAGTTGATCT
1 TCCTTTATGAATGAA-ATTTGGCCAAACT-AGTCCTTTATGAAGGAAATTTGACTAAGTTAATCC
10541452 TTTATGAAGGAAATTTGGTCAAACTTG
64 TTTATGAAGGAAATTTGGTCAAACTTG
* * * *
10541479 TCCTTTATGAATGAAATTTGGTCAAACTGGTCCTTTATGAATGAAATTTGACTGAGTTAATCCTT
1 TCCTTTATGAATGAAATTTGGCCAAACTAGTCCTTTATGAAGGAAATTTGACTAAGTTAATCCTT
10541544 TATGAAGGAAATTTG
66 TATGAAGGAAATTTG
10541559 TTAGAGCTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
89 1 0.01
90 61 0.91
91 5 0.07
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (90 bp):
TCCTTTATGAATGAAATTTGGCCAAACTAGTCCTTTATGAAGGAAATTTGACTAAGTTAATCCTT
TATGAAGGAAATTTGGTCAAACTTG
Found at i:10541543 original size:30 final size:29
Alignment explanation
Indices: 10541509--10541648 Score: 111
Period size: 30 Copynumber: 4.7 Consensus size: 29
10541499 GTCAAACTGG
10541509 TCCTTTATGAATGAAATTTGACTGAGTTAA
1 TCCTTTATGAA-GAAATTTGACTGAGTTAA
* *
10541539 TCCTTTATGAAGGAAATTTG-TTAGAGCTAA
1 TCCTTTATGAA-GAAATTTGACT-GAGTTAA
* ** * *
10541569 TCTTTTATGAAGGCATTTAAGCTGAGTTGA
1 TCCTTTATGAAGAAATTTGA-CTGAGTTAA
* * * *
10541599 TCTTTTATGAAGTTATTTTGGCTGAGTTAA
1 TCCTTTATGAAG-AAATTTGACTGAGTTAA
*
10541629 TACTTTATGAAGAAAATTTG
1 TCCTTTATGAAG-AAATTTG
10541649 GCCAAGTTGA
Statistics
Matches: 85, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
29 6 0.07
30 75 0.88
31 4 0.05
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (29 bp):
TCCTTTATGAAGAAATTTGACTGAGTTAA
Found at i:10541649 original size:30 final size:28
Alignment explanation
Indices: 10541511--10541747 Score: 107
Period size: 30 Copynumber: 8.0 Consensus size: 28
10541501 CAAACTGGTC
*
10541511 CTTTATGAATGAAATTTGACTGAGTTAAT
1 CTTTATGAA-GAAATTTGGCTGAGTTAAT
* *
10541540 CCTTTATGAAGGAAATTT-GTTAGAGCTAAT
1 -CTTTATGAA-GAAATTTGGCT-GAGTTAAT
** * *
10541570 CTTTTATGAAGGCATTTAAGCTGAGTTGAT
1 C-TTTATGAAGAAATTT-GGCTGAGTTAAT
* *
10541600 CTTTTATGAAGTTATTTTGGCTGAGTTAAT
1 C-TTTATGAAG-AAATTTGGCTGAGTTAAT
** *
10541630 ACTTTATGAAGAAAATTTGGCCAAGTTGAT
1 -CTTTATGAAG-AAATTTGGCTGAGTTAAT
* * ** * *
10541660 CATTTATAAAGGAACTTTGGCCAAGTTGAG
1 C-TTTATGAA-GAAATTTGGCTGAGTTAAT
* * ** *
10541690 CTTTATAAAAGCAATTTGGCTGAACTGAT
1 CTTTAT-GAAGAAATTTGGCTGAGTTAAT
* *
10541719 CCTTTATGAAAGAAATTTGGTTAAGTTAA
1 -CTTTATG-AAGAAATTTGGCTGAGTTAA
10541748 ACCTTTTGTG
Statistics
Matches: 159, Mismatches: 37, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
29 25 0.16
30 127 0.80
31 7 0.04
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (28 bp):
CTTTATGAAGAAATTTGGCTGAGTTAAT
Found at i:10541753 original size:30 final size:30
Alignment explanation
Indices: 10541719--10541859 Score: 92
Period size: 30 Copynumber: 4.7 Consensus size: 30
10541709 CTGAACTGAT
*
10541719 CCTTTATGAAAGAAATTTGGTTAAGTTAAA
1 CCTTTATGAAAGAAATTTGGTCAAGTTAAA
* * * * *
10541749 CCTTTTGTGAAGGTAATTT-ATCCAAGTTAAT
1 CC-TTTATGAAAGAAATTTGGT-CAAGTTAAA
* ** * *
10541780 CC-TTATGAAAGAAAGTTCATCGAGTTGATA
1 CCTTTATGAAAGAAATTTGGTCAAGTT-AAA
* * *
10541810 -TTTTATGAAAGAAATTTGGTCAAATTAAG
1 CCTTTATGAAAGAAATTTGGTCAAGTTAAA
10541839 CCTTTATG-AAGAAAATTTGGT
1 CCTTTATGAAAG-AAATTTGGT
10541860 TGAACTGAGC
Statistics
Matches: 82, Mismatches: 22, Indels: 14
0.69 0.19 0.12
Matches are distributed among these distances:
29 20 0.24
30 40 0.49
31 22 0.27
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (30 bp):
CCTTTATGAAAGAAATTTGGTCAAGTTAAA
Found at i:10541871 original size:30 final size:30
Alignment explanation
Indices: 10541811--10541876 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
10541801 GAGTTGATAT
*
10541811 TTTATGAAAGAAATTTGGTCAAATTAAGCC
1 TTTATGAAAGAAATTTGGTCAAACTAAGCC
** *
10541841 TTTATG-AAGAAAATTTGGTTGAACTGAGCC
1 TTTATGAAAG-AAATTTGGTCAAACTAAGCC
10541871 TTTATG
1 TTTATG
10541877 CAAGTAGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (30 bp):
TTTATGAAAGAAATTTGGTCAAACTAAGCC
Found at i:10541947 original size:30 final size:31
Alignment explanation
Indices: 10541913--10541970 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
10541903 ATGAAAAAAA
*
10541913 TTTGACTTAGTTGAGCCTTTAT-AAAGGTAT
1 TTTGACTAAGTTGAGCCTTTATGAAAGGTAT
* *
10541943 TTTGACTAAGTTGATCTTTTATGAAAGG
1 TTTGACTAAGTTGAGCCTTTATGAAAGG
10541971 AAATTTGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.43
Consensus pattern (31 bp):
TTTGACTAAGTTGAGCCTTTATGAAAGGTAT
Found at i:10541990 original size:60 final size:59
Alignment explanation
Indices: 10541841--10541997 Score: 160
Period size: 59 Copynumber: 2.6 Consensus size: 59
10541831 AAATTAAGCC
* * *
10541841 TTTATG-AAGAAAATTTGGTTGAACTGAGCCTTTATGCAAGTAGTTTGGCTAGCTGATCT
1 TTTATGAAAGAAAATTT-GTTGAATTGAGCCTTTATGAAAGTAGTTTGACTAGCTGATCT
* * *
10541900 TTTATGAAA-AAAATTTGACTT-AGTTGAGCCTTTAT-AAAGGTATTTTGACTAAGTTGATCT
1 TTTATGAAAGAAAATTTG--TTGAATTGAGCCTTTATGAAA-GTAGTTTGACT-AGCTGATCT
* * *
10541960 TTTATGAAAGGAAATTTGTTGAATTAAGCCTTTGTGAA
1 TTTATGAAAGAAAATTTGTTGAATTGAGCCTTTATGAA
10541998 GGAAAATGGC
Statistics
Matches: 80, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
58 3 0.04
59 36 0.45
60 32 0.40
61 9 0.11
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (59 bp):
TTTATGAAAGAAAATTTGTTGAATTGAGCCTTTATGAAAGTAGTTTGACTAGCTGATCT
Found at i:10542096 original size:29 final size:30
Alignment explanation
Indices: 10542071--10542155 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 30
10542061 ATTTTGGCTT
10542071 AGCTAATC-CCTATGAAAGAAATTTGGCCA
1 AGCTAATCTCCTATGAAAGAAATTTGGCCA
* ** *
10542100 AGCTTATCTTTTATGAAAGAAATTTGACCA
1 AGCTAATCTCCTATGAAAGAAATTTGGCCA
* * *
10542130 AGCTGATC-CTTTATGAAAGTAATTTG
1 AGCTAATCTC-CTATGAAAGAAATTTG
10542156 ACAAAGTTGA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
29 7 0.15
30 40 0.85
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.33
Consensus pattern (30 bp):
AGCTAATCTCCTATGAAAGAAATTTGGCCA
Found at i:10542117 original size:30 final size:30
Alignment explanation
Indices: 10542081--10542184 Score: 138
Period size: 30 Copynumber: 3.5 Consensus size: 30
10542071 AGCTAATCCC
*
10542081 TATGAAAGAAATTTGGCCAAGCTTATCTTT
1 TATGAAAGAAATTTGACCAAGCTTATCTTT
* *
10542111 TATGAAAGAAATTTGACCAAGCTGATCCTT
1 TATGAAAGAAATTTGACCAAGCTTATCTTT
* *
10542141 TATGAAAGTAATTTGACAAAG-TTGATCTTT
1 TATGAAAGAAATTTGACCAAGCTT-ATCTTT
*
10542171 TATGAAGGAAATTT
1 TATGAAAGAAATTT
10542185 AATTAAACTG
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 1 0.02
30 63 0.98
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.36
Consensus pattern (30 bp):
TATGAAAGAAATTTGACCAAGCTTATCTTT
Found at i:10542201 original size:60 final size:60
Alignment explanation
Indices: 10542081--10542206 Score: 155
Period size: 60 Copynumber: 2.1 Consensus size: 60
10542071 AGCTAATCCC
* * * * *
10542081 TATGAAAGAAATTTGGCCAAGCTTATCTTTTATGAAAGAAATTTGACCAAGCTGATCCTT
1 TATGAAAGAAATTTGACAAAGCTTATCTTTTATGAAAGAAATTTAACCAAACTGAGCCTT
* * **
10542141 TATGAAAGTAATTTGACAAAG-TTGATCTTTTATGAAGGAAATTTAATTAAACTGAGCCTT
1 TATGAAAGAAATTTGACAAAGCTT-ATCTTTTATGAAAGAAATTTAACCAAACTGAGCCTT
10542201 TATGAA
1 TATGAA
10542207 GGCATTTTGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
59 2 0.04
60 54 0.96
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (60 bp):
TATGAAAGAAATTTGACAAAGCTTATCTTTTATGAAAGAAATTTAACCAAACTGAGCCTT
Found at i:10542305 original size:209 final size:209
Alignment explanation
Indices: 10541891--10542273 Score: 439
Period size: 209 Copynumber: 1.8 Consensus size: 209
10541881 TAGTTTGGCT
** * * *
10541891 AGCTGATCTTTTATGAAAAAAATTTGACTTAGTTGAGCCTTTATAAAGGTATTTTGACTAAGTTG
1 AGCTGATCTTTTATGAAAAAAATTTGACCAAGCTGAGCCTTTATAAAGGTAATTTGACAAAGTTG
* * * * * *
10541956 ATCTTTTATGAAAGGAAATTTGTTGAATTAAGCCTTTGTGAAGGAAAATGGCTTAAACTAATATT
66 ATCTTTTATGAAAGGAAATTTATTAAACTAAGCCTTTATGAAGGAAAATGGCTTAAACCAATACT
* * ** ** * *
10542021 TTATGAAGGAAATTTGATTGCGTTGATCCTTTGTGAAAACATTTTGGCTTAGCTAATCCCTATGA
131 TTATAAAGGAAATTTGATCGAATTGAGACTTTATGAAAACATTTTGGCTTAGCTAAACCCTATGA
10542086 AAGAAATTTGGCCA
196 AAGAAATTTGGCCA
* * *
10542100 AGCTTATCTTTTATGAAAGAAATTTGACCAAGCTGATCCTTTATGAAA-GTAATTTGACAAAGTT
1 AGCTGATCTTTTATGAAAAAAATTTGACCAAGCTGAGCCTTTAT-AAAGGTAATTTGACAAAGTT
* *** * *
10542164 GATCTTTTATG-AAGGAAATTTAATTAAACTGAGCCTTTATGAAGGCATTTTGGC-TGAGCCAAT
65 GATCTTTTATGAAAGGAAATTT-ATTAAACTAAGCCTTTATGAAGG-AAAATGGCTTAAACCAAT
* * *
10542227 CCTTTATAAAGGAAATTTTATCGAATTGAGACTTTATGAAAGCATTT
128 ACTTTATAAAGGAAATTTGATCGAATTGAGACTTTATGAAAACATTT
10542274 GGTCTAGCTA
Statistics
Matches: 141, Mismatches: 30, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
208 10 0.07
209 123 0.87
210 8 0.06
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (209 bp):
AGCTGATCTTTTATGAAAAAAATTTGACCAAGCTGAGCCTTTATAAAGGTAATTTGACAAAGTTG
ATCTTTTATGAAAGGAAATTTATTAAACTAAGCCTTTATGAAGGAAAATGGCTTAAACCAATACT
TTATAAAGGAAATTTGATCGAATTGAGACTTTATGAAAACATTTTGGCTTAGCTAAACCCTATGA
AAGAAATTTGGCCA
Found at i:10542603 original size:47 final size:47
Alignment explanation
Indices: 10542517--10542628 Score: 120
Period size: 47 Copynumber: 2.4 Consensus size: 47
10542507 AGGTGAGTCA
** *
10542517 TTATGAAGGCAATTTGTCTAGTTGAGCTCTTTTACTGAGCTATGCCTT
1 TTATGAAGATAATTTGTCTAGCTGAGCTCTTTTACTGAGCTA-GCCTT
* * * *
10542565 TT-TGTAGATAATTTGTTTAGCTGAGCT-TTTTTCTTGAGCTAGGCTT
1 TTATGAAGATAATTTGTCTAGCTGAGCTCTTTTAC-TGAGCTAGCCTT
*
10542611 TTATGAAGGTAATTTGTC
1 TTATGAAGATAATTTGTC
10542629 GAGGTAAGAT
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
46 11 0.21
47 39 0.75
48 2 0.04
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.46
Consensus pattern (47 bp):
TTATGAAGATAATTTGTCTAGCTGAGCTCTTTTACTGAGCTAGCCTT
Found at i:10542793 original size:47 final size:47
Alignment explanation
Indices: 10542647--10542907 Score: 155
Period size: 47 Copynumber: 5.6 Consensus size: 47
10542637 ATTTGTCACT
* * * * ***
10542647 AAGTTGGGCATTTATGAAGGTAATTTATTAAGATGAGCTCTTTCACC
1 AAGTTGGGCCTTTATGAAGGCAATTTGTTAAGATGAGCTTTTTTGTC
* * * * * * * ** *
10542694 AAGCTGGACCTTTATGAATGCAACTTGCTAAGCTAAGCACTTTCGTC
1 AAGTTGGGCCTTTATGAAGGCAATTTGTTAAGATGAGCTTTTTTGTC
*
10542741 AAGTTAGGCCTTTATGAAGGCAATTTGTTAAGATGAGCTTTTTTGTC
1 AAGTTGGGCCTTTATGAAGGCAATTTGTTAAGATGAGCTTTTTTGTC
* ** * * * * * *
10542788 GAGTTAAGCCTTTGTAAAGGCATTTTGTCAAGGTAAGCTTTTTT-TCC
1 AAGTTGGGCCTTTATGAAGGCAATTTGTTAAGATGAGCTTTTTTGT-C
* * * ** * * * *
10542835 AAATTGGGCCATTATGTAGATAATTTATCAAAAAGAGCTTTTTTGTC
1 AAGTTGGGCCTTTATGAAGGCAATTTGTTAAGATGAGCTTTTTTGTC
* * *
10542882 GAGTTGGGCTTTTATGAAGACAATTT
1 AAGTTGGGCCTTTATGAAGGCAATTT
10542908 CATCAAGTTG
Statistics
Matches: 158, Mismatches: 54, Indels: 4
0.73 0.25 0.02
Matches are distributed among these distances:
46 1 0.01
47 156 0.99
48 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (47 bp):
AAGTTGGGCCTTTATGAAGGCAATTTGTTAAGATGAGCTTTTTTGTC
Found at i:10546626 original size:61 final size:62
Alignment explanation
Indices: 10546551--10546753 Score: 232
Period size: 63 Copynumber: 3.3 Consensus size: 62
10546541 TGATTGGAAG
*
10546551 AATGCCTTGAATAATCTCTTACAAAAAATTGAATGGGATTATTCAAGATGTTTTTGGCT-AA
1 AATGCCTTGAATAATCTCTTACAAAAAATTGAATGGGATTATTCAAGGTGTTTTTGGCTAAA
* * **** **
10546612 AATGCCTTGAATAATCCCTTTCAATTTTTATG-A-GAGGATTATTCAAGGCATTTTTGGCTAGAA
1 AATGCCTTGAATAATCTCTTACAAAAAAT-TGAATG-GGATTATTCAAGGTGTTTTTGGCTA-AA
* *
10546675 AATGCCTTGAATAATCTCTTACAAAAAATTGAATGGGATTATTCAAGGTGTTTTCTAGCCAAA
1 AATGCCTTGAATAATCTCTTACAAAAAATTGAATGGGATTATTCAAGGTGTTTT-TGGCTAAA
**
10546738 AATGTTTTGAATAATC
1 AATGCCTTGAATAATC
10546754 CAAAAAGAAA
Statistics
Matches: 114, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
60 1 0.01
61 45 0.39
62 4 0.04
63 59 0.52
64 5 0.04
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.36
Consensus pattern (62 bp):
AATGCCTTGAATAATCTCTTACAAAAAATTGAATGGGATTATTCAAGGTGTTTTTGGCTAAA
Found at i:10546714 original size:63 final size:61
Alignment explanation
Indices: 10546551--10546722 Score: 213
Period size: 61 Copynumber: 2.8 Consensus size: 61
10546541 TGATTGGAAG
***
10546551 AATGCCTTGAATAATCTCTTACAAAAAATTGAATGGGATTATTCAAGATGTTTTTGGCTAA
1 AATGCCTTGAATAATCTCTTACAAAAAATTGAATGGGATTATTCAAGGCATTTTTGGCTAA
* * ****
10546612 AATGCCTTGAATAATCCCTTTCAATTTTTATG-A-GAGGATTATTCAAGGCATTTTTGGCTAGAA
1 AATGCCTTGAATAATCTCTTACAAAAAAT-TGAATG-GGATTATTCAAGGCATTTTTGGCT--AA
10546675 AATGCCTTGAATAATCTCTTACAAAAAATTGAATGGGATTATTCAAGG
1 AATGCCTTGAATAATCTCTTACAAAAAATTGAATGGGATTATTCAAGG
10546723 TGTTTTCTAG
Statistics
Matches: 90, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
60 1 0.01
61 45 0.50
62 4 0.04
63 39 0.43
64 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (61 bp):
AATGCCTTGAATAATCTCTTACAAAAAATTGAATGGGATTATTCAAGGCATTTTTGGCTAA
Found at i:10547563 original size:47 final size:47
Alignment explanation
Indices: 10547510--10547618 Score: 139
Period size: 47 Copynumber: 2.3 Consensus size: 47
10547500 TAATTTGTTG
*
10547510 AGATGAGCTCTTTTGTTAAGCTGGA-CCTTTATGAAGGTAATTTATCA
1 AGATGAGCTCTTTTGTTAAG-TGGAGCCTTTATGAAAGTAATTTATCA
* * * * *
10547557 ATATGAGCTCTTTTGTTGAGTTGAGCCTTTATGAAAGTAATTTGTCG
1 AGATGAGCTCTTTTGTTAAGTGGAGCCTTTATGAAAGTAATTTATCA
*
10547604 AGATGAGCTTTTTTG
1 AGATGAGCTCTTTTG
10547619 CTAGCAATTT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 3 0.06
47 50 0.94
ACGTcount: A:0.25, C:0.11, G:0.23, T:0.41
Consensus pattern (47 bp):
AGATGAGCTCTTTTGTTAAGTGGAGCCTTTATGAAAGTAATTTATCA
Found at i:10547755 original size:47 final size:47
Alignment explanation
Indices: 10547698--10547816 Score: 114
Period size: 46 Copynumber: 2.6 Consensus size: 47
10547688 TCTTTTTATT
* * * *
10547698 AAGCTGGGCCTTTATAAAAGCAATTTGTCAAGTTAAACTCTTTTGCC
1 AAGCTAGGCCTTTATAAAAGCAATTTGTCAAGGTAAACTCATTTACC
* * * * * *
10547745 AAGCTAGGCCTTTA-ATAATCAATTTGTTAAGGTGAGCTCATTTACT
1 AAGCTAGGCCTTTATAAAAGCAATTTGTCAAGGTAAACTCATTTACC
* * *
10547791 AAGCTAAGCCTTAATGAAAGCAATTT
1 AAGCTAGGCCTTTATAAAAGCAATTT
10547817 TGTTGAGCTG
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
46 35 0.62
47 21 0.38
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (47 bp):
AAGCTAGGCCTTTATAAAAGCAATTTGTCAAGGTAAACTCATTTACC
Found at i:10547857 original size:29 final size:30
Alignment explanation
Indices: 10547797--10547863 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
10547787 TACTAAGCTA
* * *
10547797 AGCCTTAATGAAAGCAATTTTGTTGAGCTG
1 AGCCTTTATGAAAGCAATTTTGTCGAGATG
*
10547827 AGCCTTTATGAATGCAA-TTTGTCGAGATG
1 AGCCTTTATGAAAGCAATTTTGTCGAGATG
10547856 AGCTCTTT
1 AGC-CTTT
10547864 TGTTAAGCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 13 0.41
30 19 0.59
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (30 bp):
AGCCTTTATGAAAGCAATTTTGTCGAGATG
Found at i:10547883 original size:47 final size:47
Alignment explanation
Indices: 10547814--10547957 Score: 173
Period size: 47 Copynumber: 3.0 Consensus size: 47
10547804 ATGAAAGCAA
10547814 TTTTGTTGAGCT-GAGCCTTTATGAATGCAATTTGTCGAGATGAGCTC
1 TTTTGTTGAGCTAG-GCCTTTATGAATGCAATTTGTCGAGATGAGCTC
* * * * *
10547861 TTTTGTTAAGCTAGGCCTTTATGAACGTAATTTGTCAAGATGAGCTA
1 TTTTGTTGAGCTAGGCCTTTATGAATGCAATTTGTCGAGATGAGCTC
* * * * *
10547908 TTTCGTTGAGCTAGACCTTTACGAATGCAATTTTATCGAGTTGAGCTC
1 TTTTGTTGAGCTAGGCCTTTATGAATGCAA-TTTGTCGAGATGAGCTC
10547956 TT
1 TT
10547958 ATGCCGAACT
Statistics
Matches: 80, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
47 64 0.80
48 16 0.20
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39
Consensus pattern (47 bp):
TTTTGTTGAGCTAGGCCTTTATGAATGCAATTTGTCGAGATGAGCTC
Found at i:10550114 original size:18 final size:19
Alignment explanation
Indices: 10550082--10550117 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
10550072 AAGTTTTAAA
10550082 TATTTAATAATAAAAATAT
1 TATTTAATAATAAAAATAT
10550101 TATTTAAT-ATAAAAATA
1 TATTTAATAATAAAAATA
10550118 ATTTTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TATTTAATAATAAAAATAT
Found at i:10550128 original size:16 final size:17
Alignment explanation
Indices: 10550080--10550128 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
10550070 TTAAGTTTTA
10550080 AATATTTAATAATAAAAAT
1 AATATTT-A-AATAAAAAT
*
10550099 ATTATTTAATATAAAAAT
1 AATATTTAA-ATAAAAAT
10550117 AAT-TTTAAATAA
1 AATATTTAAATAA
10550129 TTTTTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 4 0.15
17 6 0.22
18 11 0.41
19 6 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AATATTTAAATAAAAAT
Found at i:10550329 original size:18 final size:18
Alignment explanation
Indices: 10550306--10550342 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10550296 TATCACTATT
10550306 ACAATAAT-TATAATTTTA
1 ACAATAATAT-TAATTTTA
10550324 ACAATAATATTAATTTTA
1 ACAATAATATTAATTTTA
10550342 A
1 A
10550343 TATCATCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (18 bp):
ACAATAATATTAATTTTA
Found at i:10554180 original size:17 final size:17
Alignment explanation
Indices: 10554154--10554187 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10554144 ATTGTACTTG
*
10554154 TTTTTCTTTTCCTTTAT
1 TTTTTCTTTTCATTTAT
*
10554171 TTTTTTTTTTCATTTAT
1 TTTTTCTTTTCATTTAT
10554188 AGTTTGAGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTCTTTTCATTTAT
Found at i:10554925 original size:21 final size:21
Alignment explanation
Indices: 10554901--10554940 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
10554891 AATAAAAATA
*
10554901 TTTGATTTTTTGATTTAAACG
1 TTTGATTTTTTAATTTAAACG
10554922 TTTGATTTTTTAATTTAAA
1 TTTGATTTTTTAATTTAAA
10554941 AAATTTCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.60
Consensus pattern (21 bp):
TTTGATTTTTTAATTTAAACG
Found at i:10571028 original size:8 final size:8
Alignment explanation
Indices: 10571015--10571041 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
10571005 TAGATTGAGG
10571015 TATATTTT
1 TATATTTT
10571023 TATATTTT
1 TATATTTT
10571031 TATATTTT
1 TATATTTT
10571039 TAT
1 TAT
10571042 CATGCCAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TATATTTT
Found at i:10572089 original size:27 final size:28
Alignment explanation
Indices: 10572059--10572120 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 28
10572049 TAAGATACTT
*
10572059 ATTTTTTAT-TTTTCATGA-TTTTTAAAA
1 ATTTTTTATGGTTTCA-GATTTTTTAAAA
* *
10572086 A-TTTTCATGGTTTGAGATTTTTTAAAA
1 ATTTTTTATGGTTTCAGATTTTTTAAAA
10572113 ATTTTTTA
1 ATTTTTTA
10572121 AGGAGTTCTG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
26 8 0.29
27 15 0.54
28 5 0.18
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.60
Consensus pattern (28 bp):
ATTTTTTATGGTTTCAGATTTTTTAAAA
Found at i:10572642 original size:45 final size:46
Alignment explanation
Indices: 10572577--10572682 Score: 133
Period size: 45 Copynumber: 2.3 Consensus size: 46
10572567 TACGAGAACA
* * * * * * *
10572577 TGCCTCGACCATCATTGACACAAGTTGGCCTTTGGTAT-GGGCACT
1 TGCCTCAACCACCATCGACACAAGCTAGCATTTGGTATAGGACACT
10572622 TGCCTCAACCACCATCGACACAAGCTAGCATTTGGTATAGGACACT
1 TGCCTCAACCACCATCGACACAAGCTAGCATTTGGTATAGGACACT
*
10572668 TGCCTCAATCACCAT
1 TGCCTCAACCACCAT
10572683 TGGCACATGC
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
45 32 0.62
46 20 0.38
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (46 bp):
TGCCTCAACCACCATCGACACAAGCTAGCATTTGGTATAGGACACT
Found at i:10576884 original size:19 final size:20
Alignment explanation
Indices: 10576855--10576895 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
10576845 ATCTTTCTCA
*
10576855 CTCAGGCCCTTACCCCTAGG
1 CTCAGGCCCTTACCCATAGG
10576875 CTCA-GCCCTTACCCATAGG
1 CTCAGGCCCTTACCCATAGG
10576894 CT
1 CT
10576896 GTAGAGACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.17, C:0.44, G:0.17, T:0.22
Consensus pattern (20 bp):
CTCAGGCCCTTACCCATAGG
Found at i:10594479 original size:21 final size:21
Alignment explanation
Indices: 10594453--10594515 Score: 126
Period size: 21 Copynumber: 3.0 Consensus size: 21
10594443 AAGAGAGTAG
10594453 GTGTGCGTGATGGGCTTGTCA
1 GTGTGCGTGATGGGCTTGTCA
10594474 GTGTGCGTGATGGGCTTGTCA
1 GTGTGCGTGATGGGCTTGTCA
10594495 GTGTGCGTGATGGGCTTGTCA
1 GTGTGCGTGATGGGCTTGTCA
10594516 TTGGGTACAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.10, C:0.14, G:0.43, T:0.33
Consensus pattern (21 bp):
GTGTGCGTGATGGGCTTGTCA
Found at i:10612768 original size:51 final size:51
Alignment explanation
Indices: 10612712--10612817 Score: 160
Period size: 51 Copynumber: 2.1 Consensus size: 51
10612702 AGAGAGGTGC
* *
10612712 AATTTAAATTTGATAAGTCCTGTATGATTGCTTTTAGGATCCT-AACAGAGA
1 AATTTAAATTTGATAAGTCCTGTATGATTGCCTTTAGGACCCTGAA-AGAGA
* *
10612763 AATTTAAATTTGATGAGTCTTGTATGATTGCCTTTAGGACCCTGAAAGAGA
1 AATTTAAATTTGATAAGTCCTGTATGATTGCCTTTAGGACCCTGAAAGAGA
10612814 AATT
1 AATT
10612818 GATTACTGCA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
51 48 0.96
52 2 0.04
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (51 bp):
AATTTAAATTTGATAAGTCCTGTATGATTGCCTTTAGGACCCTGAAAGAGA
Found at i:10622593 original size:13 final size:13
Alignment explanation
Indices: 10622575--10622605 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
10622565 TGCCAGATGC
10622575 TGGCACTTGGTGT
1 TGGCACTTGGTGT
*
10622588 TGGCACTTTGTGT
1 TGGCACTTGGTGT
10622601 TGGCA
1 TGGCA
10622606 ATTGATACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.16, G:0.35, T:0.39
Consensus pattern (13 bp):
TGGCACTTGGTGT
Found at i:10628759 original size:21 final size:21
Alignment explanation
Indices: 10628735--10628781 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
10628725 CTAGAAGATG
10628735 AGGCTCCAGCACCTGCAGCCA
1 AGGCTCCAGCACCTGCAGCCA
10628756 AGGCTCCAGCACCTGCAGCCA
1 AGGCTCCAGCACCTGCAGCCA
10628777 AGGCT
1 AGGCT
10628782 TGAGTACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.40, G:0.26, T:0.11
Consensus pattern (21 bp):
AGGCTCCAGCACCTGCAGCCA
Found at i:10629921 original size:18 final size:18
Alignment explanation
Indices: 10629898--10629934 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
10629888 CCACGGGCAT
10629898 GTAGGATGATGCTACTAA
1 GTAGGATGATGCTACTAA
10629916 GTAGGATGATGCTACTAA
1 GTAGGATGATGCTACTAA
10629934 G
1 G
10629935 GTAAGCACTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (18 bp):
GTAGGATGATGCTACTAA
Found at i:10635589 original size:83 final size:83
Alignment explanation
Indices: 10635451--10635607 Score: 244
Period size: 83 Copynumber: 1.9 Consensus size: 83
10635441 TGTTCCCATG
* * *
10635451 CTCAATGGGCCCTTCGAGGTGTGTAACACACACTGGTGCAAGGTGTGCAACACTTATGTCTAGGC
1 CTCAACGGGCCCTTCAAGGTGTGCAACACACACTGGTGCAAGGTGTGCAACACTTATGTCTAGGC
10635516 CATTACCTTCTTCCCGCA
66 CATTACCTTCTTCCCGCA
* * *
10635534 CTCAACGGGCCCTTCAAGGTGTGCAGCACACA-TAGGTGCAAGGTGTGTAATACTTATGTCTAGG
1 CTCAACGGGCCCTTCAAGGTGTGCAACACACACT-GGTGCAAGGTGTGCAACACTTATGTCTAGG
10635598 CCATTACCTT
65 CCATTACCTT
10635608 TCTTTAATAA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
82 1 0.01
83 66 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (83 bp):
CTCAACGGGCCCTTCAAGGTGTGCAACACACACTGGTGCAAGGTGTGCAACACTTATGTCTAGGC
CATTACCTTCTTCCCGCA
Found at i:10638665 original size:28 final size:28
Alignment explanation
Indices: 10638612--10638665 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
10638602 AACCTATGAT
* *
10638612 AGTTGGTATCAAAGTAGGTTTCAATTGA
1 AGTTGGTATCAAAGTAGCTCTCAATTGA
10638640 AGTTGGTATCAAAGTAAGCTCT-AATT
1 AGTTGGTATCAAAGT-AGCTCTCAATT
10638666 ATGGTAGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.35
Consensus pattern (28 bp):
AGTTGGTATCAAAGTAGCTCTCAATTGA
Found at i:10656677 original size:3 final size:3
Alignment explanation
Indices: 10656669--10656869 Score: 116
Period size: 3 Copynumber: 67.3 Consensus size: 3
10656659 TCGATTTTTG
* ** *
10656669 TTA TTA TTA TTA TT- TTCA TTA TTA TTA GTA TTA TTA CCA -TA GTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
10656713 -TA GTA TGCTA TT- TTA TTA -TA GTA TAGA TTA TTA TTA -TA GTGTA
1 TTA TTA T--TA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA -T-TA
* * *
10656756 ATA TTA -TA TTA TATG TTA TTA TTA TTA -TA TTA TATG TTA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * * * *
10656801 TTA -CA GT- TTA TCA GTA TTA TTA CTTT TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
10656845 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
10656870 CATTGTTTTT
Statistics
Matches: 155, Mismatches: 24, Indels: 38
0.71 0.11 0.18
Matches are distributed among these distances:
2 17 0.11
3 123 0.79
4 10 0.06
5 5 0.03
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:10657698 original size:12 final size:12
Alignment explanation
Indices: 10657683--10657721 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
10657673 CTATTTTAAT
10657683 TTTAATTTTTTA
1 TTTAATTTTTTA
*
10657695 TTTAATTTTTGA
1 TTTAATTTTTTA
10657707 TTT-ATTTTTATA
1 TTTAATTTTT-TA
10657719 TTT
1 TTT
10657722 TGATTTTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 6 0.25
12 18 0.75
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTAATTTTTTA
Found at i:10657710 original size:24 final size:24
Alignment explanation
Indices: 10657668--10657739 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 24
10657658 TCGTATGTTT
*
10657668 TTTTTCTATTTTAATTTT-A---A
1 TTTTTATATTTTAATTTTGATTTA
10657688 TTTTT-TA-TTTAATTTTTGATTTA
1 TTTTTATATTTTAA-TTTTGATTTA
*
10657711 TTTTTATATTTTGATTTTGATTTTA
1 TTTTTATATTTTAATTTTGA-TTTA
10657736 TTTT
1 TTTT
10657740 ATTTTTCAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
18 5 0.12
19 6 0.14
20 6 0.14
23 6 0.14
24 8 0.19
25 12 0.28
ACGTcount: A:0.21, C:0.01, G:0.04, T:0.74
Consensus pattern (24 bp):
TTTTTATATTTTAATTTTGATTTA
Found at i:10657716 original size:18 final size:18
Alignment explanation
Indices: 10657676--10657727 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
10657666 TTTTTTTCTA
* *
10657676 TTTTAA-TTTTAATTTTT
1 TTTTAATTTTTGATTTAT
10657693 TATTTAATTTTTGATTTAT
1 T-TTTAATTTTTGATTTAT
10657712 TTTT-ATATTTTGATTT
1 TTTTAAT-TTTTGATTT
10657728 TGATTTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 3 0.10
18 17 0.57
19 10 0.33
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (18 bp):
TTTTAATTTTTGATTTAT
Found at i:10657740 original size:24 final size:24
Alignment explanation
Indices: 10657675--10657745 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
10657665 TTTTTTTTCT
* *
10657675 ATTTTAATTTTAATTTTTTA-TTTA
1 ATTTTGATTTT-ATTTTATATTTTA
*
10657699 ATTTTTGA-TTTATTTTTATATTTTG
1 A-TTTTGATTTTA-TTTTATATTTTA
10657724 ATTTTGATTTTATTTTAT-TTTT
1 ATTTTGATTTTATTTTATATTTT
10657746 CAATCTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
23 5 0.12
24 22 0.55
25 13 0.32
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (24 bp):
ATTTTGATTTTATTTTATATTTTA
Found at i:10657774 original size:13 final size:13
Alignment explanation
Indices: 10657751--10657785 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
10657741 TTTTTCAATC
10657751 TTTTTACTTATTGA
1 TTTTTA-TTATTGA
*
10657765 TTTTTATTATTTA
1 TTTTTATTATTGA
10657778 TTTTTATT
1 TTTTTATT
10657786 GAGTAACTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (13 bp):
TTTTTATTATTGA
Found at i:10663489 original size:120 final size:120
Alignment explanation
Indices: 10663297--10663618 Score: 328
Period size: 120 Copynumber: 2.7 Consensus size: 120
10663287 CCTAGTTCAT
* * * * * *
10663297 ATCATTTTCTTAATTTACGATTTTATCTCGATCATTCATTTTTCACCTCAACTCGATCCTAGTCA
1 ATCATTTTCTTAACTTACGATTTAATCTCGATCATTCA-TCTTCACCTTAACTCGATCCTGGTAA
* * *
10663362 CTCTATCTTTTAGACTTACG-GGTTTA-TCCCAATCATTCGATCTTAACTCAGTCCAA
65 CTTTATCTTTTAGACTT--GTAGCTTAGTCCCAATCATTCGATCTTAACTCAGTCCAA
* * * *
10663418 ATCATTTT-TTTACTTACGATTTAATTTCGATCATTCATCTTCGACCTTTACTCGGTCCTGGTAA
1 ATCATTTTCTTAACTTACGATTTAATCTCGATCATTCATCTTC-ACCTTAACTCGATCCTGGTAA
* * * * *
10663482 TTTTATCTTTTAGACTTGTAGCTTAGTCTCGATCATTCGATCTTAGCTCAGTCCAG
65 CTTTATCTTTTAGACTTGTAGCTTAGTCCCAATCATTCGATCTTAACTCAGTCCAA
* * * * * * * *
10663538 ATCATTTTCTTGACTTACAATTCAATCCCAATCATTCATCTTCAACCTTGACTCGATCTTGGTAG
1 ATCATTTTCTTAACTTACGATTTAATCTCGATCATTCATCTTC-ACCTTAACTCGATCCTGGTAA
10663603 CTTTAT-TTTCTAGACT
65 CTTTATCTTT-TAGACT
10663619 CACAATTTCA
Statistics
Matches: 166, Mismatches: 30, Indels: 10
0.81 0.15 0.05
Matches are distributed among these distances:
118 1 0.01
119 8 0.05
120 93 0.56
121 64 0.39
ACGTcount: A:0.23, C:0.24, G:0.10, T:0.43
Consensus pattern (120 bp):
ATCATTTTCTTAACTTACGATTTAATCTCGATCATTCATCTTCACCTTAACTCGATCCTGGTAAC
TTTATCTTTTAGACTTGTAGCTTAGTCCCAATCATTCGATCTTAACTCAGTCCAA
Found at i:10663618 original size:121 final size:120
Alignment explanation
Indices: 10663393--10663618 Score: 301
Period size: 121 Copynumber: 1.9 Consensus size: 120
10663383 GTTTATCCCA
* * * ** *
10663393 ATCATTCGATCTTAACTCAGTCCAAATCATTTTTTTACTTACGATTTAATTTCGATCATTCATCT
1 ATCATTCGATCTTAACTCAGTCCAAATCATTTTTTGACTTACAATTCAATCCCAATCATTCATCT
* * * *
10663458 TCGACCTTTACTCGGTCCTGGTAATTTTATCTTTTAGACTTGTAGCTTAGTCTCG
66 TCAACCTTGACTCGATCCTGGTAACTTTATCTTTTAGACTTGTAGCTTAGTCTCG
* *
10663513 ATCATTCGATCTTAGCTCAGTCCAGATCATTTTCTTGACTTACAATTCAATCCCAATCATTCATC
1 ATCATTCGATCTTAACTCAGTCCAAATCATTTT-TTGACTTACAATTCAATCCCAATCATTCATC
* *
10663578 TTCAACCTTGACTCGATCTTGGTAGCTTTAT-TTTCTAGACT
65 TTCAACCTTGACTCGATCCTGGTAACTTTATCTTT-TAGACT
10663619 CACAATTTCA
Statistics
Matches: 90, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
120 34 0.38
121 56 0.62
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.42
Consensus pattern (120 bp):
ATCATTCGATCTTAACTCAGTCCAAATCATTTTTTGACTTACAATTCAATCCCAATCATTCATCT
TCAACCTTGACTCGATCCTGGTAACTTTATCTTTTAGACTTGTAGCTTAGTCTCG
Found at i:10663944 original size:25 final size:25
Alignment explanation
Indices: 10663911--10663960 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
10663901 TTATCTTTTA
*
10663911 GATTGTGGCTCAGTCTCAATCATTT
1 GATTGTGGCTCAATCTCAATCATTT
*
10663936 GATTTTGGCTCAATCTCAATCATTT
1 GATTGTGGCTCAATCTCAATCATTT
10663961 TTCAAACCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (25 bp):
GATTGTGGCTCAATCTCAATCATTT
Done.