Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 47 of 130
Found at i:11188008 original size:44 final size:45
Alignment explanation
Indices: 11187924--11188010 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 45
11187914 AATTAGTAGT
* * * * *
11187924 TTAATAATAATATAATAATACTAATTACAATTGATTATTAAATTG
1 TTAATAATAATATAATAATAATAATAAAAATTAATCATTAAATTG
*
11187969 TTAATAATAA-ATAATCATAATAATAAAAATTAATCATTAAAT
1 TTAATAATAATATAATAATAATAATAAAAATTAATCATTAAAT
11188011 AATTAAATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 26 0.72
45 10 0.28
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (45 bp):
TTAATAATAATATAATAATAATAATAAAAATTAATCATTAAATTG
Found at i:11190221 original size:19 final size:18
Alignment explanation
Indices: 11190184--11190222 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
11190174 AACTAATTTA
*
11190184 TATTAAATTATTATAATT
1 TATTAAATAATTATAATT
*
11190202 TATTAAATAAATTATTATT
1 TATTAAAT-AATTATAATT
11190221 TA
1 TA
11190223 ATCTTAGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TATTAAATAATTATAATT
Found at i:11190709 original size:20 final size:20
Alignment explanation
Indices: 11190669--11190709 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
11190659 TATTAAATAT
*
11190669 TTAAAATAATATAATTATTA
1 TTAAAATAATATAAATATTA
11190689 TTAAAATTAATATAAAT-TTA
1 TTAAAA-TAATATAAATATTA
11190709 T
1 T
11190710 AGTCATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTAAAATAATATAAATATTA
Found at i:11191927 original size:19 final size:18
Alignment explanation
Indices: 11191863--11191936 Score: 53
Period size: 19 Copynumber: 4.0 Consensus size: 18
11191853 TTTTATATTT
11191863 TATAATTAT-AATTTAATA
1 TATAATTATAAATTT-ATA
* * *
11191881 TAAAATAATATTATTT-TA
1 TATAATTATA-AATTTATA
*
11191899 TTATATTTATAAATTGTATA
1 -TATAATTATAAATT-TATA
*
11191919 TATAATTATTAATTTATA
1 TATAATTATAAATTTATA
11191937 ATCCAATAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
18 16 0.38
19 20 0.48
20 6 0.14
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (18 bp):
TATAATTATAAATTTATA
Found at i:11192209 original size:23 final size:26
Alignment explanation
Indices: 11192178--11192225 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 26
11192168 ATTAATATAA
11192178 TTAACATTAAGTTAA-T-ATTAAAAT
1 TTAACATTAAGTTAATTAATTAAAAT
*
11192202 TTAA-ATTAATTTAATTAATTAAAA
1 TTAACATTAAGTTAATTAATTAAAA
11192226 GAATTTGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
24 5 0.24
25 7 0.33
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
TTAACATTAAGTTAATTAATTAAAAT
Found at i:11192302 original size:16 final size:17
Alignment explanation
Indices: 11192251--11192300 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 17
11192241 AAAAAATGAT
* *
11192251 AATTAA-TTAAAGATTC
1 AATTAATTTAAATATTA
**
11192267 AATTAATTTATCT-TTA
1 AATTAATTTAAATATTA
11192283 AATTAATTTAAATATTA
1 AATTAATTTAAATATTA
11192300 A
1 A
11192301 TTGCATATAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
16 19 0.73
17 7 0.27
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (17 bp):
AATTAATTTAAATATTA
Found at i:11192550 original size:12 final size:11
Alignment explanation
Indices: 11192513--11192783 Score: 62
Period size: 10 Copynumber: 25.1 Consensus size: 11
11192503 TATATACATT
11192513 ATTAT-TTA-A
1 ATTATATTATA
11192522 ATTATATTATA
1 ATTATATTATA
*
11192533 ACTTATATTATCC
1 A-TTATATTAT-A
11192546 ATTATA--ATA
1 ATTATATTATA
11192555 ATTATA-T-TA
1 ATTATATTATA
*
11192564 ATTAT-TAATA
1 ATTATATTATA
* * *
11192574 CTTA-GTTAAA
1 ATTATATTATA
**
11192584 ACAAT-TTA-A
1 ATTATATTATA
*
11192593 TATTATAATATAA
1 -ATTATATTAT-A
*
11192606 ATTATTATAATA
1 ATTA-TATTATA
*
11192618 ATTA-GTTATA
1 ATTATATTATA
11192628 ATATATATT-TA
1 AT-TATATTATA
*
11192639 ATATATATTAAA
1 AT-TATATTATA
11192651 ATTATATATATA
1 ATTATAT-TATA
*
11192663 ATTTAATTGTTATA
1 A-TT-A-TATTATA
11192677 TATTA-A-TATAA
1 -ATTATATTAT-A
* *
11192688 ATAAAATTATA
1 ATTATATTATA
*
11192699 ATTTTATAATATAA
1 A--TTATATTAT-A
* * *
11192713 ATTAAATCATT
1 ATTATATTATA
*
11192724 ATTAT-TTATT
1 ATTATATTATA
11192734 ATTATATTAT-
1 ATTATATTATA
*
11192744 ATTATAATATA
1 ATTATATTATA
11192755 A-TATA--A-A
1 ATTATATTATA
*
11192762 ATTATATTATT
1 ATTATATTATA
11192773 ATT-TATTATA
1 ATTATATTATA
11192783 A
1 A
11192784 AATATTATTA
Statistics
Matches: 194, Mismatches: 34, Indels: 67
0.66 0.12 0.23
Matches are distributed among these distances:
7 2 0.01
8 5 0.03
9 19 0.10
10 62 0.32
11 38 0.20
12 41 0.21
13 15 0.08
14 9 0.05
15 3 0.02
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (11 bp):
ATTATATTATA
Found at i:11192635 original size:107 final size:107
Alignment explanation
Indices: 11192561--11192790 Score: 242
Period size: 110 Copynumber: 2.2 Consensus size: 107
11192551 AATAATTATA
* *
11192561 TTAATTATTA-ATACTTAGT-TAAA-ACAATT-TAATATTATAATATAAATTATTATAATAATTA
1 TTAATTATTATATA-TTAATATAAATAAAATTATAATATTATAATATAAATTATTATAATAATTA
11192622 GTTATAATATATATTTAATATATATTAAAATTATATATATAAT
65 GTTATAATATATATTTAATATATATTAAAATTATATATATAAT
* * * * *
11192665 TTAATTGTTATATATTAATATAAATAAAATTATAATTTTATAATATAAATTAAATCATTATTATT
1 TTAATTATTATATATTAATATAAATAAAATTATAATATTATAATATAAATT--ATTA-TAATAAT
* *
11192730 TA-TTATTATATTATATTATAATATA-ATATAAAATTATAT-TATTAT
63 TAGTTATAATA-TATATT-TAATATATAT-TAAAATTATATATATAAT
* *
11192775 TT-ATTATAAAATATTA
1 TTAATTATTATATATTA
11192791 TTAACTTATA
Statistics
Matches: 104, Mismatches: 12, Indels: 15
0.79 0.09 0.11
Matches are distributed among these distances:
104 13 0.12
105 7 0.07
106 5 0.05
107 18 0.17
109 21 0.20
110 22 0.21
111 18 0.17
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (107 bp):
TTAATTATTATATATTAATATAAATAAAATTATAATATTATAATATAAATTATTATAATAATTAG
TTATAATATATATTTAATATATATTAAAATTATATATATAAT
Found at i:11192719 original size:30 final size:30
Alignment explanation
Indices: 11192653--11192719 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
11192643 ATATTAAAAT
* * *
11192653 TATATATATAATTTAATTGTTATATATTAA
1 TATAAATAAAATTTAATTGTTATATATAAA
11192683 TATAAATAAAATTATAATT-TTATAATATAAA
1 TATAAATAAAATT-TAATTGTTAT-ATATAAA
11192714 T-TAAAT
1 TATAAAT
11192720 CATTATTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 20 0.62
31 12 0.38
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (30 bp):
TATAAATAAAATTTAATTGTTATATATAAA
Found at i:11192755 original size:43 final size:42
Alignment explanation
Indices: 11192702--11192806 Score: 113
Period size: 43 Copynumber: 2.4 Consensus size: 42
11192692 AATTATAATT
**
11192702 TTATAATATAAATTAAATCATTATTATT-TATTATTATATTATA
1 TTATAATATAAATTAAATCA-TATTATTAT-TTATTATAAAATA
* *
11192745 TTATAATATAATATAAAATTATATTATTATTTATTATAAAATA
1 TTATAATATAA-ATTAAATCATATTATTATTTATTATAAAATA
11192788 TTATTAACTTATAAATTAA
1 TTA-TAA--TATAAATTAA
11192807 TAATTAATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
43 32 0.62
44 11 0.21
45 4 0.08
46 5 0.10
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (42 bp):
TTATAATATAAATTAAATCATATTATTATTTATTATAAAATA
Found at i:11192791 original size:17 final size:18
Alignment explanation
Indices: 11192769--11192802 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
11192759 AAAATTATAT
*
11192769 TATTATTTA-TTATAAAA
1 TATTATTAACTTATAAAA
11192786 TATTATTAACTTATAAA
1 TATTATTAACTTATAAA
11192803 TTAATAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTATTAACTTATAAAA
Found at i:11192793 original size:23 final size:23
Alignment explanation
Indices: 11192721--11192786 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 23
11192711 AAATTAAATC
* *
11192721 ATTATTATTTATTATTATATTAT
1 ATTATTATTTATTATAAAATTAT
* * *
11192744 ATTATAATATAATATAAAATTAT
1 ATTATTATTTATTATAAAATTAT
11192767 ATTATTATTTATTATAAAAT
1 ATTATTATTTATTATAAAAT
11192787 ATTATTAACT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
ATTATTATTTATTATAAAATTAT
Found at i:11193148 original size:4 final size:4
Alignment explanation
Indices: 11193131--11193222 Score: 59
Period size: 4 Copynumber: 22.5 Consensus size: 4
11193121 ATTTTAAATC
*
11193131 TAAT TAAT ACAAT TAAT T-AT ATAAT TAAT TAA- TAAT TATAT ATAA-
1 TAAT TAAT -TAAT TAAT TAAT -TAAT TAAT TAAT TAAT TA-AT -TAAT
* *
11193176 TAAT TAAT T-AT ATAAT TTAT CTAA- TAAT TTAT TAAT TAAT TATAT TA
1 TAAT TAAT TAAT -TAAT TAAT -TAAT TAAT TAAT TAAT TAAT TA-AT TA
11193223 TAAATAATTA
Statistics
Matches: 70, Mismatches: 6, Indels: 23
0.71 0.06 0.23
Matches are distributed among these distances:
3 13 0.19
4 39 0.56
5 16 0.23
6 2 0.03
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (4 bp):
TAAT
Found at i:11193158 original size:12 final size:12
Alignment explanation
Indices: 11193131--11193235 Score: 87
Period size: 12 Copynumber: 8.8 Consensus size: 12
11193121 ATTTTAAATC
*
11193131 TAATTAATACAAT
1 TAATT-ATATAAT
11193144 TAATTATATAAT
1 TAATTATATAAT
11193156 TAATTA-ATAAT
1 TAATTATATAAT
11193167 T-ATATATAATAAT
1 TAAT-TAT-ATAAT
11193180 TAATTATATAAT
1 TAATTATATAAT
*
11193192 TTATCTA-ATAAT
1 TAAT-TATATAAT
*
11193204 TTATTA-ATTAAT
1 TAATTATA-TAAT
11193216 TATATTATA-AA-
1 TA-ATTATATAAT
11193227 TAATTATAT
1 TAATTATAT
11193236 TTTAATATAA
Statistics
Matches: 80, Mismatches: 3, Indels: 20
0.78 0.03 0.19
Matches are distributed among these distances:
10 8 0.10
11 13 0.16
12 36 0.45
13 20 0.25
14 3 0.04
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATTATATAAT
Found at i:11193167 original size:32 final size:33
Alignment explanation
Indices: 11193131--11193220 Score: 103
Period size: 36 Copynumber: 2.7 Consensus size: 33
11193121 ATTTTAAATC
*
11193131 TAATTAATACAATTAATTATATAATTAAT-TAA
1 TAATTAATATAATTAATTATATAATTAATCTAA
*
11193163 TAATTATATATAATAATTAATTATATAATTTATCTAA
1 TAA-T-TA-AT-ATAATTAATTATATAATTAATCTAA
*
11193200 TAATTTAT-TAATTAATTATAT
1 TAATTAATATAATTAATTATAT
11193221 TATAAATAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
32 16 0.32
33 1 0.02
34 4 0.08
35 3 0.06
36 20 0.40
37 6 0.12
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (33 bp):
TAATTAATATAATTAATTATATAATTAATCTAA
Found at i:11193183 original size:24 final size:24
Alignment explanation
Indices: 11193151--11193232 Score: 103
Period size: 24 Copynumber: 3.3 Consensus size: 24
11193141 AATTAATTAT
11193151 ATAATTAATTAATAATTATATATA
1 ATAATTAATTAATAATTATATATA
*
11193175 ATAATTAATTATATAATT-TATCTA
1 ATAATTAATTA-ATAATTATATATA
*
11193199 ATAATTTATTAATTAATTATATTATAA
1 ATAATTAATTAA-TAATTATA-TAT-A
11193226 ATAATTA
1 ATAATTA
11193233 TATTTTAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
23 1 0.02
24 31 0.63
25 8 0.16
26 2 0.04
27 7 0.14
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (24 bp):
ATAATTAATTAATAATTATATATA
Found at i:11193189 original size:15 final size:15
Alignment explanation
Indices: 11193160--11193286 Score: 80
Period size: 15 Copynumber: 8.2 Consensus size: 15
11193150 TATAATTAAT
11193160 TAATAATT-A-TATA
1 TAATAATTAATTATA
11193173 TAATAATTAATTATA
1 TAATAATTAATTATA
* * *
11193188 TAATTTATCTAATAATT
1 TAA-TAAT-TAATTATA
*
11193205 TATTAATTAATTATA
1 TAATAATTAATTATA
* *
11193220 TTATAAATAATTATA
1 TAATAATTAATTATA
** *
11193235 TTTTAATATAATTATT
1 TAATAAT-TAATTATA
*
11193251 TAA-AATCTAATTTATT
1 TAATAAT-TAA-TTATA
11193267 TATATAATTAATTTATA
1 TA-ATAATTAA-TTATA
11193284 TAA
1 TAA
11193287 AATATTAATC
Statistics
Matches: 89, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
13 8 0.09
14 1 0.01
15 36 0.40
16 22 0.25
17 19 0.21
18 3 0.03
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
TAATAATTAATTATA
Found at i:11193280 original size:13 final size:13
Alignment explanation
Indices: 11193131--11193286 Score: 85
Period size: 13 Copynumber: 11.9 Consensus size: 13
11193121 ATTTTAAATC
* *
11193131 TAATTAATACAAT
1 TAATTTATATAAT
11193144 TAA-TTATATAAT
1 TAATTTATATAAT
11193156 TAA-TTA-ATAAT
1 TAATTTATATAAT
*
11193167 T-ATATATAATAAT
1 TAATTTAT-ATAAT
11193180 TAA-TTATATAAT
1 TAATTTATATAAT
* *
11193192 TTATCTA-ATAAT
1 TAATTTATATAAT
* *
11193204 TTATTAAT-TAAT
1 TAATTTATATAAT
*
11193216 TATATTATAAATAAT
1 TA-ATT-TATATAAT
11193231 TATATTTTAATATAAT
1 TA-A-TTT-ATATAAT
*
11193247 T-ATTTAAAATCTAAT
1 TAATTT---ATATAAT
*
11193262 TTATTTATATAAT
1 TAATTTATATAAT
11193275 TAATTTATATAA
1 TAATTTATATAA
11193287 AATATTAATC
Statistics
Matches: 114, Mismatches: 15, Indels: 28
0.73 0.10 0.18
Matches are distributed among these distances:
10 1 0.01
11 8 0.07
12 35 0.31
13 37 0.32
14 3 0.03
15 17 0.15
16 13 0.11
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATTTATATAAT
Found at i:11193307 original size:59 final size:61
Alignment explanation
Indices: 11193194--11193310 Score: 138
Period size: 61 Copynumber: 2.0 Consensus size: 61
11193184 TATATAATTT
*
11193194 ATCTAATAATTTATTAATTAATTATATTATAAATAATTATATTTTAATATAATTATTTAAA
1 ATCTAATAATTTATTAATTAATTATATTATAAATAATTATATTCTAATATAATTATTTAAA
*
11193255 ATCTAATTTATTTATATAATTAATT-TA-TATAAA-ATATTA-A-TCTAATCA-AATTATTT
1 ATCTAA-TAATTTAT-TAATTAATTATATTATAAATA-ATTATATTCTAAT-ATAATTATTT
11193311 TATTTCAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
59 13 0.26
60 3 0.06
61 16 0.32
62 9 0.18
63 9 0.18
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.50
Consensus pattern (61 bp):
ATCTAATAATTTATTAATTAATTATATTATAAATAATTATATTCTAATATAATTATTTAAA
Found at i:11193632 original size:13 final size:12
Alignment explanation
Indices: 11193614--11193657 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 12
11193604 TTATAAGTGG
11193614 TAATTTTAATATA
1 TAATTTTAATA-A
11193627 TAATTTTAATAA
1 TAATTTTAATAA
11193639 TAATTATT-ATAAA
1 TAATT-TTAAT-AA
11193652 TAATTT
1 TAATTT
11193658 AACTTATTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.31
13 20 0.69
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TAATTTTAATAA
Found at i:11194177 original size:20 final size:20
Alignment explanation
Indices: 11194128--11194178 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
11194118 TTATCATTAA
11194128 TAATAATTATTTAACTATAT
1 TAATAATTATTTAACTATAT
* *
11194148 TATTATTTATTATAA-TA-ATT
1 TAATAATTATT-TAACTATA-T
11194168 TAATAATTATT
1 TAATAATTATT
11194179 GAAATATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATAATTATTTAACTATAT
Found at i:11194628 original size:7 final size:7
Alignment explanation
Indices: 11194616--11194643 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
11194606 TATAAAATCA
11194616 ATTAATT
1 ATTAATT
11194623 ATTAATT
1 ATTAATT
11194630 ATTAATT
1 ATTAATT
11194637 ATTAATT
1 ATTAATT
11194644 TATTTATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTAATT
Found at i:11194770 original size:13 final size:13
Alignment explanation
Indices: 11194752--11194783 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
11194742 TGTTTATATA
11194752 AATTATTATTAAT
1 AATTATTATTAAT
11194765 AATTATTATTAAT
1 AATTATTATTAAT
*
11194778 ATTTAT
1 AATTAT
11194784 AATCAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTATTATTAAT
Found at i:11194794 original size:14 final size:14
Alignment explanation
Indices: 11194775--11194810 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
11194765 AATTATTATT
11194775 AATATTTATAATCA
1 AATATTTATAATCA
*
11194789 AATATTAATAATCA
1 AATATTTATAATCA
11194803 ATATATTT
1 A-ATATTT
11194811 TTATAACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (14 bp):
AATATTTATAATCA
Found at i:11194907 original size:32 final size:29
Alignment explanation
Indices: 11194836--11194911 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 29
11194826 CTTATATTTA
* *
11194836 AATAAGTATTATTAATTAATTATTAATAT
1 AATAAGTAATATTAATTAATTAATAATAT
* * *
11194865 TATAATTAATATTAATTATTTAATAGTATAT
1 AATAAGTAATATTAATTAATTAATA--ATAT
11194896 AATTAAGTAATATTAA
1 AA-TAAGTAATATTAA
11194912 AATTATTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 20 0.54
31 5 0.14
32 12 0.32
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (29 bp):
AATAAGTAATATTAATTAATTAATAATAT
Found at i:11195577 original size:24 final size:24
Alignment explanation
Indices: 11195550--11195599 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
11195540 ATTAACAAAT
* *
11195550 ATTATATAAATT-TATAATATATTA
1 ATTAAATAAATTAAATAA-ATATTA
*
11195574 ATTAAATTAATTAAATAAATATTA
1 ATTAAATAAATTAAATAAATATTA
11195598 AT
1 AT
11195600 AATCTTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTAAATAAATTAAATAAATATTA
Found at i:11195635 original size:23 final size:23
Alignment explanation
Indices: 11195599--11195659 Score: 81
Period size: 22 Copynumber: 2.7 Consensus size: 23
11195589 TAAATATTAA
*
11195599 TAATCTTATAATATATAAATAGTT
1 TAAT-TTATTATATATAAATAGTT
*
11195623 TTATTTATTATATAT-AATAGTT
1 TAATTTATTATATATAAATAGTT
11195645 TAATTT-TTATATATA
1 TAATTTATTATATATA
11195660 TTAATAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 8 0.24
22 12 0.36
23 10 0.30
24 3 0.09
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (23 bp):
TAATTTATTATATATAAATAGTT
Found at i:11195657 original size:19 final size:22
Alignment explanation
Indices: 11195604--11195659 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
11195594 ATTAATAATC
* *
11195604 TTATAATATATAAATAGTTTTAT
1 TTATTATATAT-AATAGTTTTAA
11195627 TTATTATATATAATAG-TTTAA
1 TTATTATATATAATAGTTTTAA
*
11195648 TTTTTATATATA
1 TTATTATATATA
11195660 TTAATAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 15 0.50
22 5 0.17
23 10 0.33
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (22 bp):
TTATTATATATAATAGTTTTAA
Found at i:11195660 original size:23 final size:23
Alignment explanation
Indices: 11195599--11195665 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 23
11195589 TAAATATTAA
11195599 TAATCTTATA-ATATATAAATAGTT
1 TAAT-TTATATATATAT-AATAGTT
*
11195623 TTATTTAT-TATATATAATAGTT
1 TAATTTATATATATATAATAGTT
*
11195645 TAATTTTTATATATATTAATA
1 TAATTTATATATATA-TAATA
11195666 ATTATATTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 13 0.35
23 16 0.43
24 8 0.22
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (23 bp):
TAATTTATATATATATAATAGTT
Found at i:11195724 original size:19 final size:19
Alignment explanation
Indices: 11195689--11195742 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
11195679 AATTATATTT
*
11195689 TATTATTAT-TAAGTAATAA
1 TATTATTATATTA-TAATAA
*
11195708 TATTATTATATTATAATTA
1 TATTATTATATTATAATAA
11195727 T-TTAATTATATTATAA
1 TATT-ATTATATTATAA
11195743 ATATTAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 2 0.06
19 27 0.87
20 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TATTATTATATTATAATAA
Found at i:11195732 original size:27 final size:27
Alignment explanation
Indices: 11195656--11195740 Score: 73
Period size: 27 Copynumber: 3.0 Consensus size: 27
11195646 AATTTTTATA
11195656 TATATTAATAATTATATTAATTTAAT-TATAT
1 TATATT-ATAATTAT-TTAA--TAATAT-TAT
* * **
11195687 TTTATTATTATTAAGTAATAATATTAT
1 TATATTATAATTATTTAATAATATTAT
*
11195714 TATATTATAATTATTTAATTATATTAT
1 TATATTATAATTATTTAATAATATTAT
11195741 AAATATTAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
27 29 0.66
28 1 0.02
29 3 0.07
30 6 0.14
31 5 0.11
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (27 bp):
TATATTATAATTATTTAATAATATTAT
Found at i:11196247 original size:27 final size:26
Alignment explanation
Indices: 11196198--11196249 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
11196188 ATCTCTAACA
* * *
11196198 ATAATATTTAATTATTAATTAGTATT
1 ATAATATTTAATAAATAAATAGTATT
11196224 ATAATTATTTAATAAATAAATAGTAT
1 ATAA-TATTTAATAAATAAATAGTAT
11196250 AATTAGTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (26 bp):
ATAATATTTAATAAATAAATAGTATT
Found at i:11196585 original size:20 final size:21
Alignment explanation
Indices: 11196548--11196671 Score: 71
Period size: 20 Copynumber: 5.8 Consensus size: 21
11196538 CATTGATTAT
*
11196548 TTATAATTTATTATTATAA-A
1 TTATAATTAATTATTATAATA
11196568 TTATAATTAA-TATATATAATA
1 TTATAATTAATTAT-TATAATA
* * *
11196589 TTAATATTTAATTGTT-TATTAA
1 TT-ATAATTAATTATTATAAT-A
11196611 TTATAATATAAATTAATTATAATACA
1 TTATAAT-T-AATT-ATTATAAT--A
* *
11196637 TGT-TAGTTAATTATTATTATA
1 T-TATAATTAATTATTATAATA
11196658 -TATAA-TAATTATTA
1 TTATAATTAATTATTA
11196672 ATATAATCAT
Statistics
Matches: 81, Mismatches: 11, Indels: 25
0.69 0.09 0.21
Matches are distributed among these distances:
19 13 0.16
20 16 0.20
21 11 0.14
22 12 0.15
23 13 0.16
24 6 0.07
25 4 0.05
26 5 0.06
27 1 0.01
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (21 bp):
TTATAATTAATTATTATAATA
Found at i:11196668 original size:16 final size:15
Alignment explanation
Indices: 11196644--11196678 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
11196634 ACATGTTAGT
*
11196644 TAATTATTATTATATA
1 TAATAATTATTA-ATA
11196660 TAATAATTATTAATA
1 TAATAATTATTAATA
11196675 TAAT
1 TAAT
11196679 CATAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TAATAATTATTAATA
Found at i:11197196 original size:28 final size:29
Alignment explanation
Indices: 11197165--11197222 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
11197155 ATATCAATAA
11197165 TTAAATA-ATAAAAATT-AAATATTTTAAT
1 TTAAATATATAAAAATTAAAAT-TTTTAAT
* *
11197193 TTAAATATTTAAAATTTAAAATTTTTAAT
1 TTAAATATATAAAAATTAAAATTTTTAAT
11197222 T
1 T
11197223 ATTAACATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 7 0.27
29 15 0.58
30 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TTAAATATATAAAAATTAAAATTTTTAAT
Found at i:11197203 original size:13 final size:14
Alignment explanation
Indices: 11197179--11197222 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
11197169 ATAATAAAAA
11197179 TTAAATATTTTAAT
1 TTAAATATTTTAAT
*
11197193 TTAAATATTTAAAAT
1 TTAAATATTT-TAAT
11197208 TTAAA-ATTTTTAAT
1 TTAAATA-TTTTAAT
11197222 T
1 T
11197223 ATTAACATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAAATATTTTAAT
Found at i:11197227 original size:23 final size:24
Alignment explanation
Indices: 11197192--11197236 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
11197182 AATATTTTAA
*
11197192 TTTAAATATTTAAAATTTAAAATT
1 TTTAAATATTTAAAATTCAAAATT
* *
11197216 TTTAATTA-TTAACATTCAAAA
1 TTTAAATATTTAAAATTCAAAA
11197237 AATTAATAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
TTTAAATATTTAAAATTCAAAATT
Found at i:11197469 original size:21 final size:22
Alignment explanation
Indices: 11197440--11197490 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
11197430 ATTATAATTT
*
11197440 ATTATTATAATAATA-TTAG-TA
1 ATTAATATAA-AATAGTTAGTTA
11197461 ATTAATATAAAATAGTTAGTTA
1 ATTAATATAAAATAGTTAGTTA
*
11197483 AATAATAT
1 ATTAATAT
11197491 TAACAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 4 0.15
21 13 0.50
22 9 0.35
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (22 bp):
ATTAATATAAAATAGTTAGTTA
Found at i:11197470 original size:18 final size:18
Alignment explanation
Indices: 11197443--11197492 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
11197433 ATAATTTATT
11197443 ATTATAATAATATTAG-TA
1 ATTA-AATAATATTAGTTA
*
11197461 ATTAATATAA-AATAGTTA
1 ATTAA-ATAATATTAGTTA
*
11197479 GTTAAATAATATTA
1 ATTAAATAATATTA
11197493 ACAATAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 9 0.35
18 17 0.65
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (18 bp):
ATTAAATAATATTAGTTA
Found at i:11197666 original size:22 final size:22
Alignment explanation
Indices: 11197634--11197676 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
11197624 TATAAACAAT
*
11197634 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
11197656 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
11197677 TAACTAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:11197837 original size:39 final size:37
Alignment explanation
Indices: 11197819--11197907 Score: 96
Period size: 39 Copynumber: 2.4 Consensus size: 37
11197809 TGTTATTAGT
11197819 AATAATAA-TAATAATATAATATTATTAATTTATTAA
1 AATAATAATTAATAATATAATATTATTAATTTATTAA
11197855 AATAATAATTAATAA-AT--TGATTATTAAAATATTCATTAA
1 AATAATAATTAATAATATAAT-ATTATT--AAT-TT-ATTAA
*
11197894 AATAATTATTAATA
1 AATAATAATTAATA
11197908 TTTATAATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
34 1 0.02
35 6 0.13
36 10 0.22
37 9 0.20
38 2 0.04
39 18 0.39
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (37 bp):
AATAATAATTAATAATATAATATTATTAATTTATTAA
Found at i:11197878 original size:27 final size:30
Alignment explanation
Indices: 11197825--11197885 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 30
11197815 TAGTAATAAT
*
11197825 AATAATAATATAATATTATTAATTTATTAA
1 AATAATAATATAATATAATTAATTTATTAA
*
11197855 AATAATAAT-TAATA-AATTGA-TTATTAA
1 AATAATAATATAATATAATTAATTTATTAA
11197882 AATA
1 AATA
11197886 TTCATTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 11 0.38
28 4 0.14
29 5 0.17
30 9 0.31
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (30 bp):
AATAATAATATAATATAATTAATTTATTAA
Found at i:11197892 original size:12 final size:12
Alignment explanation
Indices: 11197850--11197937 Score: 54
Period size: 12 Copynumber: 6.9 Consensus size: 12
11197840 TTATTAATTT
*
11197850 ATTAAAATAATA
1 ATTAAAATATTA
11197862 ATTAATAA-ATTGA
1 ATTAA-AATATT-A
*
11197875 TTATTAAAATATTC
1 --ATTAAAATATTA
11197889 ATTAAAATAATT-
1 ATTAAAAT-ATTA
* *
11197901 ATTAATATTTATA
1 ATTAAAATAT-TA
*
11197914 ATTTAAATATTA
1 ATTAAAATATTA
11197926 ATTATAAATATT
1 ATTA-AAATATT
11197938 GACCTTATTA
Statistics
Matches: 59, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
11 1 0.02
12 28 0.47
13 20 0.34
14 2 0.03
15 8 0.14
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (12 bp):
ATTAAAATATTA
Found at i:11197904 original size:27 final size:27
Alignment explanation
Indices: 11197848--11197904 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
11197838 TATTATTAAT
*
11197848 TTATTAAAATAATAATTAATAAATTGA
1 TTATTAAAATAATAATTAAAAAATTGA
* *
11197875 TTATTAAAATATTCATTAAAATAATT-A
1 TTATTAAAATAATAATTAAAA-AATTGA
11197902 TTA
1 TTA
11197905 ATATTTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (27 bp):
TTATTAAAATAATAATTAAAAAATTGA
Found at i:11198200 original size:5 final size:5
Alignment explanation
Indices: 11198165--11198246 Score: 53
Period size: 5 Copynumber: 15.8 Consensus size: 5
11198155 AATTATTAAC
* * *
11198165 ATATGT ATA-T ATATT -TATA ATATA ATAATT ATATT AATAATT -TATA
1 ATAT-T ATATT ATATT ATATT ATATT AT-ATT ATATT -AT-ATT ATATT
*
11198211 ATATT ATTAAT ATTATT ATATT ATATT ATATT ATAT
1 ATATT A-TATT A-TATT ATATT ATATT ATATT ATAT
11198247 ATTAATTTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
4 9 0.14
5 33 0.52
6 18 0.29
7 3 0.05
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (5 bp):
ATATT
Found at i:11198210 original size:22 final size:23
Alignment explanation
Indices: 11198185--11198250 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 23
11198175 ATATTTATAA
11198185 TATAATAATTATATTAATAAT-T
1 TATAATAATTATATTAATAATAT
*
11198207 TATAAT-A-T-TATTAATATTAT
1 TATAATAATTATATTAATAATAT
*
11198227 TATATTATATTATATT-AT-ATAT
1 TATAATA-ATTATATTAATAATAT
11198249 TA
1 TA
11198251 ATTTAGTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
19 9 0.25
20 7 0.19
21 1 0.03
22 12 0.33
23 3 0.08
24 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TATAATAATTATATTAATAATAT
Found at i:11198212 original size:55 final size:54
Alignment explanation
Indices: 11198141--11198306 Score: 146
Period size: 57 Copynumber: 3.0 Consensus size: 54
11198131 TTTAATCATT
*
11198141 TAATAATATTATATAATTATTAACATATGTATATATATTTATAATATAATAATTATAT
1 TAATAAT-TTATA-AATTATTAA-ATATGTATATATATTTATAATATAATAATT-TAG
* *
11198199 TAATAATTTATAATATTATTAATATTAT-TATATTATATTATATTATATATTAATTTAG
1 TAATAATTTATAA-ATTATTAA-A-TATGTATA-TATATT-TATAATATAATAATTTAG
*
11198257 T--TAATTTATAAATTATATTAAATATTGTA-ATATA-TT-TAATATATTAATTT
1 TAATAATTTATAAA-T-TATTAAATA-TGTATATATATTTATAATATAATAATTT
11198307 CATTAATCTT
Statistics
Matches: 95, Mismatches: 5, Indels: 22
0.78 0.04 0.18
Matches are distributed among these distances:
52 13 0.14
53 1 0.01
54 1 0.01
55 7 0.07
56 15 0.16
57 26 0.27
58 19 0.20
59 13 0.14
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (54 bp):
TAATAATTTATAAATTATTAAATATGTATATATATTTATAATATAATAATTTAG
Found at i:11198234 original size:38 final size:37
Alignment explanation
Indices: 11198191--11198277 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 37
11198181 ATAATATAAT
*
11198191 AATTATATTAATAATTTA-TAATATTA-TTAATATTATTA
1 AATTATATTAATAATATATTAAT-TTAGTTAAT-TTA-TA
* *
11198229 TATTATATTATATTATATATTAATTTAGTTAATTTATA
1 AATTATATTA-ATAATATATTAATTTAGTTAATTTATA
11198267 AATTATATTAA
1 AATTATATTAA
11198278 ATATTGTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
37 1 0.02
38 20 0.48
39 12 0.29
40 9 0.21
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (37 bp):
AATTATATTAATAATATATTAATTTAGTTAATTTATA
Found at i:11198277 original size:17 final size:17
Alignment explanation
Indices: 11198202--11198277 Score: 50
Period size: 19 Copynumber: 4.2 Consensus size: 17
11198192 ATTATATTAA
11198202 TAATTTAT-AA-TATTAT
1 TAATTTATAAATTA-TAT
*
11198218 TAATATTATTATATTATAT
1 TAAT-TTA-TAAATTATAT
11198237 TATATTATATATTAATT-TAGT
1 TA-ATT-TATA--AATTATA-T
11198258 TAATTTATAAATTATAT
1 TAATTTATAAATTATAT
11198275 TAA
1 TAA
11198278 ATATTGTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 19
0.70 0.03 0.28
Matches are distributed among these distances:
16 4 0.08
17 11 0.23
18 3 0.06
19 13 0.27
20 11 0.23
21 6 0.12
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (17 bp):
TAATTTATAAATTATAT
Found at i:11198304 original size:17 final size:17
Alignment explanation
Indices: 11198144--11198304 Score: 66
Period size: 17 Copynumber: 9.2 Consensus size: 17
11198134 AATCATTTAA
*
11198144 TAATATTATATAAT-TAT
1 TAATA-TATTTAATATAT
* *
11198161 TAACATATGTATATATAT
1 TAATATATTTA-ATATAT
* *
11198179 TTATAATATAATAATTATAT
1 TAAT-ATAT-TTAA-TATAT
11198199 TAATA-ATTT-ATAATAT
1 TAATATATTTAAT-ATAT
* *
11198215 TATTA-ATATTATTATAT
1 TAATATAT-TTAATATAT
11198232 T-ATATTATATT-ATATAT
1 TAATA-TAT-TTAATATAT
* * *
11198249 TAATTTAGTTAATTTAT
1 TAATATATTTAATATAT
* *
11198266 AAATTATATTAAATAT-T
1 TAA-TATATTTAATATAT
11198283 GTAATATATTTAATATAT
1 -TAATATATTTAATATAT
11198301 TAAT
1 TAAT
11198305 TTCATTAATC
Statistics
Matches: 108, Mismatches: 21, Indels: 30
0.68 0.13 0.19
Matches are distributed among these distances:
15 1 0.01
16 20 0.19
17 45 0.42
18 26 0.24
19 6 0.06
20 10 0.09
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (17 bp):
TAATATATTTAATATAT
Found at i:11198481 original size:13 final size:12
Alignment explanation
Indices: 11198463--11198505 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 12
11198453 ATTATCTATA
11198463 ATATATTACAATT
1 ATATATTA-AATT
11198476 ATATATTAAATT
1 ATATATTAAATT
11198488 ATATAATT-AA-T
1 ATAT-ATTAAATT
11198499 ATATATT
1 ATATATT
11198506 CTAAATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 3 0.10
11 5 0.17
12 10 0.34
13 11 0.38
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (12 bp):
ATATATTAAATT
Found at i:11200043 original size:22 final size:22
Alignment explanation
Indices: 11200015--11200058 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
11200005 ATAGAATTTA
11200015 ATTTATTATTATACTTA-ATAAT
1 ATTTATTA-TATACTTATATAAT
*
11200037 ATTTATTATATATTTATATAAT
1 ATTTATTATATACTTATATAAT
11200059 TATTAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTTATTATATACTTATATAAT
Found at i:11200586 original size:20 final size:20
Alignment explanation
Indices: 11200528--11200591 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
11200518 ATAATTATTT
*
11200528 TATAA-TTTAATAATT-TGAA
1 TATAATTTTATTAATTAT-AA
*
11200547 TAATAATATTATCTAA-TATAA
1 T-ATAATTTTAT-TAATTATAA
*
11200568 TATAATTTTATTAATTATAT
1 TATAATTTTATTAATTATAA
11200588 TATA
1 TATA
11200592 CTTAAATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
19 4 0.11
20 21 0.58
21 7 0.19
22 4 0.11
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
TATAATTTTATTAATTATAA
Found at i:11200637 original size:65 final size:62
Alignment explanation
Indices: 11200568--11200689 Score: 140
Period size: 62 Copynumber: 1.9 Consensus size: 62
11200558 TCTAATATAA
* * *
11200568 TATAATTTTATTAA-TTATATTATACTTAAATATTTTAATAATTAT-TATTATAAATAATAAATT
1 TATAA-TTTATAAATTTATA-TATA-TTAAATA-TAT-ATAATTATATATAATAAATAATAAATT
11200631 AT
61 AT
* *
11200633 TATAATTTATAAATTTATATATATTTAATATATATAATTATATATAATTAATAATAA
1 TATAATTTATAAATTTATATATATTAAATATATATAATTATATATAATAAATAATAA
11200690 TTCAAATATT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
61 8 0.16
62 15 0.30
63 6 0.12
64 11 0.22
65 10 0.20
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (62 bp):
TATAATTTATAAATTTATATATATTAAATATATATAATTATATATAATAAATAATAAATTAT
Found at i:11200653 original size:17 final size:18
Alignment explanation
Indices: 11200611--11200659 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
11200601 TTTAATAATT
* *
11200611 ATTATTATA-AATAATAA
1 ATTATTATATATTTATAA
11200628 ATTATTATA-ATTTATAA
1 ATTATTATATATTTATAA
11200645 ATT-TATATATATTTA
1 ATTAT-TATATATTTA
11200660 ATATATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 1 0.04
17 22 0.79
18 5 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTATTATATATTTATAA
Found at i:11200659 original size:18 final size:17
Alignment explanation
Indices: 11200611--11200647 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
11200601 TTTAATAATT
* *
11200611 ATTATTATAAATAATAA
1 ATTATTATAATTTATAA
11200628 ATTATTATAATTTATAA
1 ATTATTATAATTTATAA
11200645 ATT
1 ATT
11200648 TATATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATTATAATTTATAA
Found at i:11200741 original size:23 final size:21
Alignment explanation
Indices: 11200684--11200818 Score: 91
Period size: 23 Copynumber: 6.2 Consensus size: 21
11200674 ATATAATTAA
* *
11200684 TAATAATTCA-AA-TATTTAG
1 TAATAATTAATAATTATTTAT
*
11200703 TAAAAATATAATAATTATTGTAT
1 TAATAAT-TAATAATTATT-TAT
11200726 TAATAATGTAATAATTTATTT-T
1 TAATAAT-TAATAA-TTATTTAT
*
11200748 AAATAATTAAGTATATTATTTTAAT
1 TAATAATTAA-TA-ATTA-TTT-AT
* *
11200773 ATAATAATAAAT-ATTAATTAT
1 -TAATAATTAATAATTATTTAT
*
11200794 T-ATAATTAATAATAATTTAT
1 TAATAATTAATAATTATTTAT
11200814 TAATA
1 TAATA
11200819 GTAATTAATA
Statistics
Matches: 91, Mismatches: 12, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
19 14 0.15
20 11 0.12
21 10 0.11
22 18 0.20
23 23 0.25
24 5 0.05
25 2 0.02
26 8 0.09
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.47
Consensus pattern (21 bp):
TAATAATTAATAATTATTTAT
Found at i:11200778 original size:26 final size:27
Alignment explanation
Indices: 11200749--11200806 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
11200739 ATTTATTTTA
* *
11200749 AATAATTAAGTA-T-ATTATTTTAATAT
1 AATAATTAAATATTAATTATTATAAT-T
11200775 AATAA-TAAATATTAATTATTATAATT
1 AATAATTAAATATTAATTATTATAATT
11200801 AATAAT
1 AATAAT
11200807 AATTTATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 5 0.19
26 12 0.44
27 10 0.37
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (27 bp):
AATAATTAAATATTAATTATTATAATT
Found at i:11200792 original size:27 final size:27
Alignment explanation
Indices: 11200762--11200817 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
11200752 AATTAAGTAT
*
11200762 ATTATTTTAATATAATAATAA-ATATTA
1 ATTATTATAAT-TAATAATAATATATTA
*
11200789 ATTATTATAATTAATAATAATTTATTA
1 ATTATTATAATTAATAATAATATATTA
11200816 AT
1 AT
11200818 AGTAATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
ATTATTATAATTAATAATAATATATTA
Found at i:11200804 original size:19 final size:20
Alignment explanation
Indices: 11200776--11200815 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
11200766 TTTTAATATA
*
11200776 ATAATAAATATTAA-TTATT
1 ATAATAAATAATAATTTATT
*
11200795 ATAATTAATAATAATTTATT
1 ATAATAAATAATAATTTATT
11200815 A
1 A
11200816 ATAGTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAATAAATAATAATTTATT
Found at i:11200863 original size:20 final size:20
Alignment explanation
Indices: 11200838--11200877 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
11200828 ATATATGTCC
11200838 AATATTAAAATTAATATATT
1 AATATTAAAATTAATATATT
*
11200858 AATATTAATATTAATATATT
1 AATATTAAAATTAATATATT
11200878 GTACTATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AATATTAAAATTAATATATT
Found at i:11200868 original size:12 final size:13
Alignment explanation
Indices: 11200770--11200874 Score: 54
Period size: 14 Copynumber: 7.8 Consensus size: 13
11200760 ATATTATTTT
*
11200770 AATA-TAATAATA
1 AATATTAATATTA
11200782 AATATTAATTATTA
1 AATATTAA-TATTA
* *
11200796 TA-ATTAATAATA
1 AATATTAATATTA
* *
11200808 ATTTATTAATAGTA
1 A-ATATTAATATTA
* * *
11200822 ATTAATATATATGTCC
1 AATATTA-ATAT-T-A
*
11200838 AATATTAAAATTA
1 AATATTAATATTA
11200851 ATATATTAATATT-
1 A-ATATTAATATTA
11200864 AATATTAATAT
1 AATATTAATAT
11200875 ATTGTACTAT
Statistics
Matches: 71, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
12 18 0.25
13 15 0.21
14 29 0.41
15 4 0.06
16 5 0.07
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (13 bp):
AATATTAATATTA
Found at i:11201001 original size:30 final size:33
Alignment explanation
Indices: 11200961--11201036 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
11200951 ATATTTAATG
*
11200961 TTATATTAAATAAAATT-AAT-ATAATA-ATTA
1 TTATAATAAATAAAATTAAATAATAATATATTA
* * *
11200991 TTATAATAAATAATATTAAATAATATTATATTG
1 TTATAATAAATAAAATTAAATAATAATATATTA
11201024 TTATAATAAATAA
1 TTATAATAAATAA
11201037 TAACAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
30 15 0.38
31 3 0.08
32 5 0.13
33 16 0.41
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (33 bp):
TTATAATAAATAAAATTAAATAATAATATATTA
Found at i:11201012 original size:10 final size:10
Alignment explanation
Indices: 11200963--11201018 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
11200953 ATTTAATGTT
11200963 ATATTAAATA
1 ATATTAAATA
*
11200973 AAATTAATATA
1 ATATTAA-ATA
*
11200984 ATAATT--ATT
1 AT-ATTAAATA
*
11200993 ATAATAAATA
1 ATATTAAATA
11201003 ATATTAAATA
1 ATATTAAATA
11201013 ATATTA
1 ATATTA
11201019 TATTGTTATA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
8 2 0.06
9 4 0.11
10 23 0.64
11 4 0.11
12 3 0.08
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATTAAATA
Found at i:11201033 original size:33 final size:31
Alignment explanation
Indices: 11200951--11201038 Score: 99
Period size: 30 Copynumber: 2.8 Consensus size: 31
11200941 ATAAGATATG
* * *
11200951 ATATT-TAATGTTATATTAAATAAAATTAAT
1 ATATTATATTGTTATAATAAATAATATTAAT
* *
11200981 ATAATA-ATTATTATAATAAATAATATTAAAT
1 ATATTATATTGTTATAATAAATAATATT-AAT
11201012 AATATTATATTGTTATAATAAATAATA
1 -ATATTATATTGTTATAATAAATAATA
11201039 ACAATAAATA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
30 21 0.45
31 3 0.06
32 5 0.11
33 18 0.38
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (31 bp):
ATATTATATTGTTATAATAAATAATATTAAT
Found at i:11201049 original size:33 final size:32
Alignment explanation
Indices: 11200969--11201064 Score: 104
Period size: 33 Copynumber: 2.9 Consensus size: 32
11200959 TGTTATATTA
11200969 AATAAAATTAATATAATAATTATTATAATAAAT
1 AATAAAA-TAATATAATAATTATTATAATAAAT
* *
11201002 AATATTAAATAATATTAT-ATTGTTATAATAAAT
1 AATA--AAATAATATAATAATTATTATAATAAAT
* *
11201035 AATAACAATAAATATAATTATAATTATAAT
1 AATAA-AAT-AATATAATAATTATTATAAT
11201065 TGTTTTCATA
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
31 1 0.02
32 3 0.06
33 29 0.55
34 17 0.32
35 3 0.06
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (32 bp):
AATAAAATAATATAATAATTATTATAATAAAT
Found at i:11203698 original size:16 final size:16
Alignment explanation
Indices: 11203661--11203708 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
11203651 ATATTTAGTA
11203661 ATATTATTAATTATAT
1 ATATTATTAATTATAT
*
11203677 AAATTATTAA-TACTAT
1 ATATTATTAATTA-TAT
*
11203693 ATATTAATTAAATATA
1 ATATT-ATTAATTATA
11203709 ATACTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 2 0.07
16 16 0.59
17 7 0.26
18 2 0.07
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTATTAATTATAT
Found at i:11203701 original size:20 final size:22
Alignment explanation
Indices: 11203672--11203720 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
11203662 TATTATTAAT
11203672 TATATAAATT-AT-TAATACTA
1 TATATAAATTAATATAATACTA
*
11203692 TATATTAATTAAATATAATACTA
1 TATATAAATT-AATATAATACTA
11203715 TA-ATAA
1 TATATAA
11203721 TCTGGTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 9 0.38
22 5 0.21
23 10 0.42
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (22 bp):
TATATAAATTAATATAATACTA
Found at i:11203808 original size:14 final size:15
Alignment explanation
Indices: 11203789--11203884 Score: 54
Period size: 14 Copynumber: 6.1 Consensus size: 15
11203779 CAAATAAATT
11203789 TTAA-AATATTATAA
1 TTAATAATATTATAA
*
11203803 TTAA-AATAATTAAAATA
1 TTAATAAT-ATT-ATA-A
*
11203820 TTAATAATACTAT-A
1 TTAATAATATTATAA
11203834 TTAATAATATTATTATA
1 TTAATAATATTA-TA-A
*
11203851 TTATTAACTATTTATAAA
1 TTAATAA-TA-TTAT-AA
* *
11203869 TTATTACTATTATAA
1 TTAATAATATTATAA
11203884 T
1 T
11203885 AGTTTATTGT
Statistics
Matches: 66, Mismatches: 6, Indels: 19
0.73 0.07 0.21
Matches are distributed among these distances:
14 19 0.29
15 7 0.11
16 7 0.11
17 16 0.24
18 13 0.20
19 4 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAATAATATTATAA
Found at i:11203871 original size:18 final size:16
Alignment explanation
Indices: 11203850--11203883 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
11203840 ATATTATTAT
11203850 ATTATTAACTATTTATAA
1 ATTATT-ACTA-TTATAA
11203868 ATTATTACTATTATAA
1 ATTATTACTATTATAA
11203884 TAGTTTATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 4 0.25
18 6 0.38
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTATTACTATTATAA
Found at i:11203992 original size:15 final size:14
Alignment explanation
Indices: 11203969--11204026 Score: 55
Period size: 15 Copynumber: 4.0 Consensus size: 14
11203959 AAATATAAAT
11203969 TAAATATTTTAATA
1 TAAATATTTTAATA
11203983 TAAATAATTTTAAT-
1 TAAAT-ATTTTAATA
* *
11203997 TAATTATTATAATA
1 TAAATATTTTAATA
*
11204011 TTAAGATATTTAAATA
1 -TAA-ATATTTTAATA
11204027 GTTCAACTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 7 0.20
14 9 0.26
15 11 0.31
16 8 0.23
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
TAAATATTTTAATA
Found at i:11204895 original size:11 final size:11
Alignment explanation
Indices: 11204879--11204919 Score: 82
Period size: 11 Copynumber: 3.7 Consensus size: 11
11204869 CAATTTACAC
11204879 AATTATATCGT
1 AATTATATCGT
11204890 AATTATATCGT
1 AATTATATCGT
11204901 AATTATATCGT
1 AATTATATCGT
11204912 AATTATAT
1 AATTATAT
11204920 TAAATACCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (11 bp):
AATTATATCGT
Found at i:11206014 original size:17 final size:18
Alignment explanation
Indices: 11205974--11206026 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 18
11205964 ACTAAATCAG
11205974 TTCAAATAATTA-TAACT
1 TTCAAATAATTATTAACT
* *
11205991 TTTAAATAATTATTTA-T
1 TTCAAATAATTATTAACT
*
11206008 TTCAAATCATTATT-ACT
1 TTCAAATAATTATTAACT
11206025 TT
1 TT
11206027 TTGTTTTGTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
16 1 0.03
17 27 0.90
18 2 0.07
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (18 bp):
TTCAAATAATTATTAACT
Found at i:11207764 original size:180 final size:180
Alignment explanation
Indices: 11207364--11207792 Score: 434
Period size: 180 Copynumber: 2.4 Consensus size: 180
11207354 CATTTCAAAT
* * * * * ** * *
11207364 TTTTATTTTGTCATTAAACAATTGGTTCTGTTCATGCTATTTTATTTAGACTAAAATAATATTAA
1 TTTTCTTTAGTCATAAAACAATT-GTTCTGTTCATACAAGCTTATTTAGAATAAAATAATAATAA
* * *
11207429 TTTAATAATATTCTGAAACTTAATAACCAAGAAAATTAAAAAATAAATATAATTGTTGAACCAGT
65 TTTAATAATATTCTAAAAATTAATAACCAAGAAAATTAAAAAATAAATATAATTGTTAAACCAGT
* * ** *
11207494 TAAAATAGTTATGATGATATGAATGATTATCTATTTTAAATCATTATGACC
130 TAAAATAGTTAAGATGATATAAACAATTATCTATTTAAAATCATTATGACC
* * * * * * *
11207545 TTTTCTTTTGTCGTAAAACAATTGTTTTGTTCGTACAAGCTTATTTTGATTAAAATAATACTAAT
1 TTTTCTTTAGTCATAAAACAATTGTTCTGTTCATACAAGCTTATTTAGAATAAAATAATAATAAT
* ** * ** *
11207610 TTAATAATATTTTAAAAATTAATAAGTAAGAAATTTAAAAAATAAAT-TTGTT-TATAAATCAGT
66 TTAATAATATTCTAAAAATTAATAACCAAGAAAATTAAAAAATAAATATAATTGT-TAAACCAGT
* * * *
11207673 TCAAATGGTTAAGACT-AT-TAAAACAATTATCTATTTAAAATCGTTTTGACC
130 TAAAATAGTTAAGA-TGATAT-AAACAATTATCTATTTAAAATCATTATGACC
* * * *
11207724 TTTTGTTTAGTTATAAAACAATTGTTCTAGTTCATACAAGCTTATTCAGAATAAATTAATAATAA
1 TTTTCTTTAGTCATAAAACAATTGTTCT-GTTCATACAAGCTTATTTAGAATAAAATAATAATAA
11207789 TTTA
65 TTTA
11207793 TTAGAATTCA
Statistics
Matches: 202, Mismatches: 42, Indels: 9
0.80 0.17 0.04
Matches are distributed among these distances:
178 2 0.01
179 71 0.35
180 109 0.54
181 20 0.10
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.42
Consensus pattern (180 bp):
TTTTCTTTAGTCATAAAACAATTGTTCTGTTCATACAAGCTTATTTAGAATAAAATAATAATAAT
TTAATAATATTCTAAAAATTAATAACCAAGAAAATTAAAAAATAAATATAATTGTTAAACCAGTT
AAAATAGTTAAGATGATATAAACAATTATCTATTTAAAATCATTATGACC
Found at i:11208308 original size:181 final size:180
Alignment explanation
Indices: 11207836--11208429 Score: 485
Period size: 179 Copynumber: 3.3 Consensus size: 180
11207826 TTTGTTTACT
* * ** * *
11207836 ATTTGAACAATTTTCTATTT-AGAATCATTATA-ACCTTTTAATTTGTCATAAAACAATTATTTA
1 ATTTGAACAATTATCAATTTCA-AATCATTA-AGACCTTTTGTTTTGTCATAAAATAATTATTTT
* * * * *** * *
11207899 AGTTAATACAAGCTTAGAGGGAAAAAATAATACTAATTTATTAATATTTCCTAAAA-TAATAAGT
64 TGATCATACAAACTTATTCGAAAAAAATAATACTAATTTATTAATATTT-CAAAAATTAAT-AGT
* * * * * *
11207963 AAGAAATTT--AAAAATAAATTTGTTTACCAAATCAATTAAAATAATTATGGCC
127 AAGAGATTTAAAAAAATAAATTTGTTTATCAAACCAATTCAAATAGTTATGACC
** *** * * * * *
11208015 ATTTGAATGATTATTTGTTTCAAATCGTTATGACCTTTTGTTTTGTTATAAAATATTTGTTTTTG
1 ATTTGAACAATTATCAATTTCAAATCATTAAGACCTTTTGTTTTGTCATAAAATAATTATTTTTG
* * *
11208080 ATCATACAAGCTTATTCGAAATAAAATATTAC-AATTTTTTAATATTTCAAAAATTAATGAGTAA
66 ATCATACAAACTTATTCGAAA-AAAATAATACTAATTTATTAATATTTCAAAAATTAAT-AGTAA
* * * *
11208144 GAGATTTAAAAAAATAAATATGTTTATCGAACCAGTTCAAATAGTTATGACT
129 GAGATTTAAAAAAATAAATTTGTTTATCAAACCAATTCAAATAGTTATGACC
*
11208196 ATTTGAACAATTATCAATCTT-AAATCATTAAGA-TTTTTGTTTTGTCATAAAATAATTATTTCT
1 ATTTGAACAATTATCAAT-TTCAAATCATTAAGACCTTTTGTTTTGTCATAAAATAATTATTT-T
* ** * *
11208259 T-ATCATAGAAACTTATTCAGTTAAAAATAATACTAATTTAATAATATTTCAAAATTTAATA--A
64 TGATCATACAAACTTATTC-GAAAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAGTA
* * ** *
11208321 A-AGATTTAAAAAAATAAATTTTTTTGTCAAACCAATTCAAATAGTTAAAACA
128 AGAGATTTAAAAAAATAAATTTGTTTATCAAACCAATTCAAATAGTTATGACC
* * ** * * * * *
11208373 ATTAGAATAATTATTTATTTCAAATCGTTCCA-ATCTTATGTTTAGTCATAAAATAAT
1 ATTTGAACAATTATCAATTTCAAATCATT-AAGACCTTTTGTTTTGTCATAAAATAAT
11208430 CCAAATTTAT
Statistics
Matches: 331, Mismatches: 71, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
176 2 0.01
177 65 0.20
178 28 0.08
179 91 0.27
180 59 0.18
181 84 0.25
182 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (180 bp):
ATTTGAACAATTATCAATTTCAAATCATTAAGACCTTTTGTTTTGTCATAAAATAATTATTTTTG
ATCATACAAACTTATTCGAAAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAGTAAGA
GATTTAAAAAAATAAATTTGTTTATCAAACCAATTCAAATAGTTATGACC
Found at i:11208363 original size:177 final size:177
Alignment explanation
Indices: 11207836--11208429 Score: 461
Period size: 181 Copynumber: 3.3 Consensus size: 177
11207826 TTTGTTTACT
* * ** * *
11207836 ATTTGAACAATTTTCTATTT-AGAATCATTATA-ACCTTTTAATTTGTCATAAAACAATTATTTA
1 ATTTGAACAATTATCAATTTCA-AATCATTA-AGACCTTTTGTTTTGTCATAAAATAATTATTTT
* * * * *** * *
11207899 AGTTAATACAAGCTTAGAGGGAAAAAATAATACTAATTTATTAATATTTCCTAAAATAATAAGTA
64 TGATCATACAAACTTATTCGAAAAAAATAATACTAATTTATTAATATTT-C-AAAAT-TTAA-TA
* * * * *
11207964 AGAA-ATTT--AAAAATAAATTTGTTTACCAAATCAATTAAAATAATTATGGCC
125 A-AAGATTTAAAAAAATAAATTTGTTTATCAAACCAATTCAAATAGTTATGACC
** *** * * * * *
11208015 ATTTGAATGATTATTTGTTTCAAATCGTTATGACCTTTTGTTTTGTTATAAAATATTTGTTTTTG
1 ATTTGAACAATTATCAATTTCAAATCATTAAGACCTTTTGTTTTGTCATAAAATAATTATTTTTG
* * * *
11208080 ATCATACAAGCTTATTCGAAATAAAATATTAC-AATTTTTTAATATTTCAAAAATTAATGAGTAA
66 ATCATACAAACTTATTCGAAA-AAAATAATACTAATTTATTAATATTTCAAAATTTAAT-A--AA
* * * *
11208144 GAGATTTAAAAAAATAAATATGTTTATCGAACCAGTTCAAATAGTTATGACT
127 -AGATTTAAAAAAATAAATTTGTTTATCAAACCAATTCAAATAGTTATGACC
*
11208196 ATTTGAACAATTATCAATCTT-AAATCATTAAGA-TTTTTGTTTTGTCATAAAATAATTATTTCT
1 ATTTGAACAATTATCAAT-TTCAAATCATTAAGACCTTTTGTTTTGTCATAAAATAATTATTT-T
* ** *
11208259 T-ATCATAGAAACTTATTCAGTTAAAAATAATACTAATTTAATAATATTTCAAAATTTAATAAAA
64 TGATCATACAAACTTATTC-GAAAAAAATAATACTAATTTATTAATATTTCAAAATTTAATAAAA
* * ** *
11208323 GATTTAAAAAAATAAATTTTTTTGTCAAACCAATTCAAATAGTTAAAACA
128 GATTTAAAAAAATAAATTTGTTTATCAAACCAATTCAAATAGTTATGACC
* * ** * * * * *
11208373 ATTAGAATAATTATTTATTTCAAATCGTTCCA-ATCTTATGTTTAGTCATAAAATAAT
1 ATTTGAACAATTATCAATTTCAAATCATT-AAGACCTTTTGTTTTGTCATAAAATAAT
11208430 CCAAATTTAT
Statistics
Matches: 328, Mismatches: 70, Indels: 35
0.76 0.16 0.08
Matches are distributed among these distances:
175 1 0.00
176 6 0.02
177 70 0.21
178 26 0.08
179 80 0.24
180 59 0.18
181 84 0.26
182 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (177 bp):
ATTTGAACAATTATCAATTTCAAATCATTAAGACCTTTTGTTTTGTCATAAAATAATTATTTTTG
ATCATACAAACTTATTCGAAAAAAATAATACTAATTTATTAATATTTCAAAATTTAATAAAAGAT
TTAAAAAAATAAATTTGTTTATCAAACCAATTCAAATAGTTATGACC
Found at i:11208749 original size:321 final size:320
Alignment explanation
Indices: 11208128--11208750 Score: 722
Period size: 321 Copynumber: 1.9 Consensus size: 320
11208118 TTAATATTTC
* * * * *
11208128 AAAAATTAATGAGTAAGAGATTTAAAAAAATAAATATGTTTATCGAACCAGTTCAAATAGTTATG
1 AAAAATTAATAAGCAAAAGATTTAAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATG
* * *
11208193 ACTATTTGAACAATTATCAATCTTAAATCATTAAGATTTTTGTTTTGTCATAAAATAATTATTTC
66 ACTATTTGAACAATCATCAATCTTAAATCATTAAGAATTTTGTTTTGACATAAAATAATTATTTC
* * ** * *
11208258 TTATCATAGAAACTTATTCAGTTAAAAATAATACTAATTTAATAATATTTCAAAATTTAATAAAA
131 TTATCATAAAAACTTATCCAAATAAAAACAATACTAATTTAATAATATTTCAAAAATTAATAAAA
** * * *
11208323 GATTTAAAAAAATAAATTTTTTTGTCAAACCAATTCAAATAGTTAAAACAATTAGAATAATTATT
196 GATTTAAAAAAAT-AATTTTTTACTCAAACAAATTCAAATAGTTAAAACAATTAGAACAATTATC
* ** * * *
11208388 TATTTCAAATCGTTCCAATCTTATGTTTAGTCATAAAATAATCCAAATTTATTAACATTCA
260 CATTGAAAATCATTACAATCTTATGTTTAGTCACAAAATAATCCAAATTTATTAACATTCA
* * * *
11208449 AAAAATTAATAAGCAAAAGATTTGAAAAAATAAATTTGTTTATTGAACAAATTTAAATAGTTATG
1 AAAAATTAATAAGCAAAAGATTTAAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATG
* *
11208514 ACTATTTGAACAATCA-CATAT-TTAAAATCATTATGACATTTTGTTTTGACATAAAATAATT-G
66 ACTATTTGAACAATCATCA-ATCTT-AAATCATTAAGA-ATTTTGTTTTGACATAAAATAATTAT
**
11208576 TT-TTAGTTCATAAAAACTTATCCAAA-ATAAAACAATACTAATTTTTTAATATTTCAAAAATTA
128 TTCTTA--TCATAAAAACTTATCCAAATA-AAAACAATACTAATTTAATAATATTTCAAAAATTA
* * *
11208639 ATAAACAAGAGTTTAAAAAAAT-A-TTTTTACT-AAACAAATTCAAATAGTTATAACTATTTGAA
190 AT-AA-AAGA-TTTAAAAAAATAATTTTTTACTCAAACAAATTCAAATAGTTAAAACAATTAGAA
* ** * * *
11208701 CAATTGTCCATTGAAAATCATTATGATCTTTTGTTTTGTTACAAAATAAT
252 CAATTATCCATTGAAAATCATTACAATCTTATGTTTAGTCACAAAATAAT
11208751 GGTTTTAGTT
Statistics
Matches: 251, Mismatches: 42, Indels: 18
0.81 0.14 0.06
Matches are distributed among these distances:
320 7 0.03
321 150 0.60
322 76 0.30
323 3 0.01
324 4 0.02
325 11 0.04
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.38
Consensus pattern (320 bp):
AAAAATTAATAAGCAAAAGATTTAAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATG
ACTATTTGAACAATCATCAATCTTAAATCATTAAGAATTTTGTTTTGACATAAAATAATTATTTC
TTATCATAAAAACTTATCCAAATAAAAACAATACTAATTTAATAATATTTCAAAAATTAATAAAA
GATTTAAAAAAATAATTTTTTACTCAAACAAATTCAAATAGTTAAAACAATTAGAACAATTATCC
ATTGAAAATCATTACAATCTTATGTTTAGTCACAAAATAATCCAAATTTATTAACATTCA
Found at i:11208949 original size:181 final size:182
Alignment explanation
Indices: 11208420--11209373 Score: 543
Period size: 181 Copynumber: 5.3 Consensus size: 182
11208410 ATGTTTAGTC
* * * * * * *
11208420 ATAAAATAATCCAAATTTATTAACA-TTCAAAAAATTAATAA-GCAAAAGATTTGAAAAAATAAA
1 ATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAATGTAAGAGATTT-ACAAAACAAA
* *** * * * * * * * * *
11208483 TTTGTTTATTGAA-CAAATTTAAATAGTTATGACTATTTGAACAATCACATATTTAAAATCATTA
64 TCTGTTTACCAAATC-AGTTCAAATAATTATGACCATTTCAACAATTATATACTTCAAATCATTA
* * * * * * ** *
11208547 TGACATTTTGTTTTGACATAAAATAA-T-TGTTTTAGTTCATAAAAACTTATCCAAA
128 TAACATTTTGTTTGGTCATAAAACAATTATTTTTTA-TT-ATACAAGTTTATTCAAA
* * **
11208602 ATAAAACAATACTAATTTTTTAATATTTCAAAAATTAATAA-ACAAGAG-TTTA-AAAA-AATAT
1 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATGTAAGAGATTTACAAAACAA-AT
* * * * * * * ** *
11208663 -T-TTTACTAAA-CAAATTCAAATAGTTATAACTATTTGAACAATTGTCCA-TTGAAAATCATTA
65 CTGTTTACCAAATC-AGTTCAAATAATTATGACCATTTCAACAATTATATACTT-CAAATCATTA
* * * * *
11208724 TGATC-TTTTGTTTTGT--TACAA-AATAATGGTTTTAGTTCATACAAGTTTATTCAAA
128 T-AACATTTTGTTTGGTCATAAAACAATTAT-TTTTTA-TT-ATACAAGTTTATTCAAA
* * ** **
11208779 ACAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAT-TAAGTTATTTA-AAAAGTGAAT
1 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATGTAAGAGATTTACAAAA-CAAAT
* * * * *
11208842 CTGTTTACCATATCAGTTCAAATAATTATGGCCATTTCAATAATTATCTACTTCAAATCATTATT
65 CTGTTTACCAAATCAGTTCAAATAATTATGACCATTTCAACAATTATATACTTCAAATCATTATA
* *
11208907 ACATTTTGTTTGGTCATATAACAATTGTTTTTTATTATACAAGTTTATTCAAA
130 ACATTTTGTTTGGTCATAAAACAATTATTTTTTATTATACAAGTTTATTCAAA
*
11208960 ATAAAATAATACTAATTTATTAATCTTTCAAAAATTAAT-ATGTAAGAGATTTACAAAACAAATC
1 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATGTAAGAGATTTACAAAACAAATC
* * * * * *
11209024 TGTTTACCAAATTAGTTTAAATAGTTATGACTATTTGAACAATTGTATACTTCAAATCATTATAA
66 TGTTTACCAAATCAGTTCAAATAATTATGACCATTTCAACAATTATATACTTCAAATCATTATAA
* * * * * * * *
11209089 CCTTTTGTTTTGTCATAAAACAATTATTTCTGT-TCATATAGGCTTATTCGAA
131 CATTTTGTTTGGTCATAAAACAATTATTT-TTTATTATACAAGTTTATTCAAA
* * * * ** * * *
11209141 ATAAATTAATGCTAATATAATAATATTTCAAAAATTAATAA-CAAAGAGATTTAAAAAATAAATT
1 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATGTAAGAGATTTACAAAACAAATC
* * * * * * * * * * * **
11209205 TATCTACCAAA-CTAGTTCAAATAGTTAAGACTATATGAATAATTATCTATTTTAAATTGTT-T-
66 TGTTTACCAAATC-AGTTCAAATAATTATGACCATTTCAACAATTATATACTTCAAATCATTATA
* * * ** * *
11209267 -TA-TTT-TTT-GCCATAAAACAA-AATTTTCAATTCATACTAGCTTATT-AAGA
130 ACATTTTGTTTGGTCATAAAACAATTATTTTTTATT-ATACAAGTTTATTCAA-A
* * *
11209316 ATAAAATAA-AATGAATTTATTAATATTTCATAAATTAAT-ATGTAAGAGATTTAAAAAA
1 ATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAATGTAAGAGATTTACAAAA
11209374 TAATTTTATT
Statistics
Matches: 621, Mismatches: 122, Indels: 65
0.77 0.15 0.08
Matches are distributed among these distances:
173 1 0.00
174 10 0.02
175 72 0.12
176 6 0.01
177 125 0.20
178 12 0.02
179 8 0.01
180 7 0.01
181 315 0.51
182 49 0.08
183 12 0.02
184 4 0.01
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (182 bp):
ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATGTAAGAGATTTACAAAACAAATC
TGTTTACCAAATCAGTTCAAATAATTATGACCATTTCAACAATTATATACTTCAAATCATTATAA
CATTTTGTTTGGTCATAAAACAATTATTTTTTATTATACAAGTTTATTCAAA
Found at i:11209224 original size:362 final size:359
Alignment explanation
Indices: 11208538--11209381 Score: 840
Period size: 362 Copynumber: 2.4 Consensus size: 359
11208528 CACATATTTA
* * * * *
11208538 AAATCATTATGACATTTTGTTTTGACATAAAATAATTG--TTTTAGTTCATAAAAACTTATCCAA
1 AAATCATTATTACATTTTG-TTTGACATAAAACAATTGTTTTTTA-TTCATACAAGCTTATTCAA
* * ***
11208601 AATAAAACAATACTAATTTTTTAATATTTCAAAAATTAATAAACAAGAG-TTTAAAAAAATATTT
64 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATATGTAAGAGATTTAAAAAAATATTT
* * * *
11208665 TTACTAAACAAATTCAAATAGTTATAACTATTTGAACAATTGTCCATTGAAAATCATTATGATCT
129 TTACCAAACAAATTCAAATAGTTATAACTATTTGAACAATTGTACATTGAAAATCATTATAACCT
* * * *
11208730 TTTGTTTTGTTACAAAATAATGGTTTTAGTTCATACAAGTTTATTCAAAACAAAATAATACTAAT
194 TTTGTTTTGTCACAAAACAATGATTTTAGTTCATACAAGCTTATTCAAAACAAAATAATACTAAT
* * ** ** * * * * *
11208795 TTATTAATATTCCAAAAATTAATAATTAAGTTATTTAAAAAGTGAATCTGTTTACCATATCAGTT
259 ATAATAATATTCCAAAAATTAATAACAAAGAGATTTAAAAAATAAATCTATCTACCAAATCAGTT
* * *
11208860 CAAATAATTATGGCCATTTCAATAATTATCTACTTC
324 CAAATAATTAAGACCATATCAATAATTATCTACTTC
* * *
11208896 AAATCATTATTACATTTTGTTTGGTCATATAACAATTGTTTTTTATT-ATACAAGTTTATTCAAA
1 AAATCATTATTACATTTTGTTT-GACATAAAACAATTGTTTTTTATTCATACAAGCTTATTCAAA
*
11208960 ATAAAATAATACTAATTTATTAATCTTTCAAAAATTAATATGTAAGAGATTTACAAAACAA-ATC
65 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATATGTAAGAGATTTA-AAAA-AATAT-
** * * * * *
11209024 TGTTTACCAAATTAGTTTAAATAGTTATGACTATTTGAACAATTGTATACTT-CAAATCATTATA
127 T-TTTACCAAACAAATTCAAATAGTTATAACTATTTGAACAATTGTACA-TTGAAAATCATTATA
* * * * * * * *
11209088 ACCTTTTGTTTTGTCATAAAACAATTATTTCT-GTTCATATAGGCTTATTCGAAATAAATTAATG
190 ACCTTTTGTTTTGTCACAAAACAATGATTT-TAGTTCATACAAGCTTATTCAAAACAAAATAATA
* *
11209152 CTAATATAATAATATTTCAAAAATTAATAACAAAGAGATTTAAAAAATAAATTTATCTACCAAA-
254 CTAATATAATAATATTCCAAAAATTAATAACAAAGAGATTTAAAAAATAAATCTATCTACCAAAT
* * * * *
11209216 CTAGTTCAAATAGTTAAGACTATATGAATAATTATCTATTTT
319 C-AGTTCAAATAATTAAGACCATATCAATAATTATCTACTTC
** * ** ** *
11209258 AAATTGTT-TT--A-TTT-TTTGCCATAAAACAA-AATTTTCAATTCATACTAGCTTATT-AAGA
1 AAATCATTATTACATTTTGTTTGACATAAAACAATTGTTTTTTATTCATACAAGCTTATTCAA-A
* * *
11209316 ATAAAATAA-AATGAATTTATTAATATTTCATAAATTAATATGTAAGAGATTT-AAAAAATAATT
65 ATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATATGTAAGAGATTTAAAAAAATATTT
11209379 TTA
129 TTA
11209382 TTTACCTAAC
Statistics
Matches: 399, Mismatches: 72, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
352 4 0.01
353 3 0.01
354 5 0.01
355 11 0.03
356 68 0.17
357 6 0.02
358 88 0.22
359 7 0.02
360 11 0.03
361 6 0.02
362 187 0.47
363 3 0.01
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (359 bp):
AAATCATTATTACATTTTGTTTGACATAAAACAATTGTTTTTTATTCATACAAGCTTATTCAAAA
TAAAATAATACTAATTTATTAATATTTCAAAAATTAATATGTAAGAGATTTAAAAAAATATTTTT
ACCAAACAAATTCAAATAGTTATAACTATTTGAACAATTGTACATTGAAAATCATTATAACCTTT
TGTTTTGTCACAAAACAATGATTTTAGTTCATACAAGCTTATTCAAAACAAAATAATACTAATAT
AATAATATTCCAAAAATTAATAACAAAGAGATTTAAAAAATAAATCTATCTACCAAATCAGTTCA
AATAATTAAGACCATATCAATAATTATCTACTTC
Found at i:11210043 original size:33 final size:32
Alignment explanation
Indices: 11210004--11210077 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 32
11209994 TTATAGTGTA
11210004 TAATAATATACT-TAATTATAATTAAATAACTAT
1 TAATAATAT-CTATAATTATAATTAAA-AACTAT
* * *
11210037 TAATAATATTTATAATTATATTTATAAACTAT
1 TAATAATATCTATAATTATAATTAAAAACTAT
*
11210069 TAATTATAT
1 TAATAATAT
11210078 TATCAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 15 0.42
33 21 0.58
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (32 bp):
TAATAATATCTATAATTATAATTAAAAACTAT
Found at i:11210072 original size:32 final size:33
Alignment explanation
Indices: 11210016--11210078 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
11210006 ATAATATACT
11210016 TAATTATAATTAAATAACTATTAATAATATTTA
1 TAATTATAATTAAATAACTATTAATAATATTTA
* * *
11210049 TAATTATATTTATA-AACTATTAATTATATT
1 TAATTATAATTAAATAACTATTAATAATATT
11210079 ATCAATAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (33 bp):
TAATTATAATTAAATAACTATTAATAATATTTA
Found at i:11210119 original size:15 final size:15
Alignment explanation
Indices: 11210099--11210152 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
11210089 ATTTACCAAT
11210099 TTAATATATTTAATA
1 TTAATATATTTAATA
*
11210114 TTAATATAATTAATA
1 TTAATATATTTAATA
*
11210129 TT-ATATTTTTTAATA
1 TTAATA-TATTTAATA
11210144 -TAATA-ATTT
1 TTAATATATTT
11210153 TAAATAACCA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 3 0.09
14 4 0.12
15 26 0.79
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTAATATATTTAATA
Found at i:11210231 original size:21 final size:18
Alignment explanation
Indices: 11210196--11210277 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 18
11210186 TTAATAACCT
*
11210196 TTAATTATAATTAATTTA
1 TTAAATATAATTAATTTA
*
11210214 CTTAAAGTATTATTTAA-TTA
1 -TTAAA-TA-TAATTAATTTA
11210234 TTAAATATAATTAATTTAA
1 TTAAATATAATTAATTT-A
* *
11210253 TCAAAT-TAAAT-ATTCTA
1 TTAAATATAATTAATT-TA
11210270 TTAAATAT
1 TTAAATAT
11210278 TTAACAATAA
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
17 15 0.29
18 10 0.20
19 15 0.29
20 5 0.10
21 6 0.12
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (18 bp):
TTAAATATAATTAATTTA
Found at i:11210369 original size:15 final size:13
Alignment explanation
Indices: 11210310--11210392 Score: 55
Period size: 15 Copynumber: 6.2 Consensus size: 13
11210300 ATTATTATGT
11210310 TATTAATTAATTA
1 TATTAATTAATTA
* *
11210323 TCTTAATT-CTTA
1 TATTAATTAATTA
*
11210335 T-TTAATTAATAAA
1 TATTAATTAAT-TA
11210348 TATTTAATTAACTATA
1 TA-TTAATTAA-T-TA
*
11210364 TATTAATAAATT-
1 TATTAATTAATTA
11210376 TATTAATATAAATTA
1 TATTAAT-T-AATTA
11210391 TA
1 TA
11210393 AAATAATTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
11 6 0.11
12 12 0.22
13 10 0.18
14 5 0.09
15 17 0.31
16 5 0.09
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (13 bp):
TATTAATTAATTA
Found at i:11210447 original size:20 final size:20
Alignment explanation
Indices: 11210424--11210500 Score: 53
Period size: 20 Copynumber: 4.2 Consensus size: 20
11210414 TTTAAATAAA
11210424 TATTAATAAATATAATTTAT
1 TATTAATAAATATAATTTAT
* * * **
11210444 TATTATTATATATGACATAT
1 TATTAATAAATATAATTTAT
11210464 TATT--T-AATA-AA----T
1 TATTAATAAATATAATTTAT
11210476 TATTAATAAATATAATTTAT
1 TATTAATAAATATAATTTAT
11210496 TATTA
1 TATTA
11210501 TATATATGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 16
0.65 0.11 0.25
Matches are distributed among these distances:
12 5 0.12
14 1 0.02
15 4 0.10
16 3 0.07
17 3 0.07
18 1 0.02
20 25 0.60
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (20 bp):
TATTAATAAATATAATTTAT
Found at i:11210483 original size:11 final size:12
Alignment explanation
Indices: 11210340--11210486 Score: 56
Period size: 11 Copynumber: 11.8 Consensus size: 12
11210330 TCTTATTTAA
11210340 TTAATAAA-TAT
1 TTAATAAATTAT
*
11210351 TTAATTAACTATAT
1 TTAA-TAAAT-TAT
11210365 ATTAATAAATTTAT
1 -TTAATAAA-TTAT
*
11210379 TAATATAAATTAT
1 TTA-ATAAATTAT
**
11210392 AAAAT-AATTAT
1 TTAATAAATTAT
** *
11210403 TTTTTAAATAAT
1 TTAATAAATTAT
11210415 TTAAATAAA-TA-
1 TT-AATAAATTAT
11210426 TTAATAAATATAAT
1 TTAATAAAT-T-AT
*
11210440 TT-AT-TATTAT
1 TTAATAAATTAT
11210450 TATATATGACATATTAT
1 T-TA-AT-A-A-ATTAT
11210467 TTAATAAATTA-
1 TTAATAAATTAT
11210478 TTAATAAAT
1 TTAATAAAT
11210487 ATAATTTATT
Statistics
Matches: 103, Mismatches: 14, Indels: 38
0.66 0.09 0.25
Matches are distributed among these distances:
10 9 0.09
11 24 0.23
12 20 0.19
13 18 0.17
14 17 0.17
15 7 0.07
16 2 0.02
17 6 0.06
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (12 bp):
TTAATAAATTAT
Found at i:11210495 original size:17 final size:17
Alignment explanation
Indices: 11210424--11210497 Score: 53
Period size: 17 Copynumber: 4.3 Consensus size: 17
11210414 TTTAAATAAA
11210424 TATTAATAAATATAATT
1 TATTAATAAATATAATT
* * **
11210441 TATTATTATTATATATGACA
1 TATTA--A-TAAATATAATT
* *
11210461 TATTATTTAATA-AA-T
1 TATTAATAAATATAATT
11210476 TATTAATAAATATAATT
1 TATTAATAAATATAATT
11210493 TATTA
1 TATTA
11210498 TTATATATAT
Statistics
Matches: 41, Mismatches: 11, Indels: 10
0.66 0.18 0.16
Matches are distributed among these distances:
15 10 0.24
16 3 0.07
17 15 0.37
19 1 0.02
20 12 0.29
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (17 bp):
TATTAATAAATATAATT
Found at i:11210508 original size:51 final size:51
Alignment explanation
Indices: 11210413--11210523 Score: 181
Period size: 52 Copynumber: 2.2 Consensus size: 51
11210403 TTTTTAAATA
11210413 ATTTAAATAAATATTAATAAATATAATTTATTATTATTATATATGACAT-ATT
1 ATTT-AATAAATATTAATAAATATAATTTATTATTATTATATATGACATCA-T
11210465 ATTTAATAAATTATTAATAAATATAATTTATTATTA-TATATATGACATCAT
1 ATTTAATAAA-TATTAATAAATATAATTTATTATTATTATATATGACATCAT
11210516 ATTTAATA
1 ATTTAATA
11210524 TGTTAAAATA
Statistics
Matches: 57, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
51 27 0.47
52 30 0.53
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (51 bp):
ATTTAATAAATATTAATAAATATAATTTATTATTATTATATATGACATCAT
Found at i:11210547 original size:51 final size:51
Alignment explanation
Indices: 11210413--11210554 Score: 148
Period size: 51 Copynumber: 2.8 Consensus size: 51
11210403 TTTTTAAATA
* *
11210413 ATTTAAATAAA-TATTAATAAATATAATTTATTATTATTATATATGACATATT
1 ATTT-AATAAATTATAAATAAAAATAATTTATTATTA-TATATATGACATATT
* *
11210465 ATTTAATAAATTATTAATAAATATAATTTATTATTATATATATGACATCA-T
1 ATTTAATAAATTATAAATAAAAATAATTTATTATTATATATATGACAT-ATT
** *
11210516 ATTTAATATGTTA-AAATAATTAAATAA-TTATTTTTATAT
1 ATTTAATAAATTATAAATAA--AAATAATTTATTATTATAT
11210555 TGATAATTTA
Statistics
Matches: 81, Mismatches: 5, Indels: 9
0.85 0.05 0.09
Matches are distributed among these distances:
50 5 0.06
51 41 0.51
52 35 0.43
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (51 bp):
ATTTAATAAATTATAAATAAAAATAATTTATTATTATATATATGACATATT
Found at i:11210708 original size:14 final size:14
Alignment explanation
Indices: 11210689--11210716 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
11210679 TAGTTTAATT
11210689 AATTATTAATATTA
1 AATTATTAATATTA
11210703 AATTATTAATATTA
1 AATTATTAATATTA
11210717 CTAATAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTATTAATATTA
Found at i:11211857 original size:9 final size:10
Alignment explanation
Indices: 11211837--11211891 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
11211827 TTAATCCATA
11211837 AATTATTAAT
1 AATTATTAAT
11211847 AATTA-TAAT
1 AATTATTAAT
11211856 AATTAATTAAT
1 AATT-ATTAAT
*
11211867 AACATT-TTATT
1 -A-ATTATTAAT
*
11211878 AAATATTAAT
1 AATTATTAAT
11211888 AATT
1 AATT
11211892 TAATATATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
9 10 0.28
10 14 0.39
11 8 0.22
12 1 0.03
13 3 0.08
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (10 bp):
AATTATTAAT
Found at i:11211896 original size:14 final size:15
Alignment explanation
Indices: 11211875--11211912 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
11211865 ATAACATTTT
11211875 ATTAAATATTA-ATA
1 ATTAAATATTATATA
*
11211889 ATTTAATA-TATATA
1 ATTAAATATTATATA
11211903 ATTAAATATT
1 ATTAAATATT
11211913 TGTTATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
13 2 0.10
14 17 0.85
15 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAAATATTATATA
Found at i:11211920 original size:35 final size:33
Alignment explanation
Indices: 11211881--11211945 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 33
11211871 TTTTATTAAA
11211881 TATTAATAATTTAATA-TATATAATTAAATATTTGT
1 TATTAATAATTT-ATAGTATA-AATT-AATATTTGT
11211916 TATTAATAATTTATAGTATAAATTAATATT
1 TATTAATAATTTATAGTATAAATTAATATT
11211946 ATACTCAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 6 0.21
34 7 0.24
35 16 0.55
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (33 bp):
TATTAATAATTTATAGTATAAATTAATATTTGT
Found at i:11212238 original size:16 final size:18
Alignment explanation
Indices: 11212217--11212249 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
11212207 TTATTTTATA
11212217 TTAATAA-A-TTATATTG
1 TTAATAATAGTTATATTG
11212233 TTAATAATAGTTATATT
1 TTAATAATAGTTATATT
11212250 TAATTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (18 bp):
TTAATAATAGTTATATTG
Found at i:11212328 original size:18 final size:18
Alignment explanation
Indices: 11212307--11212364 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 18
11212297 AATAAATAGA
11212307 TATTAATTAATATTATAT
1 TATTAATTAATATTATAT
*
11212325 TATTAAGTATAAATATTATAA
1 TATTAA-T-T-AATATTATAT
*
11212346 TATGAA-TAATATTAATAT
1 TATTAATTAATATT-ATAT
11212364 T
1 T
11212365 TAACATTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
17 6 0.18
18 11 0.33
19 1 0.03
20 1 0.03
21 14 0.42
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (18 bp):
TATTAATTAATATTATAT
Found at i:11212585 original size:20 final size:20
Alignment explanation
Indices: 11212569--11212606 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11212559 ATAATTTATA
*
11212569 ATAAATAATTAATATTTACT
1 ATAAATAAGTAATATTTACT
*
11212589 ATTAATAAGTAATATTTA
1 ATAAATAAGTAATATTTA
11212607 AATGTTCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (20 bp):
ATAAATAAGTAATATTTACT
Found at i:11212827 original size:12 final size:11
Alignment explanation
Indices: 11212810--11212848 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
11212800 ATTGAAAGTT
11212810 ATTAATTATTA
1 ATTAATTATTA
*
11212821 GATTAATTATAAA
1 -ATTAATTAT-TA
11212834 ATTAATTATTA
1 ATTAATTATTA
11212845 ATTA
1 ATTA
11212849 TATAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 5 0.21
12 18 0.75
13 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (11 bp):
ATTAATTATTA
Found at i:11213037 original size:12 final size:12
Alignment explanation
Indices: 11213016--11213049 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
11213006 AATTAATAAT
11213016 TAAT-AATATTA
1 TAATAAATATTA
11213027 TAATAAATATTA
1 TAATAAATATTA
11213039 TAATAATATAT
1 TAATAA-ATAT
11213050 ATAGATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.19
12 13 0.62
13 4 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATAAATATTA
Found at i:11213051 original size:15 final size:14
Alignment explanation
Indices: 11213011--11213051 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 14
11213001 TAGAAAATTA
11213011 ATAATTAATAATATT
1 ATAA-TAATAATATT
11213026 ATAAT-A-AATATT
1 ATAATAATAATATT
11213038 ATAATAATATATAT
1 ATAATAATA-ATAT
11213052 AGATTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
12 11 0.48
13 2 0.09
14 2 0.09
15 8 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAATAATAATATT
Found at i:11213250 original size:43 final size:44
Alignment explanation
Indices: 11213202--11213286 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 44
11213192 ATGGCCACAA
* *
11213202 TTATTTGAA-TTGATTTGGTAAACATATTCA-CTTTTTAAATCAC
1 TTATTTGAATTTG-TTCGGTAAACAAATTCATCTTTTTAAATCAC
* *
11213245 TTATTTGAATTTGTTCGGTAAACAAATTTATTTTTTTAAATC
1 TTATTTGAATTTGTTCGGTAAACAAATTCATCTTTTTAAATC
11213287 TCTTTCATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 23 0.64
44 13 0.36
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.49
Consensus pattern (44 bp):
TTATTTGAATTTGTTCGGTAAACAAATTCATCTTTTTAAATCAC
Found at i:11214124 original size:16 final size:13
Alignment explanation
Indices: 11214091--11214116 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11214081 CTATATCTAT
11214091 TAAATAATTAATA
1 TAAATAATTAATA
11214104 TAAATAATTAATA
1 TAAATAATTAATA
11214117 ATTCAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATAATTAATA
Found at i:11214301 original size:26 final size:26
Alignment explanation
Indices: 11214237--11214291 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
11214227 ATTAAATAGA
11214237 AATAATT-AT-ATTAATAAAATTATT
1 AATAATTAATAATTAATAAAATTATT
*
11214261 AATAATTAATAATTATTAAAA-TATT
1 AATAATTAATAATTAATAAAATTATT
11214286 AATAAT
1 AATAAT
11214292 ATTTTAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 7 0.25
25 12 0.43
26 9 0.32
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
AATAATTAATAATTAATAAAATTATT
Found at i:11214575 original size:181 final size:180
Alignment explanation
Indices: 11214326--11215538 Score: 880
Period size: 181 Copynumber: 6.9 Consensus size: 180
11214316 AAATTAAACA
* *
11214326 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATTG-CCTTTTGTTTTATC
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTA-TGATCTTTTATTTTATC
* *
11214390 ATAAACTAATTATTTCTATTCATAAAAGCTTATTCGAAATAAAATAATACTAATTTATTAAAATT
65 ATAAACTAATTATTTCTATTCATACAAGCTTATTC-AAATAAAATAATACTAATTTATTAATATT
* * * * *
11214455 CCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACCTAGCAAG
129 CTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTATCGAACAAG
* * * * * *
11214507 TTCCAATAGTTATGAGTATTTGAACAATTATTTATTTCATATTGTTATGATCTTTTATTTTGTCA
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGATCTTTTATTTTATCA
* * * *
11214572 TAAAAC-AATTGTTTCTATTCGTACAAGTTTATTCGAAATAAAACAATACTAATTTATTAATATT
66 T-AAACTAATTATTTCTATTCATACAAGCTTATTC-AAATAAAATAATACTAATTTATTAATATT
** * * * *
11214636 CTAAAAATTAATAAGTTGGAGACTTAAAAAATAAATATGTTTA-CTGAACAAT
129 CTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTATC-GAACAAG
* ** * * * **
11214688 TTCAAATAGTCATGTTTATTTGAACTATTATCTATTTCAAATCATTACGA-CATTTT-TTTGGTC
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGATC-TTTTATTTTATC
** *
11214751 ATAAAAC-AATTATTTCTATTCATACAATATTATTCAGAATAAAATAGTACTAATTTATTAATAT
65 AT-AAACTAATTATTTCTATTCATACAAGCTTATTCA-AATAAAATAATACTAATTTATTAATAT
* * * **
11214815 TATAAAAA-T--TAA-TAAGAGATTTAAAAACTAAATCTATTTATCGAGCCGG
128 TCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTATCGAACAAG
* * * * * *
11214864 TTTAAATAGTTATAATTATTTGAACAATCATCTATCTCAAATCGTTATGATC-TTTATTTTATCG
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGATCTTTTATTTTATCA
* * * ** * * * *
11214928 TAAAATAATTGTTTCCTATTTATACAAATTTATTCAAAGTAAAATATTGCTAAATTAATAATATT
66 TAAACTAATTATTT-CTATTCATACAAGCTTATTCAAA-TAAAATAATACTAATTTATTAATATT
* * * * *
11214993 CTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTCATGGAACCAG
129 CTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTATCGAACAAG
* * * * * * * *
11215045 TTCAAATAGTTAAGACTATTAGAATAATTATCTATTTCAAATTGTTCT-AACATTTTGTTTAATC
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGATC-TTTTATTTTATC
* * *
11215109 ATAAAATAATT-TTTC-AGTTCATACATGCTTATTC----AAAAT-A-A--AA--TAAT-AT-TT
65 ATAAACTAATTATTTCTA-TTCATACAAGCTTATTCAAATAAAATAATACTAATTTATTAATATT
* * * * *
11215160 C-AAAAATAAATAAGTAACTA-ATTTGAAAGAATAAAT-TAGTTTACCCAATC-AG
129 CTAAAAATTAATAAGTAA-GAGATTT-AAAAAATAAATCTA-TTTATCGAA-CAAG
* * * * * *
11215212 TTCAAATAATTAT-AGCCATTTAAACAATTATCTATTTCAAATTGTTACT-A-CATTTTGTTTTG
1 TTCAAATAGTTATGA-CTATTTGAACAATTATCTATTTCAAATCGTTA-TGATC-TTTTATTTTA
* * * * *
11215274 TCATAAAAC-AATTGTTTTTCA-ACATACAAGCTTATTTGAAATAAAATAATACCAATTTATTAA
63 TCAT-AAACTAATTATTTCT-ATTCATACAAGCTTA-TTCAAATAAAATAATACTAATTTATTAA
* * * * *
11215337 TATTTTTAAGAA-T--TAA-TAAGACATTTAAAAAATAAATC-AGTTTATTGAACTAG
125 TA-TTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTA-TTTATCGAACAAG
* * *
11215390 TTCAAATAGTTATAACTATTTGAAC-A--AT-T-TTT---A-C---A--ACCTTTTATTCTATCA
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGATCTTTTATTTTATCA
* * * **
11215441 TAAAAC-AATTGTTTATGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTAGCAATATT
66 T-AAACTAATTATTTCTATTCATACAAGCTTATTC-AAATAAAATAATACTAATTTATTAATATT
* *
11215505 CTAAAAATGAATAACTAAGAGATTTAAAAAATAA
129 CTAAAAATTAATAAGTAAGAGATTTAAAAAATAA
11215539 TAATTTAGTA
Statistics
Matches: 828, Mismatches: 150, Indels: 122
0.75 0.14 0.11
Matches are distributed among these distances:
163 9 0.01
164 62 0.07
165 1 0.00
166 25 0.03
167 95 0.11
168 22 0.03
169 6 0.01
170 2 0.00
171 2 0.00
173 8 0.01
174 2 0.00
175 14 0.02
176 81 0.10
177 55 0.07
178 42 0.05
179 14 0.02
180 97 0.12
181 262 0.32
182 25 0.03
183 4 0.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (180 bp):
TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGATCTTTTATTTTATCA
TAAACTAATTATTTCTATTCATACAAGCTTATTCAAATAAAATAATACTAATTTATTAATATTCT
AAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTATCGAACAAG
Found at i:11214962 original size:357 final size:359
Alignment explanation
Indices: 11214326--11215156 Score: 937
Period size: 357 Copynumber: 2.3 Consensus size: 359
11214316 AAATTAAACA
* * * * *
11214326 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATTGCCTTTTGTTTTATCA
1 TTCAAATAGTTATGACTATTTGAACTATTATCTATTTCAAATCATTATCGCATTTTGTTTGATCA
* *
11214391 TAAACTAATTATTTCTATTCATAAAAGCTTATTCGAAATAAAATAATACTAATTTATTAAAATTC
66 TAAACTAATTATTTCTATTCATAAAAGATTATTCGAAATAAAATAATACTAATTTATTAAAATTA
* * *
11214456 CAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACCTAGCAAGTTCCAATAGTTATG
131 CAAAAATTAATAAG---AAGATTTAAAAAATAAATCTATTTACCGAGCAAGTTCAAATAGTTATA
* * * * * *
11214521 AGTATTTGAACAATTATTTATTTCATATTGTTATGATCTTTTATTTTGTCATAAAACAATTGTTT
193 AGTATTTGAACAATCATCTATCTCAAATCGTTATGATCTTTTATTTTATCATAAAACAATTGTTT
* * * *
11214586 CTATTCGTACAAGTTTATTCGAAA-TAAAACAATACTAATTTATTAATATTCTAAAAATTAATAA
258 CTATTCATACAAATTTATTC-AAAGTAAAACAATACTAAATTAATAATATTCTAAAAATTAATAA
** * *
11214650 GTTGGAGACTTAAAAAATAAATATGTTTACT-GAACAAT
322 GTAAGAGACTTAAAAAATAAATATGTTCA-TGGAACAAG
* ** *
11214688 TTCAAATAGTCATGTTTATTTGAACTATTATCTATTTCAAATCATTA-CGACATTTT-TTTGGTC
1 TTCAAATAGTTATGACTATTTGAACTATTATCTATTTCAAATCATTATCG-CATTTTGTTTGATC
* * * *
11214751 ATAAAAC-AATTATTTCTATTCATACAATATTATTC-AGAATAAAATAGTACTAATTTATTAATA
65 AT-AAACTAATTATTTCTATTCATAAAAGATTATTCGA-AATAAAATAATACTAATTTATTAAAA
* * * ** *
11214814 TTATAAAAATTAATAAG-AGATTTAAAAACTAAATCTATTTATCGAGCCGGTTTAAATAGTTATA
128 TTACAAAAATTAATAAGAAGATTTAAAAAATAAATCTATTTACCGAGCAAGTTCAAATAGTTATA
* * *
11214878 ATTATTTGAACAATCATCTATCTCAAATCGTTATGATC-TTTATTTTATCGTAAAATAATTGTTT
193 AGTATTTGAACAATCATCTATCTCAAATCGTTATGATCTTTTATTTTATCATAAAACAATTGTTT
* * * *
11214942 CCTATTTATACAAATTTATTCAAAGTAAAATATTGCTAAATTAATAATATTCTAAAAATTAATAA
258 -CTATTCATACAAATTTATTCAAAGTAAAACAATACTAAATTAATAATATTCTAAAAATTAATAA
* * *
11215007 GTAAGAGATTTAAAAAATAAATGTGTTCATGGAACCAG
322 GTAAGAGACTTAAAAAATAAATATGTTCATGGAACAAG
* * ** * ** *
11215045 TTCAAATAGTTAAGACTATTAGAA-TAATTATCTATTTCAAATTGTTCTAACATTTTGTTTAATC
1 TTCAAATAGTTATGACTATTTGAACT-ATTATCTATTTCAAATCATTATCGCATTTTGTTTGATC
* * * * *
11215109 ATAAAATAATT-TTTC-AGTTCATACATGCTTATTCAAAATAAAATAATA
65 ATAAACTAATTATTTCTA-TTCATAAAAGATTATTCGAAATAAAATAATA
11215157 TTTCAAAAAT
Statistics
Matches: 392, Mismatches: 65, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
356 29 0.07
357 227 0.58
358 12 0.03
360 1 0.00
361 72 0.18
362 51 0.13
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (359 bp):
TTCAAATAGTTATGACTATTTGAACTATTATCTATTTCAAATCATTATCGCATTTTGTTTGATCA
TAAACTAATTATTTCTATTCATAAAAGATTATTCGAAATAAAATAATACTAATTTATTAAAATTA
CAAAAATTAATAAGAAGATTTAAAAAATAAATCTATTTACCGAGCAAGTTCAAATAGTTATAAGT
ATTTGAACAATCATCTATCTCAAATCGTTATGATCTTTTATTTTATCATAAAACAATTGTTTCTA
TTCATACAAATTTATTCAAAGTAAAACAATACTAAATTAATAATATTCTAAAAATTAATAAGTAA
GAGACTTAAAAAATAAATATGTTCATGGAACAAG
Found at i:11215585 original size:7 final size:7
Alignment explanation
Indices: 11215568--11215596 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
11215558 TTATTATTTT
11215568 ATTAA-A
1 ATTAATA
11215574 ATTAATA
1 ATTAATA
11215581 ATTAATA
1 ATTAATA
11215588 ATTAATA
1 ATTAATA
11215595 AT
1 AT
11215597 AGATCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.23
7 17 0.77
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
ATTAATA
Found at i:11215795 original size:15 final size:15
Alignment explanation
Indices: 11215775--11215803 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
11215765 TAGATTTAAT
11215775 ATAAATTATTGATTA
1 ATAAATTATTGATTA
11215790 ATAAATTATTGATT
1 ATAAATTATTGATT
11215804 TATTTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (15 bp):
ATAAATTATTGATTA
Found at i:11215943 original size:6 final size:6
Alignment explanation
Indices: 11215932--11215970 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
11215922 AATAAAAAGC
* *
11215932 TTAATA TTAATA TCAATA TTAA-A TTAGTA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
11215971 ACAATATTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (6 bp):
TTAATA
Found at i:11215966 original size:17 final size:17
Alignment explanation
Indices: 11215932--11215971 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
11215922 AATAAAAAGC
11215932 TTAATATTAATATCAATA
1 TTAA-ATTAATATCAATA
* *
11215950 TTAAATTAGTATTAATA
1 TTAAATTAATATCAATA
11215967 TTAAA
1 TTAAA
11215972 CAATATTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
TTAAATTAATATCAATA
Found at i:11216887 original size:28 final size:29
Alignment explanation
Indices: 11216864--11216925 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
11216854 CAAATTATAT
11216864 ATAATTAATAT-TAAAAATTTAATTAAAA
1 ATAATTAATATATAAAAATTTAATTAAAA
* *
11216892 ATTATTAATATATAATAA-TT-ATTAAAA
1 ATAATTAATATATAAAAATTTAATTAAAA
11216919 AGTAATT
1 A-TAATT
11216926 TAAATTATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 8 0.28
28 16 0.55
29 5 0.17
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (29 bp):
ATAATTAATATATAAAAATTTAATTAAAA
Found at i:11216915 original size:39 final size:37
Alignment explanation
Indices: 11216860--11216935 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 37
11216850 TAATCAAATT
*
11216860 ATATATAATTAATATTAAAAATTTAATTAAAAATTATTA
1 ATATATAATTAATATTAAAAA-GTAATT-AAAATTATTA
*
11216899 ATATATAA-TAATTATTAAAAAGTAATTTAAATTATTA
1 ATATATAATTAA-TATTAAAAAGTAATTAAAATTATTA
11216936 CTAAATAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 9 0.26
38 8 0.24
39 17 0.50
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (37 bp):
ATATATAATTAATATTAAAAAGTAATTAAAATTATTA
Found at i:11217491 original size:181 final size:178
Alignment explanation
Indices: 11217124--11217944 Score: 771
Period size: 181 Copynumber: 4.6 Consensus size: 178
11217114 AATAAGATAT
* * * * * * * * * * *
11217124 TATTTTAAATCGTTATCACCTTTTGTTTGGTCATATAACTATTGTTTTTTTATCATACATGATTA
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTAT-TCATACAAGCTTA
* *
11217189 TTCGAAATAAAATAATAATAATTTATTAATCTTTCAAAAATTAATAAAA-GATTTAAAAAATGAA
65 TTCGAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAAAGGATTTAAAAAATAAA
* * * *
11217253 TCTATTTACCGAACCAGTTCAAATAGTTATGACTATTTGAATAATTCTA
130 TCTATTTACCGAACCAATTCAAATAGTTAAGACTATTTGAACAATTATA
* * * * * *
11217302 TTTTTCAAATCATTATAACATTTTGTTATGTCATAAAATAATTATTTCTATTCATACAAGCTTAT
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
* * * * * *
11217367 AT-AAAATAAAACAATACTAATCTAATAATATTCCAAAAATTAATAACTAAGGGATTTAAAAAAT
66 -TCGAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAA--AA-GGATTTAAAAAAT
* * * * *
11217431 AAATTTGTTTACCGAACCAATTGAAATAGTTAAGACTATATGAACAATTATC
127 AAATCTATTTACCGAACCAATTCAAATAGTTAAGACTATTTGAACAATTATA
* * * * * *
11217483 TATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATT-TTCTCAATTCATACTAGGTTA
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTT-TCTATTCATACAAGCTTA
* *
11217547 TTGGAAATAAAATAA-AATGAATTTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAA
65 TTCGAAATAAAATAATAAT-AATTTATTAATATTTCAAAAATTAATAA--AAG-GATTTAAAAAA
* * * * * *
11217611 TAATTCTATTTACCTAACCAATTCAAAAAATT-ATACTATTTGAACAATTAGA
126 TAAATCTATTTACCGAACCAATTCAAATAGTTAAGACTATTTGAACAATTATA
* * * * * ** * *
11217663 TATTTCAAATCATTATTACTTTTTATTTTGTCATACAACAAATGTTTTTGCTCATATAAGTTTAT
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
* * * * *
11217728 TCCG-AATAAAGTAATAGTAATCTATTAATATTTCAAAAA-T--T-AAAGTGATTTAGACAATAA
66 T-CGAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAAAG-GATTTAAAAAATAA
* * * * * * * *
11217788 ATCTATGTATCAAACTAATTCAAATAGTTATGACTATTTGAGCAATAATT
129 ATCTATTTACCGAACCAATTCAAATAGTTAAGACTATTTGAACAATTATA
**
11217838 TATTTCAAATCATTATGACTTTTTGTTTTGTTGTAAAACAATTGTTTCTATTCATACAAGCTTAT
1 TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
* * * **
11217903 TTGAATTAAAATAATACTAATTTATTAATATTTTGAAAATTA
66 TCGAAATAAAATAATAATAATTTATTAATATTTCAAAAATTA
11217945 GTAAGCAAAA
Statistics
Matches: 514, Mismatches: 113, Indels: 33
0.78 0.17 0.05
Matches are distributed among these distances:
174 38 0.07
175 98 0.19
176 2 0.00
177 50 0.10
178 39 0.08
179 3 0.01
180 100 0.19
181 184 0.36
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (178 bp):
TATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
TCGAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAAAGGATTTAAAAAATAAAT
CTATTTACCGAACCAATTCAAATAGTTAAGACTATTTGAACAATTATA
Found at i:11217915 original size:355 final size:356
Alignment explanation
Indices: 11217176--11217944 Score: 836
Period size: 355 Copynumber: 2.2 Consensus size: 356
11217166 TGTTTTTTTA
* *
11217176 TCATACATGATTATTCGAAATAAAATAATAATAATTTATTAATCTTTCAAAAATTAATAAAAGAT
1 TCATACAAGATTATTCGAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAAAGAT
* * * * ** *
11217241 TTAAAAAATGAATCTATTTACCGAACCAGTTCAAATAGTTATGACTATTTGAATAATTCTATTTT
66 TTAAAAAATGAATCTATTTACCGAACCAATTCAAAAAATTATGACTATTTGAACAATTAGATATT
* * * *
11217306 TCAAATCATTATAACATTTTGTTATGTCATAAAATAATTATTTCTATTCATACAAGCTTATATAA
131 TCAAATCATTATAACATTTTATTATGTCATAAAACAAATATTTCTACTCATACAAGCTTATATAA
*
11217371 AATAAAACAATACTAATCTAATAATATTCCAAAAATTAATAACTAAGGGATTTAAAAAATAAATT
196 AATAAAACAATACTAATCTAATAATATTCCAAAAATT-ATAAC-AAGGGATTTAAAAAATAAATC
* * * * * *
11217436 TGTTTACCGAACCAATTGAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCGTTATGA
259 TATGTACCAAACCAATTCAAATAGTTAAGACTATATGAACAATAATCTATTTCAAATCATTATGA
11217501 CCTTTTGTCTTGTCATAAAACAATTTTCTCAAT
324 CCTTTTGTCTTGTCATAAAACAATTTTCTCAAT
* * *
11217534 TCATACTAGGTTATTGGAAATAAAATAA-AATGAATTTATTAATATTTCAAAAAATAATAAGTAA
1 TCATACAAGATTATTCGAAATAAAATAATAAT-AATTTATTAATATTTC-AAAAAT--TAA-TAA
* *
11217598 GAGATTTAAAAAAT-AATTCTATTTACCTAACCAATTCAAAAAATTAT-ACTATTTGAACAATTA
61 AAGATTTAAAAAATGAA-TCTATTTACCGAACCAATTCAAAAAATTATGACTATTTGAACAATTA
* * * * * * * * *
11217661 GATATTTCAAATCATTATTACTTTTTATTTTGTCATACAACAAATGTTTTTGCTCATATAAGTTT
125 GATATTTCAAATCATTATAACATTTTATTATGTCATAAAACAAATATTTCTACTCATACAAGCTT
** ** * * * * * *
11217726 AT-TCCGAATAAAGTAATAGTAATCTATTAATATTTCAAAAA-T-T-A-AAGTGATTTAGACAAT
190 ATAT-AAAATAAAACAATACTAATCTAATAATATTCCAAAAATTATAACAAGGGATTTAAAAAAT
* * * * * *
11217786 AAATCTATGTATCAAACTAATTCAAATAGTTATGACTATTTGAGCAATAATTTATTTCAAATCAT
254 AAATCTATGTACCAAACCAATTCAAATAGTTAAGACTATATGAACAATAATCTATTTCAAATCAT
* * ** *
11217851 TATGACTTTTTGTTTTGTTGTAAAACAATTGTT-TCTAT
319 TATGACCTTTTGTCTTGTCATAAAACAATT-TTCTCAAT
* * * * **
11217889 TCATACAAGCTTATTTGAATTAAAATAATACTAATTTATTAATATTTTGAAAATTA
1 TCATACAAGATTATTCGAAATAAAATAATAATAATTTATTAATATTTCAAAAATTA
11217945 GTAAGCAAAA
Statistics
Matches: 340, Mismatches: 62, Indels: 24
0.80 0.15 0.06
Matches are distributed among these distances:
352 2 0.01
354 5 0.01
355 134 0.39
356 4 0.01
357 4 0.01
358 40 0.12
359 6 0.02
360 2 0.01
361 101 0.30
362 42 0.12
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.39
Consensus pattern (356 bp):
TCATACAAGATTATTCGAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAAAGAT
TTAAAAAATGAATCTATTTACCGAACCAATTCAAAAAATTATGACTATTTGAACAATTAGATATT
TCAAATCATTATAACATTTTATTATGTCATAAAACAAATATTTCTACTCATACAAGCTTATATAA
AATAAAACAATACTAATCTAATAATATTCCAAAAATTATAACAAGGGATTTAAAAAATAAATCTA
TGTACCAAACCAATTCAAATAGTTAAGACTATATGAACAATAATCTATTTCAAATCATTATGACC
TTTTGTCTTGTCATAAAACAATTTTCTCAAT
Found at i:11218005 original size:152 final size:152
Alignment explanation
Indices: 11217809--11218084 Score: 376
Period size: 152 Copynumber: 1.8 Consensus size: 152
11217799 AAACTAATTC
* * * * * * **
11217809 AAATAGTTATGACTATTTGAGCAATAATTTATTTCAAATCATTATGACTTTTTGTTTTGTTGTAA
1 AAATAATTATGACAATTTGAACAATAATCTATTTCAAATCATTATGACCTTTTGATTTGTCATAA
** *
11217874 AACAATTGTTTCTA-TTCATACAAGCTTATT-TGAATTAAAATAATACTAATTTATTAATATTTT
66 AACAATTGTTTC-AGTTCATACAAGCTTATTCAAAATT-AAATAATACTAACTTATTAATATTTT
11217937 GAAAATTAGTAAGCAAAAAATTTT
129 GAAAATTAGTAAGCAAAAAATTTT
* * *
11217961 AAATAATTATGACAATTTGAATAATTATCTATTTCAAATTATTATGACCTTTTGATTTGTCATAA
1 AAATAATTATGACAATTTGAACAATAATCTATTTCAAATCATTATGACCTTTTGATTTGTCATAA
* *
11218026 AAGAATTGTTTCAGTTCATATAAGCTTATTCAAAATTAAATAATACTAACTTATTAATA
66 AACAATTGTTTCAGTTCATACAAGCTTATTCAAAATTAAATAATACTAACTTATTAATA
11218085 ATCCAAAAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
151 1 0.01
152 101 0.95
153 4 0.04
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.43
Consensus pattern (152 bp):
AAATAATTATGACAATTTGAACAATAATCTATTTCAAATCATTATGACCTTTTGATTTGTCATAA
AACAATTGTTTCAGTTCATACAAGCTTATTCAAAATTAAATAATACTAACTTATTAATATTTTGA
AAATTAGTAAGCAAAAAATTTT
Found at i:11218672 original size:18 final size:19
Alignment explanation
Indices: 11218651--11218690 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
11218641 AAATATTAAA
11218651 ATTTCAA-ATAATAAAATT
1 ATTTCAATATAATAAAATT
* *
11218669 ATTTGAATGTAATAAAATT
1 ATTTCAATATAATAAAATT
11218688 ATT
1 ATT
11218691 GACATGATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (19 bp):
ATTTCAATATAATAAAATT
Found at i:11218778 original size:19 final size:20
Alignment explanation
Indices: 11218756--11218803 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
11218746 TTATAATAAA
*
11218756 ATATAATAT-AATAATTATT
1 ATATAATATCAATAAATATT
*
11218775 ATATTAT-TCAATAAATATT
1 ATATAATATCAATAAATATT
11218794 ATATTAATAT
1 ATA-TAATAT
11218804 TAAAGTAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.04
19 18 0.78
20 3 0.13
21 1 0.04
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
ATATAATATCAATAAATATT
Found at i:11220688 original size:13 final size:13
Alignment explanation
Indices: 11220670--11220696 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11220660 AATAATATGC
11220670 TGTTTATATTAAT
1 TGTTTATATTAAT
11220683 TGTTTATATTAAT
1 TGTTTATATTAAT
11220696 T
1 T
11220697 ATTACTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TGTTTATATTAAT
Found at i:11221008 original size:178 final size:180
Alignment explanation
Indices: 11220808--11221171 Score: 714
Period size: 180 Copynumber: 2.0 Consensus size: 180
11220798 TTTATCTAAA
11220808 ATAATTAGCTAATTTATTAAAATAATAATAAATTATGACAATTTATCTGTA-ATATATA-TTATA
1 ATAATTAGCTAATTTATTAAAATAATAATAAATTATGACAATTTATCTGTATATATATATTTATA
11220871 TAATTATGCATAAATCGAAGTTCTAATTAATTATTCCTAATTATTCATGATTTAAATAAATTAAA
66 TAATTATGCATAAATCGAAGTTCTAATTAATTATTCCTAATTATTCATGATTTAAATAAATTAAA
11220936 TTAAATTAATATAATCTAATTAAATATTTATTAAAATCCTTATTAAATAT
131 TTAAATTAATATAATCTAATTAAATATTTATTAAAATCCTTATTAAATAT
11220986 ATAATTAGCTAATTTATTAAAATAATAATAAATTATGACAATTTATCTGTATATATATATTTATA
1 ATAATTAGCTAATTTATTAAAATAATAATAAATTATGACAATTTATCTGTATATATATATTTATA
11221051 TAATTATGCATAAATCGAAGTTCTAATTAATTATTCCTAATTATTCATGATTTAAATAAATTAAA
66 TAATTATGCATAAATCGAAGTTCTAATTAATTATTCCTAATTATTCATGATTTAAATAAATTAAA
11221116 TTAAATTAATATAATCTAATTAAATATTTATTAAAATCCTTATTAAATAT
131 TTAAATTAATATAATCTAATTAAATATTTATTAAAATCCTTATTAAATAT
11221166 ATAATT
1 ATAATT
11221172 CAATAATTTA
Statistics
Matches: 184, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
178 51 0.28
179 7 0.04
180 126 0.68
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.44
Consensus pattern (180 bp):
ATAATTAGCTAATTTATTAAAATAATAATAAATTATGACAATTTATCTGTATATATATATTTATA
TAATTATGCATAAATCGAAGTTCTAATTAATTATTCCTAATTATTCATGATTTAAATAAATTAAA
TTAAATTAATATAATCTAATTAAATATTTATTAAAATCCTTATTAAATAT
Found at i:11221462 original size:21 final size:21
Alignment explanation
Indices: 11221437--11221495 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
11221427 ATAATTATAC
*
11221437 ATAATATTGATATTATTATTT
1 ATAATATTGATATTATTAGTT
*
11221458 GTAATA-TGTATATTAATTAGTT
1 ATAATATTG-ATATT-ATTAGTT
*
11221480 ATAATATT-ATTTTATT
1 ATAATATTGATATTATT
11221496 CTAATATAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
20 5 0.16
21 14 0.45
22 11 0.35
23 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (21 bp):
ATAATATTGATATTATTAGTT
Found at i:11222118 original size:24 final size:23
Alignment explanation
Indices: 11222091--11222192 Score: 73
Period size: 25 Copynumber: 4.2 Consensus size: 23
11222081 GTTATATTAG
11222091 TATAATTGATAAATATAATTAATT
1 TATAATT-ATAAATATAATTAATT
*
11222115 TATAAATTA-ATATATAATATGAATT
1 TAT-AATTATAAATATAAT-T-AATT
* * *
11222140 ATATATTTATAACTAT-GTTAATT
1 -TATAATTATAAATATAATTAATT
* *
11222163 TATAAATAATAAATTATAATTATTT
1 TAT-AATTATAAA-TATAATTAATT
11222188 TATAA
1 TATAA
11222193 CAAATATTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 16
0.70 0.12 0.19
Matches are distributed among these distances:
22 3 0.05
23 18 0.30
24 11 0.18
25 21 0.35
26 7 0.12
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (23 bp):
TATAATTATAAATATAATTAATT
Found at i:11222977 original size:19 final size:21
Alignment explanation
Indices: 11222946--11222984 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
11222936 AATAACTTAT
11222946 TATTTATATTATTAT-ATAAA
1 TATTTATATTATTATGATAAA
11222966 TATTTA-ATTATTATGATAA
1 TATTTATATTATTATGATAA
11222985 TTTTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (21 bp):
TATTTATATTATTATGATAAA
Done.