Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 50 of 130
Found at i:11288853 original size:19 final size:20
Alignment explanation
Indices: 11288825--11288864 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
11288815 TTTTAAAATA
*
11288825 ATAATAAATATTAA-TTATT
1 ATAATAAATAATAATTTATT
*
11288844 ATAATTAATAATAATTTATT
1 ATAATAAATAATAATTTATT
11288864 A
1 A
11288865 ATAGTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAATAAATAATAATTTATT
Found at i:11288983 original size:15 final size:15
Alignment explanation
Indices: 11288965--11288998 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11288955 TATTAAAATT
11288965 TATTATAAAATAAAA
1 TATTATAAAATAAAA
* *
11288980 TATTATAAGATAAGA
1 TATTATAAAATAAAA
11288995 TATT
1 TATT
11288999 TAATGTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (15 bp):
TATTATAAAATAAAA
Found at i:11289049 original size:33 final size:33
Alignment explanation
Indices: 11289012--11289107 Score: 113
Period size: 33 Copynumber: 2.9 Consensus size: 33
11289002 TGTTATATTA
11289012 AATAA-AATTAATATAATATTTATTATAATAAAT
1 AATAACAATTAATATAATA-TTATTATAATAAAT
* * * *
11289045 AATAATAAATAATATTATATTGTTATAATAAAT
1 AATAACAATTAATATAATATTATTATAATAAAT
* *
11289078 AATAACAATAAATATAATAATAATTATAAT
1 AATAACAATTAATATAAT-ATTATTATAAT
11289108 TGTTTTCATA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
33 32 0.62
34 20 0.38
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (33 bp):
AATAACAATTAATATAATATTATTATAATAAAT
Found at i:11289060 original size:25 final size:26
Alignment explanation
Indices: 11289005--11289063 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
11288995 TATTTAATGT
*
11289005 TATATTA-AATAAAATTAATATAATA
1 TATATTATAATAAAAATAATATAATA
*
11289030 TTTATTATAATAAATAATAATA-AATA
1 TATATTATAATAAA-AATAATATAATA
11289056 -ATATTATA
1 TATATTATA
11289064 TTGTTATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 13 0.45
26 10 0.34
27 6 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
TATATTATAATAAAAATAATATAATA
Found at i:11289099 original size:12 final size:12
Alignment explanation
Indices: 11289069--11289107 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
11289059 TTATATTGTT
11289069 ATAATAAATAATA
1 ATAATAAAT-ATA
*
11289082 ACAATAAATATA
1 ATAATAAATATA
*
11289094 ATAATAATTATA
1 ATAATAAATATA
11289106 AT
1 AT
11289108 TGTTTTCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 15 0.65
13 8 0.35
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (12 bp):
ATAATAAATATA
Found at i:11290073 original size:179 final size:180
Alignment explanation
Indices: 11289701--11290128 Score: 518
Period size: 179 Copynumber: 2.4 Consensus size: 180
11289691 GCTCACGATG
* * * *
11289701 ATTTGAAATAGATTATTATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACATATTTATT
1 ATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTATTCAGTAAACAGATTTA-T
*
11289766 TTTTAAATCTTTTACTTATAAATTATCGAAATATTAATAAATTAATATTATTTTATTCTAAATAA
65 TTTTAAATCTTTTACTTATAAATTATCGAAATATTAATAAATTAATATTATTTTATTCAAAATAA
* ** *
11289831 GCGGGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAAGTCATAATA
130 GCGGGTATAAACAAAAACAATCATTTTATGACAAAACAAAAAGTCATAACA
* * * *
11289882 ATTTGAAATAAATAATTATCCAAATTGTCATAACGATTTGAACTTGTTCAGTAAACAGATTTATT
1 ATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTATTCAGTAAACAGATTTATT
* * ** *
11289947 TTTAAATCTTTTACTTATTAATTGTCTTAAT-TTAATAAATTTATATTATTTTATTCAAAATAAG
66 TTTAAATCTTTTACTTATAAATTATCGAAATATTAATAAATTAATATTATTTTATTCAAAATAAG
** * * * * *
11290011 CTTGTATAAACAGAAAA-AATCATTTTATGACAAAGCAAAAGGTTATAGCG
131 CGGGTATAAACA-AAAACAATCATTTTATGACAAAACAAAAAGTCATAACA
** * * * * * * *
11290061 ATTTTCAATAAATAATTGTTCAAATAATTATAATTATTTAAACTTATTCAGTAAATAGATTCATT
1 ATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTATTCAGTAAACAGATTTATT
11290126 TTT
66 TTT
11290129 TATTAATTAC
Statistics
Matches: 208, Mismatches: 38, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
179 120 0.58
180 33 0.16
181 55 0.26
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (180 bp):
ATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTATTCAGTAAACAGATTTATT
TTTAAATCTTTTACTTATAAATTATCGAAATATTAATAAATTAATATTATTTTATTCAAAATAAG
CGGGTATAAACAAAAACAATCATTTTATGACAAAACAAAAAGTCATAACA
Found at i:11290243 original size:25 final size:25
Alignment explanation
Indices: 11290204--11290251 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
11290194 TAATTTTTAG
11290204 TAATATTATCAATT-ATATAAATAAT
1 TAATATTATCAATTAAT-TAAATAAT
11290229 TAATATTAT-ATATTAATTAAATA
1 TAATATTATCA-ATTAATTAAATA
11290252 TAATACTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 1 0.05
25 18 0.86
26 2 0.10
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TAATATTATCAATTAATTAAATAAT
Found at i:11290266 original size:21 final size:17
Alignment explanation
Indices: 11290215--11290248 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
11290205 AATATTATCA
11290215 ATTATATAAATAATTAAT
1 ATTATAT-AATAATTAAT
*
11290233 ATTATATATTAATTAA
1 ATTATATAATAATTAA
11290249 ATATAATACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTATATAATAATTAAT
Found at i:11290378 original size:23 final size:23
Alignment explanation
Indices: 11290334--11290388 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
11290324 CAAATAAATT
11290334 TTAA-AATATTATAATTAATATAA
1 TTAATAATATTATAATTAATAT-A
*
11290357 TT-ATAATATTAATAA-TACTATA
1 TTAATAATATT-ATAATTAATATA
11290379 TTAATAATAT
1 TTAATAATAT
11290389 CATTATATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 4 0.14
23 20 0.71
24 4 0.14
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
TTAATAATATTATAATTAATATA
Found at i:11290418 original size:18 final size:16
Alignment explanation
Indices: 11290395--11290428 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
11290385 ATATCATTAT
11290395 ATTATTAACTATTTATAA
1 ATTATT-ACTA-TTATAA
11290413 ATTATTACTATTATAA
1 ATTATTACTATTATAA
11290429 TAGTTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 4 0.25
18 6 0.38
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTATTACTATTATAA
Found at i:11290505 original size:14 final size:14
Alignment explanation
Indices: 11290466--11290512 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 14
11290456 AATTTATTTT
11290466 ATAAATAATAATATTA
1 ATAAAT-ATAA-ATTA
11290482 TATAAAATATAAATTA
1 -AT-AAATATAAATTA
11290498 ATAAATATAAATTA
1 ATAAATATAAATTA
11290512 A
1 A
11290513 ATATTTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
14 13 0.45
15 2 0.07
16 4 0.14
17 6 0.21
18 4 0.14
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAAATATAAATTA
Found at i:11290514 original size:25 final size:24
Alignment explanation
Indices: 11290465--11290516 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
11290455 TAATTTATTT
*
11290465 TATAAATAATAATATTATATAAAA
1 TATAAATAATAATATTAAATAAAA
*
11290489 TATAAATTAATAA-ATATAAATTAAA
1 TATAAA-TAATAATAT-TAAATAAAA
11290514 TAT
1 TAT
11290517 TTTAATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
TATAAATAATAATATTAAATAAAA
Found at i:11290703 original size:30 final size:29
Alignment explanation
Indices: 11290669--11290732 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 29
11290659 ATATATTATA
*
11290669 AAATAATTATCT-TTATATTATTTTAATAAT
1 AAATAATTAT-TATTATATT-TATTAATAAT
*
11290699 AAATATTTATTATTATATTTATTAATAAT
1 AAATAATTATTATTATATTTATTAATAAT
11290728 AAATA
1 AAATA
11290733 GAAATTACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 15 0.48
30 16 0.52
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (29 bp):
AAATAATTATTATTATATTTATTAATAAT
Found at i:11290739 original size:29 final size:30
Alignment explanation
Indices: 11290681--11290739 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
11290671 ATAATTATCT
* ***
11290681 TTATATTATTTTAATAATAAATATTTATTA
1 TTATATTATATTAATAATAAATAGAAATTA
11290711 TTATATT-TATTAATAATAAATAGAAATTA
1 TTATATTATATTAATAATAAATAGAAATTA
11290740 CAATTATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (30 bp):
TTATATTATATTAATAATAAATAGAAATTA
Found at i:11291403 original size:177 final size:173
Alignment explanation
Indices: 11290797--11291407 Score: 481
Period size: 177 Copynumber: 3.4 Consensus size: 173
11290787 ATAATACTAC
* *
11290797 TTTATTAATATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATC-AGTTTACTAAATCAA
1 TTTATTAATATTTCAAAAA-T--T-AATAAGAGATTTAAAAAATAAATCTA-TTTAC-AAACCAG
* * * * * * * ** * *
11290861 TTCAAATAATCATGGCCAT-TTAAACAACTATCTATTTTAAATCATTATTACTTTTTGTTTTGTC
60 TTCAAATAATTAAGACTATATGAAA-AATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTC
* * * * * * ** *
11290925 ATAAAACAATTATTTTTCAACAAATAAGATTTTTCTTAATAAAATAATACTAA
124 ATAAAACAATTATTTTGC-TCATACAAGCTTATTCGGAAT-AAATAA-AATAA
* * ** * *
11290978 TTTATTAATATTTCAAGAATTAATAAGAGATTTTAAAAAAGAAATCTATTTGTTAATCCAATTCA
1 TTTATTAATATTTCAAAAATTAATAAGAGA-TTTAAAAAATAAATCTATTT-ACAAACCAGTTCA
* * * * * * * *
11291043 AATAGTTATGATTATTTGAACAATTATCTATTTCAAATTGTTATAACC-TTTGCTCTATCATAAA
64 AATAATTAAGACTATATGAAAAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAA
* * * * *
11291107 ATAATTGTTTCTGTTCATACAAGCTTATTTGGAATAAATTAATAATAG
129 ACAATTATTT-TGCTCATACAAGCTTATTCGGAATAAA-TAA-AATAA
* * * * * *
11291155 TTTAGTAATATTTTGAAAACGAATAACTATGAGATTTAAAAAATAAATCTGTTTGTCAAACCAGT
1 TTTATTAATA-TTTCAAAA--ATTAA-TAAGAGATTTAAAAAATAAATCTATTT-ACAAACCAGT
* *
11291220 TCAAATAATTAAGACTATATGAAAAATTATTTATTTCAACTTGTTATAACCTTTTGTTTTGTCAT
61 TCAAATAATTAAGACTATATGAAAAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCAT
* * *
11291285 AAAACAATTATTTAAGCTCATAGAAGCTTCTTCGGAATAGAATAAAATTAA
126 AAAACAATTATTT-TGCTCATACAAGCTTATTCGGAATA-AATAAAA-TAA
* * * *
11291336 TTTATTAATATTTCAAAAATTTATAAGAGATTTAGAAAATAATTCTACTTACGAAACCAGTTCAA
1 TTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTAC-AAACCAGTTCAA
11291401 ATAATTA
65 ATAATTA
11291408 TAACAATTTA
Statistics
Matches: 341, Mismatches: 75, Indels: 32
0.76 0.17 0.07
Matches are distributed among these distances:
176 4 0.01
177 100 0.29
178 68 0.20
179 4 0.01
180 84 0.25
181 79 0.23
182 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (173 bp):
TTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACAAACCAGTTCAAA
TAATTAAGACTATATGAAAAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAAC
AATTATTTTGCTCATACAAGCTTATTCGGAATAAATAAAATAA
Found at i:11292757 original size:315 final size:312
Alignment explanation
Indices: 11292198--11292766 Score: 714
Period size: 315 Copynumber: 1.8 Consensus size: 312
11292188 AATTAATAAG
* * * * *
11292198 TAAGAGATTTAAAAAATAAATTTGTTTATTGAGCCAGTTCAAATAGTTATGACTATTTGAATAAT
1 TAAGAGATTTAAAAAATAAATTTATTTACTGAGCCAGTTCAAATAATTATAACTATTTGAACAAT
* * *
11292263 TATTAATCTCAAATCATTAAGATATTTGTTTTGTCATAAAATAATTGTTTCTAATCATATAAACT
66 TATTAATCTCAAATCATTAAGATATTTGTTTTGTCATAAAACAATTGTTTCTAATAAGATAAACT
* *
11292328 TATTCTATTAAAAATAATAATAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAA
131 TATTCAAATAAAAATAATAATAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAA
* ** *
11292393 ATAAATATGTTTGCTGAGCCAGTTCAAATAGTTAAAACTATTAGAATAATTATATATTTTATTAA
196 ATAAATATGTTTACCAAACCAGTTCAAATAGTTAAAACTATTAGAATAATTATATATTTTATTAA
11292458 TAAAATAATACATTTACTATTAAAACTAATTTATTAATACTTTAAAAAATTA
261 TAAAATAATACATTTACTATTAAAACTAATTTATTAATACTTTAAAAAATTA
*
11292510 TAAGAGATTTAGAAAAT-AATTCTATTTACCT-AGCCAGTTCAAATAATTATAACTATTT-AAGC
1 TAAGAGATTTAAAAAATAAATT-TATTTA-CTGAGCCAGTTCAAATAATTATAACTATTTGAA-C
* * ** * * **
11292572 AATTATTTATTTCAAATCATTATTACTTTTTGTTTTTGTCATAAAACAATTGTTTTTGTTAAGAT
63 AATTATTAATCTCAAATCATTAAGA-TATTTG-TTTTGTCATAAAACAATTGTTTCTAATAAGAT
** * * * *
11292637 AAGTTTGTTCAAAATAAAAATAATACTAATTTATTAATA-TTTAGAAAATTAATTAGTAAGAGAT
126 AAACTTATTC-AAATAAAAATAATAATAATTTAATAATATTTTA-AAAATTAATAAGTAAGAGAT
* * * *** * *
11292701 TTAAAAAGTAAATTTGTTTACCAAACCATTTCAAATAGTTTTGACTATTTGAATAATTATCTATT
189 TTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAGTTAAAACTATTAGAATAATTATATATT
11292766 T
254 T
11292767 CAAATTGTTA
Statistics
Matches: 213, Mismatches: 37, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
311 6 0.03
312 67 0.31
313 6 0.03
314 37 0.17
315 97 0.46
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (312 bp):
TAAGAGATTTAAAAAATAAATTTATTTACTGAGCCAGTTCAAATAATTATAACTATTTGAACAAT
TATTAATCTCAAATCATTAAGATATTTGTTTTGTCATAAAACAATTGTTTCTAATAAGATAAACT
TATTCAAATAAAAATAATAATAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAA
ATAAATATGTTTACCAAACCAGTTCAAATAGTTAAAACTATTAGAATAATTATATATTTTATTAA
TAAAATAATACATTTACTATTAAAACTAATTTATTAATACTTTAAAAAATTA
Found at i:11292888 original size:181 final size:177
Alignment explanation
Indices: 11292653--11293210 Score: 562
Period size: 181 Copynumber: 3.1 Consensus size: 177
11292643 GTTCAAAATA
* * * *
11292653 AAAATAATACTAATTTATTAATATTTAGAAAATTAATTAGTAAGAGATTTAAAAAGTAAATTTGT
1 AAAATAATACTAATTTAATAATATTTA-AAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGT
* ** * *
11292718 TTACCAAACCATTTCAAATAGTTTTGACTATTTGAATAATTATCTATTTCAAATTGTTATAACCT
65 TT-CCAAACCAGTTCAAATAGTTAAGACTATTTGAATAATTATCTATTTAAAATTGTTATGACCT
* * * * **
11292783 TTTATTTTGTCATTAAACAATTGGTTCTGTTCATGCTATTTTATTTAGAAT
129 TTT-TTTTGTTATAAAACAATT-GTTCTGTTCATACAAGCTTATTTAGAAT
* * ** * **
11292834 AAAATAATATTAATTTAATAATATTTCAAAACTTAATAACCAAGAAAATTAAAAAATAAATCTAA
1 AAAATAATACTAATTTAATAATATTT-AAAAATTAATAAGTAAGAAATTTAAAAAATAAAT-TTG
** * * * * * * * *
11292899 TTGT-TGAACTAGTTAAAATAGTTACGACAATATGAATGATTATCTATTTTAAATCGTTATGACC
64 TT-TCCAAACCAGTTCAAATAGTTAAGACTATTTGAATAATTATCTATTTAAAATTGTTATGACC
* * * * *
11292963 TTTTCTTTTGTTGTAAAACAATTATTTTGTTCGTACAAGCTTATTCT-GATT
128 TTTT-TTTTGTTATAAAACAATTGTTCTGTTCATACAAGCTTATT-TAGAAT
*
11293014 AAAATAATACTAATTTAATAATATTTTAAAAATTAAGAAGTAAGAAATTTAAAAAATAAATTTGT
1 AAAATAATACTAATTTAATAATA-TTTAAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGT
* * * ** * *
11293079 TTGCAAATCAGTTCAAATGGTTAAGACTATTAAAACAATTATCTATTTAAAATTGTTCTGACCTT
65 TTCCAAACCAGTTCAAATAGTTAAGACTATTTGAATAATTATCTATTTAAAATTGTTATGACCTT
*
11293144 TTTTTTAGTTATAAAACAATTGTTCTAGTTCATACAAGCTTATTAAGAAT
130 TTTTTT-GTTATAAAACAATTGTTCT-GTTCATACAAGCTTATTTAGAAT
* *
11293194 AAATTAATAATAATTTA
1 AAAATAATACTAATTTA
11293211 TTAGCATTCA
Statistics
Matches: 300, Mismatches: 68, Indels: 19
0.78 0.18 0.05
Matches are distributed among these distances:
178 5 0.02
179 67 0.22
180 103 0.34
181 120 0.40
182 4 0.01
183 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.41
Consensus pattern (177 bp):
AAAATAATACTAATTTAATAATATTTAAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTT
TCCAAACCAGTTCAAATAGTTAAGACTATTTGAATAATTATCTATTTAAAATTGTTATGACCTTT
TTTTTGTTATAAAACAATTGTTCTGTTCATACAAGCTTATTTAGAAT
Found at i:11293069 original size:180 final size:181
Alignment explanation
Indices: 11292572--11293210 Score: 500
Period size: 181 Copynumber: 3.5 Consensus size: 181
11292562 CTATTTAAGC
* * * * * * * * * *
11292572 AATTATTTATTTCAAATCATTATTACTTTTTGTTTTTGTCATAAAACAATTGTTTTTGTTAAGAT
1 AATTATCTATTTCAAATCGTTATAACCTTTT-ATTTTGTCATAAAACAATTGATTCTGTTCATAC
* * * * * * *
11292637 AAGTTTGTTCAAAATAAAAATAATACTAATTTATTAATA-TTTAGAAAATTAATTAGTAAGAGAT
65 AAGCTTATTTAGAAT-AAAATAATACTAATTTAATAATATTTTA-AAAATTAATAAGTAAGAAAT
* * ** * * ** * *
11292701 TTAAAAAGTAAATTTGTTTACCAAACCATTTCAAATAGTTTTGACTATTTGAAT
128 TTAAAAAATAAATCTAATTACCAAACCAGTTAAAATAGTTACGACAATATGAAT
* * * * *
11292755 AATTATCTATTTCAAATTGTTATAACCTTTTATTTTGTCATTAAACAATTGGTTCTGTTCATGCT
1 AATTATCTATTTCAAATCGTTATAACCTTTTATTTTGTCATAAAACAATTGATTCTGTTCATACA
** * * * ** *
11292820 ATTTTATTTAGAATAAAATAATATTAATTTAATAATATTTCAAAACTTAATAACCAAGAAAATTA
66 AGCTTATTTAGAATAAAATAATACTAATTTAATAATATTTTAAAAATTAATAAGTAAGAAATTTA
**** *
11292885 AAAAATAAATCTAATTGTTGAACTAGTTAAAATAGTTACGACAATATGAAT
131 AAAAATAAATCTAATTACCAAACCAGTTAAAATAGTTACGACAATATGAAT
* * * * ** * *
11292936 GATTATCTATTTTAAATCGTTATGACCTTTTCTTTTGTTGTAAAACAATT-ATTTTGTTCGTACA
1 AATTATCTATTTCAAATCGTTATAACCTTTTATTTTGTCATAAAACAATTGATTCTGTTCATACA
* *
11293000 AGCTTATTCT-GATTAAAATAATACTAATTTAATAATATTTTAAAAATTAAGAAGTAAGAAATTT
66 AGCTTATT-TAGAATAAAATAATACTAATTTAATAATATTTTAAAAATTAATAAGTAAGAAATTT
** ** * * * * * * *
11293064 AAAAAATAAAT-TTGTTTGCAAATCAGTTCAAATGGTTAAGACTAT-TAAAAC
130 AAAAAATAAATCTAATTACCAAACCAGTTAAAATAGTTACGACAATAT-GAAT
* * * * *
11293115 AATTATCTATTTAAAATTGTTCTGACCTTTT-TTTTAGTTATAAAACAATTG-TTCTAGTTCATA
1 AATTATCTATTTCAAATCGTTATAACCTTTTATTTT-GTCATAAAACAATTGATTCT-GTTCATA
* * *
11293178 CAAGCTTATTAAGAATAAATTAATAATAATTTA
64 CAAGCTTATTTAGAATAAAATAATACTAATTTA
11293211 TTAGCATTCA
Statistics
Matches: 359, Mismatches: 90, Indels: 17
0.77 0.19 0.04
Matches are distributed among these distances:
178 5 0.01
179 67 0.19
180 106 0.30
181 117 0.33
182 38 0.11
183 26 0.07
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.42
Consensus pattern (181 bp):
AATTATCTATTTCAAATCGTTATAACCTTTTATTTTGTCATAAAACAATTGATTCTGTTCATACA
AGCTTATTTAGAATAAAATAATACTAATTTAATAATATTTTAAAAATTAATAAGTAAGAAATTTA
AAAAATAAATCTAATTACCAAACCAGTTAAAATAGTTACGACAATATGAAT
Found at i:11294142 original size:177 final size:176
Alignment explanation
Indices: 11293858--11294696 Score: 689
Period size: 177 Copynumber: 4.7 Consensus size: 176
11293848 GCATTTTTGG
* * * *
11293858 AATAAAATAAT-CTAAATTTACTAACA-TTCAAAAAATTAATAAGCAAAAGATTTGAAAAAATAA
1 AATAAAATAATACT-AATTTATTAATATTTC-AAAAATTAATAAACAAGAGATTT--AAAAATAA
* * * * * *
11293921 ATTCGTTTATTGAACAAATTTAAATAGTTATGAATATTTGAACAATCACATATTTAAAATCATTA
62 ATT--TTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTAC-TATTTAAAATCATTA
*
11293986 TGACCTTTTGTTTTGACATAAAATAATTGTTTTAGTTCATAAAAACTTATCCAA
124 TGACCTTTTGTTTTGACATAAAATAATTGTTTTA-TTCATAAAAACTTATTCAA
*
11294040 AATAAAATAATACTAATTTTTTAATATTTCAAAAATTAATAAACAAGAG-TTTAAAAA-AATATT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGAGATTTAAAAATAA-ATT
* * * * * * *
11294103 TTTACTGAACAAATTCAAATAGTTATGACTATTTGAACAATTGTCCATTGAAAATCGTTATGATC
65 TTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATT-ACTATTTAAAATCATTATGACC
* * * * * * **
11294168 TTTTGCTTTGTCACAAAACAATGGTTTTAGTTGATAAAAGTTTATTCAA
129 TTTTGTTTTGACATAAAATAATTGTTTTA-TTCATAAAAACTTATTCAA
* ** * *
11294217 AATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAATTAAGTGATTTAAAAAGTGAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGAGATTTAAAAA-TAAAT-
* * * * * * * * *
11294282 TGTTTACCATATC-GGTTCAAATAATTATGGCCATTTCAACAATTATCTATTTCAAATCATTATT
64 T-TTTACTA-AACAAGTTCAAATAGTTATGACTATTTGAACAATTA-CTATTTAAAATCATTATG
** * * * *
11294346 ATATTTTGTTTTGTCATATAACAATTATT-TTTTATT-AT-ACAAGTTAATTCAA
126 ACCTTTTGTTTTG--ACATAA-AATAATTGTTTTATTCATAAAAACTT-ATTCAA
*
11294398 AATAAAATAATACTAATTTATTAATCTTTCAAAAATTAAT----AAGAGATTTACAAAATAAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGAGATTTA-AAAATAAAT-
* ** * * * *
11294459 TGTTTACCAAATTAGTTTAAATAGTTATGACTATTTGAACAATTGTA-TACTTCAAATCATTATA
64 T-TTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAA-T-TACTATTTAAAATCATTATG
* * * * * *
11294523 ACCTTTTGTTTTGTCATAAAATAATTATTTCTACTCATATAAGCTTATTCGA
126 ACCTTTTGTTTTGACATAAAATAATTGTTT-TATTCATAAAAACTTATTCAA
* * *
11294575 AATAAAATAATACTAATATAATAATATTCCAAAAATTAAT-AACAAAGAGATTTAAAAACTAAAT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAC-AAGAGATTTAAAAA-TAAAT
* * * *
11294639 TTATCTACCAAACTAGTTCAAATAGTTAAGACTATATGAACAATTATCTATTTAAAAT
64 TT-T-TACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTA-CTATTTAAAAT
11294697 TTTTTTTTGC
Statistics
Matches: 535, Mismatches: 90, Indels: 65
0.78 0.13 0.09
Matches are distributed among these distances:
174 6 0.01
175 7 0.01
176 4 0.01
177 253 0.47
178 19 0.04
179 15 0.03
180 13 0.02
181 160 0.30
182 41 0.08
183 13 0.02
184 4 0.01
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.38
Consensus pattern (176 bp):
AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGAGATTTAAAAATAAATTT
TTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTACTATTTAAAATCATTATGACCTT
TTGTTTTGACATAAAATAATTGTTTTATTCATAAAAACTTATTCAA
Found at i:11294660 original size:358 final size:358
Alignment explanation
Indices: 11294037--11294696 Score: 812
Period size: 358 Copynumber: 1.8 Consensus size: 358
11294027 AAAACTTATC
*
11294037 CAAAATAAAATAATACTAATTTTTTAATATTTCAAAAATTAATAAACAAGAGTTTAAAAAAATAT
1 CAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGAGTTTAAAAAAATAT
** * * * *
11294102 TTTTACTGAACAAATTCAAATAGTTATGACTATTTGAACAATTGTCCATTGAAAATCGTTATGAT
66 TTTTACCAAACAAATTCAAATAGTTATGACTATTTGAACAATTGTACATTGAAAATCATTATAAC
* * * *
11294167 CTTTTGCTTTGTCACAAAACAATGGTTTTAGTTGATAAAAGTTTATTCAAAATAAAATAATACTA
131 CTTTTGCTTTGTCACAAAACAATGATTTTAGCTCATAAAAGCTTATTCAAAATAAAATAATACTA
* * ** * * * * * * *
11294232 ATTTATTAATATTCCAAAAATTAATAATTAAGTGATTTAAAAAGTGAATCTGTTTACCATATCGG
196 ATATAATAATATTCCAAAAATTAATAACAAAGAGATTTAAAAACTAAATCTATCTACCAAATCAG
* * * *
11294297 TTCAAATAATTATGGCCATTTCAACAATTATCTATTTCAAATCATTATTATATTTTGTTTTGTCA
261 TTCAAATAATTAAGACCATATCAACAATTATCTATTTAAAATCATTATTATATTTTGTTTTGTCA
11294362 TATAACAATTATTTTTTATTATACAAGTTAATT
326 TATAACAATTATTTTTTATTATACAAGTTAATT
* *
11294395 CAAAATAAAATAATACTAATTTATTAATCTTTCAAAAATTAAT-AA-GAGA-TTTACAAAATAA-
1 CAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGAGTTTA-AAAA-AAT
** * * * *
11294456 ATCTGTTTACCAAATTAGTTTAAATAGTTATGACTATTTGAACAATTGTATACTT-CAAATCATT
64 AT-T-TTTACCAAACAAATTCAAATAGTTATGACTATTTGAACAATTGTACA-TTGAAAATCATT
* * * * * *
11294520 ATAACCTTTTGTTTTGTCATAAAATAATTATTTCTA-CTCATATAAGCTTATTCGAAATAAAATA
126 ATAACCTTTTGCTTTGTCACAAAACAATGATTT-TAGCTCATAAAAGCTTATTCAAAATAAAATA
*
11294584 ATACTAATATAATAATATTCCAAAAATTAATAACAAAGAGATTTAAAAACTAAATTTATCTACCA
190 ATACTAATATAATAATATTCCAAAAATTAATAACAAAGAGATTTAAAAACTAAATCTATCTACCA
* * *
11294649 AA-CTAGTTCAAATAGTTAAGACTATATGAACAATTATCTATTTAAAAT
255 AATC-AGTTCAAATAATTAAGACCATATCAACAATTATCTATTTAAAAT
11294697 TTTTTTTTGC
Statistics
Matches: 251, Mismatches: 44, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
355 4 0.02
356 9 0.04
357 6 0.02
358 228 0.91
359 4 0.02
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (358 bp):
CAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAACAAGAGTTTAAAAAAATAT
TTTTACCAAACAAATTCAAATAGTTATGACTATTTGAACAATTGTACATTGAAAATCATTATAAC
CTTTTGCTTTGTCACAAAACAATGATTTTAGCTCATAAAAGCTTATTCAAAATAAAATAATACTA
ATATAATAATATTCCAAAAATTAATAACAAAGAGATTTAAAAACTAAATCTATCTACCAAATCAG
TTCAAATAATTAAGACCATATCAACAATTATCTATTTAAAATCATTATTATATTTTGTTTTGTCA
TATAACAATTATTTTTTATTATACAAGTTAATT
Found at i:11295172 original size:177 final size:175
Alignment explanation
Indices: 11294864--11295247 Score: 409
Period size: 177 Copynumber: 2.2 Consensus size: 175
11294854 TTCAAAAAGT
* * * * * * * **
11294864 AATTAATACGGGATTTAAAGACTAAATTTGTTTTCCAAAATAATTCAAATAGTTATGACTATTTG
1 AATTAATAAGAGATTTAAAAAATAAATGTGTTTGCCAAAATAATTCAAATAGTTAAGACTATTAA
* * *
11294929 AACAATTATCTATCTTAAAACATTATGATCTTTATTTTGTCATAAAACAATTTTTCCTTTTCATA
66 AACAATTATCTATCTTAAAACATTATAACCTTTATTTTGTCATAAAACAATTTTT-CTGTTCATA
* * * *
11294994 CAAACTTATTC-GTATTAAAATAATACTAATTTAATAATATTCCAAC
130 CAAACTTATTCAG-AATAAAATAATACTAATTTAATAACATTCAAAA
* *
11295040 AATTAATAAGAGATTTAAAAAAATAAATGTGTTTGCCAAACTAGTTCAAATAGTTAAGAC-ATTA
1 AATTAATAAGAGATTT-AAAAAATAAATGTGTTTGCCAAAATAATTCAAATAGTTAAGACTATTA
* * *
11295104 AAACAATTATCTAT-TTCAAATCATTCTAACCTTT-TGTTTAGTCATAAAATAATTATTT-TAGT
65 AAACAATTATCTATCTT-AAAACATTATAACCTTTAT-TTT-GTCATAAAACAATT-TTTCT-GT
* * *
11295166 TCATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAACATTTAAAA
125 TCATACAAACTTATTCAGAATAAAATAATACTAATTTAATAACATTCAAAA
11295217 AATTAATGAGTAAGAGATTTAAAAAATAAAT
1 AATT-A--A-TAAGAGATTTAAAAAATAAAT
11295248 CTATTTATCG
Statistics
Matches: 173, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
175 3 0.02
176 47 0.27
177 96 0.55
178 5 0.03
180 12 0.07
181 10 0.06
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.38
Consensus pattern (175 bp):
AATTAATAAGAGATTTAAAAAATAAATGTGTTTGCCAAAATAATTCAAATAGTTAAGACTATTAA
AACAATTATCTATCTTAAAACATTATAACCTTTATTTTGTCATAAAACAATTTTTCTGTTCATAC
AAACTTATTCAGAATAAAATAATACTAATTTAATAACATTCAAAA
Found at i:11295564 original size:23 final size:23
Alignment explanation
Indices: 11295522--11295574 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
11295512 TTATTGGATG
11295522 ATTATAT-TAATAATATATAATTT
1 ATTATATATAATAATATATAA-TT
11295545 ATTATATATAACT-ATA-ATAATT
1 ATTATATATAA-TAATATATAATT
*
11295567 ATTTTATA
1 ATTATATA
11295575 ATTATTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 9 0.33
23 11 0.41
24 6 0.22
25 1 0.04
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTATATATAATAATATATAATT
Found at i:11295623 original size:16 final size:16
Alignment explanation
Indices: 11295604--11295657 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
11295594 ATAATCAACT
11295604 ATTATAATATTATATA
1 ATTATAATATTATATA
* *
11295620 ATTATATTA-TAAATA
1 ATTATAATATTATATA
*
11295635 ATTAATATTATTAT-TA
1 ATT-ATAATATTATATA
11295651 A-TATAAT
1 ATTATAAT
11295658 TGTTATAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
14 4 0.12
15 9 0.28
16 17 0.53
17 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTATAATATTATATA
Found at i:11295626 original size:13 final size:15
Alignment explanation
Indices: 11295608--11295645 Score: 53
Period size: 13 Copynumber: 2.6 Consensus size: 15
11295598 TCAACTATTA
11295608 TAATATTAT-ATAAT
1 TAATATTATAATAAT
11295622 T-ATATTATAAATAAT
1 TAATATTAT-AATAAT
11295637 TAATATTAT
1 TAATATTAT
11295646 TATTAATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.33
14 1 0.05
15 6 0.29
16 7 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATATTATAATAAT
Found at i:11295656 original size:21 final size:20
Alignment explanation
Indices: 11295603--11295658 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
11295593 AATAATCAAC
*
11295603 TATTATAATATTATATAATTA
1 TATTATAATATAAT-TAATTA
11295624 TATTATAA-ATAATTAA-TA
1 TATTATAATATAATTAATTA
11295642 TTATTATTAATATAATT
1 -TATTA-TAATATAATT
11295659 GTTATAAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 2 0.06
19 8 0.26
20 7 0.23
21 14 0.45
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TATTATAATATAATTAATTA
Found at i:11295853 original size:34 final size:31
Alignment explanation
Indices: 11295815--11295877 Score: 81
Period size: 34 Copynumber: 1.9 Consensus size: 31
11295805 AAATAATTAT
11295815 GATAAAAAAATTATAACTAATTATTTAAATTAAA
1 GATAAAAAAATTA-AA-TAA-TATTTAAATTAAA
* *
11295849 GATAATAAAATTAAATAATATTTTAATTA
1 GATAAAAAAATTAAATAATATTTAAATTA
11295878 TTATAACTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 10 0.37
32 3 0.11
33 2 0.07
34 12 0.44
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (31 bp):
GATAAAAAAATTAAATAATATTTAAATTAAA
Found at i:11296035 original size:7 final size:7
Alignment explanation
Indices: 11296023--11296062 Score: 53
Period size: 7 Copynumber: 5.4 Consensus size: 7
11296013 AATTTATTTA
11296023 ATTAATT
1 ATTAATT
11296030 ATTAATT
1 ATTAATT
11296037 ATTAATT
1 ATTAATT
*
11296044 AATAATT
1 ATTAATT
11296051 ATATAGATT
1 AT-TA-ATT
11296060 ATT
1 ATT
11296063 CAACTATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 21 0.72
8 3 0.10
9 5 0.17
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (7 bp):
ATTAATT
Found at i:11297206 original size:13 final size:13
Alignment explanation
Indices: 11297188--11297212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11297178 ATAATAAAAA
11297188 TTAAATATTTAAT
1 TTAAATATTTAAT
11297201 TTAAATATTTAA
1 TTAAATATTTAA
11297213 AATTTAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTAAATATTTAAT
Found at i:11297207 original size:27 final size:29
Alignment explanation
Indices: 11297174--11297230 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
11297164 ATATCGATAA
11297174 TTAAATA-ATAAAAATT-AAATATTTAAT
1 TTAAATATATAAAAATTAAAATATTTAAT
* * *
11297201 TTAAATATTTAAAATTTAAAATTTTTAAT
1 TTAAATATATAAAAATTAAAATATTTAAT
11297230 T
1 T
11297231 ATTAACATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.28
28 7 0.28
29 11 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
TTAAATATATAAAAATTAAAATATTTAAT
Found at i:11297244 original size:23 final size:24
Alignment explanation
Indices: 11297200--11297244 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
11297190 AAATATTTAA
*
11297200 TTTAAATATTTAAAATTTAAAATT
1 TTTAAATATTTAAAATTCAAAATT
* *
11297224 TTTAATTA-TTAACATTCAAAA
1 TTTAAATATTTAAAATTCAAAA
11297245 ATTAATAAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
TTTAAATATTTAAAATTCAAAATT
Found at i:11297563 original size:181 final size:174
Alignment explanation
Indices: 11297229--11297634 Score: 466
Period size: 176 Copynumber: 2.3 Consensus size: 174
11297219 AAATTTTTAA
* * * * *
11297229 TTATTAACATT-CAAAAATTAATAAGC-AA-AGATATGAAAAAATAAATCTGTTTAC-AATC-AA
1 TTATTAATATTCCAAAAATTAATAA-CTAAGAGAT-TTAAAAAATTAATTTGTTTACTAAACAAA
* * * * *
11297289 GTTCAATAGTTATGACTATTTGAACAATTATTTATTTAAATCATTATGACCTTTTGTTTTGGCAA
64 TTTAAATAGCTACGACTATTTGAACAATTATCTATTTAAATCATTATGACCTTTTGTTTTGGCAA
* *
11297354 AAACAATTGTTTTAGTTCATAAAAGCTTATCCAAAATAAAATAATAGTAAT
129 AAACAATTATTTTAGTTCATAAAAGCTTATCCAAAAT---A-AA-ACTAAT
* *
11297405 TTCTTAATATTCCAAAAATTAATCAGC-AAGAG-TTTAAAAATATTAATTTGTTTACTAAACAAA
1 TTATTAATATTCCAAAAATTAAT-AACTAAGAGATTTAAAAA-ATTAATTTGTTTACTAAACAAA
* * * *
11297468 TTTAAATAGCTACGACTATTTGAACAATTGTCTATTTAAAATCGTTATGACTTTTTGTTTTGTCA
64 TTTAAATAGCTACGACTATTTGAACAATTATCTATTT-AAATCATTATGACCTTTTGTTTTGGCA
* *
11297533 TAAAACAATTATTTTAGTTCATACAAGCTTATTCAAAATAAAACTAAT
128 -AAAACAATTATTTTAGTTCATAAAAGCTTATCCAAAATAAAACTAAT
* *
11297581 TTATTAATATTCCAAAAATTAATAACTAAGTGATTTAAAAAGTTAATTTGTTTA
1 TTATTAATATTCCAAAAATTAATAACTAAGAGATTTAAAAAATTAATTTGTTTA
11297635 TTGAATCAGT
Statistics
Matches: 196, Mismatches: 24, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
175 2 0.01
176 58 0.30
177 37 0.19
178 7 0.04
179 33 0.17
180 24 0.12
181 35 0.18
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.39
Consensus pattern (174 bp):
TTATTAATATTCCAAAAATTAATAACTAAGAGATTTAAAAAATTAATTTGTTTACTAAACAAATT
TAAATAGCTACGACTATTTGAACAATTATCTATTTAAATCATTATGACCTTTTGTTTTGGCAAAA
ACAATTATTTTAGTTCATAAAAGCTTATCCAAAATAAAACTAAT
Found at i:11297698 original size:15 final size:17
Alignment explanation
Indices: 11297678--11297709 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
11297668 GTTTAAAGAA
11297678 ATTTGA-TA-TAATAAT
1 ATTTGATTATTAATAAT
11297693 ATTTGATTATTAATAAT
1 ATTTGATTATTAATAAT
11297710 TTATTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (17 bp):
ATTTGATTATTAATAAT
Found at i:11297711 original size:15 final size:15
Alignment explanation
Indices: 11297677--11297719 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
11297667 TGTTTAAAGA
11297677 AATTTGATATAATAAT
1 AATTTGAT-TAATAAT
*
11297693 -ATTTGATTATTAAT
1 AATTTGATTAATAAT
11297707 AATTT-ATTAATAA
1 AATTTGATTAATAA
11297720 ATATAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (15 bp):
AATTTGATTAATAAT
Found at i:11298601 original size:22 final size:24
Alignment explanation
Indices: 11298571--11298627 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
11298561 AGTTCAAATA
*
11298571 ATTA-TAACTATT-TAAT-TATAT
1 ATTATTAACTATTAAAATATATAT
11298592 ATTATTAACTATTAAAATAATATAT
1 ATTATTAACTATTAAAAT-ATATAT
11298617 ATTATT-ACTAT
1 ATTATTAACTAT
11298628 AATTGTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
21 4 0.13
22 8 0.26
23 3 0.10
24 5 0.16
25 11 0.35
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (24 bp):
ATTATTAACTATTAAAATATATAT
Found at i:11299956 original size:25 final size:27
Alignment explanation
Indices: 11299920--11299970 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
11299910 CATATCAATT
11299920 TTAATATGATA-TT-TAATAATTGTAA
1 TTAATATGATATTTCTAATAATTGTAA
11299945 TTAATTAT-ATATTTCTAATAATTGTA
1 TTAA-TATGATATTTCTAATAATTGTA
11299971 TAACTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 7 0.30
26 5 0.22
27 11 0.48
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (27 bp):
TTAATATGATATTTCTAATAATTGTAA
Found at i:11299992 original size:12 final size:12
Alignment explanation
Indices: 11299975--11300001 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
11299965 ATTGTATAAC
11299975 TATTATTATTAA
1 TATTATTATTAA
11299987 TATTATTATTAA
1 TATTATTATTAA
11299999 TAT
1 TAT
11300002 GTAAGATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATTATTAA
Found at i:11300392 original size:21 final size:21
Alignment explanation
Indices: 11300368--11300415 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
11300358 ATAATTGTTC
11300368 AATTATATAATTATTA-ATGAT
1 AATTATATAA-TATTACATGAT
* * *
11300389 AATTTTATTATATTACATTAT
1 AATTATATAATATTACATGAT
11300410 AATTAT
1 AATTAT
11300416 TTATTAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
AATTATATAATATTACATGAT
Found at i:11300523 original size:8 final size:8
Alignment explanation
Indices: 11300512--11300581 Score: 51
Period size: 8 Copynumber: 8.9 Consensus size: 8
11300502 TAAAAAATAA
11300512 TATTAATT
1 TATTAATT
11300520 TATTATATT
1 TATTA-ATT
*
11300529 TATAAATT
1 TATTAATT
11300537 ATATATAA-T
1 -TAT-TAATT
11300546 TATTAATT
1 TATTAATT
11300554 TA-TAATCT
1 TATTAAT-T
11300562 TA-TAA-T
1 TATTAATT
*
11300568 TA-TAATA
1 TATTAATT
11300575 TATTAAT
1 TATTAAT
11300582 AACAATGTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
6 6 0.12
7 9 0.17
8 24 0.46
9 11 0.21
10 2 0.04
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (8 bp):
TATTAATT
Found at i:11300532 original size:37 final size:35
Alignment explanation
Indices: 11300485--11300574 Score: 87
Period size: 37 Copynumber: 2.5 Consensus size: 35
11300475 ATTTTATATT
*
11300485 TTATAATTATAATTTAATAAAAAATAATATTAATTTA
1 TTATATTTATAATTTAATAAAAAAT--TATTAATTTA
* * *
11300522 TTATATTTATAAATT-ATATATAATTATTAATTTA
1 TTATATTTATAATTTAATAAAAAATTATTAATTTA
11300556 -TA-ATCTTATAATTATAATA
1 TTATAT-TTATAATT-TAATA
11300575 TATTAATAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
32 2 0.04
33 9 0.20
34 11 0.24
35 3 0.07
36 7 0.16
37 13 0.29
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (35 bp):
TTATATTTATAATTTAATAAAAAATTATTAATTTA
Found at i:11300540 original size:26 final size:25
Alignment explanation
Indices: 11300486--11300558 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 25
11300476 TTTTATATTT
*
11300486 TATAATTA-TAATTTAATAAAAAATAA
1 TATAATTATTAATTT-ATAAATAAT-A
*
11300512 TATTAATTTATTATATTTATAAATTATA
1 TA-TAA-TTATTA-ATTTATAAATAATA
11300540 TATAATTATTAATTTATAA
1 TATAATTATTAATTTATAA
11300559 TCTTATAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
25 8 0.20
26 8 0.20
27 6 0.15
28 6 0.15
29 9 0.22
30 4 0.10
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
TATAATTATTAATTTATAAATAATA
Found at i:11300565 original size:33 final size:33
Alignment explanation
Indices: 11300508--11300576 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 33
11300498 TTAATAAAAA
11300508 ATAATATTAATTTATTATATTTATAAATTAT-AT
1 ATAATATTAATTTATTATATTTAT-AATTATAAT
11300541 ATAATTATTAATTTA-TA-ATCTTATAATTATAAT
1 ATAA-TATTAATTTATTATAT-TTATAATTATAAT
11300574 ATA
1 ATA
11300577 TTAATAACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
32 8 0.24
33 15 0.45
34 10 0.30
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (33 bp):
ATAATATTAATTTATTATATTTATAATTATAAT
Found at i:11300819 original size:11 final size:10
Alignment explanation
Indices: 11300793--11300845 Score: 53
Period size: 9 Copynumber: 5.6 Consensus size: 10
11300783 TTTATTAATT
11300793 ATTAATA-TA
1 ATTAATATTA
11300802 ATTAATATTA
1 ATTAATATTA
11300812 AGTTAATATTA
1 A-TTAATATTA
11300823 A--AAT-TTAA
1 ATTAATATT-A
11300831 ATTAAT-TTA
1 ATTAATATTA
11300840 ATTAAT
1 ATTAAT
11300846 TCAAAGAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 2 0.05
8 5 0.13
9 14 0.36
10 8 0.21
11 10 0.26
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (10 bp):
ATTAATATTA
Found at i:11300929 original size:16 final size:17
Alignment explanation
Indices: 11300878--11300927 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 17
11300868 AAATAATGAT
* *
11300878 AATTAA-TTAAAGATTC
1 AATTAATTTAAATATTA
**
11300894 AATTAATTTATCT-TTA
1 AATTAATTTAAATATTA
11300910 AATTAATTTAAATATTA
1 AATTAATTTAAATATTA
11300927 A
1 A
11300928 TTGCATATAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
16 19 0.73
17 7 0.27
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (17 bp):
AATTAATTTAAATATTA
Found at i:11301206 original size:12 final size:11
Alignment explanation
Indices: 11301169--11301421 Score: 54
Period size: 10 Copynumber: 22.9 Consensus size: 11
11301159 TATATACATT
11301169 ATTAT-TTA-A
1 ATTATATTATA
11301178 ATTATATTATA
1 ATTATATTATA
*
11301189 ACTTATATTATCC
1 A-TTATATTAT-A
11301202 ATTATA--ATA
1 ATTATATTATA
11301211 ATTATA-T-TA
1 ATTATATTATA
*
11301220 ATTAT-TAATA
1 ATTATATTATA
* *
11301230 CTTA-GTTA-A
1 ATTATATTATA
*
11301239 ATGAT-TTA-A
1 ATTATATTATA
*
11301248 TATTATAATATAA
1 -ATTATATTAT-A
*
11301261 ATTATTATAATA
1 ATTA-TATTATA
*
11301273 ATTA-GTTATA
1 ATTATATTATA
11301283 ATATATATT-TA
1 AT-TATATTATA
*
11301294 ATATATATTAAA
1 AT-TATATTATA
*
11301306 ATTTTATATATA
1 ATTATAT-TATA
11301318 ATTTACTTATTATA
1 A-TTA--TATTATA
11301332 TATTA-A-TATAA
1 -ATTATATTAT-A
* *
11301343 ATAAAATTATA
1 ATTATATTATA
*
11301354 ATTTTATAATATAA
1 A--TTATATTAT-A
* * *
11301368 ATTAAATCATT
1 ATTATATTATA
*
11301379 ATTAT-TTATT
1 ATTATATTATA
*
11301389 ATTATAATATA
1 ATTATATTATA
*
11301400 A-TATAATATA
1 ATTATATTATA
11301410 ATATAATATTAT
1 AT-T-ATATTAT
11301422 TGTTTGTTAT
Statistics
Matches: 181, Mismatches: 31, Indels: 60
0.67 0.11 0.22
Matches are distributed among these distances:
9 25 0.14
10 47 0.26
11 34 0.19
12 42 0.23
13 20 0.11
14 9 0.05
15 4 0.02
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (11 bp):
ATTATATTATA
Found at i:11301380 original size:28 final size:28
Alignment explanation
Indices: 11301235--11301385 Score: 90
Period size: 28 Copynumber: 5.6 Consensus size: 28
11301225 TAATACTTAG
* *
11301235 TTAAATGATT-TAATATTATAATATAAA
1 TTAAATTATTATAATTTTATAATATAAA
* *
11301262 TT--ATTATAATAATTAGTTATAATATATAT
1 TTAAATTATTATAATT--TTATAATATA-AA
*
11301291 TTAATATATATTAAAATTTTAT-ATAT-AA
1 TTAA-AT-TATTATAATTTTATAATATAAA
* * *
11301319 TTTACTTATTAT-A-TAT-TAATATAAA
1 TTAAATTATTATAATTTTATAATATAAA
11301344 -TAAA--ATTATAATTTTATAATATAAA
1 TTAAATTATTATAATTTTATAATATAAA
* *
11301369 TTAAATCATTATTATTT
1 TTAAATTATTATAATTT
11301386 ATTATTATAA
Statistics
Matches: 93, Mismatches: 15, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
22 5 0.05
23 2 0.02
24 10 0.11
25 16 0.17
26 13 0.14
27 3 0.03
28 23 0.25
29 3 0.03
30 4 0.04
31 4 0.04
32 2 0.02
33 8 0.09
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (28 bp):
TTAAATTATTATAATTTTATAATATAAA
Found at i:11301394 original size:28 final size:25
Alignment explanation
Indices: 11301324--11301400 Score: 75
Period size: 28 Copynumber: 2.9 Consensus size: 25
11301314 TATAATTTAC
*
11301324 TTATTATATATTAATATAAATAAAA
1 TTATTATTTATTAATATAAATAAAA
*
11301349 TTATAATTT-TATAATATAAATTAAATCA
1 TTATTATTTAT-TAATATAAA-TAAA--A
*
11301377 TTATTATTTATTATTATAATATAA
1 TTATTATTTATTAATATAA-ATAA
11301401 TATAATATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
24 1 0.02
25 16 0.38
26 4 0.10
28 19 0.45
29 2 0.05
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (25 bp):
TTATTATTTATTAATATAAATAAAA
Found at i:11301401 original size:5 final size:5
Alignment explanation
Indices: 11301391--11301418 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
11301381 TATTTATTAT
11301391 TATAA TATAA TATAA TATAA TATAA TAT
1 TATAA TATAA TATAA TATAA TATAA TAT
11301419 TATTGTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:11302361 original size:20 final size:21
Alignment explanation
Indices: 11302338--11302377 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
11302328 ATAATATATA
11302338 TTAAAAATAATA-TATATAAC
1 TTAAAAATAATATTATATAAC
* *
11302358 TTAATAATATTATTATATAA
1 TTAAAAATAATATTATATAA
11302378 ATAATTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
TTAAAAATAATATTATATAAC
Found at i:11302405 original size:12 final size:12
Alignment explanation
Indices: 11302345--11302411 Score: 52
Period size: 12 Copynumber: 5.7 Consensus size: 12
11302335 ATATTAAAAA
11302345 TAATATATATAACT
1 TAAT-TATATAA-T
11302359 TAA-TA-AT-AT
1 TAATTATATAAT
*
11302368 T-ATTATATAAA
1 TAATTATATAAT
* *
11302379 TAATTATTTATT
1 TAATTATATAAT
11302391 TAATTATATAAT
1 TAATTATATAAT
11302403 TAAATTATA
1 T-AATTATA
11302412 GTTAAAATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
8 1 0.02
9 4 0.10
10 3 0.07
11 4 0.10
12 20 0.48
13 7 0.17
14 3 0.07
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATTATATAAT
Found at i:11302537 original size:21 final size:22
Alignment explanation
Indices: 11302513--11302568 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
11302503 TTATTATAAC
11302513 ATAATAATTATAGTT-AATGAT
1 ATAATAATTATAGTTAAATGAT
* *
11302534 ATAATAATTTGTATTTAAATGAT
1 ATAATAA-TTATAGTTAAATGAT
11302557 -TAATTAATTATA
1 ATAA-TAATTATA
11302569 CTGATTAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 7 0.24
22 13 0.45
23 9 0.31
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (22 bp):
ATAATAATTATAGTTAAATGAT
Found at i:11302690 original size:17 final size:17
Alignment explanation
Indices: 11302668--11302704 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
11302658 ATTAACCATA
11302668 ATATTATTTAAAATTAT
1 ATATTATTTAAAATTAT
* *
11302685 ATATTATTTTATATTAT
1 ATATTATTTAAAATTAT
11302702 ATA
1 ATA
11302705 ACCATATCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATATTATTTAAAATTAT
Found at i:11302952 original size:29 final size:25
Alignment explanation
Indices: 11302891--11302960 Score: 94
Period size: 26 Copynumber: 2.9 Consensus size: 25
11302881 TAAACTACTA
11302891 ATATGATTATAATATAAAATAATATT
1 ATAT-ATTATAATATAAAATAATATT
11302917 ATATATTATAATATATAAATAATATT
1 ATATATTATAATATA-AAATAATATT
11302943 AT-TATT-T-AT-TAAAATAAT
1 ATATATTATAATATAAAATAAT
11302961 TATAATTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.16
22 2 0.05
23 2 0.05
24 1 0.02
25 15 0.35
26 16 0.37
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (25 bp):
ATATATTATAATATAAAATAATATT
Found at i:11302968 original size:19 final size:18
Alignment explanation
Indices: 11302919--11302976 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
11302909 ATAATATTAT
* *
11302919 ATATTATAATATATAAATA
1 ATATTATAATTTATTAA-A
*
11302938 ATATTATTATTTATTAAA
1 ATATTATAATTTATTAAA
*
11302956 ATAATTATAATTTAATAAA
1 AT-ATTATAATTTATTAAA
11302975 AT
1 AT
11302977 TAAATCGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
18 3 0.09
19 30 0.91
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATTATAATTTATTAAA
Found at i:11303141 original size:24 final size:22
Alignment explanation
Indices: 11303106--11303150 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
11303096 TAAAATAAAC
11303106 ATTAAATAAATATAT-AATTAAT
1 ATTAAATAAATA-ATCAATTAAT
11303128 ATTAAATTAGAATAATCAATTAA
1 ATTAAA-TA-AATAATCAATTAA
11303151 GTCATGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 4 0.20
24 10 0.50
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
ATTAAATAAATAATCAATTAAT
Found at i:11303498 original size:15 final size:15
Alignment explanation
Indices: 11303478--11303531 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
11303468 ATTTAACAAT
11303478 TTAATATATTTAATA
1 TTAATATATTTAATA
*
11303493 TTAATATAATTAATA
1 TTAATATATTTAATA
*
11303508 TT-ATATTTTTTAATA
1 TTAATA-TATTTAATA
11303523 -TAATA-ATTT
1 TTAATATATTT
11303532 TAAATAATCA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 3 0.09
14 4 0.12
15 26 0.79
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTAATATATTTAATA
Found at i:11303617 original size:19 final size:19
Alignment explanation
Indices: 11303558--11303620 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
11303548 TATCTTATAT
* * *
11303558 TTAATTATAACTAATTTAC
1 TTAAATATAATTAATTTAA
*
11303577 TTAAAGTATTATTTAA-TT-A
1 TTAAA-TA-TAATTAATTTAA
11303596 TTAAATATAATTAATTTAA
1 TTAAATATAATTAATTTAA
11303615 TTAAAT
1 TTAAAT
11303621 TCAATATTCT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
17 6 0.17
18 4 0.11
19 16 0.46
20 4 0.11
21 5 0.14
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (19 bp):
TTAAATATAATTAATTTAA
Found at i:11303713 original size:15 final size:16
Alignment explanation
Indices: 11303695--11303734 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
11303685 TCTTAATCCT
11303695 TATTTAATTAA-TAAA
1 TATTTAATTAACTAAA
*
11303710 TATTTAATTAACTATA
1 TATTTAATTAACTAAA
11303726 TATATTAAT
1 TAT-TTAAT
11303735 AAATTATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.50
16 6 0.27
17 5 0.23
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTAATTAACTAAA
Found at i:11303743 original size:24 final size:24
Alignment explanation
Indices: 11303700--11303795 Score: 72
Period size: 24 Copynumber: 3.9 Consensus size: 24
11303690 ATCCTTATTT
* *
11303700 AATTAATAAATATTTAATTAACTATA
1 AATTATTAAATAATT-ATTAA-TATA
*
11303726 TA-TATT-AATAAATTATTAATATA
1 AATTATTAAAT-AATTATTAATATA
* *
11303749 AATTATTAAATAATTATT-TTTTA
1 AATTATTAAATAATTATTAATATA
*
11303772 AATAATTTAAATAAATTATTAATA
1 AATTA-TTAAAT-AATTATTAATA
11303796 AATATAAGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
23 12 0.22
24 25 0.45
25 16 0.29
26 2 0.04
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (24 bp):
AATTATTAAATAATTATTAATATA
Found at i:11303747 original size:21 final size:21
Alignment explanation
Indices: 11303723--11303764 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
11303713 TTAATTAACT
* *
11303723 ATATATATTAATAAATTATTA
1 ATATAAATTAATAAATAATTA
*
11303744 ATATAAATTATTAAATAATTA
1 ATATAAATTAATAAATAATTA
11303765 TTTTTTAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATAAATTAATAAATAATTA
Found at i:11303749 original size:13 final size:13
Alignment explanation
Indices: 11303733--11303795 Score: 62
Period size: 13 Copynumber: 5.1 Consensus size: 13
11303723 ATATATATTA
11303733 ATAAATTATTAAT
1 ATAAATTATTAAT
11303746 ATAAATTATTAA-
1 ATAAATTATTAAT
*
11303758 AT-AATTATT-TT
1 ATAAATTATTAAT
* *
11303769 TTAAATAATTTAA-
1 ATAAATTA-TTAAT
11303782 ATAAATTATTAAT
1 ATAAATTATTAAT
11303795 A
1 A
11303796 AATATAAGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
11 8 0.21
12 10 0.26
13 21 0.54
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATAAATTATTAAT
Found at i:11303797 original size:11 final size:11
Alignment explanation
Indices: 11303728--11303798 Score: 54
Period size: 11 Copynumber: 6.0 Consensus size: 11
11303718 TAACTATATA
11303728 TATTAATAAAT
1 TATTAATAAAT
11303739 TATTAATATAAAT
1 TATT-A-ATAAAT
11303752 TATTAA-ATAAT
1 TATTAATA-AAT
**
11303763 TATTTTTTAAAT
1 TA-TTAATAAAT
*
11303775 AATTTAAATAAAT
1 TA-TT-AATAAAT
11303788 TATTAATAAAT
1 TATTAATAAAT
11303799 ATAAGTTATT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
10 1 0.02
11 17 0.35
12 13 0.27
13 17 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TATTAATAAAT
Found at i:11303797 original size:24 final size:25
Alignment explanation
Indices: 11303727--11303799 Score: 73
Period size: 24 Copynumber: 3.0 Consensus size: 25
11303717 TTAACTATAT
11303727 ATATT-AATAAATTATTAATATAA-A
1 ATATTAAATAAATTATTAATA-AATA
* **
11303751 TTATTAAAT-AATTATTTTTTAAATA
1 ATATTAAATAAATTA-TTAATAAATA
11303776 AT-TTAAATAAATTATTAATAAATA
1 ATATTAAATAAATTATTAATAAATA
11303800 TAAGTTATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
24 25 0.64
25 14 0.36
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
ATATTAAATAAATTATTAATAAATA
Found at i:11304021 original size:14 final size:13
Alignment explanation
Indices: 11303996--11304026 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
11303986 AATTAATTTA
11303996 ATTAAATATTAAT
1 ATTAAATATTAAT
11304009 ATTAAATTATTAAT
1 ATTAAA-TATTAAT
11304023 ATTA
1 ATTA
11304027 CTAATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAAATATTAAT
Found at i:11304023 original size:20 final size:19
Alignment explanation
Indices: 11303987--11304052 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 19
11303977 AAATATTTTA
11303987 ATTAAT-TT-AATTA-AAT
1 ATTAATATTAAATTATAAT
11304003 ATTAATATTAAATTATTAAT
1 ATTAATATTAAATTA-TAAT
* *
11304023 ATTACTAATAAATTATAAT
1 ATTAATATTAAATTATAAT
*
11304042 TTTAATTATTA
1 ATTAA-TATTA
11304053 TTAATTATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
16 6 0.15
17 2 0.05
18 5 0.12
19 7 0.17
20 20 0.50
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTAATATTAAATTATAAT
Found at i:11304686 original size:181 final size:181
Alignment explanation
Indices: 11304364--11304702 Score: 455
Period size: 181 Copynumber: 1.9 Consensus size: 181
11304354 TTTTTAAATC
* *
11304364 ACTTATTAATTTTCAAAATATTAATAAATCAAAATTATTTTATTTTGAATAATTCTATATGAACA
1 ACTTATTAATTTGCAAAATATTAATAAATCAAAATTATTTTATTTTGAATAACTCTATATGAACA
* * * * * **
11304429 GAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCTAATGG
66 GAAACAATTATTTTATGACAAAACAAAAGATCATAACAATTAGAAATAAAAAATTGTTCAAACAG
* **
11304494 ACATGACTATTTGAACTTGTTCGGTAAACAGATTTATTTTTTAAATCTTCT
131 ACATAACTATTTGAACTTACTCGGTAAACAGATTTATTTTTTAAATCTTCT
* ** * *
11304545 ACTTATTAATTTGCAAAATATTAATAAATTAGTATTATTTTATTTTGAATAAACT-TGTATGAAT
1 ACTTATTAATTTGCAAAATATTAATAAATCAAAATTATTTTATTTTGAAT-AACTCTATATGAAC
* * *
11304609 AGAAACAATTGTTTTATGATAAAACAAAAGATCATAACTATTAGAAATAAAAAATTGTTCAAACA
65 AGAAACAATTATTTTATGACAAAACAAAAGATCATAACAATTAGAAATAAAAAATTGTTCAAACA
** *
11304674 GTTATAACTATTTGAGCTTACTCGGTAAA
130 GACATAACTATTTGAACTTACTCGGTAAA
11304703 TAATAGTAAA
Statistics
Matches: 134, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
181 131 0.98
182 3 0.02
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.39
Consensus pattern (181 bp):
ACTTATTAATTTGCAAAATATTAATAAATCAAAATTATTTTATTTTGAATAACTCTATATGAACA
GAAACAATTATTTTATGACAAAACAAAAGATCATAACAATTAGAAATAAAAAATTGTTCAAACAG
ACATAACTATTTGAACTTACTCGGTAAACAGATTTATTTTTTAAATCTTCT
Found at i:11305203 original size:22 final size:21
Alignment explanation
Indices: 11305155--11305224 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 21
11305145 TACCTAATAA
* *
11305155 TAATATTAATATTATTATAACT
1 TAATATTCATATTATTATTA-T
*
11305177 AAATATTCATATTATTTATTAT
1 TAATATTCATATTA-TTATTAT
11305199 TAATA-TCAATATTAATTATTAT
1 TAATATTC-ATATT-ATTATTAT
11305221 TAAT
1 TAAT
11305225 TAATTCTATA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
21 2 0.05
22 33 0.80
23 6 0.15
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATATTCATATTATTATTAT
Found at i:11305235 original size:25 final size:26
Alignment explanation
Indices: 11305156--11305245 Score: 77
Period size: 26 Copynumber: 3.6 Consensus size: 26
11305146 ACCTAATAAT
11305156 AATATTAA-TA-TTATTA-TAACTA--
1 AATATTAATTATTTATTATTAA-TATC
11305178 AATATTCATATTATTTATTATTAATATC
1 AATATT-A-ATTATTTATTATTAATATC
11305206 AATATTAATTA-TTATTAATTAAT-TC
1 AATATTAATTATTTATT-ATTAATATC
* *
11305231 TATATTAATAATTTA
1 AATATTAATTATTTA
11305246 ATTAAATTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
22 6 0.11
23 1 0.02
24 1 0.02
25 18 0.32
26 21 0.37
27 4 0.07
28 6 0.11
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (26 bp):
AATATTAATTATTTATTATTAATATC
Found at i:11306575 original size:181 final size:181
Alignment explanation
Indices: 11306013--11306742 Score: 583
Period size: 181 Copynumber: 4.1 Consensus size: 181
11306003 TTTTGAATGC
* * * * *
11306013 TAATAAATTATTATTAATTTATTCTAAATAAGCTTA-TATGAACTAG-AACAATTGTTTTATAAC
1 TAATAAATTAGTATTATTTTATTCTAAATAA-ATTAGCATGAAC-AGAAACAATTGTTTTATGAC
* * * * * ** * * *
11306076 TAAACAAAAGGTCAGAACAATTTTAAATAGATAATTGTTTTAATAGTCTTAACCATTTGAACTGA
64 AAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGG
* * * * *
11306141 TT-TGTAAACAAATTT-TTTTTTTAATTTCTTACTTATTAATTTTTAAAATAT
129 TTCGGTAAACAAATTTATTTTTTAAATCTCTTACTAATTAATTTCTAAAATAT
* * * * * * * *
11306192 TATTAAATTAGTATTATTTTAATCAAAATAAGCTT-GTACGAACA-AAATAATTGTTTTACGACA
1 TAATAAATTAGTATTATTTTATTCTAAATAA-ATTAGCATGAACAGAAACAATTGTTTTATGACA
* * * * * ** *
11306255 AAAGAAAAAGGTTATAACGATTTAAAATAGATAATCATTCATATCA-TTGTAACTATTTTAACTG
65 AAA-CAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAAT-AGTCATAACTATTTGAACTG
** ** * * * ** * *
11306319 GTTCAATAATTAGATTTATTTTTTAATTTTCTTGGTTATTAAGTTTC-AGAATAT
128 GTTCGGTAAACAAATTTATTTTTTAAATCTCTTACTAATTAA-TTTCTAAAATAT
* * * * *
11306373 TATTAAATTAATATTATTTTATTCTAAATAAAATAGCATGAACAGAACCAATTGTTTAATGACAA
1 TAATAAATTAGTATTATTTTATTCTAAATAAATTAGCATGAACAGAAACAATTGTTTTATGACAA
* * * *
11306438 AATAAAAGGTTATAACAATTTGAAAGAGATAATTATTCAAATAGTCAAAACTATTTGAAATGGTT
66 AACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGGTT
* *
11306503 TGGTAAACAAATTTACTTTTTAAATCTCTTACTAATTAATATTCT-AAATAT
131 CGGTAAACAAATTTATTTTTTAAATCTCTTACTAATTAAT-TTCTAAAATAT
** * * *
11306554 TAATAAATTAGTATTATTTTATT-TTGATCAAACTTATC-TTAACAAAAACAATTGTTTTATGAC
1 TAATAAATTAGTATTATTTTATTCTAAAT-AAA-TTAGCATGAACAGAAACAATTGTTTTATGAC
* * ** * * * *
11306617 AAAACAAAAAGTAATAATGATTTGAAATAAATAATTGTTCAAATAGTTATAATTATTTGAACTGG
64 AAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGG
* * * *
11306682 TTCGGTAAATAGAA-TTATTTTCTAAATCTCTTA-TAATT--TTT-TGAAGTAT
129 TTCGGTAAACA-AATTTATTTTTTAAATCTCTTACTAATTAATTTCTAAAATAT
11306731 TAATAAATTAGT
1 TAATAAATTAGT
11306743 TTTAATAGTA
Statistics
Matches: 437, Mismatches: 98, Indels: 34
0.77 0.17 0.06
Matches are distributed among these distances:
176 1 0.00
177 19 0.04
178 19 0.04
179 82 0.19
180 20 0.05
181 270 0.62
182 26 0.06
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (181 bp):
TAATAAATTAGTATTATTTTATTCTAAATAAATTAGCATGAACAGAAACAATTGTTTTATGACAA
AACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGGTT
CGGTAAACAAATTTATTTTTTAAATCTCTTACTAATTAATTTCTAAAATAT
Found at i:11306989 original size:20 final size:20
Alignment explanation
Indices: 11306960--11307002 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
11306950 ATATTTTAAA
*
11306960 TTATTATTAAATATTAAATAT
1 TTATTATTAAACATTAAAT-T
11306981 TTATT-TTAAACATTAAATT
1 TTATTATTAAACATTAAATT
11307000 TTA
1 TTA
11307003 ATAATTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 12 0.57
21 5 0.24
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATTATTAAACATTAAATT
Found at i:11307000 original size:18 final size:19
Alignment explanation
Indices: 11306955--11307000 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
11306945 AATTAATATT
*
11306955 TTAAA-TTATTATTAAATA
1 TTAAATTTATTATTAAACA
11306973 TTAAATATTTATT-TTAAACA
1 TT-AA-ATTTATTATTAAACA
11306993 TTAAATTT
1 TTAAATTT
11307001 TAATAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 6 0.25
19 4 0.17
20 9 0.38
21 5 0.21
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TTAAATTTATTATTAAACA
Found at i:11307041 original size:13 final size:13
Alignment explanation
Indices: 11307000--11307042 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
11306990 ACATTAAATT
*
11307000 TTAATAATTATAA
1 TTAATAATTATTA
11307013 TTAATAATTATCTTA
1 TTAATAATTA--TTA
*
11307028 TTAATAGTTATTA
1 TTAATAATTATTA
11307041 TT
1 TT
11307043 TAAAGTAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 15 0.58
15 11 0.42
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (13 bp):
TTAATAATTATTA
Found at i:11307356 original size:19 final size:20
Alignment explanation
Indices: 11307320--11307361 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
11307310 AAATAGATTT
* * *
11307320 ATTTTTTAAATCTCTAATTA
1 ATTTTTGAAATATCTAATAA
11307340 ATTTTTGAAATAT-TAATAA
1 ATTTTTGAAATATCTAATAA
11307359 ATT
1 ATT
11307362 AGTATTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTTTTGAAATATCTAATAA
Found at i:11307956 original size:158 final size:154
Alignment explanation
Indices: 11307656--11307943 Score: 355
Period size: 158 Copynumber: 1.9 Consensus size: 154
11307646 TTAAGATTAG
* * * * *
11307656 AAAAAATAAATTTGTTTACCAAACAAGTTTAAAAAGTTATGATTATTTGATCAGTTATTTTTATA
1 AAAAAATAAATTTGTTTACCAAACAAATTCAAAAAGTTATGACTATTTGAACAGTTATTATTATA
* *
11307721 AAATCGTTATGACCTTTTGTTTTGACATAAAATGATTGCTTCAATTCATAAAAGCTTATCCAAAA
66 AAATCATTATGA----TTGTTTTGACATAAAATAATTGCTTCAATTCATAAAAGCTTATCCAAAA
11307786 TAAAAAGAATTTAATAAGCAGGAGTTTA
127 TAAAAAGAATTTAATAAGCAGGAGTTTA
** * * *
11307814 AAAAAATAAATTTGTTTATTAAGCAAATTCAAATAGTTATGACTATTTGAACAGTTGTCTATT-T
1 AAAAAATAAATTTGTTTACCAAACAAATTCAAAAAGTTATGACTATTTGAACAGTTAT-TATTAT
* * * * * *
11307878 AAAATCATTATGA-TGTTTTGTCATAAAATAATTGTTTCAGTTCATACATGCTTATTCAAAATAA
65 AAAATCATTATGATTGTTTTGACATAAAATAATTGCTTCAATTCATAAAAGCTTATCCAAAATAA
11307942 AA
130 AA
11307944 TAATTCTAAT
Statistics
Matches: 111, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
153 46 0.41
158 62 0.56
159 3 0.03
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (154 bp):
AAAAAATAAATTTGTTTACCAAACAAATTCAAAAAGTTATGACTATTTGAACAGTTATTATTATA
AAATCATTATGATTGTTTTGACATAAAATAATTGCTTCAATTCATAAAAGCTTATCCAAAATAAA
AAGAATTTAATAAGCAGGAGTTTA
Found at i:11308991 original size:21 final size:21
Alignment explanation
Indices: 11308967--11309014 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
11308957 ATTAATGATT
*
11308967 ATAATCTATTCATA-TTTAACA
1 ATAATATATT-ATATTTTAACA
*
11308988 ATAAATATATTATATTTTAATA
1 AT-AATATATTATATTTTAACA
11309010 ATAAT
1 ATAAT
11309015 TATAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (21 bp):
ATAATATATTATATTTTAACA
Found at i:11308998 original size:22 final size:22
Alignment explanation
Indices: 11308973--11309018 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
11308963 GATTATAATC
11308973 TATTCATA-TTTAACAATAAATA
1 TATT-ATATTTTAACAATAAATA
* *
11308995 TATTATATTTTAATAATAATTA
1 TATTATATTTTAACAATAAATA
11309017 TA
1 TA
11309019 ATAAATTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TATTATATTTTAACAATAAATA
Found at i:11309036 original size:18 final size:19
Alignment explanation
Indices: 11309013--11309056 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
11309003 TTTAATAATA
* *
11309013 ATTATAATAAATT-GTATT
1 ATTATAATAAATTAATACT
11309031 ATTAT-ATAAATTAATACT
1 ATTATAATAAATTAATACT
11309049 ATTATAAT
1 ATTATAAT
11309057 TATAGTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 7 0.32
18 13 0.59
19 2 0.09
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
ATTATAATAAATTAATACT
Found at i:11310058 original size:20 final size:20
Alignment explanation
Indices: 11310035--11310073 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
11310025 ATTTATTATA
11310035 TATAAATA-TAATAATAATTT
1 TATAAATATTAA-AATAATTT
*
11310055 TATAATTATTAAAATAATT
1 TATAAATATTAAAATAATT
11310074 ATAATATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TATAAATATTAAAATAATTT
Found at i:11310058 original size:22 final size:24
Alignment explanation
Indices: 11309997--11310058 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 24
11309987 TAATTATTTG
*
11309997 ATAATTATTTATATATTAATAATAT
1 ATAATTATTT-TATATAAATAATAT
*
11310022 ATAATTTATTATATATAAAT-ATA-
1 ATAA-TTATTTTATATAAATAATAT
*
11310045 ATAATAATTTTATA
1 ATAATTATTTTATA
11310059 ATTATTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
22 8 0.25
23 4 0.12
24 3 0.09
25 12 0.38
26 5 0.16
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
ATAATTATTTTATATAAATAATAT
Found at i:11310071 original size:26 final size:26
Alignment explanation
Indices: 11310014--11310078 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
11310004 TTTATATATT
*
11310014 AATAATATATAA-TTTATTATATATAA
1 AATAATA-ATAATTTTATAATATATAA
11310040 ATATAATAATAATTTTATAAT-TATTAA
1 A-ATAATAATAATTTTATAATATA-TAA
*
11310067 AATAATTATAAT
1 AATAATAATAAT
11310079 ATAATCAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 17 0.50
27 17 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
AATAATAATAATTTTATAATATATAA
Found at i:11310077 original size:18 final size:17
Alignment explanation
Indices: 11310054--11310123 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 17
11310044 AATAATAATT
11310054 TTATAATTATTAAAATAA
1 TTATAATTATT-AAATAA
* *
11310072 TTATAATATAATCAACT-A
1 TTATAAT-T-ATTAAATAA
*
11310090 TTATAA-TATTATATAA
1 TTATAATTATTAAATAA
11310106 TTAT-ATTA-TAAATAA
1 TTATAATTATTAAATAA
11310121 TTA
1 TTA
11310124 ATATTATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
15 14 0.33
16 8 0.19
18 14 0.33
19 4 0.10
20 2 0.05
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
TTATAATTATTAAATAA
Found at i:11310127 original size:16 final size:14
Alignment explanation
Indices: 11309984--11310130 Score: 52
Period size: 13 Copynumber: 10.9 Consensus size: 14
11309974 AAATAATTTA
11309984 AATTAATTATT-TGAT
1 AATTAA-TATTAT-AT
11309999 AATT-AT-TTATAT
1 AATTAATATTATAT
*
11310011 -ATTAATAATATAT
1 AATTAATATTATAT
11310024 AATT--TATTATAT
1 AATTAATATTATAT
*
11310036 -ATAAATA-TA-AT
1 AATTAATATTATAT
*
11310047 AA-TAATTTTATAAT
1 AATTAATATTAT-AT
* * *
11310061 TATTAAAATAATTAT
1 AATTAATATTA-TAT
11310076 AATATAATCA--ACTAT
1 AAT-TAAT-ATTA-TAT
*
11310091 TA-TAATATTATAT
1 AATTAATATTATAT
11310104 AATT-ATATTATAAAT
1 AATTAATATTAT--AT
11310119 AATTAATATTAT
1 AATTAATATTAT
11310131 TTTAATATAA
Statistics
Matches: 98, Mismatches: 14, Indels: 39
0.65 0.09 0.26
Matches are distributed among these distances:
11 10 0.10
12 19 0.19
13 24 0.24
14 9 0.09
15 24 0.24
16 11 0.11
17 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (14 bp):
AATTAATATTATAT
Found at i:11310275 original size:16 final size:16
Alignment explanation
Indices: 11310254--11310286 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
11310244 TTATAAAATA
11310254 ATTATT-TATATAATTT
1 ATTATTATA-ATAATTT
11310270 ATTATTATAATAATTT
1 ATTATTATAATAATTT
11310286 A
1 A
11310287 CAAATAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTATTATAATAATTT
Found at i:11310408 original size:36 final size:35
Alignment explanation
Indices: 11310288--11310410 Score: 96
Period size: 36 Copynumber: 3.4 Consensus size: 35
11310278 AATAATTTAC
*
11310288 AAATAATTATAATTAAAAATT-ATAACTAA-TTATT-T
1 AAATAATAATAA-T-AAAATTAATAA-TAATTTATTAT
*
11310323 AAATTAA-AGATAATAAAATTAAATAATATTTTAATTAT
1 AAA-TAATA-ATAATAAAATT-AATAATAATTT-ATTAT
*
11310361 -TATAACT-ATAATATAAATTAATAATAATTTATTAT
1 AAATAA-TAATAATA-AAATTAATAATAATTTATTAT
11310396 AAATAATAATAATAA
1 AAATAATAATAATAA
11310411 TATAATATAT
Statistics
Matches: 71, Mismatches: 5, Indels: 24
0.71 0.05 0.24
Matches are distributed among these distances:
34 6 0.08
35 13 0.18
36 42 0.59
37 9 0.13
38 1 0.01
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.41
Consensus pattern (35 bp):
AAATAATAATAATAAAATTAATAATAATTTATTAT
Found at i:11310419 original size:23 final size:21
Alignment explanation
Indices: 11310362--11310419 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 21
11310352 TTTAATTATT
11310362 ATAACTATAATATAAATTAATA
1 ATAA-TATAATATAAATTAATA
* *
11310384 ATAATTTATTATAAATAATAATA
1 ATAATATAATATAAAT--TAATA
11310407 ATAATATAATATA
1 ATAATATAATATA
11310420 TTAGTTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 10 0.33
22 4 0.13
23 16 0.53
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
ATAATATAATATAAATTAATA
Found at i:11310529 original size:14 final size:16
Alignment explanation
Indices: 11310510--11310542 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
11310500 AATTTATATA
11310510 ATTAATTAT-TA-ATT
1 ATTAATTATATAGATT
11310524 ATTAATTATATAGATT
1 ATTAATTATATAGATT
11310540 ATT
1 ATT
11310543 CAACTATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 2 0.12
16 6 0.35
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
ATTAATTATATAGATT
Found at i:11311101 original size:11 final size:11
Alignment explanation
Indices: 11311087--11311127 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
11311077 TTAAAATATT
11311087 ATAATTAATCA
1 ATAATTAATCA
11311098 ATAATTAAT-A
1 ATAATTAATCA
*
11311108 ATTTATTAATCA
1 A-TAATTAATCA
11311120 ATAATTAA
1 ATAATTAA
11311128 AATATTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 2 0.08
11 22 0.85
12 2 0.08
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (11 bp):
ATAATTAATCA
Found at i:11311115 original size:22 final size:23
Alignment explanation
Indices: 11311076--11311136 Score: 88
Period size: 22 Copynumber: 2.6 Consensus size: 23
11311066 TAATTAAATT
11311076 ATTAAAATATTATAATTAATCAATA
1 ATTAAAATATT-T-ATTAATCAATA
*
11311101 ATTAATA-ATTTATTAATCAATA
1 ATTAAAATATTTATTAATCAATA
11311123 ATTAAAATATTTAT
1 ATTAAAATATTTAT
11311137 GATTATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 17 0.52
23 7 0.21
24 3 0.09
25 6 0.18
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTAAAATATTTATTAATCAATA
Found at i:11311688 original size:22 final size:22
Alignment explanation
Indices: 11311656--11311698 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
11311646 TATAGAAAAT
*
11311656 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
11311678 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
11311699 TAACTAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:11312294 original size:26 final size:29
Alignment explanation
Indices: 11312265--11312329 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 29
11312255 CTAACTTATG
11312265 TATATATATTTA-TAATA-TAATA-ATTA
1 TATATATATTTATTAATATTAATATATTA
* * *
11312291 TATA-AAAATTATTAATATTATTATATTA
1 TATATATATTTATTAATATTAATATATTA
11312319 TATTATATATT
1 TA-TATATATT
11312330 AATTTAGTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
25 5 0.17
26 9 0.31
27 4 0.14
28 6 0.21
29 2 0.07
30 3 0.10
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (29 bp):
TATATATATTTATTAATATTAATATATTA
Found at i:11312318 original size:8 final size:9
Alignment explanation
Indices: 11312298--11312413 Score: 63
Period size: 9 Copynumber: 13.3 Consensus size: 9
11312288 TTATATAAAA
11312298 ATTATTAAT
1 ATTATTAAT
11312307 ATTATT-AT
1 ATTATTAAT
*
11312315 ATTA-TATT
1 ATTATTAAT
11312323 ATATATTAAT
1 AT-TATTAAT
11312333 -TTAGTTAAT
1 ATTA-TTAAT
*
11312342 -TTATAAAT
1 ATTATTAAT
11312350 -TATATTAAAT
1 AT-TATT-AAT
11312360 ATTA-TAAT
1 ATTATTAAT
11312368 A-TATTAA-
1 ATTATTAAT
11312375 ATATATTAAT
1 AT-TATTAAT
11312385 -TTCATTAAT
1 ATT-ATTAAT
* *
11312394 CTTATAAAT
1 ATTATTAAT
*
11312403 AAT-TTAAT
1 ATTATTAAT
11312411 ATT
1 ATT
11312414 TAAAATTAAT
Statistics
Matches: 85, Mismatches: 9, Indels: 27
0.70 0.07 0.22
Matches are distributed among these distances:
7 4 0.05
8 30 0.35
9 40 0.47
10 10 0.12
11 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.53
Consensus pattern (9 bp):
ATTATTAAT
Found at i:11312329 original size:17 final size:17
Alignment explanation
Indices: 11312309--11312378 Score: 67
Period size: 17 Copynumber: 4.2 Consensus size: 17
11312299 TTATTAATAT
*
11312309 TATTATATTATATTATA
1 TATTATATTATATTAAA
11312326 TATTA-ATT-TAGTT-AA
1 TATTATATTATA-TTAAA
11312341 T-TTATAAATTATATTAAA
1 TATTAT--ATTATATTAAA
*
11312359 TATTATAATATATTAAA
1 TATTATATTATATTAAA
11312376 TAT
1 TAT
11312379 ATTAATTTCA
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
14 3 0.07
15 4 0.09
16 5 0.11
17 23 0.52
18 5 0.11
19 4 0.09
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (17 bp):
TATTATATTATATTAAA
Found at i:11312352 original size:33 final size:32
Alignment explanation
Indices: 11312272--11312374 Score: 91
Period size: 33 Copynumber: 3.0 Consensus size: 32
11312262 ATGTATATAT
* *
11312272 ATTTATAATATAATAATTATATA-AAAATTATTA
1 ATTTATAA-ATTAT-ATTATATATTAAATTATTA
* *
11312305 ATATTATTATATTATATTATATATTAATTTAGTTA
1 AT-TTA-TAAATTATATTATATATTAAATTA-TTA
*
11312340 ATTTATAAATTATATTAAATATTATAATATATTA
1 ATTTATAAATTATATTATATATTA-AAT-TATTA
11312374 A
1 A
11312375 ATATATTAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
33 27 0.47
34 21 0.37
35 9 0.16
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (32 bp):
ATTTATAAATTATATTATATATTAAATTATTA
Found at i:11312393 original size:26 final size:24
Alignment explanation
Indices: 11312289--11312403 Score: 81
Period size: 26 Copynumber: 4.4 Consensus size: 24
11312279 ATATAATAAT
*
11312289 TATATAAAAATTATTAATATTATT-A
1 TATATAAATA-TATTAAT-TTATTAA
*
11312314 TATTATATTATATATTAATTTAGTTAA
1 TA-TATA-AATATATTAATTTA-TTAA
*
11312341 TTTATAAATTATATTAAATATTA-TAA
1 TATATAAA-TATATT-AAT-TTATTAA
11312367 TATATTAAATATATTAATTTCATTAA
1 TATA-TAAATATATTAATTT-ATTAA
*
11312393 TCTTATAAATA
1 T-ATATAAATA
11312404 ATTTAATATT
Statistics
Matches: 73, Mismatches: 6, Indels: 21
0.73 0.06 0.21
Matches are distributed among these distances:
24 2 0.03
25 10 0.14
26 45 0.62
27 13 0.18
28 3 0.04
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (24 bp):
TATATAAATATATTAATTTATTAA
Found at i:11314317 original size:12 final size:12
Alignment explanation
Indices: 11314281--11314323 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
11314271 TAAAAATAAT
*
11314281 ATTATATAAATA
1 ATTATATAATTA
* *
11314293 ATTATTTATTTA
1 ATTATATAATTA
11314305 ATTATATAATTAA
1 ATTATATAATT-A
11314318 ATTATA
1 ATTATA
11314324 GTTAAAATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 18 0.72
13 7 0.28
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
ATTATATAATTA
Found at i:11314448 original size:21 final size:23
Alignment explanation
Indices: 11314424--11314471 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
11314414 TTATTATAAC
11314424 ATAATAA-TTATATTTAA-TGAT
1 ATAATAATTTATATTTAATTGAT
*
11314445 ATAATAATTTCTATTTAATTGAT
1 ATAATAATTTATATTTAATTGAT
11314468 -TAAT
1 ATAAT
11314472 TATAAAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 7 0.29
22 13 0.54
23 4 0.17
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (23 bp):
ATAATAATTTATATTTAATTGAT
Found at i:11314584 original size:17 final size:17
Alignment explanation
Indices: 11314562--11314598 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
11314552 ATTAACTATA
11314562 ATATTATTTAAAATTAT
1 ATATTATTTAAAATTAT
* *
11314579 ATATTATTTTATATTAT
1 ATATTATTTAAAATTAT
11314596 ATA
1 ATA
11314599 ACCATATCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATATTATTTAAAATTAT
Found at i:11314823 original size:25 final size:26
Alignment explanation
Indices: 11314784--11314841 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
11314774 TAAACTACTA
*
11314784 ATATGATTATAATATA-AGATAATATT
1 ATAT-ATTATAATATATAAATAATATT
11314810 ATATATTATAATATATAAATAATATT
1 ATATATTATAATATATAAATAATATT
11314836 AT-TATT
1 ATATATT
11314842 TATTAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 15 0.50
26 15 0.50
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (26 bp):
ATATATTATAATATATAAATAATATT
Found at i:11314851 original size:29 final size:27
Alignment explanation
Indices: 11314795--11314851 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 27
11314785 TATGATTATA
*
11314795 ATATAAGATAATATTATATATTATAAT
1 ATATAAGATAATATTATATATTAAAAT
11314822 ATATAA-ATAATATTATTATTTATTAAAAT
1 ATATAAGATAATATTA-TA--TATTAAAAT
11314851 A
1 A
11314852 ATTATAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 9 0.35
27 8 0.31
29 9 0.35
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (27 bp):
ATATAAGATAATATTATATATTAAAAT
Found at i:11314861 original size:19 final size:19
Alignment explanation
Indices: 11314812--11314861 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
11314802 ATAATATTAT
*
11314812 ATATTATAATATATAAATA
1 ATATTATAATTTATAAATA
* *
11314831 ATATTATTATTTATTAA-A
1 ATATTATAATTTATAAATA
11314849 ATAATTATAATTT
1 AT-ATTATAATTT
11314862 TAATAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 3 0.12
19 23 0.88
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATTATAATTTATAAATA
Found at i:11315336 original size:33 final size:32
Alignment explanation
Indices: 11315297--11315370 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 32
11315287 TTATAGTATA
11315297 TAATAATATACT-TAATTATAATTAAATAACTAT
1 TAATAATAT-CTATAATTATAATTAAA-AACTAT
* * *
11315330 TAATAATATTTATAATTATATTTATAAACTAT
1 TAATAATATCTATAATTATAATTAAAAACTAT
*
11315362 TAATTATAT
1 TAATAATAT
11315371 TATCAAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 15 0.42
33 21 0.58
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (32 bp):
TAATAATATCTATAATTATAATTAAAAACTAT
Found at i:11315365 original size:32 final size:33
Alignment explanation
Indices: 11315309--11315371 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
11315299 ATAATATACT
11315309 TAATTATAATTAAATAACTATTAATAATATTTA
1 TAATTATAATTAAATAACTATTAATAATATTTA
* * *
11315342 TAATTATATTTATA-AACTATTAATTATATT
1 TAATTATAATTAAATAACTATTAATAATATT
11315372 ATCAAAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (33 bp):
TAATTATAATTAAATAACTATTAATAATATTTA
Found at i:11315481 original size:22 final size:23
Alignment explanation
Indices: 11315450--11315510 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
11315440 TAATTTTAAA
* *
11315450 TAATCAATTAAATAT-CTTAGATT
1 TAATTAATTAAATATAATTA-ATT
*
11315473 TAATT-ATTAATTATAATTAATT
1 TAATTAATTAAATATAATTAATT
11315495 TAATTAGATTAAATAT
1 TAATTA-ATTAAATAT
11315511 TTTATTAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 16 0.52
23 7 0.23
24 8 0.26
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (23 bp):
TAATTAATTAAATATAATTAATT
Found at i:11315599 original size:11 final size:11
Alignment explanation
Indices: 11315585--11315681 Score: 52
Period size: 11 Copynumber: 8.0 Consensus size: 11
11315575 TCTTATTTAA
11315585 TTAATAAATAT
1 TTAATAAATAT
11315596 TTAAATAACTATAT
1 TT-AATAA--ATAT
*
11315610 ATTAATAAATTT
1 -TTAATAAATAT
11315622 TTAATATAAATTAT
1 TT-A-ATAAA-TAT
* *
11315636 TAAATAATTAT
1 TTAATAAATAT
**
11315647 TTTTTAAATAAT
1 TTAATAAAT-AT
11315659 TTAAATAAAT-T
1 TT-AATAAATAT
11315670 ATTAATAAATAT
1 -TTAATAAATAT
11315682 AATTTATTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 21
0.68 0.10 0.22
Matches are distributed among these distances:
11 20 0.31
12 20 0.31
13 11 0.17
14 12 0.18
15 2 0.03
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (11 bp):
TTAATAAATAT
Found at i:11315632 original size:13 final size:12
Alignment explanation
Indices: 11315587--11315679 Score: 59
Period size: 13 Copynumber: 7.6 Consensus size: 12
11315577 TTATTTAATT
11315587 AATAAA-TATTTA
1 AATAAATTA-TTA
11315599 AATAACTATATATT-
1 AATAA--AT-TATTA
*
11315613 AATAAATTTTTA
1 AATAAATTATTA
11315625 ATATAAATTATTA
1 A-ATAAATTATTA
*
11315638 AAT-AATTATTT
1 AATAAATTATTA
** *
11315649 TTTAAATAATTTA
1 AATAAATTA-TTA
11315662 AATAAATTATT-
1 AATAAATTATTA
11315673 AATAAAT
1 AATAAAT
11315680 ATAATTTATT
Statistics
Matches: 63, Mismatches: 10, Indels: 17
0.70 0.11 0.19
Matches are distributed among these distances:
11 18 0.29
12 16 0.25
13 19 0.30
14 6 0.10
15 2 0.03
16 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (12 bp):
AATAAATTATTA
Found at i:11315639 original size:39 final size:37
Alignment explanation
Indices: 11315587--11315687 Score: 93
Period size: 36 Copynumber: 2.7 Consensus size: 37
11315577 TTATTTAATT
*
11315587 AATAAA-TATTTAAATAACTATATATTAATAAAT-TTTTA
1 AATAAATTA-TTAAATAA-TATAT-TTAATAAATAATTTA
**
11315625 ATATAAATTATTAAATAAT-TATTTTTTAAATAATTTA
1 A-ATAAATTATTAAATAATATATTTAATAAATAATTTA
11315662 AATAAATTATT-AATAAATATAATTTA
1 AATAAATTATTAAAT-AATAT-ATTTA
11315688 TTATTATTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
35 3 0.06
36 20 0.38
37 9 0.17
38 6 0.11
39 13 0.25
40 2 0.04
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (37 bp):
AATAAATTATTAAATAATATATTTAATAAATAATTTA
Found at i:11315860 original size:27 final size:26
Alignment explanation
Indices: 11315804--11315860 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 26
11315794 TTTTATCCAA
**
11315804 TATTAATAATTATTATAAATATTAGTT
1 TATTAATAATTACAATAAATATTAG-T
11315831 TATTAATAATATACAATATAATATTA-T
1 TATTAATAAT-TACAATA-AATATTAGT
11315858 TAT
1 TAT
11315861 CAATGAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 14 0.54
28 5 0.19
29 7 0.27
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (26 bp):
TATTAATAATTACAATAAATATTAGT
Found at i:11315910 original size:14 final size:13
Alignment explanation
Indices: 11315885--11315915 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
11315875 AATTAATTTA
11315885 ATTAAATATTAAT
1 ATTAAATATTAAT
11315898 ATTAAATTATTAAT
1 ATTAAA-TATTAAT
11315912 ATTA
1 ATTA
11315916 GTAATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAAATATTAAT
Found at i:11315912 original size:20 final size:20
Alignment explanation
Indices: 11315889--11315927 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11315879 AATTTAATTA
*
11315889 AATATTAATATTAAATTATT
1 AATATTAATAATAAATTATT
*
11315909 AATATTAGTAATAAATTAT
1 AATATTAATAATAAATTAT
11315928 AATTATAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
AATATTAATAATAAATTATT
Found at i:11316225 original size:19 final size:20
Alignment explanation
Indices: 11316191--11316233 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
11316181 TAGAAACAAC
11316191 ATTTTAAATTAATAACAATT
1 ATTTTAAATTAATAACAATT
*
11316211 ATTTTAAA-TATTAACAATT
1 ATTTTAAATTAATAACAATT
11316230 ATTT
1 ATTT
11316234 ATATTTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTTAAATTAATAACAATT
Found at i:11316442 original size:19 final size:19
Alignment explanation
Indices: 11316415--11316452 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
11316405 TTAATAATTC
*
11316415 AATATTATTATTAAAATAT
1 AATAATATTATTAAAATAT
11316434 AATAATATTATTAAAATAT
1 AATAATATTATTAAAATAT
11316453 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AATAATATTATTAAAATAT
Found at i:11317175 original size:16 final size:17
Alignment explanation
Indices: 11317151--11317183 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
11317141 TAAATATTTG
*
11317151 TTATTAATAAT-TTATA
1 TTATAAATAATATTATA
11317167 TTATAAATAATATTATA
1 TTATAAATAATATTATA
11317184 CTCAAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTATAAATAATATTATA
Found at i:11317384 original size:24 final size:24
Alignment explanation
Indices: 11317339--11317386 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
11317329 TAGTTAAGTC
*
11317339 TTATTAATATTAATAATAAATTAA
1 TTATTAATATTAACAATAAATTAA
*
11317363 TTATTAATTTTTAACAAT-AATTAA
1 TTATTAA-TATTAACAATAAATTAA
11317387 AAATTAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
TTATTAATATTAACAATAAATTAA
Found at i:11317437 original size:16 final size:18
Alignment explanation
Indices: 11317418--11317450 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
11317408 TTATTTATAT
11317418 TTAATAA-A-TTATATTG
1 TTAATAATAGTTATATTG
11317434 TTAATAATAGTTATATT
1 TTAATAATAGTTATATT
11317451 AATTATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (18 bp):
TTAATAATAGTTATATTG
Found at i:11317578 original size:22 final size:21
Alignment explanation
Indices: 11317525--11317578 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
11317515 AAATAAATTG
* *
11317525 ATATTAATTAATATTATTATTA
1 ATATTAA-TAATATAATTAATA
*
11317547 AGTATAAATAATATAATTGAATA
1 A-TATTAATAATATAATT-AATA
11317570 ATATTAATA
1 ATATTAATA
11317579 TTTAACATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 17 0.65
23 9 0.35
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (21 bp):
ATATTAATAATATAATTAATA
Found at i:11317804 original size:20 final size:20
Alignment explanation
Indices: 11317779--11317823 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
11317769 TTTAAGTATA
*
11317779 ATTTATAATAAATAATTAAT
1 ATTTATAATAAATAAGTAAT
* *
11317799 ATTTATTATTAATAAGTAAT
1 ATTTATAATAAATAAGTAAT
11317819 ATTTA
1 ATTTA
11317824 AATGTTCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
ATTTATAATAAATAAGTAAT
Found at i:11321810 original size:27 final size:27
Alignment explanation
Indices: 11321772--11321831 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
11321762 TTAAGTATAG
* *
11321772 CAAGCAAAGCATGTCATCCTCATCAAT
1 CAAGCCAAGCATGTCATCATCATCAAT
11321799 CAAGCCAAGCATGTCATCATCATCAAT
1 CAAGCCAAGCATGTCATCATCATCAAT
11321826 CAAGCC
1 CAAGCC
11321832 TAGTTTTGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.32, G:0.12, T:0.20
Consensus pattern (27 bp):
CAAGCCAAGCATGTCATCATCATCAAT
Found at i:11322902 original size:16 final size:16
Alignment explanation
Indices: 11322878--11322908 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11322868 CTTGATGACA
*
11322878 TATCTTTAACAATTGG
1 TATCCTTAACAATTGG
11322894 TATCCTTAACAATTG
1 TATCCTTAACAATTG
11322909 TATGGGCTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (16 bp):
TATCCTTAACAATTGG
Found at i:11323168 original size:17 final size:17
Alignment explanation
Indices: 11323146--11323179 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
11323136 TACTTAATTT
11323146 ATAATTAATTAATATTA
1 ATAATTAATTAATATTA
*
11323163 ATAATTACTTAATATTA
1 ATAATTAATTAATATTA
11323180 TTAACATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
ATAATTAATTAATATTA
Found at i:11323297 original size:17 final size:18
Alignment explanation
Indices: 11323275--11323320 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
11323265 CAATATTATA
*
11323275 TAATTATATTATTAAT-T
1 TAATTATATTAATAATAT
11323292 TAATTATA-TAATAATAT
1 TAATTATATTAATAATAT
*
11323309 TAATTTTATTAA
1 TAATTATATTAA
11323321 ACAATTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.24
17 16 0.64
18 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TAATTATATTAATAATAT
Found at i:11323319 original size:22 final size:25
Alignment explanation
Indices: 11323268--11323319 Score: 74
Period size: 22 Copynumber: 2.2 Consensus size: 25
11323258 AATATAACAA
11323268 TATTATATAATTATATTATTAATTT
1 TATTATATAATTATATTATTAATTT
*
11323293 AATTATATAA-TA-A-TATTAATTT
1 TATTATATAATTATATTATTAATTT
11323315 TATTA
1 TATTA
11323320 AACAATTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 13 0.52
23 1 0.04
24 2 0.08
25 9 0.36
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TATTATATAATTATATTATTAATTT
Done.